Citrus Sinensis ID: 035895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
Protein Sequence
MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Secondary Structure (PSIPRED)
cccccccccccEEcccHHHHHHHHcccccccEEEcccHHHHccccccEEEccccccEEEccccccEEEccccccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccEEEEccccEEEEEEEccccEEEEEEEcccccccccEEEEccccccccHHHHHccccccccHHHHHHHHHHHHHHHcHHcccccccEEEccccccccccccccEEEEccccccccccccccccccEEcccEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccHHHHHHHHHHHccccccccccHHHccccccEEEEcccccccccccHHHccEEccccccccccccccccHHHccccccEEEEEccccccccccHHHHcccHHccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHcccHccEEEcccccEEEEEEcccccEEEEEEEccccccccccEEEEEccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHEEEcccccEEEccccccHHEccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mwseklnnrqldggmtgdvCYRICtidsqnklVGIVSITIFNlstlkvfdvdnnyvlGRLSSIVDELslsdnyltsstpelsflssmsnckylkkldisrnpldgflprvvgnfsQSLEFIWMsdcnisggiseeignltdlisidlggnklngsISITLGKLQKLQFLsfrgnelegsipNVLCHLAVLFQLdlrgnklsgsiptcfgnLTALrnlhldsneltsipSILWNLKDILyldfwsnlfvgplpskignlkvlTRIDfsrnnllgdipttIQGLKSLQFLSLghnrlqgsipnsfdDLVSLesldlsnnnlseiiPLSLEKLLYLNILLIVVVILALKFGLISRCQKratklpnvsnmqpqasrRRFSYQELLRatdgfsannligrgsfGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTtngslekvlysSNYILDILQRLNIMIDVTSALEYlhfgystpiihcdlkphnkllddNIVAHLSDFGiaklltgedqsmTQTQTLAIIGYMAP
Flexible Loop (DISEMBL)
mwseklnnrqldggmtGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQkratklpnvsnmqpqasrRRFSYQELLRATdgfsannligrGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Low Complexity Region (SEG)
MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNsfddlvslesldlsnnnlsEIIPlslekllylnillivvvilalKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Disordered region (IsUnstruct)
*************GMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKR******************FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ*MTQTQTLAIIGY***
Disordered Region (DISOPRED)
MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLIS********************RRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG********QTLAIIGYMAP
Disordered Region (DISEMBL)
********RQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Disordered Region (DISPRO)
MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	527	2.2.26 [Sep-21-2011]
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.943	0.507	0.296	3e-52
Q9FL28	1173	LRR receptor-like serine/	no	no	0.933	0.419	0.286	3e-52
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.903	0.471	0.299	3e-51
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.925	0.487	0.296	1e-48
Q9LP24	1120	Probable leucine-rich rep	no	no	0.920	0.433	0.292	5e-48
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.963	0.426	0.295	8e-48
O49545	1003	Leucine-rich repeat recep	no	no	0.899	0.472	0.300	1e-47
P93194	1109	Receptor-like protein kin	N/A	no	0.922	0.438	0.285	2e-47
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.929	0.468	0.281	4e-47
C0LGW6	966	LRR receptor-like serine/	no	no	0.984	0.537	0.288	9e-47

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 191/645 (29%), Positives = 287/645 (44%), Gaps = 148/645 (22%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTS---STP 79
           NKL G V  ++ N + LK  D+++N + G L S V         L LS N+  S   +T 
Sbjct: 201 NKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTN 260

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG-- 137
              F +S++N   L++L+++ N L G +   V + S +L  I +    I G I  EI   
Sbjct: 261 LEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNL 320

Query: 138 ----------------------NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE 175
                                  L+ L  + L  N L G I + LG + +L  L    N 
Sbjct: 321 LNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNN 380

Query: 176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIP-SILWN 233
           L GSIP+   +L+ L +L L GN LSG++P   G    L  L L  N LT +IP  ++ N
Sbjct: 381 LSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSN 440

Query: 234 LKDI-LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFL---- 288
           L+++ LYL+  SN   GP+P ++  + ++  +D S N L G IP  +    +L+ L    
Sbjct: 441 LRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSR 500

Query: 289 ---------SLGH-----------NRLQGSIPNSFDDLVSLESLDLSNNNLSEII----- 323
                    SLG            NRL G+IP SF    +L+ L+ S N LS  +     
Sbjct: 501 NGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGS 560

Query: 324 --PLSLEKLLYLNIL---------------------------LIVVVILALKFGLISRCQ 354
              L++E  L  ++L                           +   V+    + L+ R +
Sbjct: 561 FSKLTIESFLGDSLLCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSR 620

Query: 355 ---------KRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR 405
                    K   +     N Q      R SYQ+L+ AT GF+A++LIG G FG VYK  
Sbjct: 621 FGKNLTVYAKEEVEDEEKQN-QNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGV 679

Query: 406 LQDGMEFAIKV------FHFS------------------------CSNEDFRALVLEYTT 435
           L++  + A+KV        FS                        CS   F ALVL    
Sbjct: 680 LRNNTKVAVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLPLMP 739

Query: 436 NGSLEKVLYSSNYI---LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN 492
           NGSLE+ LY   Y    LD++Q +NI  DV   + YLH      ++HCDLKP N LLDD 
Sbjct: 740 NGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDE 799

Query: 493 IVAHLSDFGIAKLLTGEDQSMTQTQTLAI----------IGYMAP 527
           + A ++DFGI++L+ G +++++   +++           +GY+AP
Sbjct: 800 MTALVTDFGISRLVQGVEETVSTDDSVSFGSTDGLLCGSVGYIAP 844

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 176/614 (28%), Positives = 284/614 (46%), Gaps = 122/614 (19%)

Query: 29   QNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELS------LSDNYLTSSTPELS 82
            +N   G +   IFN S L+   V +N + G L  ++ +L       +S N LT   P   
Sbjct: 440  RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPR-- 497

Query: 83   FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
                + N K L  L +  N   G +PR + N +  L+ + M   ++ G I EE+ ++  L
Sbjct: 498  ---EIGNLKDLNILYLHSNGFTGRIPREMSNLTL-LQGLRMYSNDLEGPIPEEMFDMKLL 553

Query: 143  ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR------ 196
              +DL  NK +G I     KL+ L +LS +GN+  GSIP  L  L++L   D+       
Sbjct: 554  SVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTG 613

Query: 197  --------------------GNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLK 235
                                 N L+G+IP   G L  ++ + L +N  + SIP  L   K
Sbjct: 614  TIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACK 673

Query: 236  DILYLDFWSN-------------------------LFVGPLPSKIGNLKVLTRIDFSRNN 270
            ++  LDF  N                          F G +P   GN+  L  +D S NN
Sbjct: 674  NVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNN 733

Query: 271  LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN-----NLSEIIPL 325
            L G+IP ++  L +L+ L L  N L+G +P S     ++ + DL  N     +   + P 
Sbjct: 734  LTGEIPESLANLSTLKHLKLASNNLKGHVPES-GVFKNINASDLMGNTDLCGSKKPLKPC 792

Query: 326  SLEKL--LYLNILLIVVVILA---------LKFGLISRCQKRATKLPNVS-----NMQPQ 369
            ++++    +     ++++IL          L   +++ C+K+  K+ N S     ++   
Sbjct: 793  TIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSA 852

Query: 370  ASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFH---FSCSNEDF 426
               +RF  +EL +ATD F++ N+IG  S  +VYK +L+DG   A+KV +   FS  ++ +
Sbjct: 853  LKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKW 912

Query: 427  -----------------------------RALVLEYTTNGSLEKVLY-SSNYILDILQRL 456
                                         +ALVL +  NG+LE  ++ S+  I  +L+++
Sbjct: 913  FYTEAKTLSQLKHRNLVKILGFAWESGKTKALVLPFMENGNLEDTIHGSAAPIGSLLEKI 972

Query: 457  NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT 516
            ++ + + S ++YLH GY  PI+HCDLKP N LLD + VAH+SDFG A++L   +   T  
Sbjct: 973  DLCVHIASGIDYLHSGYGFPIVHCDLKPANILLDSDRVAHVSDFGTARILGFREDGSTTA 1032

Query: 517  QTLAI---IGYMAP 527
             T A    IGY+AP
Sbjct: 1033 STSAFEGTIGYLAP 1046

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 176/588 (29%), Positives = 274/588 (46%), Gaps = 112/588 (19%)

Query: 20  CYRICTID-SQNKLVGIVSITIFNLST-LKVFDVDNNYVLGRLSSIV------DELSLSD 71
           C ++ T+   +N+L G + I+I NLS  L   D+    + G +   +       +L L  
Sbjct: 335 CTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQ 394

Query: 72  NYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG 131
           N L+   P     +S+     L+ L +  N L G +P  +GN +  LE + +S+    G 
Sbjct: 395 NMLSGPLP-----TSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTM-LETLDLSNNGFEGI 448

Query: 132 ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF 191
           +   +GN + L+ + +G NKLNG+I + + K+Q+L  L   GN L GS+P  +  L  L 
Sbjct: 449 VPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLG 508

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
            L L  NKLSG +P   GN   + +L L+                        NLF G +
Sbjct: 509 TLSLGDNKLSGKLPQTLGNCLTMESLFLE-----------------------GNLFYGDI 545

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP--NSFDDLVSL 309
           P   G + V   +D S N+L G IP        L++L+L  N L+G +P    F++  ++
Sbjct: 546 PDLKGLVGV-KEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTV 604

Query: 310 ESLDLSNNNL-SEIIPLSLEKLL---------------------YLNILLIVVVILALKF 347
               + NN+L   I+   L+  L                      + I L++++ +A   
Sbjct: 605 SI--VGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVT 662

Query: 348 GLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKA-RL 406
            +  R +K+  +  N +    +    + SY +L  AT+GFS++N++G GSFG+VYKA  L
Sbjct: 663 LIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLL 722

Query: 407 QDGMEFAIKVFHF-----------------------------SCSNED-----FRALVLE 432
            +    A+KV +                              +CS+ D     FRAL+ E
Sbjct: 723 TEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYE 782

Query: 433 YTTNGSLEKVLYSS--------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
           +  NGSL+  L+          +  L +L+RLNI IDV S L+YLH     PI HCDLKP
Sbjct: 783 FMPNGSLDMWLHPEEVEEIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAHCDLKP 842

Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQS-----MTQTQTLAIIGYMAP 527
            N LLDD++ AH+SDFG+A+LL   D+      ++       IGY AP
Sbjct: 843 SNVLLDDDLTAHVSDFGLARLLLKFDEESFFNQLSSAGVRGTIGYAAP 890

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 172/580 (29%), Positives = 257/580 (44%), Gaps = 92/580 (15%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDE------LSLSDNYLTSSTPEL 81
           S N   G +  +   L  L + ++  N + G +   + E      L L +N  T S P+ 
Sbjct: 295 SNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQ- 353

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
                +     L  LD+S N L G LP  + + ++ +  I + +  + G I + +G    
Sbjct: 354 ----KLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNF-LFGSIPDSLGKCES 408

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV-LFQLDLRGNKL 200
           L  I +G N LNGSI   L  L KL  +  + N L G +P     ++  L Q+ L  N+L
Sbjct: 409 LTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQL 468

Query: 201 SGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           SGS+P   GNL+ ++ L LD N+ + SIP  +  L+ +  LDF  NLF G +  +I   K
Sbjct: 469 SGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCK 528

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           +LT +D SRN L GDIP  + G+K L +L+L  N L GSIP +   + SL S+D S NNL
Sbjct: 529 LLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNL 588

Query: 320 SEIIPLSLEKLLYLNILLIV------------------------------------VVIL 343
           S ++P S  +  Y N    V                                    ++  
Sbjct: 589 SGLVP-STGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHVKPLSATTKLLLVLGLLFC 647

Query: 344 ALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATD----GFSANNLIGRGSFG 399
           ++ F +++  + R+ +     N     + R  ++Q L    D        +N+IG+G  G
Sbjct: 648 SMVFAIVAIIKARSLR-----NASEAKAWRLTAFQRLDFTCDDVLDSLKEDNIIGKGGAG 702

Query: 400 SVYKARLQDGMEFAIK----VFHFS---------------------------CSNEDFRA 428
            VYK  +  G   A+K    + H S                           CSN +   
Sbjct: 703 IVYKGTMPKGDLVAVKRLATMSHGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNL 762

Query: 429 LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
           LV EY  NGSL +VL+      L    R  I ++    L YLH   S  I+H D+K +N 
Sbjct: 763 LVYEYMPNGSLGEVLHGKKGGHLHWNTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNI 822

Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LLD N  AH++DFG+AK L     S   +      GY+AP
Sbjct: 823 LLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAP 862

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 173/591 (29%), Positives = 257/591 (43%), Gaps = 106/591 (17%)

Query: 30   NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV------DELSLSDNYLTSSTPELSF 83
            N L G +   + N S L    +D N   G     V        +SL  N+L    P+   
Sbjct: 448  NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPK--- 504

Query: 84   LSSMSNCKYLKK------------------------LDISRNPLDGFLPRVVGNFSQS-- 117
              S+ +CK L +                        +D S N   G    +  N+ +S  
Sbjct: 505  --SLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHG---EISSNWEKSPK 559

Query: 118  LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE 177
            L  + MS+ NI+G I  EI N+T L+ +DL  N L G +   +G L  L  L   GN+L 
Sbjct: 560  LGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLS 619

Query: 178  GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKD 236
            G +P  L  L  L  LDL  N  S  IP  F +   L +++L  N+   SIP  L  L  
Sbjct: 620  GRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQ 678

Query: 237  ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
            +  LD   N   G +PS++ +L+ L ++D S NNL G IPTT +G+ +L  + + +N+L+
Sbjct: 679  LTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLE 738

Query: 297  GSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK---------------LLYLNILLIVVV 341
            G +P++     +       N  L   IP    K               +  L  +L V+V
Sbjct: 739  GPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPILGVLV 798

Query: 342  ILALKFGLISRCQKRATKLPNVSNMQPQASRR--------RFSYQELLRATDGFSANNLI 393
            IL++     + C  R  KL N  N  P+            +F YQ+++ +T+ F   +LI
Sbjct: 799  ILSICANTFTYC-IRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLI 857

Query: 394  GRGSFGSVYKARLQDGM---------------------EF--------------AIKVFH 418
            G G +  VY+A LQD +                     EF               +K+F 
Sbjct: 858  GTGGYSKVYRANLQDTIIAVKRLHDTIDEEISKPVVKQEFLNEVKALTEIRHRNVVKLFG 917

Query: 419  FSCSNEDFRALVLEYTTNGSLEKVLYSSNYI--LDILQRLNIMIDVTSALEYLHFGYSTP 476
            F CS+     L+ EY   GSL K+L +      L   +R+N++  V  AL Y+H    TP
Sbjct: 918  F-CSHRRHTFLIYEYMEKGSLNKLLANDEEAKRLTWTKRINVVKGVAHALSYMHHDRITP 976

Query: 477  IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            I+H D+   N LLD++  A +SDFG AKLL  +  S   +      GY+AP
Sbjct: 977  IVHRDISSGNILLDNDYTAKISDFGTAKLL--KTDSSNWSAVAGTYGYVAP 1025

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  192 bits (487), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 182/616 (29%), Positives = 280/616 (45%), Gaps = 108/616 (17%)

Query: 12   DGGMTGDVCYRICTIDS-------QNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV 64
            D  +TG++   I  + S        N   G + + + + ++L   D+ +N + G++   +
Sbjct: 481  DNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKI 540

Query: 65   DELS------LSDNYLTSS-------------TPELSFLSSMSNCKYLKKLDISRNPLDG 105
              L+      LS N L+ S              P+LSFL      ++    D+S N L G
Sbjct: 541  TALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFL------QHHGIFDLSYNRLSG 594

Query: 106  FLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK 165
             +P  +G     +E I +S+ ++SG I   +  LT+L  +DL GN L GSI   +G   K
Sbjct: 595  PIPEELGECLVLVE-ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLK 653

Query: 166  LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
            LQ L+   N+L G IP     L  L +L+L  NKL G +P   GNL  L ++ L  N L+
Sbjct: 654  LQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLS 713

Query: 226  -SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS 284
              + S L  ++ ++ L    N F G +PS++GNL  L  +D S N L G+IPT I GL +
Sbjct: 714  GELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPN 773

Query: 285  LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK--------------- 329
            L+FL+L  N L+G +P+        ++L   N  L   +  S  K               
Sbjct: 774  LEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSAWGIAGL 833

Query: 330  LLYLNILLIVVVILALKFGLISRCQKR-------ATKLP-----NVSNMQPQASRRRFSY 377
            +L   I++ V V    ++ +  R ++R        ++L      N+  +    SR   S 
Sbjct: 834  MLGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQNLYFLSGSRSREPLSI 893

Query: 378  ------QELLR--------ATDGFSANNLIGRGSFGSVYK----------------ARLQ 407
                  Q LL+        ATD FS  N+IG G FG+VYK                A+ Q
Sbjct: 894  NIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQ 953

Query: 408  DGMEFAI------KVFHFS-------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDIL- 453
               EF        KV H +       CS  + + LV EY  NGSL+  L +   +L++L 
Sbjct: 954  GNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLD 1013

Query: 454  --QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
              +RL I +     L +LH G+   IIH D+K  N LLD +    ++DFG+A+L++   +
Sbjct: 1014 WSKRLKIAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLARLISA-CE 1072

Query: 512  SMTQTQTLAIIGYMAP 527
            S   T      GY+ P
Sbjct: 1073 SHVSTVIAGTFGYIPP 1088

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 181/603 (30%), Positives = 257/603 (42%), Gaps = 129/603 (21%)

Query: 46  LKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDG 105
           + VF     + LG LSS+   + LS+N  T   P     +S +  K L  L++ RN L G
Sbjct: 272 VNVFSGPLTWELGTLSSL-KSMDLSNNMFTGEIP-----ASFAELKNLTLLNLFRNKLHG 325

Query: 106 FLPRVVGNFSQSLEFIWMSDCNISGGISEEIG-----NLTDLISIDL---------GGNK 151
            +P  +G+  + LE + + + N +G I +++G     NL DL S  L          GNK
Sbjct: 326 EIPEFIGDLPE-LEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNK 384

Query: 152 LN----------GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR----- 196
           L           GSI  +LGK + L  +    N L GSIP  L  L  L Q++L+     
Sbjct: 385 LETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLS 444

Query: 197 -------------------GNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKD 236
                               N+LSG +P   GN T ++ L LD N+    IPS +  L+ 
Sbjct: 445 GELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQ 504

Query: 237 ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
           +  +DF  NLF G +  +I   K+LT +D SRN L G+IP  I  +K L +L+L  N L 
Sbjct: 505 LSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLV 564

Query: 297 GSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL-------LIVVVILALKFGL 349
           GSIP S   + SL SLD S NNLS ++P    +  Y N         L    +   K G+
Sbjct: 565 GSIPGSISSMQSLTSLDFSYNNLSGLVP-GTGQFSYFNYTSFLGNPDLCGPYLGPCKDGV 623

Query: 350 ISRCQKRATKLPNVSNMQ--------------------PQASRRRFSYQELLRAT----- 384
                +  +K P  ++M+                       S ++ S     R T     
Sbjct: 624 AKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKASESRAWRLTAFQRL 683

Query: 385 --------DGFSANNLIGRGSFGSVYKARLQDGMEFAIK--------------------- 415
                   D    +N+IG+G  G VYK  + +G   A+K                     
Sbjct: 684 DFTCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSSHDHGFNAEIQT 743

Query: 416 ---VFHFS-------CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTS 464
              + H         CSN +   LV EY  NGSL +VL+      L    R  I ++   
Sbjct: 744 LGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIALEAAK 803

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
            L YLH   S  I+H D+K +N LLD N  AH++DFG+AK L     S   +      GY
Sbjct: 804 GLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGY 863

Query: 525 MAP 527
           +AP
Sbjct: 864 IAP 866

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 168/589 (28%), Positives = 258/589 (43%), Gaps = 103/589 (17%)

Query: 29  QNKLVGIVSITIFNLSTLKVFDVDNNYVLGRL------SSIVDELSLSDNYLTSSTPELS 82
           +N   G++   +   S+L+V D+  N   G +         +  L L  NYL  S P   
Sbjct: 413 ENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVP--- 469

Query: 83  FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
             S +  C  L++L +  N L G LP  V    Q+L F  +S  N +G I   +GNL ++
Sbjct: 470 --SDLGGCSTLERLILEENNLRGGLPDFVEK--QNLLFFDLSGNNFTGPIPPSLGNLKNV 525

Query: 143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
            +I L  N+L+GSI   LG L KL+ L+   N L+G +P+ L +   L +LD   N L+G
Sbjct: 526 TAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNG 585

Query: 203 SIPTCFGNLTALRNLHLDSNELTS-IPSILWN-----------------------LKDIL 238
           SIP+  G+LT L  L L  N  +  IP+ L+                        L+ + 
Sbjct: 586 SIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALR 645

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
            L+  SN   G LP  +G LK+L  +D S NNL G +   +  ++SL F+++ HN   G 
Sbjct: 646 SLNLSSNKLNGQLPIDLGKLKMLEELDVSHNNLSGTL-RVLSTIQSLTFINISHNLFSGP 704

Query: 299 IPNSFDDLVSLESLDLSNNN---------------LSEIIPLSLE-------------KL 330
           +P S    ++      S N+                S + P +++              +
Sbjct: 705 VPPSLTKFLNSSPTSFSGNSDLCINCPADGLACPESSILRPCNMQSNTGKGGLSTLGIAM 764

Query: 331 LYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSAN 390
           + L  LL ++ +      L   C+K   ++  +S  +   S       ++L AT+  +  
Sbjct: 765 IVLGALLFIICLFLFSAFLFLHCKKSVQEIA-ISAQEGDGSL----LNKVLEATENLNDK 819

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLE------------------ 432
            +IG+G+ G++YKA L     +A+K   F+       ++V E                  
Sbjct: 820 YVIGKGAHGTIYKATLSPDKVYAVKKLVFTGIKNGSVSMVREIETIGKVRHRNLIKLEEF 879

Query: 433 ------------YTTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                       Y  NGSL  +L+ +N    LD   R NI +     L YLHF     I+
Sbjct: 880 WLRKEYGLILYTYMENGSLHDILHETNPPKPLDWSTRHNIAVGTAHGLAYLHFDCDPAIV 939

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H D+KP N LLD ++  H+SDFGIAKLL     S+        IGYMAP
Sbjct: 940 HRDIKPMNILLDSDLEPHISDFGIAKLLDQSATSIPSNTVQGTIGYMAP 988

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 166/590 (28%), Positives = 259/590 (43%), Gaps = 100/590 (16%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV------DELSLSDNYLTSSTPELSF 83
           N+L G +   I N + L V  +D N   G L   +      + L+L DN+     P+   
Sbjct: 368 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPK--- 424

Query: 84  LSSMSNCKYLKKLDISRNPLDGFLPRVVG-------------NFSQSLEFIW-------- 122
             S+ +CK L ++    N   G +    G             NF   L   W        
Sbjct: 425 --SLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVA 482

Query: 123 --MSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI 180
             +S+ +I+G I  EI N+T L  +DL  N++ G +  ++  + ++  L   GN L G I
Sbjct: 483 FILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKI 542

Query: 181 PNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNEL-TSIPSILWNLKDILY 239
           P+ +  L  L  LDL  N+ S  IP    NL  L  ++L  N+L  +IP  L  L  +  
Sbjct: 543 PSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQM 602

Query: 240 LDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI 299
           LD   N   G + S+  +L+ L R+D S NNL G IP + + + +L  + + HN LQG I
Sbjct: 603 LDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPI 662

Query: 300 PNSF-------DDLVSLESLDLSNNNLSEIIPLSLEK----------LLYLNILLI-VVV 341
           P++        D     + L  S N    + P S+            ++Y+ + +I  ++
Sbjct: 663 PDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAII 722

Query: 342 ILALKFGLISRCQKRATKLPNVSNMQPQASR-------RRFSYQELLRATDGFSANNLIG 394
           IL++  G+    +KR  ++   ++ +             +  YQE+++AT  F    LIG
Sbjct: 723 ILSVCAGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIG 782

Query: 395 RGSFGSVYKARLQDGM---------------------EF--------------AIKVFHF 419
            G  G VYKA+L + +                     EF               +K+F F
Sbjct: 783 TGGHGKVYKAKLPNAIMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGF 842

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYI--LDILQRLNIMIDVTSALEYLHFGYSTPI 477
            CS+     LV EY   GSL KVL + +    LD  +R+N++  V  AL Y+H   S  I
Sbjct: 843 -CSHRRNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAI 901

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +H D+   N LL ++  A +SDFG AKLL  +  S   +      GY+AP
Sbjct: 902 VHRDISSGNILLGEDYEAKISDFGTAKLL--KPDSSNWSAVAGTYGYVAP 949

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  188 bits (477), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 184/637 (28%), Positives = 282/637 (44%), Gaps = 118/637 (18%)

Query: 2   WSEKLNNRQLDGGM-TGDVCYRICTIDS-------QNKLVGIVSITIFNLSTLKVFDVDN 53
           W+E L    L G M TG +   +C +          N L G +  +I N ++ ++ D+  
Sbjct: 189 WNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISY 248

Query: 54  NYVLGRLSS-----IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLP 108
           N + G +        V  LSL  N LT   PE+  L      + L  LD+S N L G +P
Sbjct: 249 NQITGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGL-----MQALAVLDLSDNELVGPIP 303

Query: 109 RVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF 168
            ++GN S + + +++    ++G I  E+GN++ L  + L  NKL G+I   LGKL++L  
Sbjct: 304 PILGNLSFTGK-LYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFE 362

Query: 169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT--- 225
           L+   N L G IP+ +   A L Q ++ GN LSGSIP  F NL +L  L+L SN      
Sbjct: 363 LNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKI 422

Query: 226 ----------------------SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTR 263
                                 SIP  L +L+ +L L+   N   G LP++ GNL+ +  
Sbjct: 423 PVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQM 482

Query: 264 IDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII 323
           ID S N L G IPT +  L++L  L L +N+L G IP+   +  +L +L++S NNLS I+
Sbjct: 483 IDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIV 542

Query: 324 P----------------------------------LSLEKLLYLNILLIVVVILALKFGL 349
           P                                      +   + I+L V+ +L + F  
Sbjct: 543 PPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPKSRVFSRGALICIVLGVITLLCMIFLA 602

Query: 350 ISRCQKRATKLPNVSNMQPQASR--------RRFSYQELLRATDGFSANNLIGRGSFGSV 401
           + +  ++   L   S      ++           ++ +++R T+  +   +IG G+  +V
Sbjct: 603 VYKSMQQKKILQGSSKQAEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTV 662

Query: 402 YKARLQDGMEFAIKVFH--FSCSNEDFRA---------------------------LVLE 432
           YK  L+     AIK  +  +  +  +F                             L  +
Sbjct: 663 YKCALKSSRPIAIKRLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPTGNLLFYD 722

Query: 433 YTTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD 490
           Y  NGSL  +L+ S     LD   RL I +     L YLH   +  IIH D+K  N LLD
Sbjct: 723 YMENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLD 782

Query: 491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +N  AHLSDFGIAK +    ++   T  L  IGY+ P
Sbjct: 783 ENFEAHLSDFGIAKSIPA-SKTHASTYVLGTIGYIDP 818

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
255585401	843	serine-threonine protein kinase, plant-t	0.981	0.613	0.434	1e-117
298204751	1979	unnamed protein product [Vitis vinifera]	0.937	0.249	0.487	1e-116
359483198	1087	PREDICTED: probable LRR receptor-like se	0.941	0.456	0.446	1e-110
224139658	1019	predicted protein [Populus trichocarpa]	0.943	0.487	0.415	1e-108
359485453	1202	PREDICTED: probable LRR receptor-like se	0.943	0.413	0.429	1e-107
359483683	1228	PREDICTED: LRR receptor-like serine/thre	0.943	0.404	0.415	1e-106
224116832	1061	predicted protein [Populus trichocarpa]	0.941	0.467	0.408	1e-106
359483675	1250	PREDICTED: LRR receptor-like serine/thre	0.988	0.416	0.401	1e-104
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.924	0.342	0.416	1e-104
255572272	1089	serine-threonine protein kinase, plant-t	0.941	0.455	0.415	1e-104

>gi|255585401|ref|XP_002533396.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526770|gb|EEF28996.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 271/623 (43%), Positives = 359/623 (57%), Gaps = 106/623 (17%)

Query: 6   LNNRQLDGGMTGDVCYRICTID----SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS 61
           +N  QL G +   + Y +  ++    ++N+ +G +  +I N S L + +  +N + G + 
Sbjct: 106 INVNQLSGHLPSTLGYGLPNLEELYITRNQFIGTLPPSISNASKLTILESSSNSLSGPIP 165

Query: 62  SIV------DELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS 115
             +        L+L+DN   S T EL FL+S++ CK L++L +  NPL+  LP  +GN S
Sbjct: 166 DTLCNLKNLKRLNLADN---SFTDELGFLASLARCKELRRLVLIGNPLNSTLPTSIGNLS 222

Query: 116 QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE 175
            S+E+  +  CNI G I  EIG L++LI++ L  N+L GSI +T+G LQKLQ L   GN 
Sbjct: 223 -SIEYFNVQSCNIKGNIPSEIGVLSNLITLHLQNNELVGSIPVTIGGLQKLQRLYLHGNL 281

Query: 176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNL 234
           L GSIP  +CHL+ L +L L  N L G +P CFG+L +LR LHL SN  TS IP  LW+L
Sbjct: 282 LYGSIPTDICHLSNLGELFLSNNSLFGPLPACFGDLISLRILHLHSNNFTSGIPFSLWSL 341

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNR 294
           KD+L L+  SN   G +P  IGNLKVLT++DFS N+L G IP  I  L++L  LSL HNR
Sbjct: 342 KDVLELNLSSNSLSGHIPLSIGNLKVLTQVDFSYNSLSGIIPNAIGSLRNLMSLSLTHNR 401

Query: 295 LQGSIPNSFDDLVSLESLDLSN------------------------NNLSEIIP------ 324
            +G IP  F +L+SLESLDLS+                        NNL   +P      
Sbjct: 402 FEGPIPEPFGELISLESLDLSSNNLSGKIPKSLEQLKYLKYLNVSFNNLDGEVPNKGAFA 461

Query: 325 ------------LSLEKLLYL---------------NILLIVVV---ILALKFGLIS-RC 353
                       L   +LL L                +LLI V+   IL + F L+  RC
Sbjct: 462 NFSASSFLGNLALCGSRLLPLMPCKNNTHGGSKTSTKLLLIYVLPASILTIAFILVFLRC 521

Query: 354 QKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFA 413
           QK   +L NV ++    + RR S+QEL +ATDGF A+NL+G G +GSVYK RL+DG   A
Sbjct: 522 QKVKLELENVMDIITVGTWRRISFQELEQATDGFCASNLLGAGGYGSVYKGRLEDGTNVA 581

Query: 414 IKVFHFS-----------------------------CSNEDFRALVLEYTTNGSLEKVLY 444
           IKVF+                               CSN+DF+A+VLEY  NGSLEK LY
Sbjct: 582 IKVFNLGVEGAFKIFDTECEVMSSIRHRNLVKIISCCSNQDFKAIVLEYMPNGSLEKWLY 641

Query: 445 SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           S NY L+I QRL +MIDV SALEYLH G+S PI+HCDLKP N LLD ++V H++DFG+AK
Sbjct: 642 SHNYCLNIQQRLEVMIDVASALEYLHHGFSAPIVHCDLKPSNVLLDQDMVGHVADFGMAK 701

Query: 505 LLTGEDQSMTQTQTLAIIGYMAP 527
           LL GE   +TQT+TLA IGYMAP
Sbjct: 702 LL-GEGDLITQTKTLATIGYMAP 723

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 271/556 (48%), Positives = 338/556 (60%), Gaps = 62/556 (11%)

Query: 30   NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLT--SSTPEL 81
            N L GI+  +I N S L+  D   N + G +         ++ L+L  N L   S   EL
Sbjct: 827  NWLSGIIPSSIGNASKLRSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYIQEL 886

Query: 82   SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
            SFL+S++NCK L+ L +S NPL G LP  +GN S SL+    + C + G I  EIGNL++
Sbjct: 887  SFLTSLTNCKRLRILYLSFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSN 946

Query: 142  LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
            L  + L  N L G+I  ++G+LQKLQ L    N+L+GSIPN +C L  L +L L  N+LS
Sbjct: 947  LYLLSLNNNDLTGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLS 1006

Query: 202  GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
            GSIP C G LT LR+L+L SN+L S IPS LW+L  IL LD  SN  VG LPS +GNLKV
Sbjct: 1007 GSIPACLGELTFLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKV 1066

Query: 261  LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
            L +ID SRN L G+IP+ I GL+ L  LSL HNR +G I +SF +L SLE +DLS+N L 
Sbjct: 1067 LVKIDLSRNQLSGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALF 1126

Query: 321  EIIPLSLEKLLYLNILLIVVVILALKFGLI------------------SRCQKRATKLPN 362
              IP SLE L+YL  L +    L   +G I                  + C+KR   LP 
Sbjct: 1127 GEIPKSLEGLVYLKYLDVSFNGL---YGEIPPEGPFANFSAESFMMNKALCRKRNAVLPT 1183

Query: 363  VSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF--- 419
             S     A+ RR SYQE+ +AT+GFSA NL+GRGS GSVY+  L DG   AIKVF+    
Sbjct: 1184 QSESLLTATWRRISYQEIFQATNGFSAGNLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEE 1243

Query: 420  --------------------------SCSNE--DFRALVLEYTTNGSLEKVLYSSNYILD 451
                                      SCSN   DF+ALVLEY  NGSLE+ LYS NY LD
Sbjct: 1244 AAFKSFDAECEVMHHIRHRNLIKIVSSCSNSYIDFKALVLEYVPNGSLERWLYSHNYCLD 1303

Query: 452  ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
            ILQRLNIMIDV  A+EYLH G STP++HCDLKP N LLD++   H+ DFGIAKLL  E++
Sbjct: 1304 ILQRLNIMIDVALAMEYLHHGCSTPVVHCDLKPSNILLDEDFGGHVGDFGIAKLLR-EEE 1362

Query: 512  SMTQTQTLAIIGYMAP 527
            S+ +TQTLA IGYMAP
Sbjct: 1363 SIRETQTLATIGYMAP 1378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 269/602 (44%), Positives = 337/602 (55%), Gaps = 106/602 (17%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLT--SSTPEL 81
           N L GI+  +I N S L+  D   N + G +         ++ L+L  N L   S   EL
Sbjct: 375 NWLSGIIPSSIGNASKLRSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYIQEL 434

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
           SFL+S++NCK L+ L +S NPL G LP  +GN S SL+    + C + G I  EIGNL++
Sbjct: 435 SFLTSLTNCKRLRILYLSFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSN 494

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
           L  + L  N L G+I  ++G+LQKLQ L    N+L+GSIPN +C L  L +L L  N+LS
Sbjct: 495 LYLLSLNNNDLTGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLS 554

Query: 202 GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           GSIP C G LT LR+L+L SN+L S IPS LW+L  IL LD  SN  VG LPS +GNLKV
Sbjct: 555 GSIPACLGELTFLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKV 614

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG----------------------- 297
           L +ID SRN L G+IP+ I GL+ L  LSL HNR +G                       
Sbjct: 615 LVKIDLSRNQLSGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALF 674

Query: 298 -SIPNSFDDLVSLESLDLSNNNLSEIIP-------LSLEKLLY----------------- 332
             IP S + LV L+ LD+S N L   IP        S E  +                  
Sbjct: 675 GEIPKSLEGLVYLKYLDVSFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRT 734

Query: 333 ----------------LNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFS 376
                           L  +L  ++ LAL F + +RC+KR   LP  S     A+ RR S
Sbjct: 735 GTRWSTTISWLLLKYILPAILSTLLFLALIF-VWTRCRKRNAVLPTQSESLLTATWRRIS 793

Query: 377 YQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------- 419
           YQE+ +AT+GFSA NL+GRGS GSVY+  L DG   AIKVF+                  
Sbjct: 794 YQEIFQATNGFSAGNLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMH 853

Query: 420 ------------SCSNE--DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSA 465
                       SCSN   DF+ALVLEY  NGSLE+ LYS NY LDILQRLNIMIDV  A
Sbjct: 854 HIRHRNLIKIVSSCSNSYIDFKALVLEYVPNGSLERWLYSHNYCLDILQRLNIMIDVALA 913

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
           +EYLH G STP++HCDLKP N LLD++   H+ DFGIAKLL  E++S+ +TQTLA IGYM
Sbjct: 914 MEYLHHGCSTPVVHCDLKPSNILLDEDFGGHVGDFGIAKLLR-EEESIRETQTLATIGYM 972

Query: 526 AP 527
           AP
Sbjct: 973 AP 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/599 (41%), Positives = 333/599 (55%), Gaps = 102/599 (17%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTS--STPEL 81
           N + G +   + N+S L++ D+  N + G +         +  LSL  N  T+  S+  L
Sbjct: 302 NGITGSMPRFLGNMSRLEILDLSYNKMTGNVLQEFGNLRALQVLSLQSNSFTNHPSSQTL 361

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
           +F++S++N + LK+L I  NPLDG LP  VGN S  L   ++    + G I  EIGNL++
Sbjct: 362 NFITSLTNSRQLKELHIGDNPLDGMLPNSVGNLSSFLTKFYVYASKLKGNIPGEIGNLSN 421

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
           LI + L  N L G I  T+G L+K+Q L    N L GSIP+ +C    L  + L  N LS
Sbjct: 422 LIVLSLEENSLMGPIPTTVGGLRKIQVLYLHKNNLNGSIPSDICLARRLVDITLNNNVLS 481

Query: 202 GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           G IP+C GNLT+LRNL+L  N L+S IP  LW+LKD+L L+  SN   G LPS++G ++ 
Sbjct: 482 GEIPSCIGNLTSLRNLYLHFNILSSTIPMALWSLKDLLILNLHSNFLYGSLPSQVGEMEA 541

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
              I  S N L G+IP+TI  L++L   SL  N  QGSIP +F  LVSLE LDLS NNLS
Sbjct: 542 AIGIRLSSNQLSGNIPSTIGSLQNLIRFSLSKNSFQGSIPEAFGGLVSLELLDLSQNNLS 601

Query: 321 -----------------------------------------------------EIIPLSL 327
                                                                ++ P S+
Sbjct: 602 GEIPKSLEALRYLEFFSVSFNGLQGEIPRGGPFANFTARSFIMNKGLCGPSRLQVPPCSI 661

Query: 328 E---------KLLYLNILLIVVVILALKF-GLISRCQKRATKLPNVSNMQPQASRRRFSY 377
           E         +LL  ++  +  ++L + F  L+  C++R  K P    +   A +RR SY
Sbjct: 662 ESRKDSKTKSRLLRFSLPTVASILLVVAFIFLVMGCRRRYRKDPIPEALPVTAIQRRISY 721

Query: 378 QELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF------------------ 419
            ELL AT+ F  +NL+G GSFGSVY+ RL+DG+  A+K+F+                   
Sbjct: 722 LELLHATNEFHESNLLGIGSFGSVYQGRLRDGLNVAVKIFNLQLQRAFRSFDTECEIMRN 781

Query: 420 -----------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                      SCSN DF+ALVLEY   GSLEK LYS NY LDI+QR+NIMIDV SALEY
Sbjct: 782 IRHRNLVKIICSCSNLDFKALVLEYMPKGSLEKWLYSHNYCLDIIQRVNIMIDVASALEY 841

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LH GY +P++HCDLKP N LLD+++VAH+ DFGIAKLL GE++S  QT+TLA IGYMAP
Sbjct: 842 LHHGYPSPVVHCDLKPSNVLLDEDMVAHVCDFGIAKLL-GENESFAQTRTLATIGYMAP 899

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 257/598 (42%), Positives = 333/598 (55%), Gaps = 101/598 (16%)

Query: 30   NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDEL------SLSDNYLTS--STPEL 81
            N+  GI+ ++I N+S L   D+ +N+ +G +   +  L       LS N LT+  S  EL
Sbjct: 490  NEFSGIIPMSISNMSNLISLDISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTNEHSASEL 549

Query: 82   SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
            +FL+S++NC +L+ L IS NPL G +P  +GN S SLE I+ SDC + G I   I NLT+
Sbjct: 550  AFLTSLTNCIFLRTLSISDNPLKGMIPNSLGNLSISLEIIYASDCQLRGTIPTGISNLTN 609

Query: 142  LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
            LI + L  N L G I    G+LQKLQ LS   N + GSIP+ LCHL  L  LDL  NKLS
Sbjct: 610  LIGLRLDDNDLTGLIPTPFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLAFLDLSSNKLS 669

Query: 202  GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
            G+IP+C GNLT LRN++L SN L S IPS L NL+ +L L+  SN     LP ++GN+K 
Sbjct: 670  GTIPSCSGNLTGLRNVYLHSNGLASEIPSSLCNLRGLLVLNLSSNFLNSQLPLQVGNMKS 729

Query: 261  LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSL----------- 309
            L  +D S+N   G+IP+TI  L++L  L L HN+LQG IP +F DLVSL           
Sbjct: 730  LVALDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHIPPNFGDLVSLESLDLSGNNLS 789

Query: 310  -------------ESLDLSNNNLSEIIP---------------------------LSLEK 329
                         E L++S N L   IP                           ++ EK
Sbjct: 790  GTIPKSLEHLKYLEYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRFQVMACEK 849

Query: 330  LLYLN---ILLIVVVILALKFG------LISRCQKRATK--LPNVSNMQPQASRRRFSYQ 378
                N   +LL  +V L++         L  + ++R TK   P   ++      R   +Q
Sbjct: 850  DSRKNTKSLLLKCIVPLSVSLSTIILVVLFVQWKRRQTKSETPIQVDLSLPRMHRMIPHQ 909

Query: 379  ELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF------------------- 419
            ELL AT+ F  +NLIG+GS G VYK  L DG+  A+KVF+                    
Sbjct: 910  ELLYATNYFGEDNLIGKGSLGMVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMRNI 969

Query: 420  ----------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL 469
                      SCSN DF+ALVLEY  NGSLEK LYS NY LD +QRL IMIDV S LEYL
Sbjct: 970  RHRNLAKIISSCSNLDFKALVLEYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYL 1029

Query: 470  HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            H  YS P++HCDLKP N LLDD++VAH+SDFGIAKLL G  + M +T+TL  +GYMAP
Sbjct: 1030 HHYYSNPVVHCDLKPSNVLLDDDMVAHISDFGIAKLLMG-SEFMKRTKTLGTVGYMAP 1086

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/599 (41%), Positives = 333/599 (55%), Gaps = 102/599 (17%)

Query: 30   NKLVGIVSITIFNLSTLKVFDVDNNYVLGR----LSSI--VDELSLSDNYLTSS--TPEL 81
            N+  G + ++I N+S L    + +NY  G     LS++  ++ L+L+ N LT    T E+
Sbjct: 519  NEFSGTIPVSISNMSKLIRLHISDNYFTGNVPKDLSNLRKLEVLNLAGNQLTDEHLTSEV 578

Query: 82   SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
             FL+S++NCK+L+ L I  NPL G LP  +GN S +LE    S C+  G I   IGNLT+
Sbjct: 579  GFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGTIPTGIGNLTN 638

Query: 142  LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
            LI +DLG N L GSI  TLG LQKLQ L   GN ++GSIPN LCHL  L  L L  NKLS
Sbjct: 639  LIWLDLGANDLTGSIPTTLGHLQKLQRLYIAGNRIQGSIPNDLCHLKNLGYLHLSSNKLS 698

Query: 202  GSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
            GSIP+CFG+L ALR L LDSN L  +IP   W+L+D++ L   SN   G LP ++GN+K 
Sbjct: 699  GSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLMVLSLSSNFLTGNLPPEVGNMKS 758

Query: 261  LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD--------------- 305
            +T +D S+N + G IP  +  L++L  L L  N+LQGSIP  F D               
Sbjct: 759  ITTLDLSKNLISGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESMDLSQNNLF 818

Query: 306  ---------LVSLESLDLSNNNLSEIIP-------LSLEKLLY----------------- 332
                     L+ L+ L++S N L   IP        + E  ++                 
Sbjct: 819  GTIPKSLEALIYLKHLNVSFNKLQGEIPNGGPFVNFTAESFIFNEALCGAPHFQVIACDK 878

Query: 333  -------------LNILLIVV--VILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSY 377
                         L  +L+ V   +  + F ++   ++  T++P   +     +  + S 
Sbjct: 879  NNRTQSWKTKSFILKYILLPVGSAVTLVAFIVLWIRRRDNTEIPAPIDSWLPGAHEKISQ 938

Query: 378  QELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------- 420
            Q+LL AT+GF  +NLIG+GS G VYK  L +G+  AIKVF+                   
Sbjct: 939  QQLLYATNGFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQG 998

Query: 421  ------------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                        CSN DF+ALVLEY   GSL+K LYS NY LD+ QRLNIMIDV SALEY
Sbjct: 999  ICHRNLIRIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLFQRLNIMIDVASALEY 1058

Query: 469  LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            LH   S+ ++HCDLKP N LLD+N+VAH++DFGIA+LLT E +SM QT+TL  IGYMAP
Sbjct: 1059 LHHDCSSLVVHCDLKPSNVLLDNNMVAHVADFGIARLLT-ETESMQQTKTLGTIGYMAP 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/602 (40%), Positives = 328/602 (54%), Gaps = 106/602 (17%)

Query: 29  QNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV------DELSLSDNYLTSSTPELS 82
           +N+L G +  +I N S L V D+  N   GR+  ++       +L+L++N LTS +    
Sbjct: 341 KNELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTSKSLRSE 400

Query: 83  FLSSMS--NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                S  NC+ L  L  + NPL G LP  +GN S SLE ++  DC I G I   IGNL+
Sbjct: 401 LSFLSSLSNCRSLAYLRFNGNPLRGRLPVSIGNLSASLEELYAFDCRIIGNIPRGIGNLS 460

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
           +LI + L  N+L G+I   +G+L+ LQ  S   N+L+G IPN +CHL  L  L L  N  
Sbjct: 461 NLIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGF 520

Query: 201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           SGS+P C  N+T+LR L+L SN  TSIP+  W+LKD+L ++   N   G LP +IGNLKV
Sbjct: 521 SGSLPACLSNITSLRELYLGSNRFTSIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKV 580

Query: 261 LTRIDFSRNNLLGDIPTTIQGLK------------------------SLQFLSLGHNRLQ 296
           +T IDFS N L GDIPT+I  L+                        SL+FL L  N L 
Sbjct: 581 VTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLDLSRNSLS 640

Query: 297 GSIPNSFDDLVSLESLDLSNNNLS-EII-------------------------------- 323
           G+IP S + LV L++ ++S N L  EI+                                
Sbjct: 641 GAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRMQVPPCKS 700

Query: 324 ---------PLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRR 374
                    P        +  +  ++++LAL   +  R  KR  KL    +  P A+ R+
Sbjct: 701 ISTHRQSKRPREFVIRYIVPAIAFIILVLALAVIIFRRSHKR--KLSTQEDPLPPATWRK 758

Query: 375 FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF--------------- 419
            SY EL RAT+GF+  NL+G GS GSVYK  L DG+  A+KVFH                
Sbjct: 759 ISYHELYRATEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFDSECEV 818

Query: 420 --------------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSA 465
                         SC N DF+AL+LE+  +GSLEK LYS NY LDILQRLNIMIDV SA
Sbjct: 819 LRMLRHRNLVKIISSCCNLDFKALILEFIPHGSLEKWLYSHNYYLDILQRLNIMIDVASA 878

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
           LEYLH G + P++HCDLKP N L+++++VAH+SDFGI++LL GE  ++TQT TLA IGYM
Sbjct: 879 LEYLHHGCTRPVVHCDLKPSNVLINEDMVAHVSDFGISRLL-GEGDAVTQTLTLATIGYM 937

Query: 526 AP 527
           AP
Sbjct: 938 AP 939

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/627 (40%), Positives = 343/627 (54%), Gaps = 106/627 (16%)

Query: 6    LNNRQLDGGMTGDVCYRICTIDS----QNKLVGIVSITIFNLSTLKVFDVDNNYVLGR-- 59
            L    L GG+   +   +  ++      N+  G + ++I N+S L    + +NY +G   
Sbjct: 491  LAQNHLSGGLPSSISTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFIGNVP 550

Query: 60   --LSSI--VDELSLSDNYLTSS--TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGN 113
              LS++  ++ L+L+ N LT    T E+ FL+S++NCK+L+ L I  NPL G LP  +GN
Sbjct: 551  KDLSNLRKLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGN 610

Query: 114  FSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRG 173
             S +LE    S C+  G I   IGNLT+LI +DLG N L GSI  TLG+LQKLQ L   G
Sbjct: 611  LSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQRLYIAG 670

Query: 174  NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILW 232
            N ++GSIPN L HL  L  L L  NKLSGSIP+CFG+L ALR L LDSN L  +IP   W
Sbjct: 671  NRIQGSIPNDLFHLKNLGYLHLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFW 730

Query: 233  NLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH 292
            +L+D+L L   SN   G LP ++GN+K +T +D S+N + G IP  +  L++L  L L  
Sbjct: 731  SLRDLLVLSLSSNFLTGNLPPEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLCLSQ 790

Query: 293  NRLQGSIPNSFDDLVS------------------------LESLDLSNNNLSEIIP---- 324
            N+LQGSIP  F DL+S                        L+ L++S N L   IP    
Sbjct: 791  NKLQGSIPVEFGDLLSLESMDLSQNNLSGTIPKSLEALIYLKHLNVSFNKLQGEIPDGGP 850

Query: 325  ---LSLEKLLY------------------------------LNILLIVV--VILALKFGL 349
                + E  ++                              L  +L+ V  ++  + F +
Sbjct: 851  FVNFTAESFIFNEALCGAPHFQVIACDKNNHTQSWKTKSFILKYILLPVGSIVTLVAFIV 910

Query: 350  ISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDG 409
            +   ++  T++P   +     +  + S Q+LL AT+ F  +NLIG+GS G VYK  L +G
Sbjct: 911  LWIRRQDNTEIPAPIDSWLPGAHEKISQQQLLYATNDFGEDNLIGKGSLGMVYKGVLSNG 970

Query: 410  MEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTNGSLE 440
            +  AIKVF+                               CSN DF+ALVLEY   GSL+
Sbjct: 971  LTVAIKVFNLEFQGALRSFDSECEVMQGICHRNLIRIITCCSNLDFKALVLEYMPKGSLD 1030

Query: 441  KVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF 500
            K LYS NY LD+ QRLNIMIDV  ALEYLH   S+ ++HCDLKP N LLD+N+VAH++DF
Sbjct: 1031 KWLYSHNYFLDLFQRLNIMIDVALALEYLHHDCSSLVVHCDLKPSNVLLDNNMVAHVADF 1090

Query: 501  GIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            GIA+LLT E +SM QT+TL  IGYMAP
Sbjct: 1091 GIARLLT-ETESMQQTKTLGTIGYMAP 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/608 (41%), Positives = 324/608 (53%), Gaps = 121/608 (19%)

Query: 30   NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTS--STPEL 81
            N+  GI+ ++I N+S L V D+  N+  G +         ++ L+L  N LT   ST E+
Sbjct: 491  NEFSGIIPMSISNMSELTVLDIWANFFTGDVPKDLGNLRRLEFLNLGFNQLTDEHSTSEV 550

Query: 82   SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
             FL+S++NCK+L++L I  NPL G LP  +GN S SLE    S C   G I   IGNL +
Sbjct: 551  GFLTSLTNCKFLRRLWIEDNPLKGILPNSLGNLSISLESFDASACQFKGTIPTGIGNLIN 610

Query: 142  LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
            LI + L  N L G I I+ G LQKLQ+ +  GN + GSIP+VLCHL  L  LDL  NKLS
Sbjct: 611  LIDLRLNDNDLTGLIPISFGHLQKLQWFAISGNRIHGSIPSVLCHLRNLGYLDLSSNKLS 670

Query: 202  GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
            G+IP CFGNLTALRN+ L SN L S IPS LW L+D+L L+  SN     LP ++GN+K 
Sbjct: 671  GTIPGCFGNLTALRNISLHSNGLASEIPSSLWTLRDLLVLNLSSNFLNCQLPLEVGNMKS 730

Query: 261  LTRIDFSRN------------------------------------------------NLL 272
            L  +D S+N                                                N  
Sbjct: 731  LLVLDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHMPPNFGALVSLEYLDLSGNNFS 790

Query: 273  GDIPTTIQGLKSLQFLSLGHNRLQGSIPN-------SFDDLVSLESL------------- 312
            G IPT+++ LK L++L++  N+LQG IPN       + +  +S  +L             
Sbjct: 791  GTIPTSLEALKYLKYLNVSFNKLQGEIPNRGPFANFTAESFISNLALCGAPRFQVMACEK 850

Query: 313  DLSNNN----LSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQP 368
            D   N     L  I+PLS+          +  +IL + F L  R Q  +     V  + P
Sbjct: 851  DARRNTKSLLLKCIVPLSVS---------LSTMILVVLFTLWKRRQTESESPVQVDLLLP 901

Query: 369  QASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF--------- 419
            +   R  S+QELL AT  F   NLIG+GS G VYK  L DG+  A+KVF+          
Sbjct: 902  RM-HRLISHQELLYATSYFGEENLIGKGSLGMVYKGVLSDGLIVAVKVFNLELHGAFKSF 960

Query: 420  --------------------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIM 459
                                SCSN DF+ALVLEY  N SLEK LYS NY LD +QRL IM
Sbjct: 961  EVECEVMRNIRHRNLAKIISSCSNLDFKALVLEYMPNESLEKWLYSHNYCLDFIQRLKIM 1020

Query: 460  IDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
            IDV S LEYLH  YS P++HCDLKP N LLDD++VAH+SDFGIAKLL G  + M +T+TL
Sbjct: 1021 IDVASGLEYLHHDYSNPVVHCDLKPSNVLLDDDMVAHISDFGIAKLLMGS-EFMKRTKTL 1079

Query: 520  AIIGYMAP 527
              IGYMAP
Sbjct: 1080 GTIGYMAP 1087

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/602 (41%), Positives = 324/602 (53%), Gaps = 106/602 (17%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDEL------SLSDNYLTS--STPEL 81
           NKL G +   I N S L + ++ +N   G +   + +L       L  N L+S  ++ EL
Sbjct: 371 NKLSGPIPSYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKTSQEL 430

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
           +  SS+ NC+ LK L +S NPLDG+LP  VGN S SLE    SD  I G + E IGNL+ 
Sbjct: 431 TIFSSLKNCQNLKYLWLSYNPLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSS 490

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
           L  ++LG N L G I  T+G L+ LQ L   GN+L+GSIP+ LC L  L+ L+L GNKLS
Sbjct: 491 LTRLNLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLS 550

Query: 202 GSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           GSIPTCF NLT+LRNL L SN   S I S LW LKDIL ++  SN   G LPS+I NL+ 
Sbjct: 551 GSIPTCFSNLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRA 610

Query: 261 LTRIDFSRNNLLGDIPTTIQGL------------------------KSLQFLSLGHNRLQ 296
           +  I+ S+N L G+IP +I GL                        KSL+FL L  N L 
Sbjct: 611 VYMINISKNQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLS 670

Query: 297 GSIPNSFDDLVSLESLDLSNNNLSEIIP-------LSLEKLL------------------ 331
           G IP S D+L+ L+  ++S N L   IP        S +  +                  
Sbjct: 671 GMIPKSLDNLLYLKYFNVSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKD 730

Query: 332 -----------------YLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRR 374
                             L  ++  V +LA    L   C+++A K     +     + RR
Sbjct: 731 DNSRATETPGSKIVLRYVLPAIVFAVFVLAFVIMLKRYCERKA-KFSIEDDFLALTTIRR 789

Query: 375 FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF--------------- 419
            SY EL  AT+GF  +N +G GSFGSVYK  L DG   A KVF+                
Sbjct: 790 ISYHELQLATNGFQESNFLGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEV 849

Query: 420 --------------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSA 465
                         SCS  +F+ALVLE+  N SLEK LYS +Y L+ LQRLNIM+DV S 
Sbjct: 850 LRNLRHRNLVKIITSCSGPNFKALVLEFMPNWSLEKWLYSDDYFLNNLQRLNIMLDVASV 909

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
           LEYLH GY+ P+ HCD+KP N LL++++VA L+DFGI+KLL GE+ S+ QT TLA IGYM
Sbjct: 910 LEYLHHGYTIPMAHCDIKPSNVLLNEDMVAFLADFGISKLL-GEEGSVMQTMTLATIGYM 968

Query: 526 AP 527
           AP
Sbjct: 969 AP 970

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.514	0.264	0.370	5.7e-66
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.516	0.269	0.347	7.5e-65
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.567	0.290	0.302	1.9e-62
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.516	0.269	0.319	2.8e-62
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.516	0.269	0.325	4.7e-62
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.516	0.265	0.352	8.5e-61
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.514	0.276	0.338	1.3e-53
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.504	0.237	0.362	2.3e-51
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.554	0.268	0.331	4.3e-51
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.555	0.300	0.322	1.5e-50

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 5.7e-66, Sum P(3) = 5.7e-66
 Identities = 104/281 (37%), Positives = 156/281 (55%)

Query:    30 NKLVGIVSITIFNLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTS-STPEL 81
             N   G +  T+ N+S+L+  D+ +N++        GRL +++  L L++N L + S+ +L
Sbjct:   284 NSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLL-LLGLNNNSLGNYSSGDL 342

Query:    82 SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
              FL +++NC  L+ L++  N L G LP  + N S  L  + +    ISG I   IGNL  
Sbjct:   343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402

Query:   142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
             L ++DLG N L G +  +LG+L +L+ +    N L G IP+ L +++ L  L L  N   
Sbjct:   403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462

Query:   202 GSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
             GSIP+  G+ + L +L+L +N+L  SIP  L  L  ++ L+   NL VGPL   IG LK 
Sbjct:   463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKF 522

Query:   261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
             L  +D S N L G IP T+    SL+FL L  N   G IP+
Sbjct:   523 LLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD 563

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 7.5e-65, Sum P(3) = 7.5e-65
 Identities = 97/279 (34%), Positives = 145/279 (51%)

Query:    30 NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI--VDELSL---SDNYLTS-STPELSF 83
             N   G +  T+ N+STL+   ++ N + G + +   V  L L     N L S S+ +L F
Sbjct:   269 NYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLEF 328

Query:    84 LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI 143
             L+S++NC  L+ L I RN L G LP  + N S  L  + +    ISG I  +IGNL +L 
Sbjct:   329 LTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQ 388

Query:   144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
              + L  N L+G +  +LGKL  L++LS   N L G IP  + ++ +L  LDL  N   G 
Sbjct:   389 KLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGI 448

Query:   204 IPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
             +PT  GN + L  L +  N+L  +IP  +  ++ +L LD   N  +G LP  IG L+ L 
Sbjct:   449 VPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLG 508

Query:   263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
              +    N L G +P T+    +++ L L  N   G IP+
Sbjct:   509 TLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD 547

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.9e-62, Sum P(3) = 1.9e-62
 Identities = 94/311 (30%), Positives = 156/311 (50%)

Query:     3 SEKLNNRQLDGGMTGDVCYRICTID----SQNKLVGIVSITIFNLSTLKVFDVDNNYVLG 58
             S  L +    G +  D  Y +  +       N+  G +  T+ N+S+L+ FD+ +NY+ G
Sbjct:   245 SLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSG 304

Query:    59 RLSSIVDEL------SLSDNYL-TSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVV 111
              +     +L       + +N L  +S+  L F+ +++NC  L+ LD+  N L G LP  +
Sbjct:   305 SIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASI 364

Query:   112 GNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF 171
              N S +L  +++    ISG I  +IGNL  L  + L  N L+G + ++ GKL  LQ +  
Sbjct:   365 ANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDL 424

Query:   172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSI 230
               N + G IP+   ++  L +L L  N   G IP   G    L +L +D+N L  +IP  
Sbjct:   425 YSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQE 484

Query:   231 LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSL 290
             +  +  + Y+D  +N   G  P ++G L++L  +  S N L G +P  I G  S++FL +
Sbjct:   485 ILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFM 544

Query:   291 GHNRLQGSIPN 301
               N   G+IP+
Sbjct:   545 QGNSFDGAIPD 555

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.8e-62, Sum P(3) = 2.8e-62
 Identities = 90/282 (31%), Positives = 145/282 (51%)

Query:    29 QNKLVGIVSITIFNLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTSST-PE 80
             +N LVG +  T+ N+STL+ F ++ N +        G++ S+   L LS+N L S T  +
Sbjct:   268 ENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSL-QYLDLSENPLGSYTFGD 326

Query:    81 LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
             L F+ S++NC +L+ L +    L G LP  + N S  L  + +   +  G I ++IGNL 
Sbjct:   327 LEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLI 386

Query:   141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
              L  + LG N L G +  +LGKL +L  LS   N + G IP+ + +L  L  L L  N  
Sbjct:   387 GLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSF 446

Query:   201 SGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
              G +P   G  + + +L +  N+L  +IP  +  +  ++ L    N   G LP+ IG+L+
Sbjct:   447 EGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQ 506

Query:   260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
              L ++    N   G +P T+    +++ L L  N   G+IPN
Sbjct:   507 NLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN 548

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 4.7e-62, Sum P(3) = 4.7e-62
 Identities = 91/280 (32%), Positives = 144/280 (51%)

Query:    30 NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELS------LSDNYLTS-STPELS 82
             N L G +  T+ N+STL++F +  N + G +S    +L       L++N L S S  +L+
Sbjct:   269 NFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLA 328

Query:    83 FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
             FL +++NC +L  L +S N L G LP  + N S  L  + +    I G I  +IGNL  L
Sbjct:   329 FLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGL 388

Query:   143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
              S+ L  N L G +  +LG L  L  L    N   G IP+ + +L  L +L L  N   G
Sbjct:   389 QSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEG 448

Query:   203 SIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL 261
              +P   G+ + + +L +  N+L  +IP  +  +  +++L+  SN   G LP+ IG L+ L
Sbjct:   449 IVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNL 508

Query:   262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
               +    NNL G +P T+    S++ + L  N   G+IP+
Sbjct:   509 VELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD 548

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 366 (133.9 bits), Expect = 8.5e-61, Sum P(3) = 8.5e-61
 Identities = 99/281 (35%), Positives = 147/281 (52%)

Query:    30 NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDEL-SLSDNYL------TSSTPELS 82
             N+  G +  ++ N S L V  +  N   G ++S    L +L++ YL      T    +  
Sbjct:   283 NRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWG 342

Query:    83 FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
             F+S ++NC  L+ L++  N L G LP    N S SL F+ +    I+G I ++IGNL  L
Sbjct:   343 FISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGL 402

Query:   143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
               + L  N   GS+  +LG+L+ L  L    N L GSIP  + +L  L  L L  NK SG
Sbjct:   403 QHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSG 462

Query:   203 SIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDI-LYLDFWSNLFVGPLPSKIGNLKV 260
              IP    NLT L +L L +N L+  IPS L+N++ + + ++   N   G +P +IG+LK 
Sbjct:   463 WIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKN 522

Query:   261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
             L       N L G IP T+   + L++L L +N L GSIP+
Sbjct:   523 LVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPS 563

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
 Identities = 96/284 (33%), Positives = 145/284 (51%)

Query:    30 NKLVGIVSITIFNLSTLKVFDVDNNYVLGRL-SSIVDE------LSLSDNYLTSSTPELS 82
             NKL G V  ++ N + LK  D+++N + G L S ++ +      L LS N+  S     +
Sbjct:   201 NKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTN 260

Query:    83 ---FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
                F +S++N   L++L+++ N L G +   V + S +L  I +    I G I  EI NL
Sbjct:   261 LEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNL 320

Query:   140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
              +L  ++L  N L+G I   L KL KL+ +    N L G IP  L  +  L  LD+  N 
Sbjct:   321 LNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNN 380

Query:   200 LSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKI-GN 257
             LSGSIP  FGNL+ LR L L  N L+ ++P  L    ++  LD   N   G +P ++  N
Sbjct:   381 LSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSN 440

Query:   258 LKVLTR-IDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
             L+ L   ++ S N+L G IP  +  +  +  + L  N L G IP
Sbjct:   441 LRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIP 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
 Identities = 102/281 (36%), Positives = 153/281 (54%)

Query:    28 SQNKLVGIVSITIFNLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTSSTPE 80
             SQNKL G +  ++ NL  L V  +  NY+       LG + S+ D L+LS N LT S P 
Sbjct:   182 SQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTD-LALSQNKLTGSIP- 239

Query:    81 LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                 S++ N K L  L +  N L G +P  +GN  +S+  + +S   ++G I   +GNL 
Sbjct:   240 ----STLGNLKNLMVLYLYENYLTGVIPPEIGNM-ESMTNLALSQNKLTGSIPSSLGNLK 294

Query:   141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
             +L  + L  N L G I   LG ++ +  L    N+L GSIP+ L +L  L  L L  N L
Sbjct:   295 NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYL 354

Query:   201 SGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
             +G IP   GN+ ++ +L L++N+LT SIPS   NLK++ YL  + N   G +P ++GN++
Sbjct:   355 TGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNME 414

Query:   260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
              +  +D S+N L G +P +      L+ L L  N L G+IP
Sbjct:   415 SMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIP 455

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 4.3e-51, Sum P(3) = 4.3e-51
 Identities = 100/302 (33%), Positives = 153/302 (50%)

Query:     6 LNNRQLDGGMTGDVCYRICTID---SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS 62
             L+   L G +   V   I  +D   S N L G +   + N S L+   ++NN + G L +
Sbjct:   155 LDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPA 214

Query:    63 IVDEL-SLSDNYLTSST--PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
              +  L +L + ++++++    L F SS  NCK L  LD+S N   G +P  +GN S SL 
Sbjct:   215 SLYLLENLGELFVSNNSLGGRLHFGSS--NCKKLVSLDLSFNDFQGGVPPEIGNCS-SLH 271

Query:   120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
              + M  CN++G I   +G L  +  IDL  N+L+G+I   LG    L+ L    N+L+G 
Sbjct:   272 SLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGE 331

Query:   180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDIL 238
             IP  L  L  L  L+L  NKLSG IP     + +L  + + +N LT  +P  +  LK + 
Sbjct:   332 IPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLK 391

Query:   239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
              L  ++N F G +P  +G  + L  +D   N   G+IP  +   + L+   LG N+L G 
Sbjct:   392 KLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGK 451

Query:   299 IP 300
             IP
Sbjct:   452 IP 453

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
 Identities = 101/313 (32%), Positives = 161/313 (51%)

Query:     2 WSEKLNNRQLDGG-MTGDVCYRICTIDS-------QNKLVGIVSITIFNLSTLKVFDVDN 53
             W+E L    L G  + G++   +C +          N L G +  TI N +  +V D+  
Sbjct:   186 WNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSY 245

Query:    54 NYVLGRLS-SI----VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLP 108
             N + G +   I    V  LSL  N L+   P  S +  M   + L  LD+S N L G +P
Sbjct:   246 NQLTGEIPFDIGFLQVATLSLQGNQLSGKIP--SVIGLM---QALAVLDLSGNLLSGSIP 300

Query:   109 RVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF 168
              ++GN + + E +++    ++G I  E+GN++ L  ++L  N L G I   LGKL  L  
Sbjct:   301 PILGNLTFT-EKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFD 359

Query:   169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-I 227
             L+   N+LEG IP+ L     L  L++ GNK SG+IP  F  L ++  L+L SN +   I
Sbjct:   360 LNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPI 419

Query:   228 PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF 287
             P  L  + ++  LD  +N   G +PS +G+L+ L +++ SRN++ G +P     L+S+  
Sbjct:   420 PVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIME 479

Query:   288 LSLGHNRLQGSIP 300
             + L +N + G IP
Sbjct:   480 IDLSNNDISGPIP 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	527
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-28
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-25
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	6e-25
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-23
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-19
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-16
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-15
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-15
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-14
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-14
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-13
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-13
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	8e-13
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-12
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-10
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	7e-10
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	9e-10
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	9e-10
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	4e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	4e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	9e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-08
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-08
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-08
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-08
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	4e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	5e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	6e-08
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-07
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-07
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	5e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	5e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	6e-07
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	7e-07
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	8e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	8e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-06
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	4e-06
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	4e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-06
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	5e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	7e-06
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-06
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	7e-06
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	8e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	9e-06
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	9e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-05
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	2e-05
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-05
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-05
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	3e-05
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	4e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-05
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	6e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	6e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	8e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-04
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	1e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-04
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-04
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	2e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-04
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-04
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	2e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	3e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	3e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	4e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	5e-04
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	6e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	7e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	7e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	8e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	8e-04
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	8e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	9e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	9e-04
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	0.001
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.001
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.001
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	0.001
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	0.001
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.001
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.002
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.002
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.002
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	0.002
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	0.002
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	0.002
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.002
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	0.002
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.002
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.002
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.002
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.002
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam03109	117	pfam03109, ABC1, ABC1 family	0.003
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.003
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.003
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.003
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.003
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.003
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.003
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.003
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.004
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.004
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.004
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	0.004
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.004
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (405), Expect = 1e-41
 Identities = 125/345 (36%), Positives = 169/345 (48%), Gaps = 21/345 (6%)

Query: 6   LNNRQLDGGMTGDVCYRICTID----SQNKLVG-IVSITIFNLSTLKVFDVDNNYVLGRL 60
           L+N QL G +  D+     ++     S N   G I   +I NL TL   D+ NN + G +
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL---DLSNNMLSGEI 156

Query: 61  S------SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNF 114
                  S +  L L  N L    P     +S++N   L+ L ++ N L G +PR +G  
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIP-----NSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 115 SQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN 174
            +SL++I++   N+SG I  EIG LT L  +DL  N L G I  +LG L+ LQ+L    N
Sbjct: 212 -KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 175 ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWN 233
           +L G IP  +  L  L  LDL  N LSG IP     L  L  LHL SN  T  IP  L +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 234 LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN 293
           L  +  L  WSN F G +P  +G    LT +D S NNL G+IP  +    +L  L L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
            L+G IP S     SL  + L +N+ S  +P    KL  +  L I
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (389), Expect = 1e-39
 Identities = 112/317 (35%), Positives = 162/317 (51%), Gaps = 27/317 (8%)

Query: 22  RICTIDSQNK-LVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPE 80
           R+ +ID   K + G +S  IF L  ++  +                  LS+N L+   P+
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTIN------------------LSNNQLSGPIPD 111

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
             F +S S    L+ L++S N   G +PR       +LE + +S+  +SG I  +IG+ +
Sbjct: 112 DIFTTSSS----LRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
            L  +DLGGN L G I  +L  L  L+FL+   N+L G IP  L  +  L  + L  N L
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 201 SGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           SG IP   G LT+L +L L  N LT  IPS L NLK++ YL  + N   GP+P  I +L+
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L  +D S N+L G+IP  +  L++L+ L L  N   G IP +   L  L+ L L +N  
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 320 SEIIPLSLEKLLYLNIL 336
           S  IP +L K   L +L
Sbjct: 345 SGEIPKNLGKHNNLTVL 361

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (326), Expect = 1e-31
 Identities = 133/521 (25%), Positives = 229/521 (43%), Gaps = 67/521 (12%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDE------LSLSDNYLTSSTPELSF 83
           N   G + + + +L  L+V  + +N   G +   + +      L LS N LT   PE   
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE--- 374

Query: 84  LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI 143
              + +   L KL +  N L+G +P+ +G   +SL  + + D + SG +  E   L  + 
Sbjct: 375 --GLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
            +D+  N L G I+     +  LQ LS   N+  G +P+       L  LDL  N+ SG+
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGA 490

Query: 204 IPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
           +P   G+L+ L  L L  N+L+  IP  L + K ++ LD   N   G +P+    + VL+
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL--- 319
           ++D S+N L G+IP  +  ++SL  +++ HN L GS+P++   L    S    N +L   
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Query: 320 --------SEIIPLSLEKLLYLNILLIVVVILAL-KFGLISRCQKRATKLPNVSN----- 365
                    + +  +     Y+   L   ++LAL  FG +    +   +L  V N     
Sbjct: 611 DTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTW 670

Query: 366 -MQPQASR--RRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFS- 420
            +Q   S+  +  +  ++L +       N+I RG  G+ YK + +++GM+F +K  +   
Sbjct: 671 ELQFFDSKVSKSITINDILSSL---KEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN 727

Query: 421 ------------------------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRL 456
                                   C +E    L+ EY    +L +VL +    L   +R 
Sbjct: 728 SIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN----LSWERRR 783

Query: 457 NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL 497
            I I +  AL +LH   S  ++  +L P   ++D     HL
Sbjct: 784 KIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL 824

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (324), Expect = 3e-31
 Identities = 101/319 (31%), Positives = 157/319 (49%), Gaps = 21/319 (6%)

Query: 29  QNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELS------LSDNYLTSSTPELS 82
           QNKL G +  +IF+L  L   D+ +N + G +  +V +L       L  N  T   P   
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-- 326

Query: 83  FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI---GNL 139
              ++++   L+ L +  N   G +P+ +G    +L  + +S  N++G I E +   GNL
Sbjct: 327 ---ALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
             LI   L  N L G I  +LG  + L+ +  + N   G +P+    L +++ LD+  N 
Sbjct: 383 FKLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           L G I +   ++ +L+ L L  N+        +  K +  LD   N F G +P K+G+L 
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L ++  S N L G+IP  +   K L  L L HN+L G IP SF ++  L  LDLS N L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 320 SEIIPLSL---EKLLYLNI 335
           S  IP +L   E L+ +NI
Sbjct: 560 SGEIPKNLGNVESLVQVNI 578

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (302), Expect = 1e-28
 Identities = 89/231 (38%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 110 VVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKL-QKLQF 168
           +  N S  +  I +S  NISG IS  I  L  + +I+L  N+L+G I   +      L++
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-I 227
           L+   N   GSIP     +  L  LDL  N LSG IP   G+ ++L+ L L  N L   I
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 228 PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF 287
           P+ L NL  + +L   SN  VG +P ++G +K L  I    NNL G+IP  I GL SL  
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 288 LSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP---LSLEKLLYLNI 335
           L L +N L G IP+S  +L +L+ L L  N LS  IP    SL+KL+ L++
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  104 bits (261), Expect = 1e-25
 Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 39/168 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFS------------------------------C 421
           +G G FG+VY AR  + G + AIK+                                   
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
            +E+   LV+EY   GSL+ +L  +   L   + L I++ +   LEYLH   S  IIH D
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRD 117

Query: 482 LKPHNKLLD-DNIVAHLSDFGIAKLLT-GEDQSMTQTQTLAIIGYMAP 527
           LKP N LLD DN    L+DFG++KLLT  +    T   T A   YMAP
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPA---YMAP 162

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  103 bits (259), Expect = 6e-25
 Identities = 54/168 (32%), Positives = 71/168 (42%), Gaps = 38/168 (22%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKV------------------------------FHF 419
             +G GSFG VY AR  + G   AIKV                               + 
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
              +ED   LV+EY   G L  +L      L   +    +  + SALEYLH   S  I+H
Sbjct: 65  VFEDEDKLYLVMEYCEGGDLFDLL-KKRGRLSEDEARFYLRQILSALEYLH---SKGIVH 120

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DLKP N LLD++    L+DFG+A+ L   ++  T   T     YMAP
Sbjct: 121 RDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPE---YMAP 165

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 56/168 (33%), Positives = 72/168 (42%), Gaps = 40/168 (23%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVF---------------------HFSCSN------- 423
           +G GSFG+VYKA+ +  G   A+K+                        S  N       
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66

Query: 424 ---EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
              +D   LV+EY   G L   L      L   +   I + +   LEYLH   S  IIH 
Sbjct: 67  FEDKDHLYLVMEYCEGGDLFDYLSRGG-PLSEDEAKKIALQILRGLEYLH---SNGIIHR 122

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           DLKP N LLD+N V  ++DFG+AK L     S+T   T      YMAP
Sbjct: 123 DLKPENILLDENGVVKIADFGLAKKLLKSSSSLT---TFVGTPWYMAP 167

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 53/183 (28%), Positives = 70/183 (38%), Gaps = 62/183 (33%)

Query: 391 NLIGRGSFGSVYKARLQD-GMEFAIKVFHFSCSNE------------------------- 424
            L+GRGSFGSVY A  +D G   A+K    S  +E                         
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 425 --------DFRALVLEYTTNGSLEKVLYS---------SNYILDILQRLNIMIDVTSALE 467
                   +   + LEY + GSL  +L             Y   IL+           L 
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILE----------GLA 115

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---Y 524
           YLH   S  I+H D+K  N L+D + V  L+DFG AK L       T   T ++ G   +
Sbjct: 116 YLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRL---GDIETGEGTGSVRGTPYW 169

Query: 525 MAP 527
           MAP
Sbjct: 170 MAP 172

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 84.1 bits (209), Expect = 3e-18
 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 46/175 (26%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA--------------------- 428
             IG+GSFG VY  R   DG  + +K    S  +E  R                      
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYY 65

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDIL---QRLNIMIDVTSALEYLHFGYST 475
                     +V+EY   G L + +             Q L+  + +  AL+YLH   S 
Sbjct: 66  ESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SR 122

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            I+H D+KP N  L  N +  L DFGI+K+L+     + +T    ++G   Y++P
Sbjct: 123 KILHRDIKPQNIFLTSNGLVKLGDFGISKVLS-STVDLAKT----VVGTPYYLSP 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 4/184 (2%)

Query: 158 ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRN 216
           IT     ++  +   G  + G I + +  L  +  ++L  N+LSG IP   F   ++LR 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 217 LHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI 275
           L+L +N  T SIP    ++ ++  LD  +N+  G +P+ IG+   L  +D   N L+G I
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 276 PTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
           P ++  L SL+FL+L  N+L G IP     + SL+ + L  NNLS  IP  +  L  LN 
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 336 LLIV 339
           L +V
Sbjct: 241 LDLV 244

Length = 968

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 38/170 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEF-----AIKVFHFSCSNEDFRA------------------- 428
           +G G+FG VYK  L+   E      A+K      S E+                      
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +V EY   G L   L      L +   L + + +   +EYL    S   
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLE---SKNF 123

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +H DL   N L+ +N+V  +SDFG+++ +  +D    +      I +MAP
Sbjct: 124 VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAP 173

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 39/173 (22%)

Query: 390 NNLIGRGSFGSVYKARLQD-----GMEFAIKVFHFSCSN---EDFRA------------- 428
              +G G+FG VYK +L+       +E A+K      S    E+F               
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63

Query: 429 --------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS 474
                         +V+EY   G L   L  +   L +   L+  + +   +EYL    S
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLE---S 120

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              IH DL   N L+ +N+V  +SDFG+++ L  +D    +      I +MAP
Sbjct: 121 KNFIHRDLAARNCLVGENLVVKISDFGLSRDLY-DDDYYRKRGGKLPIRWMAP 172

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 36/165 (21%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFS-----------------CSN----------- 423
           IG+G FG VYKAR  + G E AIKV                     C +           
Sbjct: 8   IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYL 67

Query: 424 -EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            +D   +V+E+ + GSL+ +L S+N  L   Q   +  ++   LEYLH   S  IIH D+
Sbjct: 68  KKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDI 124

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K  N LL  +    L DFG++  L+      T   T     +MAP
Sbjct: 125 KAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTP---YWMAP 166

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 45/179 (25%)

Query: 391 NLIGRGSFGSVYKARLQDG----MEFAIKV---FHFSCSNEDFRA--------------- 428
             +G G+FG VYK +L+       E A+K           +DF                 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 429 ------------LVLEYTTNGSLEKVL--------YSSNYILDILQRLNIMIDVTSALEY 468
                       LVLEY   G L   L              L +   L+  I +   +EY
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L    S   +H DL   N L+ +++V  +SDFG+++ +  +D    +T     I +MAP
Sbjct: 121 LA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAP 176

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 40/174 (22%)

Query: 390 NNLIGRGSFGSVYKARLQDG-----MEFAIKVFHFSCSN---EDFRA------------- 428
              +G G+FG VYK  L+       +E A+K      S    E+F               
Sbjct: 4   GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNI 63

Query: 429 --------------LVLEYTTNGSLEKVL-YSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                         +V+EY   G L   L  +    L +   L+  + +   +EYL    
Sbjct: 64  VKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE--- 120

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH DL   N L+ +N+V  +SDFG+++ L  +D           I +MAP
Sbjct: 121 SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLY-DDDYYKVKGGKLPIRWMAP 173

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 46/171 (26%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSNEDFR------------------------ 427
           +G+GS G VYK R +  G  +A+K  H    +E+FR                        
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVD-GDEEFRKQLLRELKTLRSCESPYVVKCYGA 67

Query: 428 -------ALVLEYTTNGSLEKVLYSSNYILD-ILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                  ++VLEY   GSL  +L     I + +L  +   I     L+YLH      IIH
Sbjct: 68  FYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQI--LKGLDYLH--TKRHIIH 123

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            D+KP N L++      ++DFGI+K+L   + ++ Q  T   +G   YM+P
Sbjct: 124 RDIKPSNLLINSKGEVKIADFGISKVL---ENTLDQCNTF--VGTVTYMSP 169

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 41/169 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVF--------------------------------HF 419
           +G+GSFG V   R    G  +A+KV                                 H+
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           +   E+   LVLEY   G L   L       +   R     ++  ALEYLH   S  II+
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARF-YAAEIVLALEYLH---SLGIIY 116

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            DLKP N LLD +    L+DFG+AK L+ E     +T T      Y+AP
Sbjct: 117 RDLKPENILLDADGHIKLTDFGLAKELSSEGS---RTNTFCGTPEYLAP 162

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 52/181 (28%)

Query: 386 GFSANNLIGRGSFGSVYKARLQDGME-FAIKV---------------------------- 416
            F    +IG+G+FG V   + +D  + FA+K                             
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 417 ----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLN------IMIDVTSAL 466
                 +S  +E+   LV++    G L        Y L    + +       + ++  AL
Sbjct: 61  FLVNLWYSFQDEENMYLVVDLLLGGDLR-------YHLSQKVKFSEEQVKFWICEIVLAL 113

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           EYLH   S  IIH D+KP N LLD+    H++DF IA  +T +  + + + T    GYMA
Sbjct: 114 EYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGT---PGYMA 167

Query: 527 P 527
           P
Sbjct: 168 P 168

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 45/175 (25%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL--------------VL 431
           F     +G GS+GSVYKA   + G   AIKV       ED + +              ++
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVP---VEEDLQEIIKEISILKQCDSPYIV 61

Query: 432 EYTTNGSLEKVLY------SSNYILDILQRLN----------IMIDVTSALEYLHFGYST 475
           +Y  +      L+       +  + DI++  N          I+      LEYLH   S 
Sbjct: 62  KYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SN 118

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             IH D+K  N LL++   A L+DFG++  LT    +M +  T+  IG   +MAP
Sbjct: 119 KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTD---TMAKRNTV--IGTPFWMAP 168

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 47/177 (26%), Positives = 66/177 (37%), Gaps = 47/177 (26%)

Query: 393 IGRGSFGSVYKA-RLQDGMEFAIKVFHFSCSNE--------DFRAL-------------- 429
           IG+GSFG+V K  R  DG     K   +    E        +   L              
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDR 67

Query: 430 -----------VLEYTTNGSLEKVL---YSSNYILDILQRLNIMIDVTSALEYLHFGY-- 473
                      V+EY   G L +++         ++      I+  +  AL   H     
Sbjct: 68  IIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDP 127

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
              ++H DLKP N  LD N    L DFG+AK+L G D S  +T     +G   YM+P
Sbjct: 128 GNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL-GHDSSFAKT----YVGTPYYMSP 179

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 68.4 bits (168), Expect = 8e-13
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 43/166 (25%)

Query: 392 LIGRGSFGSVYKARLQ-DGMEFAIKVF--------------------------------- 417
           +IG GSF +V  A+ +    E+AIK+                                  
Sbjct: 8   IIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKL 67

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
           +++  +E+    VLEY  NG L + +  Y S   LD         ++  ALEYLH   S 
Sbjct: 68  YYTFQDEENLYFVLEYAPNGELLQYIRKYGS---LDEKCTRFYAAEILLALEYLH---SK 121

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
            IIH DLKP N LLD ++   ++DFG AK+L   + S    +  A 
Sbjct: 122 GIIHRDLKPENILLDKDMHIKITDFGTAKVL-DPNSSPESNKGDAT 166

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 55/178 (30%), Positives = 69/178 (38%), Gaps = 52/178 (29%)

Query: 391 NLIGRGSFGSVYKA--------------RLQDGMEFAIKVFHFSCSN------------- 423
           N IG G+FG VY A              R+QD     IK                     
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65

Query: 424 --EDFRALVL---EYTTNGSLEKVLYSSNYILD--ILQRLNIMIDVTSALEYLHFGYSTP 476
             E  R  V    EY + G+LE++L     ILD  +++   + +     L YLH   S  
Sbjct: 66  GVEVHREKVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQL--LEGLAYLH---SHG 119

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT-------GEDQSMTQTQTLAIIGYMAP 527
           I+H D+KP N  LD N V  L DFG A  L         E QS+  T       YMAP
Sbjct: 120 IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA-----YMAP 172

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 50/180 (27%), Positives = 71/180 (39%), Gaps = 48/180 (26%)

Query: 386 GFSANNLIGRGSFGSVYKA-RLQDGMEFAIKVF--------------------------H 418
            F     +G+GS+GSVYK  RL D   +A+K                            +
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 419 FSCSNEDF-----RALVLEYTTNGSLEKVLYSSNYILDILQR---LNIMIDVTSALEYLH 470
                E F       +V+EY   G L K +        ++       I I +   L+ LH
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
                 I+H DLK  N LL  N +  + D GI+K+L    ++M +TQ    IG   YMAP
Sbjct: 121 ---EQKILHRDLKSANILLVANDLVKIGDLGISKVLK---KNMAKTQ----IGTPHYMAP 170

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 62/181 (34%)

Query: 391 NLIGRGSFGSVYKARLQDGMEF-AIKVF---------HFSCSNE---------------- 424
           +LIGRG+FG VYK    +  +F AIK             S   E                
Sbjct: 6   DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI 65

Query: 425 ------DFRALVLEYTTNGSLEKVL---------YSSNYILDILQRLNIMIDVTSALEYL 469
                 D   ++LEY  NGSL +++           + Y+  +LQ           L YL
Sbjct: 66  GSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQ----------GLAYL 115

Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMA 526
           H      +IH D+K  N L   + V  L+DFG+A  L    +        +++G   +MA
Sbjct: 116 H---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK-----DDASVVGTPYWMA 167

Query: 527 P 527
           P
Sbjct: 168 P 168

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 8e-12
 Identities = 31/79 (39%), Positives = 48/79 (60%)

Query: 249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS 308
           G +P+ I  L+ L  I+ S N++ G+IP ++  + SL+ L L +N   GSIP S   L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 309 LESLDLSNNNLSEIIPLSL 327
           L  L+L+ N+LS  +P +L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 96  LDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS 155
           L +    L GF+P  +    + L+ I +S  +I G I   +G++T L  +DL  N  NGS
Sbjct: 423 LGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 156 ISITLGKLQKLQFLSFRGNELEGSIPNVL 184
           I  +LG+L  L+ L+  GN L G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 40/167 (23%)

Query: 393 IGRGSFGSVYKA-RLQDGMEFAIKVFHFSCSNEDFRA----------------------- 428
           IG G+ G VYKA     G E AIK       N++                          
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV 86

Query: 429 -----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLK 483
                +V+EY   GSL  ++  +   ++  Q   +  +V   LEYLH   S  +IH D+K
Sbjct: 87  GDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIK 143

Query: 484 PHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             N LL  +    L+DFG A  LT +++S   +    ++G   +MAP
Sbjct: 144 SDNILLSKDGSVKLADFGFAAQLT-KEKSKRNS----VVGTPYWMAP 185

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 65.1 bits (157), Expect = 3e-11
 Identities = 59/176 (33%), Positives = 72/176 (40%), Gaps = 45/176 (25%)

Query: 392 LIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------- 420
            +G GSFG VY AR  D    A+KV                                   
Sbjct: 7   KLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 421 --CSNEDFRALVLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
               +E    LV+EY   GSLE +L        L   + L I+  + SALEYLH   S  
Sbjct: 65  DFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKG 121

Query: 477 IIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAII----GYMAP 527
           IIH D+KP N LLD D  V  L DFG+AKLL     + +     +      GYMAP
Sbjct: 122 IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP 177

Length = 384

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 130 GGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV 189
           G I  +I  L  L SI+L GN + G+I  +LG +  L+ L    N   GSIP  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 190 LFQLDLRGNKLSGSIPTCFG 209
           L  L+L GN LSG +P   G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 30/68 (44%), Positives = 41/68 (60%)

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
           L G IP  I  L+ LQ ++L  N ++G+IP S   + SLE LDLS N+ +  IP SL +L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 331 LYLNILLI 338
             L IL +
Sbjct: 490 TSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI 204
           + L    L G I   + KL+ LQ ++  GN + G+IP  L  +  L  LDL  N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 205 PTCFGNLTALRNLHLDSNELTS-IPSIL 231
           P   G LT+LR L+L+ N L+  +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 52/183 (28%), Positives = 68/183 (37%), Gaps = 66/183 (36%)

Query: 392 LIGRGSFGSVYKA-RLQDGMEFAIKVFHFSCSNEDFRALV-------------------- 430
           L+G GSFGSVY+   L DG  FA+K    +   +  +  V                    
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 431 --------------LEYTTNGSLEKVL--YSS-------NYILDILQRLNIMIDVTSALE 467
                         LE    GSL K+L  Y S        Y   IL            LE
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQIL----------LGLE 116

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---Y 524
           YLH       +H D+K  N L+D N V  L+DFG+AK      Q +  +   +  G   +
Sbjct: 117 YLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAK------QVVEFSFAKSFKGSPYW 167

Query: 525 MAP 527
           MAP
Sbjct: 168 MAP 170

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 43/174 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------FHF 419
           I +G++G V+ A+    G  +AIKV                                 ++
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           S   +    LV+EY   G L  +L +   + + + R   + ++  ALEYLH   S  IIH
Sbjct: 61  SFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVAR-IYIAEIVLALEYLH---SNGIIH 116

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKL-LTGE--DQSMTQTQTLAIIG---YMAP 527
            DLKP N L+D N    L+DFG++K+ L     + +  + +   I+G   Y+AP
Sbjct: 117 RDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAP 170

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 41/147 (27%)

Query: 392 LIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRAL---------------------- 429
            IG+G+FG VYK  L+   E A+K    +C +     L                      
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVK----TCRSTLPPDLKRKFLQEAEILKQYDHPNIVKL 57

Query: 430 ------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                       V+E    GSL   L      L + + L + +D  + +EYL    S   
Sbjct: 58  IGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---SKNC 114

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           IH DL   N L+ +N V  +SDFG+++
Sbjct: 115 IHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 51/169 (30%), Positives = 66/169 (39%), Gaps = 40/169 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVF---------------------------------H 418
           IG+GSFG V  A+   DG  +A+KV                                  H
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH 62

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
           +S    D    VL+Y   G L   L       +   R     ++ SAL YLH   S  II
Sbjct: 63  YSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARF-YAAEIASALGYLH---SLNII 118

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           + DLKP N LLD      L+DFG+ K   G + S T +       Y+AP
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGLCK--EGIEHSKTTSTFCGTPEYLAP 165

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 41/168 (24%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSNEDFRALV--------------------- 430
           +G G+ G V K   +  G   A+K      +    + ++                     
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF 68

Query: 431 ---------LEYTTNGSLEKVL-YSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                    +EY   GSL+K+L      I   IL +  I + V   L YLH  +   IIH
Sbjct: 69  YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGK--IAVAVLKGLTYLHEKHK--IIH 124

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            D+KP N L++      L DFG++  L     + T   T +   YMAP
Sbjct: 125 RDVKPSNILVNSRGQIKLCDFGVSGQLV-NSLAKTFVGTSS---YMAP 168

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 36/149 (24%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKVFHFSCSNED------------------------- 425
           ++G G++G V K R +  G   AIK F  S  +ED                         
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67

Query: 426 -FRA-----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
            FR      LV EY     LE +L +S   L      + +  +  A+ Y H   S  IIH
Sbjct: 68  AFRRKGRLYLVFEYVERTLLE-LLEASPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIH 123

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTG 508
            D+KP N L+ ++ V  L DFG A+ L  
Sbjct: 124 RDIKPENILVSESGVLKLCDFGFARALRA 152

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 37/160 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA----------------------- 428
           +G G++G VYKAR  + G   A+K        E   +                       
Sbjct: 7   LGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDV 66

Query: 429 --------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
                   LV EY     L+K L      L      +IM  +   L Y H   S  I+H 
Sbjct: 67  IHTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHR 122

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT-QTL 519
           DLKP N L++ + V  L+DFG+A+      ++ T    TL
Sbjct: 123 DLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTL 162

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL---------------- 429
           F+    IG+GSFG VYKA   +     AIKV     + ++   +                
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYIT 62

Query: 430 --------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                         ++EY   GS   +L      LD      I+ +V   LEYLH     
Sbjct: 63  KYYGSFLKGSKLWIIMEYCGGGSCLDLLKP--GKLDETYIAFILREVLLGLEYLH---EE 117

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY-MAP 527
             IH D+K  N LL +     L+DFG++  LT    +M++  T     + MAP
Sbjct: 118 GKIHRDIKAANILLSEEGDVKLADFGVSGQLT---STMSKRNTFVGTPFWMAP 167

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 25/59 (42%), Positives = 30/59 (50%)

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           L  +D S N L        +GL +L+ L L  N L    P +F  L SL SLDLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 52/197 (26%)

Query: 364 SNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSCS 422
           S+    A     S  EL R        N IG G+ G+VYK   +  G  +A+KV  +   
Sbjct: 60  SSASGSAPSAAKSLSELERV-------NRIGSGAGGTVYKVIHRPTGRLYALKVI-YGNH 111

Query: 423 NEDFR-------------------------------ALVLEYTTNGSLEKVLYSSNYILD 451
            +  R                                ++LE+   GSLE       +I D
Sbjct: 112 EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLE-----GTHIAD 166

Query: 452 ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
                ++   + S + YLH      I+H D+KP N L++      ++DFG++++L    Q
Sbjct: 167 EQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILA---Q 220

Query: 512 SMTQ-TQTLAIIGYMAP 527
           +M     ++  I YM+P
Sbjct: 221 TMDPCNSSVGTIAYMSP 237

Length = 353

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 39/149 (26%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIK---VFHFSCSNE--DFRA---------------- 428
             +G G++  VYKAR  + G   AIK   +     + +  +F A                
Sbjct: 6   KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNII 65

Query: 429 -------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                        LV E+     LEKV+   + +L      + M+     LEYLH  +  
Sbjct: 66  GLLDVFGHKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW-- 122

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
            I+H DLKP+N L+  + V  L+DFG+A+
Sbjct: 123 -ILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 42/172 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL--------------VLEYTTNG 437
           IG G+   VY A  L +  + AIK             L              V++Y T+ 
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF 68

Query: 438 SLEKVLY------SSNYILDILQRLN------------IMIDVTSALEYLHFGYSTPIIH 479
            +   L+      S   +LDI++               ++ +V   LEYLH   S   IH
Sbjct: 69  VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIH 125

Query: 480 CDLKPHNKLLDDNIVAHLSDFGI-AKLLTGEDQSMTQTQTLAIIG---YMAP 527
            D+K  N LL ++    ++DFG+ A L  G D++    +T   +G   +MAP
Sbjct: 126 RDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKT--FVGTPCWMAP 175

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 37/167 (22%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHF-------------------SCSNED------- 425
           IG G+ G V+KA+  + G   A+K                       +C +         
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 426 FR-----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           F       LV+EY     L +VL      L   Q  + M  +   + Y+H   +  I+H 
Sbjct: 68  FPHGSGFVLVMEYMP-SDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHR 123

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           DLKP N L+  + V  ++DFG+A+L + E+     +  +A   Y AP
Sbjct: 124 DLKPANLLISADGVLKIADFGLARLFSEEE-PRLYSHQVATRWYRAP 169

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 38/146 (26%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKV---------------------------------FH 418
           I +G+FGSVY A+ +  G  FAIKV                                  +
Sbjct: 4   ISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLY 63

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
           +S  ++D+  LV+EY   G    ++ +   + +   +   + +V   +E LH      II
Sbjct: 64  YSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAK-QYIAEVVLGVEDLH---QRGII 119

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAK 504
           H D+KP N L+D      L+DFG+++
Sbjct: 120 HRDIKPENLLIDQTGHLKLTDFGLSR 145

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 46/171 (26%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKV--------------------------------FHF 419
           +G G FG V   +++     FA+K                                  + 
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           +  ++ +  +++EY   G L  +L       +   R  I   V  A EYLH   +  II+
Sbjct: 61  TFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIAC-VVLAFEYLH---NRGIIY 116

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            DLKP N LLD N    L DFG AK L    +S  +T T    G   Y+AP
Sbjct: 117 RDLKPENLLLDSNGYVKLVDFGFAKKL----KSGQKTWT--FCGTPEYVAP 161

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 43/169 (25%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL---------------------- 429
           IG G++G VYKAR +  G   AIKV       +DF  +                      
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLE-PGDDFEIIQQEISMLKECRHPNIVAYFGSY 69

Query: 430 --------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                   V+EY   GSL+ +   +   L  LQ   +  +    L YLH    T  IH D
Sbjct: 70  LRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRD 126

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +K  N LL ++    L+DFG++  LT    ++ + ++   IG   +MAP
Sbjct: 127 IKGANILLTEDGDVKLADFGVSAQLT---ATIAKRKSF--IGTPYWMAP 170

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 429 LVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
           +V EY   GSL   L S    ++ + Q+L   +DV   +EYL        +H DL   N 
Sbjct: 77  IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNV 133

Query: 488 LLDDNIVAHLSDFGIAK 504
           L+ +++VA +SDFG+AK
Sbjct: 134 LVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 9/255 (3%)

Query: 37  SITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDN--YLTSSTPELSFLSSMSNCKYLK 94
            +   +LS L   D+ +   +  L    + L+L        +     S +S +     L 
Sbjct: 60  LLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLT 119

Query: 95  KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNG 154
            LD+  N +   +P ++G    +L+ + +SD N    +   + NL +L ++DL  N L+ 
Sbjct: 120 SLDLDNNNITD-IPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLS- 176

Query: 155 SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL 214
            +   L  L  L  L   GN++   +P  +  L+ L +LDL  N +   + +   NL  L
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD 274
             L L +N+L  +P  + NL ++  LD  +N       S +G+L  L  +D S N+L   
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNA 292

Query: 275 IPTTIQGLKSLQFLS 289
           +P     L  L+ L 
Sbjct: 293 LPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 57/187 (30%)

Query: 387 FSANNL-----IGRGSFGSVYKARLQD-GMEFAIKVFHFSCSNEDFRALVLEYTTNGSLE 440
           F+A +L     IGRG+FG+V K   +  G   A+K    +   ++ + L+++      L+
Sbjct: 1   FTAEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMD------LD 54

Query: 441 KVLYSSN--YI-----------------------LDILQRL-----------NIMIDVT- 463
            V+ SS+  YI                       LD   +             I+  +  
Sbjct: 55  VVMRSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAV 114

Query: 464 ---SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
               AL YL       IIH D+KP N LLD N    L DFGI+  L     S+ +T+   
Sbjct: 115 ATVKALNYLK--EELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLV---DSIAKTRDAG 169

Query: 521 IIGYMAP 527
              YMAP
Sbjct: 170 CRPYMAP 176

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 39/157 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDF-----------RAL----------- 429
           IG G++G VYKAR  + G   A+K        E F           + L           
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEI 66

Query: 430 -----------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                      V EY  +  L  +L S        Q    M  +   L+YLH   S  I+
Sbjct: 67  VTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGIL 122

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE-DQSMT 514
           H D+K  N L++++ V  L+DFG+A+  T       T
Sbjct: 123 HRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYT 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 49/171 (28%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIK----VF-----------------HFSCSN- 423
           +     IG G++G V  A   + G + AIK    VF                 H    N 
Sbjct: 2   YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENI 61

Query: 424 ------------EDFRAL--VLEYT-TNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALE 467
                       EDF  +  V E   T+  L KV+ S   +  D +Q    +  +   L+
Sbjct: 62  IGLLDILRPPSPEDFNDVYIVTELMETD--LHKVIKSPQPLTDDHIQY--FLYQILRGLK 117

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS---MTQ 515
           YLH   S  +IH DLKP N L++ N    + DFG+A+ +  ++     +T+
Sbjct: 118 YLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTE 165

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 44/177 (24%)

Query: 387 FSANNLIGRGSFGSVYKA-RLQDGMEFAIK------------------------------ 415
           F   N IG+GSFG V+K  R  D   +A+K                              
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 416 VFHFSCSNEDFR-ALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGY 473
           + ++    +  +  +V+EY  NG L K+L       L   Q     I +   L +LH   
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH--- 118

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           S  I+H D+K  N  LD      + D G+AKLL  ++ +   T    I+G   Y++P
Sbjct: 119 SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLL-SDNTNFANT----IVGTPYYLSP 170

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 36/154 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH-------FSCSN-------------------ED 425
           IG G++G VYKAR    G   AIK             +                    + 
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 426 FR-----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           FR      LV E+  +  L K++      L      + +  +   L + H   S  I+H 
Sbjct: 67  FRHKGDLYLVFEFM-DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHR 122

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           DLKP N L++   V  L+DFG+A+      +  T
Sbjct: 123 DLKPENLLINTEGVLKLADFGLARSFGSPVRPYT 156

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 32/163 (19%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIK-VFHFSCSNEDFR------------------------ 427
           IG G FG V+     +  + AIK +   + S EDF                         
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER 71

Query: 428 ---ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
               LV E+  +G L   L +          L + +DV   + YL    S+ +IH DL  
Sbjct: 72  SPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAA 128

Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            N L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 129 RNCLVGENQVVKVSDFGMTRFVL-DDQYTSSTGTKFPVKWSSP 170

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 40/157 (25%)

Query: 391 NLIGRGSFGSVYKARL-----QDGMEFAIKVFHFSCSNE---DFR--------------- 427
             +G G FG V   R        G + A+K  + S   +   DF                
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69

Query: 428 --------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                          L++EY  +GSL   L      +++ + L     +   ++YL    
Sbjct: 70  KYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG--- 126

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           S   IH DL   N L++   +  +SDFG+AK+L  + 
Sbjct: 127 SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 51/184 (27%), Positives = 69/184 (37%), Gaps = 74/184 (40%)

Query: 393 IGRGSFGSVYKARLQDGME-FAIKVFHFS----------CSNE----------------- 424
           +G GSFG V   R +   + +A+K+   +            NE                 
Sbjct: 9   LGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYG 68

Query: 425 ---DFRAL--VLEYTTNGSL-----------EKV--LYSSNYILDILQRLNIMIDVTSAL 466
              D   L  V+EY   G L           E V   Y++               V  AL
Sbjct: 69  SFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQ--------------VVLAL 114

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG--- 523
           EYLH   S  I++ DLKP N LLD +    ++DFG AK + G      +T TL   G   
Sbjct: 115 EYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG------RTYTLC--GTPE 163

Query: 524 YMAP 527
           Y+AP
Sbjct: 164 YLAP 167

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 56/193 (29%)

Query: 380 LLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHF-SCSNEDFRA--------- 428
           L   T  F    +IG G++G VYKAR  + G   AIK+        E+ +          
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS 60

Query: 429 -------------------------LVLEYTTNGSLEKVLYSSNYILDILQRLN------ 457
                                    LV+E    GS+  ++     +    +RL       
Sbjct: 61  NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLV---KGLRKKGKRLKEEWIAY 117

Query: 458 IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
           I+ +    L YLH      +IH D+K  N LL  N    L DFG++  L   D ++ +  
Sbjct: 118 ILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL---DSTLGRRN 171

Query: 518 TLAIIG---YMAP 527
           T   IG   +MAP
Sbjct: 172 T--FIGTPYWMAP 182

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 43/187 (22%), Positives = 65/187 (34%), Gaps = 58/187 (31%)

Query: 393 IGRGSFGSVYKARL------QDGMEFAIKVFHFSCSN---EDFRA--------------- 428
           +G G+FG V+           D    A+K    + SN   +DF                 
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDIL-------------QRLNIMIDVT 463
                       +V EY  +G L K L S       L             Q L I + + 
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIA 132

Query: 464 SALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           S + YL   HF      +H DL   N L+  ++V  + DFG+++ +   D       T+ 
Sbjct: 133 SGMVYLASQHF------VHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTML 186

Query: 521 IIGYMAP 527
            I +M P
Sbjct: 187 PIRWMPP 193

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 51/170 (30%), Positives = 67/170 (39%), Gaps = 40/170 (23%)

Query: 392 LIGRGSFGSVYKA-RLQDGMEFAIKVF--------------------------------- 417
           +IG+GSFG V  A R  DG  +A+KV                                  
Sbjct: 2   VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGL 61

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           H+S    +    VL++   G L   L       +   R     ++ SAL YLH   S  I
Sbjct: 62  HYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAA-EIASALGYLH---SINI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           ++ DLKP N LLD      L+DFG+ K   G  QS T T       Y+AP
Sbjct: 118 VYRDLKPENILLDSQGHVVLTDFGLCK--EGIAQSDTTTTFCGTPEYLAP 165

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 48/173 (27%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYS--SNY 448
            IG G+ G VYK R  + G   A+K    + + E+ + ++++      L+ VL S    Y
Sbjct: 22  EIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMD------LDVVLKSHDCPY 75

Query: 449 I-----------------------LD-ILQRLN----------IMIDVTSALEYLHFGYS 474
           I                       LD +L+R+           + + +  AL YL   + 
Sbjct: 76  IVKCYGYFITDSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHG 135

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             +IH D+KP N LLD +    L DFGI+  L     S  +T++     YMAP
Sbjct: 136 --VIHRDVKPSNILLDASGNVKLCDFGISGRLV---DSKAKTRSAGCAAYMAP 183

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 29/142 (20%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFS--CSNE---------------------DFRA 428
           IG GSFG+VY AR ++     AIK   +S   SNE                     +++ 
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKG 82

Query: 429 LVL-EYTTNGSLEKVLYSSNYILDI----LQRLNIMIDVTSALEYLHFGYSTPIIHCDLK 483
             L E+T    +E  L S++ IL++    LQ + I      AL+ L + +S   IH D+K
Sbjct: 83  CYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIK 142

Query: 484 PHNKLLDDNIVAHLSDFGIAKL 505
             N LL +     L+DFG A L
Sbjct: 143 AGNILLTEPGTVKLADFGSASL 164

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 39/152 (25%)

Query: 390 NNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNE---DFRA-------------- 428
             +IG G FG V + RL+      ++ AIK      S++   DF                
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 429 -------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL-HFGYS 474
                        ++ EY  NGSL+K L  ++    + Q + ++  + S ++YL    Y 
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNY- 127

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
              +H DL   N L++ N+V  +SDFG+++ L
Sbjct: 128 ---VHRDLAARNILVNSNLVCKVSDFGLSRRL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-FGYSTPIIHCDLKPHNK 487
           +V EY  NGSL+  L   +    ++Q + ++  + S ++YL   GY    +H DL   N 
Sbjct: 82  IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGY----VHRDLAARNI 137

Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           L++ N+V  +SDFG++++L  + ++   T+   I I + AP
Sbjct: 138 LVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAP 178

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 52/181 (28%), Positives = 69/181 (38%), Gaps = 47/181 (25%)

Query: 385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKV------------------FHFSCSNED 425
           +     + +G G+ GSV K RL   GM FA+K                    + SC +  
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPY 60

Query: 426 FR--------------ALVLEYTTNGSLE----KVLYSSNYILD-ILQRLNIMIDVTSAL 466
                            + +EY   GSL+    KV      I + +L +  I   V   L
Sbjct: 61  IVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGK--IAESVLKGL 118

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
            YLH   S  IIH D+KP N LL       L DFG++  L     + T T T     YMA
Sbjct: 119 SYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL-VNSLAGTFTGTSF---YMA 171

Query: 527 P 527
           P
Sbjct: 172 P 172

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 31/140 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH-FSCSNEDFRA----------------------- 428
           +G G FG V+  + +  ++ AIK+    + S +DF                         
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ 71

Query: 429 ----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
               +V EY  NG L   L      L     L++  DV  A+EYL    S   IH DL  
Sbjct: 72  RPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAA 128

Query: 485 HNKLLDDNIVAHLSDFGIAK 504
            N L+ ++ V  +SDFG+A+
Sbjct: 129 RNCLVGEDNVVKVSDFGLAR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           L+L+Y   G L   LY   +  +   R+ I  ++  AL++LH      II+ D+K  N L
Sbjct: 82  LILDYVNGGELFTHLYQREHFTESEVRVYIA-EIVLALDHLH---QLGIIYRDIKLENIL 137

Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LD      L+DFG++K    E++    +     I YMAP
Sbjct: 138 LDSEGHVVLTDFGLSKEFLAEEEERAYS-FCGTIEYMAP 175

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 451 DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           DIL +  I + +  ALEYLH   S  +IH D+KP N L++ N    L DFGI+  L    
Sbjct: 103 DILGK--IAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLV--- 155

Query: 511 QSMTQTQTLAIIGYMAP 527
            S+ +T       YMAP
Sbjct: 156 DSVAKTIDAGCKPYMAP 172

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    +V EY +NG L   L          Q L +  DV   + YL    S   IH 
Sbjct: 68  CTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHR 124

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAK 504
           DL   N L+DD     +SDFG+++
Sbjct: 125 DLAARNCLVDDQGCVKVSDFGLSR 148

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 47/179 (26%)

Query: 392 LIGRGSFGSVY----------------------------KARLQDGMEFAIK-------- 415
           LIG GSFGSVY                            K  + D +   I         
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 416 --VFHFSCS-NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG 472
             V +   S + D   + LEY   GS+  +L +     + L R N +  +   L YLH  
Sbjct: 67  NIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVR-NFVRQILKGLNYLH-- 123

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM-TQTQTLAIIG---YMAP 527
            +  IIH D+K  N L+D+     +SDFGI+K L     S  T     ++ G   +MAP
Sbjct: 124 -NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAP 181

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 41/168 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNE--DFRA--------------------- 428
           +G G+FG VYKA+  + G+  A K+       E  DF                       
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYF 72

Query: 429 ------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                 +++E+   G+L+ ++      L   Q   +   +  AL +LH   S  +IH DL
Sbjct: 73  YENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDL 129

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG++       Q          IG   +MAP
Sbjct: 130 KAGNILLTLDGDVKLADFGVSAKNKSTLQKRD-----TFIGTPYWMAP 172

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 33/150 (22%)

Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFAIKV-----------------------------F 417
           F+    +G G FG V++   ++ +  AIK+                              
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTP 476
              CS  +   ++ E    GSL   L S    +L +   +++   V   + YL       
Sbjct: 68  FAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQN 124

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
            IH DL   N L+ +++V  ++DFG+A+L+
Sbjct: 125 SIHRDLAARNILVGEDLVCKVADFGLARLI 154

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 31/139 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA------------------------ 428
           IG G FG+V +     G + A+K      + + F                          
Sbjct: 14  IGEGEFGAVLQGEYT-GQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNG 72

Query: 429 --LVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPH 485
             +V+E  + G+L   L +    ++ ++Q L   +DV   +EYL    S  ++H DL   
Sbjct: 73  LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAAR 129

Query: 486 NKLLDDNIVAHLSDFGIAK 504
           N L+ ++ VA +SDFG+A+
Sbjct: 130 NILVSEDGVAKVSDFGLAR 148

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 51/170 (30%), Positives = 67/170 (39%), Gaps = 40/170 (23%)

Query: 392 LIGRGSFGSVYKA-RLQDGMEFAIKVF--------------------------------- 417
           +IG+GSFG V  A R  DG  +A+KV                                  
Sbjct: 2   VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGL 61

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           H+S    +    VL+Y   G L   L      L+   R     +V SA+ YLH   S  I
Sbjct: 62  HYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARF-YAAEVASAIGYLH---SLNI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           I+ DLKP N LLD      L+DFG+ K   G +   T +       Y+AP
Sbjct: 118 IYRDLKPENILLDSQGHVVLTDFGLCK--EGVEPEETTSTFCGTPEYLAP 165

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 217 LHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI 275
           L LD+  L   IP+ +  L+ +  ++   N   G +P  +G++  L  +D S N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 276 PTTIQGLKSLQFLSLGHNRLQGSIPNS 302
           P ++  L SL+ L+L  N L G +P +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 38/147 (25%)

Query: 392 LIGRGSFGSVYKARLQ-DGMEFAIKVF--------------------------------- 417
           +IG+GSFG V  AR + +   +A+KV                                  
Sbjct: 2   VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 61

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           HFS    D    VL+Y   G L   L      L+   R     ++ SAL YLH   S  I
Sbjct: 62  HFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARF-YAAEIASALGYLH---SLNI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           ++ DLKP N LLD      L+DFG+ K
Sbjct: 118 VYRDLKPENILLDSQGHIVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 43/171 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
           LIGRG++G+VY+ + +  G   A+K+ +    ++D                         
Sbjct: 8   LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKY 67

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +++EY   GS+  ++ +    +       I+ +V  AL+Y+H      +
Sbjct: 68  YGSYLKGPRLWIIMEYAEGGSVRTLMKAGP--IAEKYISVIIREVLVALKYIH---KVGV 122

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY-MAP 527
           IH D+K  N L+ +     L DFG+A LL    Q+ ++  T     Y MAP
Sbjct: 123 IHRDIKAANILVTNTGNVKLCDFGVAALLN---QNSSKRSTFVGTPYWMAP 170

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 36/154 (23%)

Query: 393 IGRGSFGSVYKARLQD-GMEFAIKVF------------------------HFSCSN--ED 425
           IG GS+G V+K R ++ G   AIK F                        H +  N  E 
Sbjct: 9   IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEV 68

Query: 426 FRA-----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           FR      LV EY  + ++   L  +   +       I+     A+ + H       IH 
Sbjct: 69  FRRKRKLHLVFEYCDH-TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHR 124

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           D+KP N L+       L DFG A++LTG     T
Sbjct: 125 DVKPENILITKQGQIKLCDFGFARILTGPGDDYT 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 71  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 127

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
            DL   N L+ +N +  ++DFG+++L+TG+
Sbjct: 128 RDLAARNCLVGENHLVKVADFGLSRLMTGD 157

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 37/154 (24%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKV--------------------------------FHF 419
           I RG+FG VY  R + +   +A+KV                                 ++
Sbjct: 12  ISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYY 71

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           S  + +   LV+EY   G ++ +L+   Y  + +    I  +V  AL+YLH      IIH
Sbjct: 72  SLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYIS-EVALALDYLH---RHGIIH 127

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
            DLKP N L+ +     L+DFG++K+    + +M
Sbjct: 128 RDLKPDNMLISNEGHIKLTDFGLSKVTLNRELNM 161

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG--EDQSMTQTQTLAIIG 523
           L+Y+H   S  +IH DLKP N L++++    + DFG+A+ L+    +     T+ +A   
Sbjct: 120 LKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRW 176

Query: 524 YMAP 527
           Y AP
Sbjct: 177 YRAP 180

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 42/168 (25%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH------FS-----------CSNEDFRA------ 428
           +G G++G VYKAR L  G   A+K+        FS           C + +  A      
Sbjct: 17  VGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYL 76

Query: 429 ------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                 + +EY   GSL+ + Y     L  LQ   +  +    L YLH   S   +H D+
Sbjct: 77  SREKLWICMEYCGGGSLQDI-YHVTGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDI 132

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL DN    L+DFG+A  +T      T  +  + IG   +MAP
Sbjct: 133 KGANILLTDNGDVKLADFGVAAKITA-----TIAKRKSFIGTPYWMAP 175

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 44/174 (25%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKVFHFSCSNEDFRALV-------------------- 430
           L+G+G+FG VY     D G E A+K   F   + + +  V                    
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68

Query: 431 --------------LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                         +EY   GS++  L +   + + + R      +   +EYLH   S  
Sbjct: 69  YYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTR-KYTRQILEGVEYLH---SNM 124

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           I+H D+K  N L D      L DFG +K L  +    + T   ++ G   +M+P
Sbjct: 125 IVHRDIKGANILRDSAGNVKLGDFGASKRL--QTICSSGTGMKSVTGTPYWMSP 176

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 429 LVLEYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
           LV+     G L+  +Y+     L++ + ++    +T  + +LH   S  I++ D+KP N 
Sbjct: 70  LVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENV 126

Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LLDD     LSD G+A  L       T TQ     GYMAP
Sbjct: 127 LLDDQGNCRLSDLGLAVELKD---GKTITQRAGTNGYMAP 163

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 45/169 (26%), Positives = 64/169 (37%), Gaps = 42/169 (24%)

Query: 392 LIGRGSFGSVYKARLQDGMEF-AIKVFHFS------------------------------ 420
            +G G+FG V+  R +    + A+KV                                  
Sbjct: 8   TVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLF 67

Query: 421 CSNEDFRAL--VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
            +  D R L  ++EY   G L   L +S    +         ++  ALEYLH   S  I+
Sbjct: 68  WTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLF-YASEIVCALEYLH---SKEIV 123

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           + DLKP N LLD      L+DFG AK L     ++  T       Y+AP
Sbjct: 124 YRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPE-----YLAP 167

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 41/172 (23%)

Query: 392 LIGRGSFGSVYKARLQDGME----FAIKVF-------------HFSCSNEDFRA------ 428
           ++G+G +G V++ R   G +    FA+KV              H         A      
Sbjct: 3   VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI 62

Query: 429 --LVLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTS---------ALEYLHFGYST 475
             L+  + T G L  +L   S   +   L+R  I ++ T+         ALE+LH     
Sbjct: 63  VDLIYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLH---QQ 119

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            II+ DLKP N LLD      L+DFG+ K    E  ++T T     I YMAP
Sbjct: 120 GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG-TVTHT-FCGTIEYMAP 169

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 52/153 (33%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKV----------------------------FHFSCSNE 424
           +G G FG V+        + A+K                              +  CS E
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEE 73

Query: 425 DFRALVLEYTTNGSLEKVLYSSNYILDILQ-------RLNIMID----VTSALEYLHFGY 473
           +   +V EY + GSL          LD L+       RL  ++D    +   + YL    
Sbjct: 74  EPIYIVTEYMSKGSL----------LDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE--- 120

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
           S   IH DL   N L+ +N+V  ++DFG+A+L+
Sbjct: 121 SRNYIHRDLAARNILVGENLVCKIADFGLARLI 153

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 36/155 (23%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKVF------------------------HFSCSN--E 424
           L+G GS+G V K + ++ G   AIK F                        H +  N  E
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIE 67

Query: 425 DFRA-----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
            FR      LV E+  +  L+ +    N  LD  +    +  +   +E+ H   S  IIH
Sbjct: 68  VFRRKKRLYLVFEFVDHTVLDDLEKYPNG-LDESRVRKYLFQILRGIEFCH---SHNIIH 123

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
            D+KP N L+  + V  L DFG A+ L    +  T
Sbjct: 124 RDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYT 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 63  IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIW 122
            +D L L +  L    P     + +S  ++L+ +++S N + G +P  +G+ + SLE + 
Sbjct: 419 FIDGLGLDNQGLRGFIP-----NDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLD 472

Query: 123 MSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLG 161
           +S  + +G I E +G LT L  ++L GN L+G +   LG
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 38/170 (22%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNE--------DFRALV----------L 431
           N IG G++G VY+AR    G   A+K        +        +   L+           
Sbjct: 13  NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELK 72

Query: 432 EYTTNGSLEKVLYSSNYILDILQRL--------------NIMIDVTSALEYLHFGYSTPI 477
           E      L+ +     Y    L  L               +M+ +   L+YLH  +   I
Sbjct: 73  EVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF---I 129

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           IH DLK  N LL D     ++DFG+A+      + M  T  +  + Y AP
Sbjct: 130 IHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPM--TPKVVTLWYRAP 177

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 431 LEYTTNGSL-EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL 489
           +EY   G+L +K++     + +    L  +  + SA+ Y+H      I+H D+K  N  L
Sbjct: 78  MEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFL 134

Query: 490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
               +  L DFGI+K+L G + SM +T    ++G   YM+P
Sbjct: 135 TKAGLIKLGDFGISKIL-GSEYSMAET----VVGTPYYMSP 170

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 429 LVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
           +V+EY   G+L + +    N +LD    L+  + +  AL ++H   +  I+H DLK  N 
Sbjct: 76  IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNI 132

Query: 488 LLDDN-IVAHLSDFGIAKLLTGEDQSMT 514
           LLD + +V  + DFGI+K+L+ + ++ T
Sbjct: 133 LLDKHKMVVKIGDFGISKILSSKSKAYT 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 38/164 (23%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA------------------------ 428
           IG+G FG V     + G + A+K      + + F A                        
Sbjct: 14  IGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK 72

Query: 429 ----LVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLK 483
               +V EY   GSL   L S    +L     L   +DV  A+EYL    +   +H DL 
Sbjct: 73  GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLA 129

Query: 484 PHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             N L+ ++ VA +SDFG+ K     + S TQ      + + AP
Sbjct: 130 ARNVLVSEDNVAKVSDFGLTK-----EASSTQDTGKLPVKWTAP 168

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 29/169 (17%)

Query: 387 FSANNLIGRGSFGSVYKARLQDGMEF-AIKVFHFSCSNEDFRALVLE------------- 432
           F    ++G G++G V K R ++  E  AIK F  S  NE+ +   L              
Sbjct: 3   FEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENI 62

Query: 433 ------YTTNGSLEKVL-YSSNYILDILQRL-------NIMIDVTSALEYLHFGYSTPII 478
                 +   G L  V  Y    +L++L+ +        +   +   ++ +H+ +   I+
Sbjct: 63  VELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIV 122

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H D+KP N L+  N V  L DFG A+ L+ E  +   T+ +A   Y +P
Sbjct: 123 HRDIKPENLLISHNDVLKLCDFGFARNLS-EGSNANYTEYVATRWYRSP 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 43/156 (27%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           D F    +IGRG+FG V+  R    G  +A+KV                           
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADS 60

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH- 470
                 ++S  +E+   LV+EY   G L  +L   +   +   R  I  ++  AL+ +H 
Sbjct: 61  PWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIA-ELVLALDSVHK 119

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAK 504
            G+    IH D+KP N L+D     H  L+DFG+ K
Sbjct: 120 LGF----IHRDIKPDNILID--ADGHIKLADFGLCK 149

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 369 QASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS--CSNEDF 426
           + +R+RF+ +++ +        NLI R     V+  R  D + FA   F  S  CS E  
Sbjct: 23  KETRQRFAMKKINK-------QNLILRNQIQQVFVER--DILTFAENPFVVSMFCSFETK 73

Query: 427 RAL--VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
           R L  V+EY   G    +L +   +   + R+     V  ALEYLH   +  I+H DLKP
Sbjct: 74  RHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVL-ALEYLH---NYGIVHRDLKP 129

Query: 485 HNKLLDDNIVAHLSDFGIAKL 505
            N L+       L+DFG++K+
Sbjct: 130 DNLLITSMGHIKLTDFGLSKI 150

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 55/185 (29%)

Query: 391 NLIGRGSFGSVYKARLQ-DG--MEFAIKVFH----------------------------- 418
           ++IG G+FG V +A ++ DG  M  AIK+                               
Sbjct: 8   DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIIN 67

Query: 419 --FSCSNEDFRALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMID 461
              +C N  +  + +EY   G+L   L  S  +               L   Q L    D
Sbjct: 68  LLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASD 127

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           V + ++YL        IH DL   N L+ +N+ + ++DFG+++   GE+  + +T     
Sbjct: 128 VATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLSR---GEEVYVKKTMGRLP 181

Query: 522 IGYMA 526
           + +MA
Sbjct: 182 VRWMA 186

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
            H++   E    L+L+Y + G +   LY  +   +   R     ++  ALE+LH      
Sbjct: 70  LHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSG-EIILALEHLH---KLG 125

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           I++ D+K  N LLD      L+DFG++K    E++  T +     I YMAP
Sbjct: 126 IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYS-FCGTIEYMAP 175

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 42/168 (25%)

Query: 393 IGRGSFGSVYKAR--------------LQDGMEFAIK----VFHFSCSNEDFRA------ 428
           IG G++G VYKAR              L+ G +FA+     +    C + +  A      
Sbjct: 17  IGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYL 76

Query: 429 ------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                 + +E+   GSL+ + +    +   L    I       L+ L++ +S   +H D+
Sbjct: 77  RRDKLWICMEFCGGGSLQDIYH----VTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDI 132

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL DN    L+DFG++  +T      T  +  + IG   +MAP
Sbjct: 133 KGANILLTDNGHVKLADFGVSAQITA-----TIAKRKSFIGTPYWMAP 175

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 53/172 (30%)

Query: 387 FSANNLIGRGSFGSVYKARL-QDGMEF------AIKVFHFSCSN-EDFRA---------- 428
                ++G G FGSV + +L QD           +K+   + S  E+F +          
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60

Query: 429 -----------------------LVLEYTTNGSLEKVLYSS-------NYILDILQRLNI 458
                                  ++L +  +G L   L  S          L  L  L  
Sbjct: 61  PNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTL--LKF 118

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           M+D+   +EYL    +   IH DL   N +L +++   ++DFG++K +   D
Sbjct: 119 MVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGD 167

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 43/168 (25%)

Query: 393 IGRGSFGSVYKA-RLQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AIK  +           NE                    
Sbjct: 27  IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYL 86

Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+
Sbjct: 87  VGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 141

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPE-----QSKRSTMVGTPYWMAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 50/179 (27%)

Query: 392 LIGRGSFGSVYKA-------------------------RLQDGMEFAIK----------- 415
           LIG+G++G VY A                           Q  M  A++           
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 416 ---VFHFSCSN-EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
              V +      E++ ++ LEY   GS+   L +     + L R      V   L YLH 
Sbjct: 68  LNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVR-FFTEQVLEGLAYLH- 125

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL---LTGEDQSMTQTQTLAIIGYMAP 527
             S  I+H DLK  N L+D + +  +SDFGI+K    +   DQ+M+   +   + +MAP
Sbjct: 126 --SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS---VFWMAP 179

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 58/183 (31%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIK---------------------------------- 415
             IG G++G+VYKAR L  G   A+K                                  
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIV 64

Query: 416 ----VFHFSCSNEDFR-ALVLEYTT---NGSLEKVL---YSSNYILDILQRLNIMIDVTS 464
               V H   ++ + +  LV E+        L K          I D++++L        
Sbjct: 65  RLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQL------LR 118

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
            +++LH   S  I+H DLKP N L+  +    ++DFG+A++ + E   M  T  +  + Y
Sbjct: 119 GVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE---MALTSVVVTLWY 172

Query: 525 MAP 527
            AP
Sbjct: 173 RAP 175

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 58/187 (31%)

Query: 393 IGRGSFGSVYKARL------QDGMEFAIKV-----------------------------F 417
           +G G+FG V+ A        QD M  A+K                              F
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSN---YILD-----------ILQRLNIMIDVT 463
           +  C+      +V EY  +G L + L S      IL            + Q L I   + 
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIA 132

Query: 464 SALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           S + YL   HF      +H DL   N L+   +V  + DFG+++ +   D      +T+ 
Sbjct: 133 SGMVYLASLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 186

Query: 521 IIGYMAP 527
            I +M P
Sbjct: 187 PIRWMPP 193

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 34/164 (20%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 73

Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY + GSL   L       L + Q +++   + S + Y+        +H DL+ 
Sbjct: 74  PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRA 130

Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 131 ANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSA 465
           C+ E    ++ EY  +G L + L  ++                 LD    L+I I + + 
Sbjct: 77  CTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAG 136

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
           +EYL    S   +H DL   N L+ + +   +SDFG+++ +   D    Q+++L  + +M
Sbjct: 137 MEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWM 193

Query: 526 AP 527
            P
Sbjct: 194 PP 195

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 59/169 (34%)

Query: 391 NLIGRGSFGSVYKARLQD-GMEFAIK---------------------------------- 415
           + +G G++G V  A     G + AIK                                  
Sbjct: 21  SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLL 80

Query: 416 -VFHFSCSNEDFRA--LVLEYTTNGSLEKVLYSSNYILDILQRLN------IMIDVTSAL 466
            VF  + S EDF+   LV        L  ++          Q+L+      ++  +   L
Sbjct: 81  DVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC--------QKLSDDHIQFLVYQILRGL 131

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           +Y+H   S  IIH DLKP N  ++++    + DFG+A+     D  MT 
Sbjct: 132 KYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHT---DDEMTG 174

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 39/166 (23%)

Query: 392 LIGRGSFGSVYKARL-QDGME---FAIKVFHFSCSNE---DFRA---------------- 428
           +IG G FG V + RL   G      AIK      + +   DF +                
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      ++ E+  NG+L+  L  ++    ++Q + ++  + + ++YL        
Sbjct: 71  EGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNY 127

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           +H DL   N L++ N+V  +SDFG+++ L  ED +   T T ++ G
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTYTSSLGG 171

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 55/185 (29%)

Query: 391 NLIGRGSFGSVYKARL-QDG--MEFAIK-----------------------------VFH 418
           ++IG G+FG V KAR+ +DG  M+ AIK                             + +
Sbjct: 13  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 72

Query: 419 F--SCSNEDFRALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMID 461
              +C +  +  L +EY  +G+L   L  S  +               L   Q L+   D
Sbjct: 73  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 132

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           V   ++YL        IH DL   N L+ +N VA ++DFG+++   G++  + +T     
Sbjct: 133 VARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRLP 186

Query: 522 IGYMA 526
           + +MA
Sbjct: 187 VRWMA 191

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 12/106 (11%)

Query: 430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL 489
           V EY    +L +VL +++  L   +   +M+ V  AL   H   +  I+H DLKP N ++
Sbjct: 57  VFEYVPGRTLREVL-AADGALPAGETGRLMLQVLDALACAH---NQGIVHRDLKPQNIMV 112

Query: 490 ---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA--IIG---YMAP 527
                   A + DFGI  LL G   +   T T    ++G   Y AP
Sbjct: 113 SQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAP 158

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 54/186 (29%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           S+N+  G V   + +LS L                   +L LS+N L+   P+      +
Sbjct: 483 SRNQFSGAVPRKLGSLSELM------------------QLKLSENKLSGEIPD-----EL 519

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
           S+CK L  LD+S N L G +P    +FS   E   +S                    +DL
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIP---ASFS---EMPVLSQ-------------------LDL 554

Query: 148 GGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTC 207
             N+L+G I   LG ++ L  ++   N L GS+P+    LA+        + ++G+I  C
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI------NASAVAGNIDLC 608

Query: 208 FGNLTA 213
            G+ T+
Sbjct: 609 GGDTTS 614

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 284 SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
           +L+ L L +NRL      +F  L +L+ LDLS NNL+ I P +   L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL 47

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 23/82 (28%)

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
           L++L L +N LT IP                             L  L  +D S NNL  
Sbjct: 2   LKSLDLSNNRLTVIP-----------------------DGAFKGLPNLKVLDLSGNNLTS 38

Query: 274 DIPTTIQGLKSLQFLSLGHNRL 295
             P    GL SL+ L L  N L
Sbjct: 39  ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 208 FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV-LTRIDF 266
             NL  L +L L+ N L S  S L  L ++  LD  +N  +  +P  IG LK  L  +D 
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDL 147

Query: 267 SRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS 326
           S N +   +P+ ++ L +L+ L L  N L   +P    +L +L +LDLS N +S+ +P  
Sbjct: 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPE 204

Query: 327 LEKLLYLNILLI 338
           +E L  L  L +
Sbjct: 205 IELLSALEELDL 216

Length = 394

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 51/152 (33%)

Query: 393 IGRGSFGSVYKARLQDGMEF-AIKVF-----HFS-CSN--------------------ED 425
           +G G+FGSVY AR ++  E  AIK        +  C N                    E 
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEV 66

Query: 426 FRA-----LVLEYTTNGSLEKVLYSSNYILDILQRL-------NIMIDVTSALEYLH-FG 472
           FR       V EY     +E  LY    + D   +        +I+  +   L ++H  G
Sbjct: 67  FRENDELYFVFEY-----MEGNLY--QLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG 119

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           +     H DLKP N L+    V  ++DFG+A+
Sbjct: 120 F----FHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ EY  NG+L+K L   +      Q + ++  + + ++YL        +H DL   N L
Sbjct: 83  IITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNIL 139

Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           ++ N+   +SDFG++++L  + +    T    I I + AP
Sbjct: 140 VNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAP 179

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 449 ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT- 507
           IL+ + +  IM  +  AL+Y+H   S  +IH DLKP N LL+ +    L+DFG+A+ L+ 
Sbjct: 103 ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSE 159

Query: 508 --GEDQSMTQTQTLAIIGYMAP 527
                ++   T  +A   Y AP
Sbjct: 160 LEENPENPVLTDYVATRWYRAP 181

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 15/74 (20%)

Query: 439 LEKVLYSSNYILDILQRL---------NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL 489
           LEK++ ++    +I +R+         NIM D+ + LEY+H      I H D+KP N ++
Sbjct: 106 LEKLVENTK---EIFKRIKCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMV 159

Query: 490 DDNIVAHLSDFGIA 503
           D N   ++ D+GIA
Sbjct: 160 DGNNRGYIIDYGIA 173

Length = 294

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 49/164 (29%)

Query: 387 FSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFH---FSCSN-EDF------------ 426
           F+   ++G+G FGSV +A+L+       + A+K+     FS S+ E+F            
Sbjct: 1   FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDH 60

Query: 427 -------------RA--------LVLEYTTNGSLEKVLYSSN-----YILDILQRLNIMI 460
                        RA        ++L +  +G L   L  S      + L +   +  MI
Sbjct: 61  PNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI 120

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           D+ S +EYL    S   IH DL   N +L++N+   ++DFG++K
Sbjct: 121 DIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 45/179 (25%)

Query: 387 FSANN---LIGRGSFGSVYKAR-LQDGMEFAIK-----------------VFHF------ 419
           +  N    ++G+G++G VY AR L   +  AIK                   H       
Sbjct: 7   YDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRN 66

Query: 420 ------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMI----DVTSALEYL 469
                 S S   F  + +E    GSL  +L S    L        +I     +   L+YL
Sbjct: 67  IVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLK--DNEQTIIFYTKQILEGLKYL 124

Query: 470 HFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H      I+H D+K  N L++  + V  +SDFG +K L G +   T+T T   + YMAP
Sbjct: 125 H---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGIN-PCTETFT-GTLQYMAP 178

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 20/181 (11%)

Query: 66  ELSLSDNYLTSSTPEL-SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQS--LEFIW 122
           EL LS N        L S L  ++    L++LD+S N L      V+ +  +S  L+ + 
Sbjct: 55  ELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK 114

Query: 123 MSDCNISGGISEEIG-----NLTDLISIDLGGNKLNGSISITLGKL----QKLQFLSFRG 173
           +++  +       +          L  + LG N+L G+    L K     + L+ L+   
Sbjct: 115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174

Query: 174 NELEGSIPNVLC----HLAVLFQLDLRGNKL----SGSIPTCFGNLTALRNLHLDSNELT 225
           N +  +    L         L  LDL  N L    + ++     +L +L  L+L  N LT
Sbjct: 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

Query: 226 S 226
            
Sbjct: 235 D 235

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 33/143 (23%)

Query: 392 LIGRGSFGSVYKARLQDGMEFAIKV----------FHF--------------------SC 421
           L+G+G+FG V+K  L+D    A+K             F                     C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
           +      +V+E    G     L      L   Q +   +D  + + YL    S   IH D
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRD 118

Query: 482 LKPHNKLLDDNIVAHLSDFGIAK 504
           L   N L+ +N V  +SDFG+++
Sbjct: 119 LAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 44/179 (24%)

Query: 359 KLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSV-----------YKARL- 406
           K  N+ N   +  +      +L    + F    +IGRG+FG V           Y  +L 
Sbjct: 17  KNKNIDNFLSRYEKAAEKITKLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLL 76

Query: 407 -----------------QDGMEFA----IKVFHFSCSNEDFRALVLEYTTNGSLEKVLYS 445
                            +D M  A    I   H++  ++ +  +V+EY   G L  V   
Sbjct: 77  SKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDL--VNLM 134

Query: 446 SNYILDILQRLNIM--IDVTSALEYLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG 501
           SNY  DI ++       +V  AL+ +H  G+    IH D+KP N LLD +    L+DFG
Sbjct: 135 SNY--DIPEKWARFYTAEVVLALDAIHSMGF----IHRDVKPDNMLLDKSGHLKLADFG 187

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           L++EY   GSL   L      L++ Q L     +   + YLH   S   IH DL   N L
Sbjct: 85  LIMEYVPLGSLRDYLPKHK--LNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVL 139

Query: 489 LDDNIVAHLSDFGIAK 504
           LD++ +  + DFG+AK
Sbjct: 140 LDNDRLVKIGDFGLAK 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 42/174 (24%)

Query: 387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVF------------HFS------------- 420
           F     +G GSFG V  A+ +  G  +AIK              H +             
Sbjct: 20  FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPF 79

Query: 421 -----CSNEDFRAL--VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                CS +D   +  +LE+   G L   L  +    + + +     ++  A EYLH   
Sbjct: 80  IVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKF-YHAELVLAFEYLH--- 135

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S  II+ DLKP N LLD+     ++DFG AK +   D++ T   T     Y+AP
Sbjct: 136 SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP--DRTFTLCGTPE---YLAP 184

Length = 329

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 18/126 (14%)

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYS---------------SNYILDILQRLNIMID 461
           F+  C + D   +V EY  +G L K L +               +   L + Q L+I   
Sbjct: 72  FYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQ 131

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           + S + YL    S   +H DL   N L+  N++  + DFG+++ +   D       T+  
Sbjct: 132 IASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLP 188

Query: 522 IGYMAP 527
           I +M P
Sbjct: 189 IRWMPP 194

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALV---------LEYTTNGSLEKV 442
           IG G++G VYK R  + G   A+K        E   +           L++     L+ V
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67

Query: 443 LYSSNYILDILQRLNI-------------MIDVTSALEYLH-------FGYSTPIIHCDL 482
           L   + +  I + L++              +D      YL+       F +S  ++H DL
Sbjct: 68  LMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDL 127

Query: 483 KPHNKLLDDNIVAHLSDFGIAK 504
           KP N L+D+  V  L+DFG+A+
Sbjct: 128 KPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 45/163 (27%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKV--------------------------------FH 418
           L+G+G  G V+  RL+  G  FA+KV                                 +
Sbjct: 8   LLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLY 67

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTSALEYLH-FGYST 475
            S   E +  LV++Y   G L ++L       + + + R     +V  ALEYLH  G   
Sbjct: 68  ASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAA-EVLLALEYLHLLG--- 123

Query: 476 PIIHCDLKPHNKLL--DDNIVAHLSDFGIAKLLTGEDQSMTQT 516
            I++ DLKP N LL    +I+  LSDF ++K    E   +++ 
Sbjct: 124 -IVYRDLKPENILLHESGHIM--LSDFDLSKQSDVEPPPVSKA 163

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
           L+YLH   S  I+H D+KP N L++ N V  + DFG+A+ +   D+S   TQ +    Y 
Sbjct: 116 LKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLAR-VEEPDESKHMTQEVVTQYYR 171

Query: 526 AP 527
           AP
Sbjct: 172 AP 173

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA-KLLTGEDQSMTQTQTL 519
           ++T  LE LH      I++ DLKP N LLDD     +SD G+A ++  GE    T    +
Sbjct: 110 EITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE----TIRGRV 162

Query: 520 AIIGYMAP 527
             +GYMAP
Sbjct: 163 GTVGYMAP 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA-KLLTGEDQSMTQTQTLA 520
           + S LE+LH      II+ DLKP N LLD++    +SD G+A +L  G+ ++     T  
Sbjct: 106 IISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGT-- 160

Query: 521 IIGYMAP 527
             G+MAP
Sbjct: 161 -PGFMAP 166

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 48/177 (27%)

Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKVFHFSCSNEDFRAL-------------- 429
           F+    IG+GSFG V+K    R Q  +  AIK+     + ++   +              
Sbjct: 6   FTKLERIGKGSFGEVFKGIDNRTQQVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 63

Query: 430 ----------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                           ++EY   GS   +L +  +  D  Q   ++ ++   L+YLH   
Sbjct: 64  VTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPF--DEFQIATMLKEILKGLDYLH--- 118

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           S   IH D+K  N LL +     L+DFG+A  LT      TQ +    +G   +MAP
Sbjct: 119 SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD-----TQIKRNTFVGTPFWMAP 170

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 42/174 (24%)

Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKVFHFSCSNEDFRAL-------------- 429
           F+    IG+GSFG V+K    R Q  +  AIK+     + ++   +              
Sbjct: 6   FTKLEKIGKGSFGEVFKGIDNRTQKVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 63

Query: 430 ----------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                           ++EY   GS   +L      LD  Q   I+ ++   L+YLH   
Sbjct: 64  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP--LDETQIATILREILKGLDYLH--- 118

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH D+K  N LL ++    L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 119 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 170

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 49/159 (30%)

Query: 390 NNLIGRGSFGSVYKAR-LQDGMEFAIKV---------------------FHFSCSNE--- 424
              +G G++G V KA     G   AIK                       HF+   E   
Sbjct: 14  GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKI 73

Query: 425 -------------------DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSA 465
                              DF  LV++      L+KV+      L   Q   I++ + + 
Sbjct: 74  MNEIKHENIMGLVDVYVEGDFINLVMDIM-ASDLKKVV-DRKIRLTESQVKCILLQILNG 131

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           L  LH  Y    +H DL P N  ++   +  ++DFG+A+
Sbjct: 132 LNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLAR 167

Length = 335

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
            +   LE+LH      I++ DLKP N LLDD+    +SD G+A  L G            
Sbjct: 103 QIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK---KIKGRAG 156

Query: 521 IIGYMAP 527
             GYMAP
Sbjct: 157 TPGYMAP 163

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           ++   LE LH      I++ DLKP N LLDD+    +SD G+A +   E Q++     + 
Sbjct: 110 EICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLA-VHVPEGQTI--KGRVG 163

Query: 521 IIGYMAP 527
            +GYMAP
Sbjct: 164 TVGYMAP 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 53/161 (32%)

Query: 392 LIGRGSFGSVYKARLQDGME--FAIKVFHFSC---------SNEDFRALVLEYTTNGSLE 440
            +G G+FG VYK R ++  +   A+K  +             ++    +V E T    ++
Sbjct: 7   HLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTI---IK 63

Query: 441 KVLYSSN--------------YIL-DILQ---------------------RL-NIMIDVT 463
           + L   N              YI+ D+++                     R+ NI + + 
Sbjct: 64  EQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMV 123

Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
            AL YLH      I+H DL P+N +L ++    ++DFG+AK
Sbjct: 124 LALRYLH--KEKRIVHRDLTPNNIMLGEDDKVTITDFGLAK 162

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 24/59 (40%)

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
           L S+DL  N+L          L  L+ L   GN L    P     L  L  LDL GN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 34/170 (20%)

Query: 387 FSANNLIGRGSFGSVYKARLQDGMEF-AIKVFHFSCSNEDFRALVLEYTTNGSLEK---V 442
           F+    IG+GSFG VYK       E  AIK+     + ++   +  E T     +     
Sbjct: 6   FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYIT 65

Query: 443 LYSSNYI-----------------LDILQR--------LNIMIDVTSALEYLHFGYSTPI 477
            Y  +Y+                 LD+L+           I+ ++   L+YLH   S   
Sbjct: 66  RYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLH---SERK 122

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           IH D+K  N LL +     L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 123 IHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 170

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 29/144 (20%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSC--SNEDFRALV------------------- 430
           IG GSFG+VY AR +++    AIK   +S   SNE ++ ++                   
Sbjct: 23  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82

Query: 431 ---LEYTTNGSLEKVLYSSNYILDI----LQRLNIMIDVTSALEYLHFGYSTPIIHCDLK 483
               E+T    +E  L S++ +L++    LQ + I      AL+ L + +S  +IH D+K
Sbjct: 83  CYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK 142

Query: 484 PHNKLLDDNIVAHLSDFGIAKLLT 507
             N LL +  +  L DFG A ++ 
Sbjct: 143 AGNILLSEPGLVKLGDFGSASIMA 166

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 51/159 (32%)

Query: 393 IGRGSFGSVYKARLQ---DGMEFAIKVFHFSCSNED------------FRALVLEYTTNG 437
           IGRG++G VYKA+ +   DG E+AIK F                     R L  E     
Sbjct: 8   IGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVV-- 65

Query: 438 SLEKVLYSSN----YIL------DILQRLN-----------------IMIDVTSALEYLH 470
           SL +V         Y+L      D+ Q +                  ++  + + + YLH
Sbjct: 66  SLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH 125

Query: 471 FGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKL 505
              S  ++H DLKP N L+     +  V  + D G+A+L
Sbjct: 126 ---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARL 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 47/183 (25%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFH-FSCSNEDFRA------------- 428
              F     IG+G F  VYKA  L DG   A+K    F   +   R              
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 429 ------------------LVLEYTTNGSLEKVL---YSSNYILDILQRLNIMIDVTSALE 467
                             +VLE    G L +++        ++         + + SALE
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE 120

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---Y 524
           ++H   S  I+H D+KP N  +    V  L D G+ +  + +      T   +++G   Y
Sbjct: 121 HMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK-----TTAAHSLVGTPYY 172

Query: 525 MAP 527
           M+P
Sbjct: 173 MSP 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 165 KLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNEL 224
            L+ L    N L          L  L  LDL GN L+   P  F  L +LR+L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 51/176 (28%)

Query: 392 LIGRGSFGSVYKARLQDGME----FAIKVF------------------------------ 417
           ++G+GSFG V+  R   G +    +A+KV                               
Sbjct: 3   VLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVK 62

Query: 418 -HFSCSNEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
            H++   E    L+L++   G L     ++V+++   +   L  L +      AL++LH 
Sbjct: 63  LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELAL------ALDHLH- 115

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             S  II+ DLKP N LLD+     L+DFG++K     D           + YMAP
Sbjct: 116 --SLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMAP 167

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 42/153 (27%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV--------------------------- 416
           D F    +IGRG+FG V   ++++ G  +A+K+                           
Sbjct: 1   DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDR 60

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNI--MIDVTSALEY 468
                 H++  +E+   LV++Y   G L  +L    + + + + R  +  M+    ++  
Sbjct: 61  RWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ 120

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG 501
           L +      +H D+KP N LLD N    L+DFG
Sbjct: 121 LGY------VHRDIKPDNVLLDKNGHIRLADFG 147

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 56/177 (31%)

Query: 382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFA---------------------IKVF--- 417
           R  D F     IG G++G VYKAR +D  E                       IK+    
Sbjct: 4   RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL 63

Query: 418 -HFSCSN-----------EDFRA------LVLEYTTN---GSLEK--VLYSSNYILDILQ 454
            H +  N            DF+       LV EY  +   G LE   V +S ++I   ++
Sbjct: 64  NHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMK 123

Query: 455 RLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           +L         LE L++ +    +H D+K  N LL++     L+DFG+A+L   E+ 
Sbjct: 124 QL---------LEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 39/172 (22%)

Query: 390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA--------------------- 428
              IG G FG VY+          I V   +C N    +                     
Sbjct: 11  GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIV 70

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       +V+E    G L   L  + Y LD+   +     +++AL YL    S  
Sbjct: 71  KLIGVITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE---SKR 127

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            +H D+   N L+       L DFG+++ L  ED+S  +     + I +MAP
Sbjct: 128 FVHRDIAARNVLVSSPDCVKLGDFGLSRYL--EDESYYKASKGKLPIKWMAP 177

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 52/168 (30%)

Query: 393 IGRGSFGSVYKAR-------------------------------LQDGMEFAIKVFHFSC 421
           IG GSFG +Y A+                               L   M+    V  F+ 
Sbjct: 8   IGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFAS 67

Query: 422 SNEDFRA-LVLEYTTNGSLEK-------VLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
             E+ R  +V+EY   G L K       VL+S + IL      +  + ++  L+++H   
Sbjct: 68  FQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQIL------SWFVQISLGLKHIH--- 118

Query: 474 STPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
              I+H D+K  N  L  N +VA L DFGIA+ L   + SM    T  
Sbjct: 119 DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQL---NDSMELAYTCV 163

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 43/179 (24%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQDGME-FAIKVF-------------------------- 417
           D F    +IGRG+FG V   +++     +A+K+                           
Sbjct: 1   DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDC 60

Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNI--MIDVTSALEY 468
                 H++  +E++  LV++Y   G L  +L    + + + + R  I  M+    ++  
Sbjct: 61  QWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQ 120

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LH+      +H D+KP N LLD N    L+DFG + L   +D ++  +  +    Y++P
Sbjct: 121 LHY------VHRDIKPDNVLLDMNGHIRLADFG-SCLKMNQDGTVQSSVAVGTPDYISP 172

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 48/174 (27%)

Query: 393 IGRGSFGSVYKARLQD-GMEFAIKV----------------------------------- 416
           IG+G+FG VY+ R +D    +A+KV                                   
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60

Query: 417 --FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS 474
             F F   ++ +  LV +Y + G L   L       +   +  I  ++  ALE+LH    
Sbjct: 61  LKFSFQTDSDLY--LVTDYMSGGELFWHLQKEGRFSEDRAKFYIA-ELVLALEHLH---K 114

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL-LTGEDQSMTQTQTLAIIGYMAP 527
             I++ DLKP N LLD      L DFG++K  LT    + T   T     Y+AP
Sbjct: 115 YDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTE---YLAP 165

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 51/208 (24%), Positives = 75/208 (36%), Gaps = 66/208 (31%)

Query: 368 PQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKA--RLQDG----MEFAIKVFHFSC 421
           P+  R       LLRA         +G G+FG VY+   R +DG    ++ A+K    SC
Sbjct: 1   PEVPRDSI---TLLRA---------LGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC 48

Query: 422 SNE---DF---------------------------RALVLEYTTNGSLEKVLYSSN---- 447
           S +   DF                           R ++LE    G L+  L  +     
Sbjct: 49  SEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPE 108

Query: 448 --YILDILQRLNIMIDVTSALEYL---HFGYSTPIIHCDLKPHNKLLDD---NIVAHLSD 499
               L +   L    DV    +YL   HF      IH D+   N LL       VA ++D
Sbjct: 109 RPSSLTMKDLLFCARDVAKGCKYLEENHF------IHRDIAARNCLLTCKGPGRVAKIAD 162

Query: 500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           FG+A+ +          + +  I +M P
Sbjct: 163 FGMARDIYRASYYRKGGRAMLPIKWMPP 190

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           L+Y+H   S  ++H DLKP N LL+ N    + DFG+A+  + +   MT+
Sbjct: 121 LKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTE 167

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMI-DVTSALEYLHFGYST 475
            H++   +    L+L+Y   G L   L       +  Q + I   ++  ALE+LH     
Sbjct: 70  LHYAFQTDTKLHLILDYINGGELFTHLSQRERFKE--QEVQIYSGEIVLALEHLH---KL 124

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            II+ D+K  N LLD N    L+DFG++K    ED+          I YMAP
Sbjct: 125 GIIYRDIKLENILLDSNGHVVLTDFGLSKEFH-EDEVERAYSFCGTIEYMAP 175

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC--SNEDFRALV------------- 430
           F+    IG GSFG+VY AR ++     AIK   +S   SNE ++ ++             
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 431 ---------LEYTTNGSLEKVLYSSNYILDI----LQRLNIMIDVTSALEYLHFGYSTPI 477
                     E+T    +E  L S++ +L++    LQ + I      AL+ L + +S  +
Sbjct: 87  SIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNM 146

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
           IH D+K  N LL +     L+DFG A + +
Sbjct: 147 IHRDIKAGNILLTEPGQVKLADFGSASIAS 176

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+K  N L
Sbjct: 94  VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNIL 148

Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L  +    L+DFG    +T E     ++  +    +MAP
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAP 185

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 35/144 (24%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI-- 449
           IG G++G VYKAR    G   A+K        E   +  +      SL K L   N +  
Sbjct: 8   IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI---SLLKELNHPNIVKL 64

Query: 450 LDIL--------------QRLNIMIDVTSALE--------YLH-------FGYSTPIIHC 480
           LD++              Q L   +D +            YL        F +S  ++H 
Sbjct: 65  LDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHR 124

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAK 504
           DLKP N L++      L+DFG+A+
Sbjct: 125 DLKPQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 34/164 (20%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+        + AIK                              ++  +E+
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEE 73

Query: 426 FRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V E+   GSL   L   +   L + Q +++   +   + Y+        IH DL+ 
Sbjct: 74  PIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRA 130

Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ DN+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 131 ANILVGDNLVCKIADFGLARLI--EDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 421 CSNEDFRALVLEYTTNGSLEKVL-----YS----SNYI--LDILQRLNIMIDVTSALEYL 469
           C ++D   ++ EY  NG L + L      S    +N I  + I   L + + + S ++YL
Sbjct: 86  CVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYL 145

Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
               S   +H DL   N L+ ++    ++DFG+++ L   D    Q + +  I +MA
Sbjct: 146 A---SLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMA 199

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 456 LNIMIDVTSALEYL--HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
           L+I I + + +EYL  HF      +H DL   N L+ + +   +SD G+++ +   D   
Sbjct: 127 LHIAIQIAAGMEYLSSHF-----FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYR 181

Query: 514 TQTQTLAIIGYMAP 527
            Q ++L  I +M P
Sbjct: 182 VQPKSLLPIRWMPP 195

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   +  +IH D+K  N L
Sbjct: 93  VVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVL 147

Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           L  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 148 LGMDGSVKLTDFGFCAQITPE-----QSKRSTMVGTPYWMAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 37/145 (25%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVF--HFSCSNED--------FRAL-----------V 430
           IG G+F  V KA+  + G  +AIK    HF    +          R L           V
Sbjct: 7   IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEV 66

Query: 431 LEYTTNGSLEKV-------LY----SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           L     G L  V       LY         L   +  + M  +  +L+++H      I H
Sbjct: 67  LFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFH 123

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAK 504
            D+KP N L+ D+I+  L+DFG  +
Sbjct: 124 RDIKPENILIKDDIL-KLADFGSCR 147

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 49/173 (28%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSNEDFRALV--------------------- 430
           +G+G++GSVYK   +  G+  A+K          F  ++                     
Sbjct: 9   LGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAF 68

Query: 431 ---------LEYTTNGSLEKVLYSSNYIL----DILQRLNIMIDVTSALEYLHFGYSTPI 477
                    +EY   GSL+K+            D+L+R  I   V   L++L   ++  I
Sbjct: 69  FIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRR--ITYAVVKGLKFLKEEHN--I 124

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           IH D+KP N L++ N    L DFG++  L     S+ +T     IG   YMAP
Sbjct: 125 IHRDVKPTNVLVNGNGQVKLCDFGVSGNLV---ASLAKTN----IGCQSYMAP 170

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 36/144 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF-AIKVFHFSCSNED-----FR------------------- 427
           IG G++G+V+KA+ ++  E  A+K       +E       R                   
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67

Query: 428 -------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
                   LV EY  +  L+K   S N  +D     + M  +   L + H   S  ++H 
Sbjct: 68  LHSDKKLTLVFEYC-DQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHR 123

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAK 504
           DLKP N L++ N    L+DFG+A+
Sbjct: 124 DLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           LV+E  + G L K L      + +   + +M  V+  ++YL        +H DL   N L
Sbjct: 71  LVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVL 127

Query: 489 LDDNIVAHLSDFGIAKLLTGED 510
           L +   A +SDFG++K L  +D
Sbjct: 128 LVNQHYAKISDFGLSKALGADD 149

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 429 LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
           +V EY + GSL   L       L +   +++   V + + Y+        IH DL+  N 
Sbjct: 77  IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANI 133

Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           L+ D +V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 134 LVGDGLVCKIADFGLARLI--EDNEYTARQGAKFPIKWTAP 172

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++   +D   LVL     G L+  +Y+  N   +  + L    ++   LE LH       
Sbjct: 67  YAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---RENT 123

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIA-KLLTGEDQSMTQTQTLAIIGYMAP 527
           ++ DLKP N LLDD     +SD G+A K+  GE    +    +  +GYMAP
Sbjct: 124 VYRDLKPENILLDDYGHIRISDLGLAVKIPEGE----SIRGRVGTVGYMAP 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 42/147 (28%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSNE---DFRA-------------------- 428
           IGRG+FG V+  RL+ D    A+K    SC      D +A                    
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVK----SCRETLPPDLKAKFLQEARILKQYSHPNIVRL 58

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +V+E    G     L +    L + + + ++ +  + +EYL    S   
Sbjct: 59  IGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLE---SKHC 115

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           IH DL   N L+ +  V  +SDFG+++
Sbjct: 116 IHRDLAARNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 55/185 (29%)

Query: 391 NLIGRGSFGSVYKARLQ-DG--MEFAIKVF-----------------------HF----- 419
           ++IG G+FG V KAR++ DG  M+ AIK                         H      
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 420 ---SCSNEDFRALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMID 461
              +C +  +  L +EY  +G+L   L  S  +               L   Q L+   D
Sbjct: 61  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 120

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           V   ++YL        IH DL   N L+ +N VA ++DFG+++   G++  + +T     
Sbjct: 121 VARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRLP 174

Query: 522 IGYMA 526
           + +MA
Sbjct: 175 VRWMA 179

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 6/49 (12%)

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           L+Y+H   S  ++H DLKP N L+++N    + DFG+A++   +D  MT
Sbjct: 121 LKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARI---QDPQMT 163

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 45/180 (25%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQDGME-FAIKVF-------------------------- 417
           + F    +IGRG+FG V   +L++  + FA+K+                           
Sbjct: 1   EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDN 60

Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNI--MIDVTSALEY 468
                 H++  +E+   LV++Y   G L  +L    + + + + R  +  M+    ++  
Sbjct: 61  QWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ 120

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG-IAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LH+      +H D+KP N L+D N    L+DFG   KL+  ED ++  +  +    Y++P
Sbjct: 121 LHY------VHRDIKPDNILMDMNGHIRLADFGSCLKLM--EDGTVQSSVAVGTPDYISP 172

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 38/147 (25%)

Query: 392 LIGRGSFGSVYKARLQDGME-FAIKVFH-------------------------------- 418
           ++G+GSFG V  A L+   E +A+KV                                  
Sbjct: 2   VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQL 61

Query: 419 FSC-SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
            SC   +D    V+EY   G L   +  S    D  +      ++   L++LH      I
Sbjct: 62  HSCFQTKDRLFFVMEYVNGGDLMFHIQRSG-RFDEPRARFYAAEIVLGLQFLH---ERGI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           I+ DLK  N LLD      ++DFG+ K
Sbjct: 118 IYRDLKLDNVLLDSEGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 43/168 (25%)

Query: 393 IGRGSFGSVYKA-RLQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AIK  +           NE                    
Sbjct: 27  IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 86

Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   AL++LH   S  +IH D+
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALDFLH---SNQVIHRDI 141

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPE-----QSKRSTMVGTPYWMAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 47/170 (27%), Positives = 64/170 (37%), Gaps = 40/170 (23%)

Query: 392 LIGRGSFGSVYKARLQDGME-FAIKVF--------------------------------- 417
           ++G+GSFG V  A L+   E +AIKV                                  
Sbjct: 2   VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTAL 61

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           H     +D    V+EY   G L   +  S    +   R     +VT AL +LH      +
Sbjct: 62  HCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRF-YAAEVTLALMFLH---RHGV 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           I+ DLK  N LLD      L+DFG+ K   G    +T T       Y+AP
Sbjct: 118 IYRDLKLDNILLDAEGHCKLADFGMCK--EGILNGVTTTTFCGTPDYIAP 165

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLF 247
           LDL  N+L+      F  L  L+ L L  N LTSI       L  +  LD   N  
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH 418
           I   S   V++A L+DG E A+KV  
Sbjct: 19  IAAASIAQVHRAVLKDGEEVAVKVQR 44

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 42/171 (24%)

Query: 392 LIGRGSFGSVYKARLQDGMEF-AIKVF-------------------------------HF 419
           ++G+GSFG V  A L+   EF AIK                                 H 
Sbjct: 2   VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHL 61

Query: 420 SCS--NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
            C+   ++    V+EY   G L   + SS    D  +      ++   L++LH      I
Sbjct: 62  FCTFQTKEHLFFVMEYLNGGDLMFHIQSSGR-FDEARARFYAAEIICGLQFLH---KKGI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKL-LTGEDQSMTQTQTLAIIGYMAP 527
           I+ DLK  N LLD +    ++DFG+ K  + GE ++ T   T     Y+AP
Sbjct: 118 IYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGT---PDYIAP 165

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT-GEDQSMTQTQTLAIIG 523
            L+Y+H   S  ++H DLKP N LL+ N    + DFG+A++     D +   T+ +A   
Sbjct: 118 GLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRW 174

Query: 524 YMAP 527
           Y AP
Sbjct: 175 YRAP 178

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 392 LIGRGSFGSVYKARL-QDGMEFAIKVFH---------FSCSNEDFRAL------------ 429
           ++G+GSFG V  ARL + G  +A+KV             C+  + R L            
Sbjct: 2   VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQL 61

Query: 430 ------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                       V+E+   G L   +  S    +   R     ++TSAL +LH      I
Sbjct: 62  YCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF-YAAEITSALMFLH---DKGI 117

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           I+ DLK  N LLD      L+DFG+ K
Sbjct: 118 IYRDLKLDNVLLDHEGHCKLADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 37/169 (21%)

Query: 392 LIGRGSFGSVYKA-RLQDG----MEFAIKVFHFSCSNEDFRA------------------ 428
           L+G G FG+V+K   + +G    +  AIK        + F+                   
Sbjct: 14  LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVR 73

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      LV + +  GSL   +      LD  + LN  + +   + YL       +
Sbjct: 74  LLGICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRM 130

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           +H +L   N LL  + +  ++DFG+A LL  +D+    ++    I +MA
Sbjct: 131 VHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMA 179

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 429 LVLEYTTNGSLEKVLYSSNYI------LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
           LV+E+   G L+  L S             LQR+    ++   L +LH       IH DL
Sbjct: 72  LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRM--ACEIALGLLHLH---KNNFIHSDL 126

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              N LL  ++   + D+G++     ED  +T  Q    + ++AP
Sbjct: 127 ALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAP 171

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 35/142 (24%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIK-VFHFSCSNEDFRA----------------------- 428
           +G G FG V+  + +  ++ AIK +   + S EDF                         
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQ 71

Query: 429 ----LVLEYTTNGSLEKVLYSSNYIL--DILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
               +V E+  NG L   L      L  D+L  L++  DV   +EYL        IH DL
Sbjct: 72  KPLYIVTEFMENGCLLNYLRQRQGKLSKDML--LSMCQDVCEGMEYLE---RNSFIHRDL 126

Query: 483 KPHNKLLDDNIVAHLSDFGIAK 504
              N L+    V  +SDFG+ +
Sbjct: 127 AARNCLVSSTGVVKVSDFGMTR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 53/153 (34%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNG---------SLEKV 442
           IG G++G VYKAR    G   A+K             + LE    G         SL K 
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALK------------KIRLETEDEGVPSTAIREISLLKE 54

Query: 443 LYSSNYI--LDIL---QRL-------------------NIMIDVTSALEYLH-------F 471
           L   N +  LD++    +L                      +D      YL+       +
Sbjct: 55  LNHPNIVRLLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAY 114

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
            +S  ++H DLKP N L+D      L+DFG+A+
Sbjct: 115 CHSHRVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 347 FGLISRCQKRAT-KLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR 405
           FG +  CQ RAT K+     ++ +  ++R                    +G   ++ + R
Sbjct: 13  FGEVCACQVRATGKMYACKKLEKKRIKKR--------------------KGEAMALNEKR 52

Query: 406 LQDGMEFAIKV-FHFSCSNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVT 463
           + + +     V   ++   +D   LVL     G L+  +Y+  N   D  + +    ++ 
Sbjct: 53  ILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELC 112

Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA-KLLTGEDQSMTQTQTLAII 522
             LE L       I++ DLKP N LLDD     +SD G+A ++  GE    T    +  +
Sbjct: 113 CGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE----TVRGRVGTV 165

Query: 523 GYMAP 527
           GYMAP
Sbjct: 166 GYMAP 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 283 KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS 326
            +L+ L L +N++   +P    +L +LE+LDLS N ++++ PLS
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 54/174 (31%)

Query: 393 IGRGSFGSVYKARLQDGMEF-AIKVFH--------------------------------F 419
           +G+G +G V+ A+ +D  E  A+K                                   +
Sbjct: 9   VGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLY 68

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-FGYSTPII 478
           +  ++++  L +EY   G   + L ++  +L        M ++  A++ LH  GY    I
Sbjct: 69  AFQDDEYLYLAMEYVPGGDF-RTLLNNLGVLSEDHARFYMAEMFEAVDALHELGY----I 123

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA--IIG---YMAP 527
           H DLKP N L+D +    L+DFG++K             T A  ++G   YMAP
Sbjct: 124 HRDLKPENFLIDASGHIKLTDFGLSK----------GIVTYANSVVGSPDYMAP 167

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 48/180 (26%)

Query: 393 IGRGSFGSVYKARLQD------GMEFAIKVFHFSCSNEDFRA------------------ 428
           +G+GSFG VY+   +           AIK  + + S  +                     
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 429 ------------LVLEYTTNGSLEKVLYS--------SNYILDILQR-LNIMIDVTSALE 467
                       +V+E    G L+  L S               LQ+ + +  ++   + 
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           YL    +   +H DL   N ++ +++   + DFG+ + +   D      + L  + +MAP
Sbjct: 134 YLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP 190

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 45/157 (28%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILD 451
           IG G++G VYKAR    G   A+K        E      L      SL ++L  S YI+ 
Sbjct: 9   IGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREI---SLLQMLSESIYIVR 65

Query: 452 ILQRLNIMIDVTSALEYLHFGY----------------STP------------------- 476
           +L   ++         YL F Y                  P                   
Sbjct: 66  LLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAH 125

Query: 477 -----IIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLT 507
                ++H DLKP N L+D    +  ++D G+ +  +
Sbjct: 126 CHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFS 162

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 411 EFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH 470
           E+ +K++ +S  ++D    V++Y   G +  +L       + L R  I  ++T A+E +H
Sbjct: 61  EWVVKLY-YSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIA-ELTCAIESVH 118

Query: 471 -FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG 508
             G+    IH D+KP N L+D +    L+DFG   L TG
Sbjct: 119 KMGF----IHRDIKPDNILIDRDGHIKLTDFG---LCTG 150

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 37/146 (25%)

Query: 392 LIGRGSFGSVYKARLQ-DGMEFAIKVFH-------------------------------- 418
           L+G+G+FG V   R +  G  +A+K+                                  
Sbjct: 2   LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 61

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
           ++    D    V+EY   G L   L       +   R     ++ SALEYLH   S  ++
Sbjct: 62  YAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARF-YGAEIVSALEYLH---SRDVV 117

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAK 504
           + D+K  N +LD +    ++DFG+ K
Sbjct: 118 YRDIKLENLMLDKDGHIKITDFGLCK 143

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDIL------------QRLNIMIDVTS 464
           F+  C   D   +V EY  +G L K L +      ++            Q L+I   + +
Sbjct: 72  FYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAA 131

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
            + YL    S   +H DL   N L+ +N++  + DFG+++ +   D       T+  I +
Sbjct: 132 GMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRW 188

Query: 525 MAP 527
           M P
Sbjct: 189 MPP 191

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	527
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.95
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.94
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.94
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.94
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.93
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.93
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.93
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.93
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.93
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.92
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.92
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.92
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.91
KOG0605	550	consensus NDR and related serine/threonine kinases	99.91
KOG0578	550	consensus p21-activated serine/threonine protein k	99.9
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.9
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.9
KOG0198	313	consensus MEKK and related serine/threonine protei	99.9
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.9
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.9
KOG3653	534	consensus Transforming growth factor beta/activin	99.89
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.89
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.89
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.88
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.88
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.88
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.88
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.88
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.88
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.88
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.88
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.88
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.87
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.87
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.87
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.87
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.87
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.87
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.87
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.87
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.87
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.87
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.87
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.87
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.87
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.87
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.87
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.87
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.87
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.87
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.87
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.87
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.86
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.86
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.86
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.86
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.86
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.86
PTZ00283	496	serine/threonine protein kinase; Provisional	99.86
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.86
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.86
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.86
KOG0589	426	consensus Serine/threonine protein kinase [General	99.86
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.86
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.86
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.85
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.85
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.85
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.85
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.85
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.85
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.85
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.85
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.85
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.85
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.85
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.85
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.85
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.85
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.85
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.85
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.85
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.85
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.85
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.85
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.85
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.84
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.84
PTZ00267	478	NIMA-related protein kinase; Provisional	99.84
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.84
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.84
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.84
PHA03211	461	serine/threonine kinase US3; Provisional	99.84
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.84
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.84
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.84
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.84
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.84
KOG0610	459	consensus Putative serine/threonine protein kinase	99.84
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.84
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.84
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.84
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.84
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.84
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.83
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.83
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.83
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.83
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.83
PHA03212	391	serine/threonine kinase US3; Provisional	99.83
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.83
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PTZ00036	440	glycogen synthase kinase; Provisional	99.83
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.83
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.83
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PHA03209	357	serine/threonine kinase US3; Provisional	99.82
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.82
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.82
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.82
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.82
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.82
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.82
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.82
PTZ00284	467	protein kinase; Provisional	99.82
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.82
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.82
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.82
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.82
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.82
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.82
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.82
KOG0586	596	consensus Serine/threonine protein kinase [General	99.82
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.82
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.82
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.82
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.82
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.82
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.81
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.81
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.81
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.81
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.81
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.81
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.81
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.81
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.81
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.81
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.81
PRK09188	365	serine/threonine protein kinase; Provisional	99.81
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.81
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.81
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.81
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.81
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.81
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.81
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.81
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.81
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.8
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.8
PHA03207	392	serine/threonine kinase US3; Provisional	99.8
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.8
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.8
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.8
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.8
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.8
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.8
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.8
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.8
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.8
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.8
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.8
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.8
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.8
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.8
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.8
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.8
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.8
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.8
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.8
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.8
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.8
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.8
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.8
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.8
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.8
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.8
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.79
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.79
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.79
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.79
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.79
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.79
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.79
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.79
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.79
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.79
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.79
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.79
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.79
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.79
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.79
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.79
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.79
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.79
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.79
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.79
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.79
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.79
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.79
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.79
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.79
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.79
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.79
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.79
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.79
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.79
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.79
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.79
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.79
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.79
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.79
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.79
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.79
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.79
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.79
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.79
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.78
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.78
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.78
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.78
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.78
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.78
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.78
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.78
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.78
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.78
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.78
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.78
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.78
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.78
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.78
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.78
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.78
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.78
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.78
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.78
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.78
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.78
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.78
PHA02988	283	hypothetical protein; Provisional	99.78
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.78
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.78
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.78
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.78
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.78
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.78
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.78
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.78
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.78
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.78
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.77
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.77
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.77
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.77
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.77
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.77
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.77
PHA02882	294	putative serine/threonine kinase; Provisional	99.77
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.77
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.77
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.77
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.76
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.76
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.76
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.76
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.76
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.76
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.76
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.76
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.76
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.76
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.76
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.76
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.76
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.76
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.76
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.76
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.76
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.76
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.76
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.76
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.76
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.75
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.75
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.75
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.75
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.75
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.75
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.75
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.75
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.75
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.75
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.75
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.75
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.75
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.75
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.75
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.75
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.75
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.75
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.74
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.74
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.74
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.74
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.74
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.74
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.74
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.74
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.74
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.74
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.74
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.74
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.74
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.74
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.74
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.74
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.74
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.74
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.74
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.74
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.73
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.73
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.73
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.73
PLN00009	294	cyclin-dependent kinase A; Provisional	99.73
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.73
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.73
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.73
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.73
KOG0584	632	consensus Serine/threonine protein kinase [General	99.73
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.72
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.72
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.72
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.72
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.72
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.72
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.72
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.72
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.72
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.72
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.72
PHA03210	501	serine/threonine kinase US3; Provisional	99.72
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.71
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.71
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.71
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.71
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.71
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.71
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.71
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.71
KOG1152	772	consensus Signal transduction serine/threonine kin	99.7
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.7
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.7
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.7
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.7
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.7
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.69
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.69
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.69
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.69
smart00090	237	RIO RIO-like kinase.	99.68
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.67
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.67
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.67
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.67
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.66
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.66
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.66
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.65
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.65
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.65
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.62
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.62
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.6
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.59
PRK14879	211	serine/threonine protein kinase; Provisional	99.59
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.57
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.57
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.55
PRK12274	218	serine/threonine protein kinase; Provisional	99.53
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.52
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.52
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.52
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.51
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.49
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.49
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.48
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.47
PRK10345	210	hypothetical protein; Provisional	99.45
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.38
PLN00181	793	protein SPA1-RELATED; Provisional	99.36
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.33
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.3
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
PLN03150	623	hypothetical protein; Provisional	99.14
PLN03150	623	hypothetical protein; Provisional	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.06
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.97
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.95
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.83
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.7
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.65
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.64
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
KOG3087	229	consensus Serine/threonine protein kinase [General	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.58
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.55
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.49
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.38
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.38
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.33
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.3
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.92

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-56  Score=507.89  Aligned_cols=487  Identities=28%  Similarity=0.453  Sum_probs=330.0

Q ss_pred             hcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCC
Q 035895           20 CYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKY   92 (527)
Q Consensus        20 ~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~   92 (527)
                      +..+..++ ++|++++..|..|.++++|+.|++++|.+.+.+|.      .++.|+|++|.++...+.     .+.++++
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~  309 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-----LVIQLQN  309 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-----hHcCCCC
Confidence            34666777 77778877787888888888888888877665553      356777777777643221     2344455


Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCc------------------------CCcEEEee
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT------------------------DLISIDLG  148 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L~~L~L~  148 (527)
                      |+.|++++|.+++..|..+..+. +|+.|++++|.+++.+|..+..++                        +|+.|+++
T Consensus       310 L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        310 LEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            55555555555544444444432 345555555544444444444444                        44444444


Q ss_pred             cCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-C
Q 035895          149 GNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-I  227 (527)
Q Consensus       149 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-l  227 (527)
                      +|++.+..|..+..+++|+.|++++|++++..|..|..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+ +
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  468 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL  468 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence            554444455555555556666666666655556566666666666666666666566555566666666666666654 3


Q ss_pred             chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCC
Q 035895          228 PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV  307 (527)
Q Consensus       228 p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  307 (527)
                      |. .....+|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..|..++
T Consensus       469 p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        469 PD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             Cc-ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            33 23456777888888888888888888888999999999999888999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCccchhhhccCCeeEeeeeeeecccc---------------ch-----------hhhcccccCCC
Q 035895          308 SLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFG---------------LI-----------SRCQKRATKLP  361 (527)
Q Consensus       308 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~~~~~---------------~l-----------~~c~~~~~~~~  361 (527)
                      +|+.|+|++|++++.+|..+..+..|+.++++.+.+....+               ..           +.|........
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~  627 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS  627 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccce
Confidence            99999999999999999999999999998888655521110               00           11111000000


Q ss_pred             C---C----------------------CC---CC----ccccc----------ccccHHHHhhhcCCccccceeccCCce
Q 035895          362 N---V----------------------SN---MQ----PQASR----------RRFSYQELLRATDGFSANNLIGRGSFG  399 (527)
Q Consensus       362 ~---~----------------------~~---~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~lg~G~~g  399 (527)
                      .   +                      ..   ..    ....+          +.++++   ...+.|+..++||+|+||
T Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ig~G~~g  704 (968)
T PLN00113        628 WWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITIN---DILSSLKEENVISRGKKG  704 (968)
T ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHH---HHHhhCCcccEEccCCCe
Confidence            0   0                      00   00    00000          011222   223457778899999999


Q ss_pred             EEEEEEc-cCCcEEEEEEEee-------------------------ccCccceeEEEEEeccCCcHHHHHHhcCCCCCHH
Q 035895          400 SVYKARL-QDGMEFAIKVFHF-------------------------SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDIL  453 (527)
Q Consensus       400 ~vy~~~~-~~~~~vavK~~~~-------------------------~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~  453 (527)
                      .||+|+. .+++.||||++..                         .|..++..++||||+++|+|.++++.    ++|.
T Consensus       705 ~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~----l~~~  780 (968)
T PLN00113        705 ASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN----LSWE  780 (968)
T ss_pred             eEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc----CCHH
Confidence            9999986 5789999998642                         23345567899999999999999853    7899


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       454 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+|+.++|+|++|+|+.++++|+|||+||+||+++.++.+++. ||.+......      +...+|.+||||
T Consensus       781 ~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~------~~~~~t~~y~aP  847 (968)
T PLN00113        781 RRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD------TKCFISSAYVAP  847 (968)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC------CCccccccccCc
Confidence            999999999999999997778899999999999999999888876 6665543211      123567889998

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-37  Score=351.15  Aligned_cols=322  Identities=34%  Similarity=0.518  Sum_probs=190.9

Q ss_pred             Cccccccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc-------ccceEEcccccccCCCCC
Q 035895            9 RQLDGGMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS-------IVDELSLSDNYLTSSTPE   80 (527)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~-------~l~~L~Ls~N~l~~~~~~   80 (527)
                      -|-|.|+.++...++..+| +.|.+++..+.+|..+++|+.|+|++|.+.+.+|.       .++.|+|++|++++..+.
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            4555666655445788888 88999999999999999999999999998876653       477889999988753221


Q ss_pred             CcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccc
Q 035895           81 LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITL  160 (527)
Q Consensus        81 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  160 (527)
                             ..+++|++|+|++|.+++.+|..+..+. +|++|+|++|.+.+..|..+.++++|++|+|++|.+++..|..+
T Consensus       137 -------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l  208 (968)
T PLN00113        137 -------GSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL  208 (968)
T ss_pred             -------cccCCCCEEECcCCcccccCChHHhcCC-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH
Confidence                   2345556666666655555555555543 45666666555555555555555555555555555555555555


Q ss_pred             cCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-CchhhhCCCCccE
Q 035895          161 GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILY  239 (527)
Q Consensus       161 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~  239 (527)
                      +.+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..|..|+++++|++|++++|++++ +|..+.++++|+.
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            555555555555555555555555555555555555555555555555555555555555555543 4555555555555


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcc
Q 035895          240 LDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL  319 (527)
Q Consensus       240 l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  319 (527)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus       289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence            55555555555555555555555555555555555555555555555555555555544555555555555555555555


Q ss_pred             cccCccchhhhccCCeeEe
Q 035895          320 SEIIPLSLEKLLYLNILLI  338 (527)
Q Consensus       320 ~~~~p~~~~~l~~L~~L~~  338 (527)
                      ++.+|..+..+..|+.|++
T Consensus       369 ~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        369 TGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             EeeCChhHhCcCCCCEEEC
Confidence            4444444444333333333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-37  Score=302.28  Aligned_cols=331  Identities=25%  Similarity=0.250  Sum_probs=209.5

Q ss_pred             ccccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccc-----ccccceEEcccccccCCCCCC-cc-
Q 035895           12 DGGMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRL-----SSIVDELSLSDNYLTSSTPEL-SF-   83 (527)
Q Consensus        12 ~~~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~-----~~~l~~L~Ls~N~l~~~~~~~-~~-   83 (527)
                      ++.+.|+.=+..+++| |+|+++.+.+..|.++++|+++++.+|.+...+     ...++.|+|.+|.|+++..+- .+ 
T Consensus        69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l  148 (873)
T KOG4194|consen   69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL  148 (873)
T ss_pred             ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhH
Confidence            4455666667788899 999999999999999999999999999875221     123556666666666543320 00 


Q ss_pred             -----------------cccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEE
Q 035895           84 -----------------LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISID  146 (527)
Q Consensus        84 -----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  146 (527)
                                       .++|..-.++++|+|++|.|+..-...|..+. +|..|.|++|+|+..++..|.++++|+.|+
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcccccCHHHhhhcchhhhhh
Confidence                             01233334455555555555544444444443 455555555555555555555555555555


Q ss_pred             eecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC
Q 035895          147 LGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS  226 (527)
Q Consensus       147 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (527)
                      |..|+|...--.+|.+|++|+.|.|..|.+.......|..+.++++|+|+.|+++..-.+++-+|++|+.|+||+|.|..
T Consensus       228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence            55555543333445555555555555555554444555566666666666666665555556666666666666666666


Q ss_pred             Cc-hhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC---C
Q 035895          227 IP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN---S  302 (527)
Q Consensus       227 lp-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~  302 (527)
                      +- +.+...+.|..|+++.|+++...+.+|..|..|++|+|++|++...-..+|.++++|++|||++|.+++.+.+   .
T Consensus       308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence            53 2333345666666666666666666666666666666666666655556677777888888888887765543   5


Q ss_pred             CCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          303 FDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      |.++++|+.|++.+|++..+....|..+..|..|++..+.+
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            77888888888888888888888888888888888776555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=290.68  Aligned_cols=316  Identities=23%  Similarity=0.276  Sum_probs=281.1

Q ss_pred             hhhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc------cccceEEcccccccCCCCCCcccccCCC
Q 035895           17 GDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS------SIVDELSLSDNYLTSSTPELSFLSSMSN   89 (527)
Q Consensus        17 ~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~------~~l~~L~Ls~N~l~~~~~~~~~~~~~~~   89 (527)
                      +.-...+..++ .+|.|+.+.+.++.-++.|+.||||.|.++....      ..+++|+|++|.|+.+...     .|.+
T Consensus       121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~-----~F~~  195 (873)
T KOG4194|consen  121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG-----HFDS  195 (873)
T ss_pred             cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc-----cccc
Confidence            34444566677 7899999999999999999999999998763221      2478999999999987553     6888


Q ss_pred             CCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEE
Q 035895           90 CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFL  169 (527)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  169 (527)
                      +.+|.+|.|++|+++...+..|.++. .|+.|+|..|+|....--.|.++++|+.|.|..|.|....+..|-.+.++++|
T Consensus       196 lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  196 LNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             cchheeeecccCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence            99999999999999988777887775 69999999999987768889999999999999999999889999999999999


Q ss_pred             eccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEEccCCccc
Q 035895          170 SFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFV  248 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~  248 (527)
                      +|+.|++...-..++.++++|++|+||+|.|..+.++++.-.++|++|+|++|+|+.+|+ .+..+..|+.|.++.|.+.
T Consensus       275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            999999998888899999999999999999999999999999999999999999999875 5667889999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCCCCCCChh---hhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCcc
Q 035895          249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPT---TIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL  325 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  325 (527)
                      ..-...|..+++|+.|||++|.++..+.+   .|.+|++|+.|.+.+|++.......|.++++|+.|||.+|.|..+.|.
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            88888899999999999999999876654   589999999999999999988888999999999999999999999999


Q ss_pred             chhhhccCCeeEee
Q 035895          326 SLEKLLYLNILLIV  339 (527)
Q Consensus       326 ~~~~l~~L~~L~~~  339 (527)
                      .|..+ .|+.|.+.
T Consensus       435 AFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  435 AFEPM-ELKELVMN  447 (873)
T ss_pred             ccccc-hhhhhhhc
Confidence            99887 66665433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=266.83  Aligned_cols=156  Identities=46%  Similarity=0.704  Sum_probs=135.7

Q ss_pred             ccccccHHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEee-----------------------------cc
Q 035895          371 SRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-----------------------------SC  421 (527)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-----------------------------~~  421 (527)
                      ..+.|+++++..||++|...++||+|+||.||+|.+++|+.||||++..                             +|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            5677999999999999999999999999999999999999999997632                             35


Q ss_pred             Cccc-eeEEEEEeccCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 035895          422 SNED-FRALVLEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       422 ~~~~-~~~lv~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                      .+.+ .+.+|||||++|+|.++++.... .++|.+|++||.++|+||+|||+.+.++||||||||+|||+|+++++||+|
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence            5556 48999999999999999987665 889999999999999999999998888999999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|+..+... ....+...||.+|+||
T Consensus       221 FGLa~~~~~~~-~~~~~~~~gt~gY~~P  247 (361)
T KOG1187|consen  221 FGLAKLGPEGD-TSVSTTVMGTFGYLAP  247 (361)
T ss_pred             ccCcccCCccc-cceeeecCCCCccCCh
Confidence            99998765411 1111111789999998

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=8.5e-30  Score=243.49  Aligned_cols=139  Identities=36%  Similarity=0.545  Sum_probs=118.1

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee-------------------------------ccCccceeEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-------------------------------SCSNEDFRAL  429 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-------------------------------~~~~~~~~~l  429 (527)
                      ...++|...+.||+|+||+||+|+++ ++.+||||.+..                               .+...+..++
T Consensus         7 ~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~l   86 (429)
T KOG0595|consen    7 RVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYL   86 (429)
T ss_pred             cccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEE
Confidence            45678999999999999999999974 689999998742                               2345678899


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC------CcEEEeecccc
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN------IVAHLSDFGIA  503 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~------~~~kl~Dfg~a  503 (527)
                      |||||.||||.+++++.+ .++......++.|+|.|+++||   +++||||||||+|||++..      -.+||+|||+|
T Consensus        87 VMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfA  162 (429)
T KOG0595|consen   87 VMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFA  162 (429)
T ss_pred             EEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchh
Confidence            999999999999998765 5677778889999999999999   9999999999999999754      46899999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |.+....   .....+|++.||||
T Consensus       163 R~L~~~~---~a~tlcGSplYMAP  183 (429)
T KOG0595|consen  163 RFLQPGS---MAETLCGSPLYMAP  183 (429)
T ss_pred             hhCCchh---HHHHhhCCccccCH
Confidence            9986432   22347899999999

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.2e-31  Score=260.72  Aligned_cols=311  Identities=25%  Similarity=0.326  Sum_probs=259.4

Q ss_pred             ccCCCccccccchhhhcchhcccCCCceeecCchhhhcCCCCCEEEccccccccccccc------cceEEcccccccCCC
Q 035895            5 KLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI------VDELSLSDNYLTSST   78 (527)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~~------l~~L~Ls~N~l~~~~   78 (527)
                      ||+...+.|.+.--.|.|-..+-.+|--.+-+|..++.|..|++||||+|++.. .|..      .-.|+||+|+|.++|
T Consensus        64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIP  142 (1255)
T KOG0444|consen   64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIP  142 (1255)
T ss_pred             hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCC
Confidence            444455666666655655443333333345567788899999999999998864 3433      346999999999988


Q ss_pred             CCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccc-ccCc
Q 035895           79 PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLN-GSIS  157 (527)
Q Consensus        79 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  157 (527)
                      ..+     |.+++.|-.||||+|++.. +|..+..+. .|+.|+|++|.+....-..+..|++|.+|.+++.+=+ ..+|
T Consensus       143 n~l-----finLtDLLfLDLS~NrLe~-LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  143 NSL-----FINLTDLLFLDLSNNRLEM-LPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             chH-----HHhhHhHhhhccccchhhh-cCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence            754     7789999999999999985 677777776 7999999999987655566677888999999887643 3578


Q ss_pred             ccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCc
Q 035895          158 ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDI  237 (527)
Q Consensus       158 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L  237 (527)
                      .++..+.+|..+|+|.|.+. .+|..+..+++|+.|+||+|+|+. +.-+.+...+|++|+||.|+++.+|+.++.++.|
T Consensus       216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL  293 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL  293 (1255)
T ss_pred             CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence            88999999999999999998 889999999999999999999984 5556777789999999999999999999999999


Q ss_pred             cEEEccCCccc-ccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCC
Q 035895          238 LYLDFWSNLFV-GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN  316 (527)
Q Consensus       238 ~~l~l~~n~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~  316 (527)
                      +.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. .+|..++.+..|+.|.|++|++. .+|+.+.-++.|+.||+..
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence            99999999886 458999999999999999999986 89999999999999999999997 7999999999999999999


Q ss_pred             CcccccCccch
Q 035895          317 NNLSEIIPLSL  327 (527)
Q Consensus       317 N~l~~~~p~~~  327 (527)
                      |.-...+|..-
T Consensus       372 NpnLVMPPKP~  382 (1255)
T KOG0444|consen  372 NPNLVMPPKPN  382 (1255)
T ss_pred             CcCccCCCCcc
Confidence            97666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.2e-30  Score=256.56  Aligned_cols=250  Identities=28%  Similarity=0.381  Sum_probs=175.4

Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCE
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF  168 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  168 (527)
                      .+..|.+||||+|+++. .|..+... .++-+|+||+|+|..++...|.+++.|-.||||+|++. .+|+....|..|+.
T Consensus       101 ~l~dLt~lDLShNqL~E-vP~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLRE-VPTNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT  177 (1255)
T ss_pred             ccccceeeecchhhhhh-cchhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence            44555555555555553 34444433 24555555555555444445555555555555555554 33444455555555


Q ss_pred             EeccCcccccccChhhhcCcccCeeeeecccCC-CCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcc
Q 035895          169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS-GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF  247 (527)
Q Consensus       169 L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~  247 (527)
                      |+|++|.+...--..+-.+++|++|.+++.+-+ .-+|.++..|.+|+.+|+|.|.+..+|..+.++.+|+.|++++|.+
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence            555555543222222233444555555554322 2467888899999999999999999999999999999999999998


Q ss_pred             cccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce-eecCCCCCCCCCCCEEeCCCCcccccCccc
Q 035895          248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ-GSIPNSFDDLVSLESLDLSNNNLSEIIPLS  326 (527)
Q Consensus       248 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  326 (527)
                      +. +....+...+|++|++|+|+++ .+|++++.++.|+.|++.+|+++ .-+|..++++.+|+++..++|.+ +..|..
T Consensus       258 te-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEg  334 (1255)
T KOG0444|consen  258 TE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEG  334 (1255)
T ss_pred             ee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchh
Confidence            74 4445566778999999999997 79999999999999999999986 34788999999999999998888 578999


Q ss_pred             hhhhccCCeeEeeeeeee
Q 035895          327 LEKLLYLNILLIVVVILA  344 (527)
Q Consensus       327 ~~~l~~L~~L~~~~~~~~  344 (527)
                      ++.+..|+.|.++.+-+.
T Consensus       335 lcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             hhhhHHHHHhccccccee
Confidence            999999999988876664

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.95  E-value=6.1e-28  Score=228.81  Aligned_cols=140  Identities=35%  Similarity=0.473  Sum_probs=117.6

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRA  428 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~  428 (527)
                      ...++|++.++||+|+||+||.++. ++++.+|+|+++.                                ..++++..|
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence            3467899999999999999999986 5689999998742                                235667889


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|+||+.||+|..+|.+++ .++...+..++.+|+.||+|||   +.+|||||+||+|||+|++|+++++|||+++..-.
T Consensus       102 lVld~~~GGeLf~hL~~eg-~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~  177 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQREG-RFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK  177 (357)
T ss_pred             EEEeccCCccHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccchhccc
Confidence            9999999999999997654 4666667778899999999999   99999999999999999999999999999996432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      .. ..+ ...+||+.||||
T Consensus       178 ~~-~~t-~tfcGT~eYmAP  194 (357)
T KOG0598|consen  178 DG-DAT-RTFCGTPEYMAP  194 (357)
T ss_pred             CC-Ccc-ccccCCccccCh
Confidence            21 122 237899999999

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.94  E-value=4e-27  Score=223.35  Aligned_cols=135  Identities=28%  Similarity=0.448  Sum_probs=113.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccc-eeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNED-FRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~-~~~lv~ey  433 (527)
                      +.+..+.||+|..|+|||++++ +++.+|+|+++.                              .+..+. ...++|||
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            3456789999999999999975 689999999843                              112334 58899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |.+|+|++++... +.++....-+|+.+|++||.|||+  +++||||||||+|||++..|++||||||.++.+...    
T Consensus       160 MDgGSLd~~~k~~-g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----  232 (364)
T KOG0581|consen  160 MDGGSLDDILKRV-GRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----  232 (364)
T ss_pred             cCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh----
Confidence            9999999998765 346777888999999999999993  389999999999999999999999999999987543    


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      .....+||..||||
T Consensus       233 ~a~tfvGT~~YMsP  246 (364)
T KOG0581|consen  233 IANTFVGTSAYMSP  246 (364)
T ss_pred             hcccccccccccCh
Confidence            23457899999999

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=3.9e-29  Score=237.49  Aligned_cols=309  Identities=29%  Similarity=0.432  Sum_probs=205.5

Q ss_pred             CCCceeecCchhhhcCCCCCEEEccccccccccccc-----cceEEcccccccCCCCCCccc-----------------c
Q 035895           28 SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI-----VDELSLSDNYLTSSTPELSFL-----------------S   85 (527)
Q Consensus        28 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~~-----l~~L~Ls~N~l~~~~~~~~~~-----------------~   85 (527)
                      |+|+++.+ |.++.++.+|+.++.++|.+....+++     +..++..+|+++++++...+.                 +
T Consensus        99 s~n~ls~l-p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~  177 (565)
T KOG0472|consen   99 SHNKLSEL-PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE  177 (565)
T ss_pred             ccchHhhc-cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH
Confidence            55555544 334555555666666666554333332     233444455554444322110                 0


Q ss_pred             cCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCC
Q 035895           86 SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK  165 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  165 (527)
                      ..-+++.|++||...|-+.. +|+.++.+. +|+.|||++|.|. ..| .|.++..|++|+++.|.|..........+++
T Consensus       178 ~~i~m~~L~~ld~~~N~L~t-lP~~lg~l~-~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  178 NHIAMKRLKHLDCNSNLLET-LPPELGGLE-SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNS  253 (565)
T ss_pred             HHHHHHHHHhcccchhhhhc-CChhhcchh-hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence            12236677777777777764 566666664 6788888888886 344 6778888888888888887444444448888


Q ss_pred             CCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC--------------------
Q 035895          166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT--------------------  225 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------------  225 (527)
                      +.+|||++|+++ ..|..++-+.+|++||+|+|.|++ .|.++++| .|+.|-+.+|.+.                    
T Consensus       254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             ceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            899999999988 788888989999999999999884 56667887 6777777776543                    


Q ss_pred             ---------------------------------------------CCchhhhCCCC---ccEEEccCCcc----------
Q 035895          226 ---------------------------------------------SIPSILWNLKD---ILYLDFWSNLF----------  247 (527)
Q Consensus       226 ---------------------------------------------~lp~~~~~l~~---L~~l~l~~n~~----------  247 (527)
                                                                   .+|...|....   ....+++.|++          
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~l  410 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVEL  410 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHH
Confidence                                                         22222211111   22344444443          


Q ss_pred             -------------cccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee-----------------
Q 035895          248 -------------VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG-----------------  297 (527)
Q Consensus       248 -------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------  297 (527)
                                   .+.+|..++.+++|..|+|++|-+- .+|..++.+..||.|+++.|++..                 
T Consensus       411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLAS  489 (565)
T ss_pred             HHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhc
Confidence                         3345666778899999999877775 789999999999999999887752                 


Q ss_pred             ------ecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeeecc
Q 035895          298 ------SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALK  346 (527)
Q Consensus       298 ------~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~~~  346 (527)
                            ..|+.+..+.+|..|||.+|.+. .+|..++++.+|+.|+++.++|..|
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCCC
Confidence                  12333677888889999988885 4777888889999998888887643

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.3e-27  Score=229.48  Aligned_cols=139  Identities=34%  Similarity=0.500  Sum_probs=120.3

Q ss_pred             cCCccccceeccCCceEEEEEE-ccCCcEEEEEEEeeccCc---------------------------------cceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSN---------------------------------EDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~~~~---------------------------------~~~~~l  429 (527)
                      .+.|+..++||+|.||.||+|+ ..+|+.||+|++++....                                 ....|+
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            4568889999999999999998 478999999998753211                                 235689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |+|||+. ||.-++...+-.++..+...++.|++.||+|+|   .++|+|||||.+|||+|.+|.+||+|||+|+++...
T Consensus       196 VFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~  271 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPS  271 (560)
T ss_pred             EEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeeccCC
Confidence            9999986 999999877777899999999999999999999   999999999999999999999999999999988654


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      . ....|..+.|+||.||
T Consensus       272 ~-~~~~T~rVvTLWYRpP  288 (560)
T KOG0600|consen  272 G-SAPYTSRVVTLWYRPP  288 (560)
T ss_pred             C-CcccccceEEeeccCh
Confidence            3 2335677889999998

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.94  E-value=3.2e-27  Score=219.84  Aligned_cols=141  Identities=26%  Similarity=0.371  Sum_probs=122.2

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccC---------------------------------ccce
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCS---------------------------------NEDF  426 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~---------------------------------~~~~  426 (527)
                      .+.++.|+..+.|++|+||.||+|+. ++++.||+|++++.-.                                 .-+.
T Consensus        72 Crsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~  151 (419)
T KOG0663|consen   72 CRSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDK  151 (419)
T ss_pred             cccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccce
Confidence            45667899999999999999999996 5789999999865321                                 1234


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .|+|||||+. ||..++...+..+...+...+..|+++|++|||   .+.|+|||||++|+|+.++|.+||+|||+||.+
T Consensus       152 iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~y  227 (419)
T KOG0663|consen  152 IYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKGILKIADFGLAREY  227 (419)
T ss_pred             eeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCCcEEecccchhhhh
Confidence            6899999986 999999988878888899999999999999999   999999999999999999999999999999998


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  ...|..+.|+||.||
T Consensus       228 gsp~--k~~T~lVVTLWYRaP  246 (419)
T KOG0663|consen  228 GSPL--KPYTPLVVTLWYRAP  246 (419)
T ss_pred             cCCc--ccCcceEEEeeecCH
Confidence            6542  345667889999998

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.1e-26  Score=207.17  Aligned_cols=137  Identities=32%  Similarity=0.503  Sum_probs=117.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------CccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------SNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~~~~~~~lv~e  432 (527)
                      +.|...+++|||.||.||+|+. .+|+.||||++....                               .+.+...+|+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            4578889999999999999984 689999999986421                               22344569999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++. ||+.+++.....+...+...++.++.+|++|+|   ++.|+|||+||.|+|++++|.+|++|||+||.+......
T Consensus        82 fm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   82 FMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             eccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence            9985 999999988888999999999999999999999   999999999999999999999999999999998755432


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .+..+.|.||.||
T Consensus       158 --~~~~V~TRWYRAP  170 (318)
T KOG0659|consen  158 --QTHQVVTRWYRAP  170 (318)
T ss_pred             --cccceeeeeccCh
Confidence              2334778999998

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.93  E-value=2.3e-26  Score=211.09  Aligned_cols=136  Identities=35%  Similarity=0.469  Sum_probs=117.9

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      ..++|+..+.||.|+||+|..++.+ +|.-+|+|++..                                .+.+.+..++
T Consensus        42 ~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lym  121 (355)
T KOG0616|consen   42 SLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYM  121 (355)
T ss_pred             chhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEE
Confidence            3467899999999999999999975 578899998632                                3456678899


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||++||.|..++++.+ .++...+..+|.+|+.|++|||   +.+|++||+||+|||+|.+|.+||+|||+|+.+.+.
T Consensus       122 vmeyv~GGElFS~Lrk~~-rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r  197 (355)
T KOG0616|consen  122 VMEYVPGGELFSYLRKSG-RFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR  197 (355)
T ss_pred             EEeccCCccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEecCc
Confidence            999999999999998765 4677778889999999999999   999999999999999999999999999999987643


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                          + -..+||+.|+||
T Consensus       198 ----T-~TlCGTPeYLAP  210 (355)
T KOG0616|consen  198 ----T-WTLCGTPEYLAP  210 (355)
T ss_pred             ----E-EEecCCccccCh
Confidence                1 237899999999

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-26  Score=227.69  Aligned_cols=143  Identities=34%  Similarity=0.537  Sum_probs=120.5

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee---------------------------------ccCccce
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF---------------------------------SCSNEDF  426 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~---------------------------------~~~~~~~  426 (527)
                      .+...+|...+.||+|+|++||+|+. ++++++|||++..                                 ...++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            45567899999999999999999985 5789999998632                                 1235567


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .|+|+||+++|+|-++|.+.+ .++......+|.+|+.|++|||   ++|||||||||+|||+|++|++||+|||-|+.+
T Consensus       149 LYFvLe~A~nGdll~~i~K~G-sfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGsAK~l  224 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG-SFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGSAKIL  224 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeeccccccC
Confidence            789999999999999998774 5788888889999999999999   999999999999999999999999999999987


Q ss_pred             CCCCCc---------cc--eeccccccccccC
Q 035895          507 TGEDQS---------MT--QTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~---------~~--~~~~~~t~~y~aP  527 (527)
                      ......         ..  ...++||..|.+|
T Consensus       225 ~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSP  256 (604)
T KOG0592|consen  225 SPSQKSQENPVDPNQASSRRSSFVGTAEYVSP  256 (604)
T ss_pred             ChhhccccCccCcccccCcccceeeeecccCH
Confidence            643211         11  1457899999988

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.93  E-value=2e-26  Score=211.87  Aligned_cols=137  Identities=30%  Similarity=0.390  Sum_probs=112.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-------------------------------CccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-------------------------------SNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-------------------------------~~~~~~~lv~e  432 (527)
                      +.|+...++|||+||+||+++.+ +|+.||||++...-                               ......++|+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            45888899999999999999975 69999999985421                               22345679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ||+..-|.+ +......++.....+|+.|++.|+.|+|   +++||||||||+|||++..|.+|+||||+||.+..... 
T Consensus        82 ~~dhTvL~e-Le~~p~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd-  156 (396)
T KOG0593|consen   82 YCDHTVLHE-LERYPNGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGD-  156 (396)
T ss_pred             ecchHHHHH-HHhccCCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcCCcc-
Confidence            998754444 4444455777788899999999999999   99999999999999999999999999999999874332 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ..|..++|.||+||
T Consensus       157 -~YTDYVATRWYRaP  170 (396)
T KOG0593|consen  157 -NYTDYVATRWYRAP  170 (396)
T ss_pred             -hhhhhhhhhhccCh
Confidence             23556789999998

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-26  Score=225.42  Aligned_cols=136  Identities=32%  Similarity=0.524  Sum_probs=114.5

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEEee-------------------------------ccCccc-eeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-------------------------------SCSNED-FRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-------------------------------~~~~~~-~~~lv~ey~  434 (527)
                      ....+.||+|+||+||+|.++....||||++..                               .|..+. ..++||||+
T Consensus        43 l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   43 LPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             hhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            445567999999999999998666699998753                               233333 578999999


Q ss_pred             cCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-eEecCCCCCCeeeCCCC-cEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTP-IIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.++++. .+..+++..++.+|.+||+|++|||   +++ ||||||||+|||++.++ ++||+|||+++...... 
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH---~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-  198 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLH---SEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-  198 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-
Confidence            99999999987 3678999999999999999999999   777 99999999999999997 99999999999765321 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       ...+...||+.||||
T Consensus       199 -~~~~~~~GT~~wMAP  213 (362)
T KOG0192|consen  199 -TSMTSVAGTYRWMAP  213 (362)
T ss_pred             -ccccCCCCCccccCh
Confidence             233346789999999

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.5e-25  Score=214.32  Aligned_cols=136  Identities=31%  Similarity=0.457  Sum_probs=112.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------------cCcccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------------CSNEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------------~~~~~~~  427 (527)
                      +.|.+.+.+|+|+||.|-+|.. ++|+.||||+++..                                    ...++..
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            4578889999999999999974 68999999997531                                    1234566


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC---CcEEEeeccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN---IVAHLSDFGIAK  504 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~Dfg~a~  504 (527)
                      |+||||++||+|.+.+...+ .+.......++.|++.|+.|||   ++||+||||||+|||+..+   ..+||+|||+|+
T Consensus       252 YmVlE~v~GGeLfd~vv~nk-~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK  327 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANK-YLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAK  327 (475)
T ss_pred             EEEEEEecCccHHHHHHhcc-ccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccchhh
Confidence            89999999999999886544 4555566779999999999999   9999999999999999644   889999999999


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....  +... ..+||+.|.||
T Consensus       328 ~~g~~--sfm~-TlCGTpsYvAP  347 (475)
T KOG0615|consen  328 VSGEG--SFMK-TLCGTPSYVAP  347 (475)
T ss_pred             ccccc--eehh-hhcCCccccCh
Confidence            87522  2233 37899999999

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=9.3e-27  Score=211.97  Aligned_cols=140  Identities=28%  Similarity=0.479  Sum_probs=115.8

Q ss_pred             CCccccceeccCCceEEEEEE-ccCCcEEEEEEEeecc---------------------------------CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC---------------------------------SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~~---------------------------------~~~~~~~lv  430 (527)
                      .+|++.++||+|+||+|||+. ..+|..||.|.++...                                 .+.+..+||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            458899999999999999997 5789999999886410                                 112236799


Q ss_pred             EEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          431 LEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||||.+|||...++.   .+..++.....+++.|+++||..+|.-. ++  |+||||||.||+++.+|.+|++|||++|.
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhHhH
Confidence            999999999998864   3456788889999999999999999321 44  89999999999999999999999999999


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.....  -+...+||+.||+|
T Consensus       178 l~s~~t--fA~S~VGTPyYMSP  197 (375)
T KOG0591|consen  178 LSSKTT--FAHSLVGTPYYMSP  197 (375)
T ss_pred             hcchhH--HHHhhcCCCcccCH
Confidence            875432  23457899999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=1.8e-27  Score=226.19  Aligned_cols=124  Identities=27%  Similarity=0.389  Sum_probs=102.4

Q ss_pred             eeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCC
Q 035895          194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG  273 (527)
Q Consensus       194 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  273 (527)
                      ++++|.+ +.+|..+..+++|..|+|++|-+..+|..++.+..|+.++++.|++. .+|..+..+..++.+-.++|++..
T Consensus       418 ~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  418 VLSNNKI-SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             HhhcCcc-ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence            3344444 36677778888888888888888888888888888888888888665 567777777777777777788876


Q ss_pred             CChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       274 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      ..|..+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            66677999999999999999998 78999999999999999999998

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=9.3e-26  Score=219.25  Aligned_cols=137  Identities=29%  Similarity=0.447  Sum_probs=118.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .+.|...+.||.|.||.||+|+- .+|..||||+++..                                ...+...++|
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeee
Confidence            35688999999999999999984 67899999986421                                1122378899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||+. +|++++...+..++..+...|+.||.+||+|+|   .+|+.|||+||+|||+.....+||+|||+||.+... 
T Consensus        89 fE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk-  163 (538)
T KOG0661|consen   89 FEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK-  163 (538)
T ss_pred             HHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEecccccccccccC-
Confidence            999986 999999988888999999999999999999999   999999999999999998889999999999988543 


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                        ...|+.+.|.||+||
T Consensus       164 --pPYTeYVSTRWYRAP  178 (538)
T KOG0661|consen  164 --PPYTEYVSTRWYRAP  178 (538)
T ss_pred             --CCcchhhhcccccch
Confidence              345677889999998

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-25  Score=222.41  Aligned_cols=147  Identities=28%  Similarity=0.482  Sum_probs=119.1

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCc
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSN  423 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~  423 (527)
                      .+.+++....+.+.+.+.||+|.||+||+|+|..  .||||++.+.                               |..
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            3335555566677888999999999999999975  8999998542                               223


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ... +||+.+|+|-+|+.+++..+..++..+...||.|||+|+.|||   +++|||||||+.||++.++++|||+|||++
T Consensus       460 p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLa  535 (678)
T KOG0193|consen  460 PPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLA  535 (678)
T ss_pred             Cce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccce
Confidence            333 7999999999999999988888999999999999999999999   999999999999999999999999999998


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..............-.|.+.||||
T Consensus       536 tvk~~w~g~~q~~qp~gsilwmAP  559 (678)
T KOG0193|consen  536 TVKTRWSGEQQLEQPHGSLLWMAP  559 (678)
T ss_pred             eeeeeeccccccCCCccchhhhcH
Confidence            754322111111223467889998

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.3e-24  Score=217.92  Aligned_cols=137  Identities=29%  Similarity=0.448  Sum_probs=119.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ..|+..+.||+|||+.||+++. .+|+.||+|++..                                +..+.+.+|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4589999999999999999997 8899999999742                                234567889999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+|+.|+|..++. ..+.+++.++..+..||+.|+.|||   +++|||||||..|++++++.++||+|||+|..+..+..
T Consensus        98 ELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E  173 (592)
T KOG0575|consen   98 ELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE  173 (592)
T ss_pred             EecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeecCccc
Confidence            9999999999987 4557888889999999999999999   99999999999999999999999999999998864322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .  ....+||+-|+||
T Consensus       174 r--k~TlCGTPNYIAP  187 (592)
T KOG0575|consen  174 R--KKTLCGTPNYIAP  187 (592)
T ss_pred             c--cceecCCCcccCh
Confidence            1  2247899999999

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-24  Score=219.96  Aligned_cols=139  Identities=29%  Similarity=0.424  Sum_probs=116.7

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee---------------------------------ccCcccee
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF---------------------------------SCSNEDFR  427 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~---------------------------------~~~~~~~~  427 (527)
                      ...++|.+.++||+|+||+|++|..+ +++.+|||+++.                                 +...++..
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            34678999999999999999999974 678999999753                                 22456788


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+.|||+..+.  ....++..++..||.+|+.||+|||   +++||+||||.+|||+|.+|.+||+|||+++.--
T Consensus       445 ~fvmey~~Ggdm~~~~--~~~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHI--HTDVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             EEEEEecCCCcEEEEE--ecccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEecccccccccC
Confidence            9999999999955443  2346888899999999999999999   9999999999999999999999999999999643


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ... . .....+||+.||||
T Consensus       520 ~~g-~-~TsTfCGTpey~aP  537 (694)
T KOG0694|consen  520 GQG-D-RTSTFCGTPEFLAP  537 (694)
T ss_pred             CCC-C-ccccccCChhhcCh
Confidence            221 1 23458999999999

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.91  E-value=2.5e-24  Score=212.66  Aligned_cols=120  Identities=30%  Similarity=0.473  Sum_probs=105.4

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRA  428 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~  428 (527)
                      ...++|++.++||+|+||.||.|+. .+|..+|+|++..                                +..+.+..|
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY  217 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY  217 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence            3678999999999999999999986 5699999998742                                235667889


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +||||++|||+..+|.+.+ .++...+..++.+.+.|++.+|   +.|+|||||||+|+|||..|++|++|||+++-
T Consensus       218 LiMEylPGGD~mTLL~~~~-~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~g  290 (550)
T KOG0605|consen  218 LIMEYLPGGDMMTLLMRKD-TLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTG  290 (550)
T ss_pred             EEEEecCCccHHHHHHhcC-cCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeeccccccch
Confidence            9999999999999997654 5666667778889999999999   99999999999999999999999999999863

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=5.9e-24  Score=211.57  Aligned_cols=135  Identities=30%  Similarity=0.430  Sum_probs=116.4

Q ss_pred             CccccceeccCCceEEEEEE-ccCCcEEEEEEEeeccC-----------------------------ccceeEEEEEecc
Q 035895          386 GFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS-----------------------------NEDFRALVLEYTT  435 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~~~-----------------------------~~~~~~lv~ey~~  435 (527)
                      .|+.-..||+|+.|.||.|+ ..+++.||||++...+.                             ..+..++||||++
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~  353 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYME  353 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecC
Confidence            47777899999999999997 46789999999865432                             1356689999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      ||+|.+++..  ..++..+...|+.++++||+|||   .++|+|||||.+|||++.+|.+||+|||+++.+..+..  ..
T Consensus       354 ggsLTDvVt~--~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR  426 (550)
T KOG0578|consen  354 GGSLTDVVTK--TRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KR  426 (550)
T ss_pred             CCchhhhhhc--ccccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccccC--cc
Confidence            9999999854  46889999999999999999999   99999999999999999999999999999998865432  33


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ...+||++||||
T Consensus       427 ~TmVGTPYWMAP  438 (550)
T KOG0578|consen  427 STMVGTPYWMAP  438 (550)
T ss_pred             ccccCCCCccch
Confidence            457899999998

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.90  E-value=9e-24  Score=200.42  Aligned_cols=138  Identities=30%  Similarity=0.421  Sum_probs=112.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccC--------------------------------ccc-----
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCS--------------------------------NED-----  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~--------------------------------~~~-----  425 (527)
                      ...|+..++||+|+||+||+|+. .+|+.||+|+++....                                .++     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            34577778899999999999985 5789999999854211                                112     


Q ss_pred             -eeEEEEEeccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          426 -FRALVLEYTTNGSLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       426 -~~~lv~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                       ..++|+||+.. ||.+++....   ..++......++.|+++|++|||   +++|+||||||+|||++++|.+|++|||
T Consensus        90 ~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFG  165 (323)
T KOG0594|consen   90 GKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADFG  165 (323)
T ss_pred             ceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeeccc
Confidence             55689999975 9999998654   35676778889999999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|+.+.-...  +.+..++|.||.||
T Consensus       166 lAra~~ip~~--~yt~evvTlWYRaP  189 (323)
T KOG0594|consen  166 LARAFSIPMR--TYTPEVVTLWYRAP  189 (323)
T ss_pred             hHHHhcCCcc--cccccEEEeeccCH
Confidence            9997652222  23446789999998

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.5e-24  Score=229.65  Aligned_cols=144  Identities=28%  Similarity=0.456  Sum_probs=121.9

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEe--------------------------------eccCccc
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFH--------------------------------FSCSNED  425 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~--------------------------------~~~~~~~  425 (527)
                      ++....++|++.++||+|+||.|..++++ +++.||+|++.                                ++..++.
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~  148 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDER  148 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc
Confidence            34445678999999999999999999974 68899999763                                2345778


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +.|+||||++||||-.++.+.+ .++..-+..|+.+|+.||.-+|   +.|.|||||||+|||+|..|++|++|||-+-.
T Consensus       149 ~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClk  224 (1317)
T KOG0612|consen  149 YLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLK  224 (1317)
T ss_pred             ceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHh
Confidence            8999999999999999998877 5666667778899999999999   99999999999999999999999999999877


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.... .......+|||.|++|
T Consensus       225 m~~dG-~V~s~~aVGTPDYISP  245 (1317)
T KOG0612|consen  225 MDADG-TVRSSVAVGTPDYISP  245 (1317)
T ss_pred             cCCCC-cEEeccccCCCCccCH
Confidence            75433 2333456899999998

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-23  Score=201.63  Aligned_cols=140  Identities=36%  Similarity=0.540  Sum_probs=115.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccc-eeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNED-FRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~-~~~lv~e  432 (527)
                      ..+...+.||+|+||.||+|... +|..+|||.+...                              ...++ ..++.||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            34667799999999999999864 5899999986542                              01122 5789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCC-C
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGE-D  510 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~-~  510 (527)
                      |+++|+|.+++.+.+..++......+..||++||+|||   +++||||||||+|||++. ++.+||+|||+|+..... .
T Consensus        97 y~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~  173 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGT  173 (313)
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCccccccccccc
Confidence            99999999999887657888899999999999999999   999999999999999999 799999999999877531 1


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........||+.||||
T Consensus       174 ~~~~~~~~~Gtp~~maP  190 (313)
T KOG0198|consen  174 KSDSELSVQGTPNYMAP  190 (313)
T ss_pred             cccccccccCCccccCc
Confidence            11122346799999999

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.6e-23  Score=210.11  Aligned_cols=140  Identities=31%  Similarity=0.424  Sum_probs=116.5

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----c------------------------------Cccc
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----C------------------------------SNED  425 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----~------------------------------~~~~  425 (527)
                      ...+.|.+.+.||+|+||.||.|+. .+++.||+|++...     .                              ..+.
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3467899999999999999999975 57899999975432     1                              1123


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAK  504 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~  504 (527)
                      ..++|||||.||+|.+++.. ...+....+..++.|++.|++|+|   +++|+||||||+|||+|.+ +++||+|||++.
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~  169 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDFGLSA  169 (370)
T ss_pred             eEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEecccccc
Confidence            45799999999999999988 556777888999999999999999   9999999999999999998 999999999999


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....+.  .....+||+.|+||
T Consensus       170 ~~~~~~~--~l~t~cGsp~Y~aP  190 (370)
T KOG0583|consen  170 ISPGEDG--LLKTFCGSPAYAAP  190 (370)
T ss_pred             ccCCCCC--cccCCCCCcccCCH
Confidence            8741211  12346899999998

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=6e-24  Score=210.95  Aligned_cols=138  Identities=28%  Similarity=0.485  Sum_probs=117.5

Q ss_pred             CccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccCC
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      .++..+.||+|.||+||.|++.....||+|.+..                            .|..++..+||||||+.|
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccC
Confidence            3567799999999999999999888999998643                            355556689999999999


Q ss_pred             cHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          438 SLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       438 ~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      +|.++|+. .+..+...+.+.++.|||+|++||+   ++++|||||.++|||++++..+||+|||+||...++ .+....
T Consensus       287 sLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~-~Y~~~~  362 (468)
T KOG0197|consen  287 SLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDD-EYTASE  362 (468)
T ss_pred             cHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCceEEEcccccccccCCC-ceeecC
Confidence            99999987 4567888899999999999999999   999999999999999999999999999999965433 333334


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      .....+.|.||
T Consensus       363 ~~kfPIkWtAP  373 (468)
T KOG0197|consen  363 GGKFPIKWTAP  373 (468)
T ss_pred             CCCCCceecCH
Confidence            44557789998

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=2.6e-23  Score=222.80  Aligned_cols=262  Identities=24%  Similarity=0.294  Sum_probs=205.3

Q ss_pred             ccc-CCCceeecCchhhhcCCCCCEEEccccccccc--cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccC
Q 035895           25 TID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGR--LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN  101 (527)
Q Consensus        25 ~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~--~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  101 (527)
                      .+| +.|.++.+++ .+.  ++|+.|++++|.+...  .+..|+.|+|++|+|+.++..         .++|+.|++++|
T Consensus       205 ~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---------p~sL~~L~Ls~N  272 (788)
T PRK15387        205 VLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---------PPGLLELSIFSN  272 (788)
T ss_pred             EEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---------ccccceeeccCC
Confidence            344 6778886554 443  4799999999998742  235789999999999987532         357999999999


Q ss_pred             CCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccC
Q 035895          102 PLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP  181 (527)
Q Consensus       102 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  181 (527)
                      .++. +|..    ..+|+.|++++|+++.. |.   ..++|+.|+|++|++++. |..   ..+|+.|++++|++++ +|
T Consensus       273 ~L~~-Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        273 PLTH-LPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             chhh-hhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cc
Confidence            9986 3443    34799999999999854 43   247899999999999864 332   3468889999999984 55


Q ss_pred             hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCC
Q 035895          182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL  261 (527)
Q Consensus       182 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L  261 (527)
                      ..   ..+|+.|+|++|+|++ +|..   ..+|+.|++++|+|+.+|...   .+|+.|++++|.+.+ +|..   .++|
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             cc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccc---cccceEEecCCcccC-CCCc---ccCC
Confidence            42   2579999999999996 4543   357888999999999998643   578999999999885 5543   3579


Q ss_pred             CEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhc
Q 035895          262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL  331 (527)
Q Consensus       262 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~  331 (527)
                      +.|++++|++++ +|..+   .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++..+..+..+.
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            999999999985 66543   46889999999998 6899999999999999999999998887775543

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.90  E-value=7.9e-24  Score=209.25  Aligned_cols=136  Identities=35%  Similarity=0.465  Sum_probs=117.2

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|.+.+.||+|+||.||||+.+ +.+.||+|.+...                               +......++|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            56888899999999999999875 6789999987431                               233456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ||.| +|..++... +.++..+...|+.+++.||.|||   +.+|+|||+||.|||++..|.+|+||||+||.+...  .
T Consensus        82 ~a~g-~L~~il~~d-~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~--t  154 (808)
T KOG0597|consen   82 YAVG-DLFTILEQD-GKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN--T  154 (808)
T ss_pred             hhhh-hHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhcccC--c
Confidence            9997 999999754 46888899999999999999999   999999999999999999999999999999988653  3


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ..-+.+.||+.||||
T Consensus       155 ~vltsikGtPlYmAP  169 (808)
T KOG0597|consen  155 SVLTSIKGTPLYMAP  169 (808)
T ss_pred             eeeeeccCcccccCH
Confidence            345668899999998

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-23  Score=203.59  Aligned_cols=141  Identities=30%  Similarity=0.410  Sum_probs=116.9

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec--------------------------cC------ccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------CS------NEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~--------------------------~~------~~~~~~lv~  431 (527)
                      .+..+..++||+|.||.||||.+.+ +.||||++...                          +.      ..-.+.+|+
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt  287 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVT  287 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhccC-ceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEe
Confidence            4556677899999999999999975 89999997421                          11      122567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc------CCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF------GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~------~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||.+.|+|.++|..  ...+|....+|+..+++||+|||.      .++++|+|||||+.|||+..|+++.|+|||+|..
T Consensus       288 ~fh~kGsL~dyL~~--ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~  365 (534)
T KOG3653|consen  288 EFHPKGSLCDYLKA--NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALR  365 (534)
T ss_pred             eeccCCcHHHHHHh--ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEE
Confidence            99999999999965  468999999999999999999994      4788999999999999999999999999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +............+||.+||||
T Consensus       366 ~~p~~~~~d~~~qVGT~RYMAP  387 (534)
T KOG3653|consen  366 LEPGKPQGDTHGQVGTRRYMAP  387 (534)
T ss_pred             ecCCCCCcchhhhhhhhhhcCH
Confidence            7644332222346799999998

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.89  E-value=8.3e-23  Score=204.91  Aligned_cols=139  Identities=26%  Similarity=0.432  Sum_probs=115.8

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46899999999999999999864 678999998742                                122455678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||++||+|.+++...+..+++..+..++.|++.||+|+|   +++|+||||||+||+++.++.+||+|||+++.......
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence            999999999999875556788888889999999999999   99999999999999999999999999999987643322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       .......||++||||
T Consensus       158 -~~~~~~~gt~~y~aP  172 (331)
T cd05624         158 -VQSSVAVGTPDYISP  172 (331)
T ss_pred             -eeeccccCCcccCCH
Confidence             122234588999998

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.89  E-value=1e-22  Score=207.01  Aligned_cols=119  Identities=28%  Similarity=0.452  Sum_probs=103.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|+..+.||+|+||+||+|+. .+++.||||++...                                +..++..++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            4689999999999999999985 46899999997521                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |||+||+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+|||++.++.+||+|||+++.+.
T Consensus        81 E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMKK-DTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            999999999998754 35788888999999999999999   9999999999999999999999999999998653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.88  E-value=8.2e-23  Score=207.75  Aligned_cols=141  Identities=25%  Similarity=0.410  Sum_probs=115.9

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCcccee
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFR  427 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~  427 (527)
                      ....++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++..
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            344578999999999999999999865 578999998742                                12234567


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++...  .++......++.|++.||+|||   +++|+||||||+|||+++++.+||+|||+|+...
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~  193 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD  193 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceecc
Confidence            8999999999999998653  4677788889999999999999   9999999999999999999999999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .... .......||++||||
T Consensus       194 ~~~~-~~~~~~~gt~~Y~aP  212 (370)
T cd05621         194 ETGM-VRCDTAVGTPDYISP  212 (370)
T ss_pred             cCCc-eecccCCCCcccCCH
Confidence            3221 112235689999998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=1.6e-22  Score=202.88  Aligned_cols=139  Identities=27%  Similarity=0.442  Sum_probs=115.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||+||+|+. .+++.||+|++..                                .+..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            4689999999999999999986 4689999999742                                122345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++...+..++...+..++.||+.||+|||   +++|+||||||+||+++.++.+||+|||+++.+.....
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence            999999999999765556788888899999999999999   99999999999999999999999999999976643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       .......||+.||||
T Consensus       158 -~~~~~~~gt~~y~aP  172 (331)
T cd05597         158 -VQSNVAVGTPDYISP  172 (331)
T ss_pred             -ccccceeccccccCH
Confidence             112234588999998

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.7e-23  Score=182.34  Aligned_cols=138  Identities=28%  Similarity=0.426  Sum_probs=115.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      +.++|++.+.||+|.||.||.|+. +++..||+|++..                                ..-++...|+
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            357799999999999999999996 4678999999732                                1123456789


Q ss_pred             EEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ++||.++|+++..|+... ..++......++.|+|.|+.|+|   .++||||||||+|+|++.++..|++|||.+..-+.
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~  176 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  176 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecCC
Confidence            999999999999998543 34677777889999999999999   99999999999999999999999999999876532


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      .    .....+||+.|.+|
T Consensus       177 ~----kR~tlcgt~dyl~p  191 (281)
T KOG0580|consen  177 N----KRKTLCGTLDYLPP  191 (281)
T ss_pred             C----CceeeecccccCCH
Confidence            2    22346799999988

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=6.7e-23  Score=199.25  Aligned_cols=142  Identities=31%  Similarity=0.444  Sum_probs=112.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c--------
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C--------  421 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~--------  421 (527)
                      .....|++.+.||+|+||.|-+|+. .+++.||||++...                               |        
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            3457799999999999999999985 57899999997420                               1        


Q ss_pred             ------CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          422 ------SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       422 ------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                            ...+..|+|+|||..|.+...= ..+..++..++.+|+.++..||+|||   .++||||||||+|+|++++|++
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p-~d~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCP-PDKPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCC-CCcccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcE
Confidence                  1235678999999999775321 11223788899999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCC---ccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQ---SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~---~~~~~~~~~t~~y~aP  527 (527)
                      ||+|||.+-.......   ...-..++||+.||||
T Consensus       250 KIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~AP  284 (576)
T KOG0585|consen  250 KISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAP  284 (576)
T ss_pred             EeeccceeeecccCCccccHHHHhhcCCCccccch
Confidence            9999999987632211   1111236899999998

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.88  E-value=2.2e-22  Score=201.88  Aligned_cols=139  Identities=27%  Similarity=0.420  Sum_probs=115.2

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.+ +++.||+|++..                                .+..++..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            46889999999999999999865 578899998742                                122345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++...+..+++.....++.|++.|++|+|   +++|+||||||+||+++.++.+||+|||+++.+.....
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~  157 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  157 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecccCCc
Confidence            999999999999875556788888889999999999999   99999999999999999999999999999976543221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       .......||+.||||
T Consensus       158 -~~~~~~~gt~~y~aP  172 (332)
T cd05623         158 -VQSSVAVGTPDYISP  172 (332)
T ss_pred             -ceecccccCccccCH
Confidence             122234689999998

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.1e-23  Score=196.49  Aligned_cols=134  Identities=37%  Similarity=0.529  Sum_probs=105.1

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEee-----------------------------ccCc-cceeEEEEEecc
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-----------------------------SCSN-EDFRALVLEYTT  435 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-----------------------------~~~~-~~~~~lv~ey~~  435 (527)
                      |+..+++|.|+||.||+|... +++.||||++-.                             .... +-+..+||||||
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP  105 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP  105 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhch
Confidence            667799999999999999964 568999998511                             1111 224458999999


Q ss_pred             CCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCCC
Q 035895          436 NGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       436 ~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      . +|+++++..   +..++.....-+..|+.+|++|||   +.+||||||||+|+|+|. .|.+||||||-|+.+..+..
T Consensus       106 ~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep  181 (364)
T KOG0658|consen  106 E-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP  181 (364)
T ss_pred             H-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCC
Confidence            7 999988742   445666666778999999999999   899999999999999995 59999999999998865543


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ..+   ..-|..|+||
T Consensus       182 niS---YicSRyYRaP  194 (364)
T KOG0658|consen  182 NIS---YICSRYYRAP  194 (364)
T ss_pred             cee---EEEeccccCH
Confidence            322   2235678988

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.88  E-value=2.5e-22  Score=201.48  Aligned_cols=139  Identities=30%  Similarity=0.441  Sum_probs=116.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||+|++...                                +..++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4688999999999999999986 46899999987531                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++......+++.....++.|++.||+|+|   +.+|+||||||+||+++.++.+||+|||+++.+.....
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  157 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM  157 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCc
Confidence            999999999999876556888888889999999999999   99999999999999999999999999999987653322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      . ......+|+.|+||
T Consensus       158 ~-~~~~~~gt~~y~aP  172 (330)
T cd05601         158 V-NSKLPVGTPDYIAP  172 (330)
T ss_pred             e-eeecccCCccccCH
Confidence            1 22234578899998

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.88  E-value=1.5e-22  Score=203.69  Aligned_cols=141  Identities=25%  Similarity=0.428  Sum_probs=109.4

Q ss_pred             cCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------cC-ccc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------CS-NED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~~-~~~  425 (527)
                      .++|++.+.||+|+||.||+|+.      .+++.||||++...                               +. ..+
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            46789999999999999999973      23568999987421                               11 123


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC----------------------------------------------------------
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN----------------------------------------------------------  447 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~----------------------------------------------------------  447 (527)
                      ..++||||+++|+|.+++....                                                          
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD  165 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence            4678999999999999986421                                                          


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecccccccc
Q 035895          448 ---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY  524 (527)
Q Consensus       448 ---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y  524 (527)
                         ..+++.+...++.|+++||+|||   +++|+||||||+||++++++.+|++|||+++...............++..|
T Consensus       166 ~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y  242 (338)
T cd05102         166 LWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKW  242 (338)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccc
Confidence               23567778889999999999999   999999999999999999999999999999876432222112223356789


Q ss_pred             ccC
Q 035895          525 MAP  527 (527)
Q Consensus       525 ~aP  527 (527)
                      |||
T Consensus       243 ~aP  245 (338)
T cd05102         243 MAP  245 (338)
T ss_pred             cCc
Confidence            998

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.88  E-value=4.2e-22  Score=195.50  Aligned_cols=136  Identities=29%  Similarity=0.450  Sum_probs=112.4

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||.||+|.. .+|+.||+|.+..                                .+...+..++|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            477889999999999999986 5789999998642                                1223456789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++.... ..+++..+..++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.......
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET  157 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe
Confidence            999999998876433 35788889999999999999999   99999999999999999999999999999987643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....||.+||||
T Consensus       158 ---~~~~~g~~~y~aP  170 (285)
T cd05631         158 ---VRGRVGTVGYMAP  170 (285)
T ss_pred             ---ecCCCCCCCccCH
Confidence               1234688999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.87  E-value=3.2e-22  Score=203.57  Aligned_cols=143  Identities=26%  Similarity=0.419  Sum_probs=117.2

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccc
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNED  425 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~  425 (527)
                      ++....++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  116 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            44555688999999999999999999865 688999998742                                112345


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+++|+|.+++...  .++......++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+.
T Consensus       117 ~~~lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~  191 (371)
T cd05622         117 YLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  191 (371)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeE
Confidence            678999999999999998653  4677778889999999999999   99999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...... .......||+.||||
T Consensus       192 ~~~~~~-~~~~~~~gt~~y~aP  212 (371)
T cd05622         192 MNKEGM-VRCDTAVGTPDYISP  212 (371)
T ss_pred             cCcCCc-ccccCcccCccccCH
Confidence            643321 122245689999998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.87  E-value=3.6e-22  Score=199.60  Aligned_cols=136  Identities=27%  Similarity=0.348  Sum_probs=111.8

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~  431 (527)
                      +|++.+.||+|+||.||+|+.. +++.||||++...                                 +...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4788999999999999999864 5789999987421                                 12334567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+.+... ..+++.++..++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.......
T Consensus        81 E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~  156 (323)
T cd05616          81 EYVNGGDLMYQIQQV-GRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGV  156 (323)
T ss_pred             cCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCC
Confidence            999999999988654 35788889999999999999999   99999999999999999999999999999986432211


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||+.||||
T Consensus       157 --~~~~~~gt~~y~aP  170 (323)
T cd05616         157 --TTKTFCGTPDYIAP  170 (323)
T ss_pred             --ccccCCCChhhcCH
Confidence              12235688999998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.87  E-value=4.3e-22  Score=199.13  Aligned_cols=136  Identities=27%  Similarity=0.340  Sum_probs=111.3

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~  431 (527)
                      +|++.+.||+|+||.||+|+.. +++.||||++...                                 +...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4888999999999999999864 5789999987421                                 12335678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.......
T Consensus        81 E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~  156 (324)
T cd05587          81 EYVNGGDLMYHIQQV-GKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK  156 (324)
T ss_pred             cCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC
Confidence            999999999988654 35678888999999999999999   99999999999999999999999999999875322111


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||..|+||
T Consensus       157 --~~~~~~gt~~y~aP  170 (324)
T cd05587         157 --TTRTFCGTPDYIAP  170 (324)
T ss_pred             --ceeeecCCccccCh
Confidence              12234688999998

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.87  E-value=5.5e-23  Score=198.63  Aligned_cols=139  Identities=29%  Similarity=0.471  Sum_probs=119.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEe--------------------------------eccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFH--------------------------------FSCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~--------------------------------~~~~~~~~~~l  429 (527)
                      ....|..-++||+||||.||-++. .+|+.+|+|.+.                                .+....+..++
T Consensus       183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL  262 (591)
T ss_pred             cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence            345688889999999999999886 468888887642                                13456778899


Q ss_pred             EEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||..|.||||.-+|...+ ..++..+...+|.+|+.||++||   ..+||.||+||+|||+|+.|+++|+|.|+|..+..
T Consensus       263 VLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             EEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            999999999999988765 46888899999999999999999   99999999999999999999999999999998875


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .++.+||.|||||
T Consensus       340 g~~---~~~rvGT~GYMAP  355 (591)
T KOG0986|consen  340 GKP---IRGRVGTVGYMAP  355 (591)
T ss_pred             CCc---cccccCcccccCH
Confidence            432   2345899999999

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.87  E-value=2.5e-22  Score=204.44  Aligned_cols=140  Identities=26%  Similarity=0.423  Sum_probs=114.5

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRA  428 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~  428 (527)
                      ...++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++..+
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            34567999999999999999999864 688999998742                                122345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++||+|.+++...  .++......++.|++.||+|||   +++|+||||||+|||+++++.+||+|||+++....
T Consensus       120 lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~  194 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNY--DIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDA  194 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeeccC
Confidence            999999999999998653  4566677888999999999999   99999999999999999999999999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ... .......||+.||||
T Consensus       195 ~~~-~~~~~~~gt~~y~aP  212 (370)
T cd05596         195 NGM-VRCDTAVGTPDYISP  212 (370)
T ss_pred             CCc-ccCCCCCCCcCeECH
Confidence            221 112235689999998

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=3.6e-22  Score=203.12  Aligned_cols=118  Identities=31%  Similarity=0.501  Sum_probs=103.3

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...                                +...+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            46899999999999999999864 6899999997521                                22345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||+++|+|.+++...+ .++...+..++.|++.||+|+|   +++|+||||||+|||++.++.+|++|||+++.+
T Consensus        81 E~~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  151 (364)
T cd05599          81 EYLPGGDMMTLLMKKD-TFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGL  151 (364)
T ss_pred             CCCCCcHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceec
Confidence            9999999999987643 5788888899999999999999   999999999999999999999999999998764

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.87  E-value=5e-22  Score=199.41  Aligned_cols=137  Identities=29%  Similarity=0.421  Sum_probs=111.9

Q ss_pred             CccccceeccCCceEEEEEEc----cCCcEEEEEEEeec----------------------------------cCcccee
Q 035895          386 GFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      +|++.+.||+|+||.||+|+.    .+++.||+|++...                                  ...++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            488899999999999999975    36789999987421                                  1223456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++... ..+++.+...++.|++.||+|||   +++|+||||||+|||++.++.+||+|||+++.+.
T Consensus        81 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQR-DNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence            7999999999999998654 35788888899999999999999   9999999999999999999999999999998654


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..... ......||+.||||
T Consensus       157 ~~~~~-~~~~~~gt~~y~aP  175 (332)
T cd05614         157 SEEKE-RTYSFCGTIEYMAP  175 (332)
T ss_pred             ccCCC-ccccccCCccccCH
Confidence            32221 12235689999998

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.5e-24  Score=206.14  Aligned_cols=279  Identities=20%  Similarity=0.256  Sum_probs=191.1

Q ss_pred             cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCC
Q 035895           60 LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL  139 (527)
Q Consensus        60 ~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  139 (527)
                      +|....+++|..|.|+.+++.     +|+.+++|+.||||+|.|+.+-|+.|.++..-++.++.++|+|+.+..+.|++|
T Consensus        65 LP~~tveirLdqN~I~~iP~~-----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPG-----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             CCCcceEEEeccCCcccCChh-----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            444455677777777776664     567777777777777777777777776665433334444477776666677777


Q ss_pred             cCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccC------------CCCCCcc
Q 035895          140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL------------SGSIPTC  207 (527)
Q Consensus       140 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l------------~~~~p~~  207 (527)
                      ..|+-|.+.-|++.-+....|..+++|..|.+.+|.+.......|..+..++.+.+..|.+            ....|..
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            7777777777777666666667777777777777766644344666666666666666652            1222333


Q ss_pred             ccCCccCceeeCCCCCCCCCchhhh--CCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCCCCCCChhhhhcCCC
Q 035895          208 FGNLTALRNLHLDSNELTSIPSILW--NLKDILYLDFWSNLFVGPLP-SKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS  284 (527)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~~lp~~~~--~l~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  284 (527)
                      ++......-..+.++++..++..-+  .+.++..--.+.....+..| ..|..|++|++|+|++|+++++-+.+|.++..
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence            4444444444444455444433211  11122111111222222333 45889999999999999999999999999999


Q ss_pred             CCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          285 LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       285 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +++|.|..|+|.......|.++..|+.|+|.+|+|+...|..|..+.+|..|++..+++
T Consensus       300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            99999999999988888999999999999999999999999999999999998776665

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.87  E-value=5.3e-22  Score=198.35  Aligned_cols=136  Identities=27%  Similarity=0.346  Sum_probs=111.7

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~  431 (527)
                      +|+..+.||+|+||.||+|+. .+|+.||+|++...                                 +..++..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            477889999999999999986 46899999987421                                 12334678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++... ..+++.++..++.|++.|++|||   +++|+||||||+||++++++.+||+|||+++.......
T Consensus        81 Ey~~~g~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~  156 (323)
T cd05615          81 EYVNGGDLMYHIQQV-GKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV  156 (323)
T ss_pred             cCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc
Confidence            999999999988654 35788899999999999999999   99999999999999999999999999999986432211


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||+.||||
T Consensus       157 --~~~~~~gt~~y~aP  170 (323)
T cd05615         157 --TTRTFCGTPDYIAP  170 (323)
T ss_pred             --cccCccCCccccCH
Confidence              12234578899998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.87  E-value=6e-22  Score=202.59  Aligned_cols=117  Identities=26%  Similarity=0.398  Sum_probs=100.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||+||+|+. .+++.||||++..                                .+...+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            588899999999999999985 5688999998742                                1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      |++||+|.+++...+ .+++.....++.|++.||+|||   +.+|+||||||+||+++.++++|++|||+++.+
T Consensus        82 ~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          82 YIPGGDMMSLLIRME-VFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             cCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            999999999987643 4677778889999999999999   999999999999999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.87  E-value=6.4e-22  Score=200.88  Aligned_cols=118  Identities=30%  Similarity=0.467  Sum_probs=102.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|+..+.||+|+||.||+|+.. +++.||||++..                                .+..++..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46889999999999999999864 689999998742                                112345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||++||+|.+++... ..++......++.|++.||+|+|   +++|+||||||+||+++.++.+|++|||+++.+
T Consensus        81 E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627          81 EFLPGGDMMTLLMKK-DTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             eCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            999999999998754 35778888889999999999999   999999999999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.87  E-value=1.4e-22  Score=193.09  Aligned_cols=135  Identities=27%  Similarity=0.430  Sum_probs=114.3

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~e  432 (527)
                      .|++.+.||+|.||.|-+|.. ..|+.||||.++..                                ....+...||||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            478889999999999999985 67999999987431                                234456779999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |..+|+|++++...+ .++..++..++.||..|+.|+|   +++++|||||.+|||+|.++.+||+|||++-.+.+... 
T Consensus       134 YaS~GeLYDYiSer~-~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kf-  208 (668)
T KOG0611|consen  134 YASGGELYDYISERG-SLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKF-  208 (668)
T ss_pred             ecCCccHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhccccH-
Confidence            999999999997654 5788888899999999999999   99999999999999999999999999999988754432 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       . +.++|++-|.+|
T Consensus       209 -L-qTFCGSPLYASP  221 (668)
T KOG0611|consen  209 -L-QTFCGSPLYASP  221 (668)
T ss_pred             -H-HHhcCCcccCCc
Confidence             2 236788888776

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=6.2e-22  Score=198.83  Aligned_cols=134  Identities=28%  Similarity=0.464  Sum_probs=113.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...                                +...+..++||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            36899999999999999999975 5899999987521                                22345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++...+ .+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++....   
T Consensus        81 e~~~g~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~---  153 (333)
T cd05600          81 EYVPGGDFRTLLNNLG-VLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT---  153 (333)
T ss_pred             eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCccccc---
Confidence            9999999999997543 5678888899999999999999   99999999999999999999999999999986543   


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||+.|+||
T Consensus       154 --~~~~~~gt~~y~aP  167 (333)
T cd05600         154 --YANSVVGSPDYMAP  167 (333)
T ss_pred             --ccCCcccCccccCh
Confidence              12234688899998

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.87  E-value=6.4e-22  Score=202.16  Aligned_cols=116  Identities=28%  Similarity=0.427  Sum_probs=100.5

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      +|++.+.||+|+||.||+|+. .+++.||||++..                                .+..++..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            689999999999999999985 4689999998742                                1123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||++|+|.+++...+ .++......++.||+.||+|||   +++|+||||||+||+++.++.+||+|||+|+.
T Consensus        82 ~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          82 YIPGGDMMSLLIRLG-IFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             CCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence            999999999997643 4677777888999999999999   99999999999999999999999999999853

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=6.9e-22  Score=199.90  Aligned_cols=120  Identities=33%  Similarity=0.528  Sum_probs=104.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...                                +..++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            46889999999999999999865 6899999997521                                22345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|.+++... ..++......++.|++.||+|||   +++|+||||||+||+++.++.+|++|||+++....
T Consensus        81 e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          81 EYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             cCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            999999999999765 46788888899999999999999   89999999999999999999999999999987643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=4.2e-23  Score=204.86  Aligned_cols=131  Identities=35%  Similarity=0.470  Sum_probs=111.0

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c-CccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C-SNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~-~~~~~~~lv~ey  433 (527)
                      |...+.||.|+||.||.|+. ++.+.||||++.+.                               | -.+...++||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            66678999999999999985 56789999997532                               1 123345689999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |-| +-.+++...+..+...+...|..+.+.||+|||   +++.||||||+.|||+.+.|.||++|||-|....+.    
T Consensus       108 ClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA----  179 (948)
T KOG0577|consen  108 CLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA----  179 (948)
T ss_pred             Hhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCch----
Confidence            975 888888777777887788889999999999999   999999999999999999999999999999887532    


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ..++||++||||
T Consensus       180 --nsFvGTPywMAP  191 (948)
T KOG0577|consen  180 --NSFVGTPYWMAP  191 (948)
T ss_pred             --hcccCCccccch
Confidence              357899999999

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=8.4e-22  Score=201.31  Aligned_cols=117  Identities=28%  Similarity=0.434  Sum_probs=101.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||||++..                                .+...+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4688999999999999999985 5789999998742                                112345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||+++|+|.+++... ..++......++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+|+.
T Consensus        81 E~~~gg~L~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~  150 (377)
T cd05629          81 EFLPGGDLMTMLIKY-DTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTG  150 (377)
T ss_pred             eCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeecccccc
Confidence            999999999998754 35677778889999999999999   99999999999999999999999999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-22  Score=171.66  Aligned_cols=136  Identities=28%  Similarity=0.418  Sum_probs=113.8

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccCc-------------------------------cceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCSN-------------------------------EDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~~-------------------------------~~~~~lv~ey  433 (527)
                      .|+..++||||.||+||+|+. .+++.||+|.++....+                               +....+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            466778999999999999985 57899999998753222                               2234589999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |.. +|.++.....+.++......++.|+.+|+.++|   ++.+.|||+||+|.+++.+|+.|++|||+||.+.-.-.  
T Consensus        83 cdq-dlkkyfdslng~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkpqnllin~ngelkladfglarafgipvr--  156 (292)
T KOG0662|consen   83 CDQ-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR--  156 (292)
T ss_pred             hhH-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCcceEEeccCCcEEecccchhhhcCCceE--
Confidence            975 999999888888999888999999999999999   99999999999999999999999999999998764322  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      .....+.|+||.+|
T Consensus       157 cysaevvtlwyrpp  170 (292)
T KOG0662|consen  157 CYSAEVVTLWYRPP  170 (292)
T ss_pred             eeeceeeeeeccCc
Confidence            22345678999887

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=9.4e-22  Score=193.62  Aligned_cols=134  Identities=33%  Similarity=0.465  Sum_probs=112.6

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||+|++...                                +.+++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            46889999999999999999865 6899999987421                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++...+ .+++.....++.|++.||+|+|   +++|+||||||+||++++++.+|++|||+++...... 
T Consensus        81 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~-  155 (291)
T cd05612          81 EYVPGGELFSYLRNSG-RFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT-  155 (291)
T ss_pred             eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCc-
Confidence            9999999999987643 5678888899999999999999   9999999999999999999999999999998764321 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                          ....||+.|+||
T Consensus       156 ----~~~~gt~~y~aP  167 (291)
T cd05612         156 ----WTLCGTPEYLAP  167 (291)
T ss_pred             ----ccccCChhhcCH
Confidence                124578889998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.87  E-value=1e-21  Score=196.41  Aligned_cols=131  Identities=29%  Similarity=0.420  Sum_probs=107.6

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|+. .+|+.||||++...                                +...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4799999999999986 57899999987521                                22345678999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceec
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                      +|.+++... ..+++.+...++.||+.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        81 ~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~  154 (323)
T cd05571          81 ELFFHLSRE-RVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKT  154 (323)
T ss_pred             cHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC--cccc
Confidence            999988754 35788888899999999999999   99999999999999999999999999999986432211  1223


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..||+.||||
T Consensus       155 ~~gt~~y~aP  164 (323)
T cd05571         155 FCGTPEYLAP  164 (323)
T ss_pred             eecCccccCh
Confidence            4689999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.87  E-value=9.2e-22  Score=201.37  Aligned_cols=116  Identities=28%  Similarity=0.415  Sum_probs=100.1

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||+||+|+. .+++.||+|++..                                .+..++..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            488899999999999999986 5688999998742                                1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||++|+|.+++...+ .++......++.|++.||+|+|   +++|+||||||+|||++.++.+||+|||+|+.
T Consensus        82 ~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          82 YIPGGDMMSLLIRMG-IFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             CCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            999999999987543 4677777889999999999999   99999999999999999999999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-21  Score=189.61  Aligned_cols=142  Identities=27%  Similarity=0.393  Sum_probs=116.8

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVL  431 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~  431 (527)
                      ..++|++..+||.|..++||+|+. +.++.||||++...                              ...+...++||
T Consensus        24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVm  103 (516)
T KOG0582|consen   24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVM  103 (516)
T ss_pred             CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEee
Confidence            457799999999999999999984 67899999997531                              12244567999


Q ss_pred             EeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      .||.+|++.+++... ...++......|..+++.||.|||   .+|.||||||+.|||++++|.||++|||++..+....
T Consensus       104 pfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G  180 (516)
T KOG0582|consen  104 PFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG  180 (516)
T ss_pred             hhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccC
Confidence            999999999998753 344788888889999999999999   9999999999999999999999999999987765432


Q ss_pred             Cc-cce-eccccccccccC
Q 035895          511 QS-MTQ-TQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~-~~~-~~~~~t~~y~aP  527 (527)
                      .. ... ...+||++||||
T Consensus       181 ~R~~~rf~tfvgtp~wmAP  199 (516)
T KOG0582|consen  181 DRQVTRFNTFVGTPCWMAP  199 (516)
T ss_pred             ceeeEeeccccCcccccCh
Confidence            11 111 346799999999

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.86  E-value=9.9e-22  Score=197.56  Aligned_cols=135  Identities=30%  Similarity=0.404  Sum_probs=112.5

Q ss_pred             cCCccccceeccCCceEEEEEEccC--CcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD--GMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~--~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|..+.  +..||+|++..                                .+..++..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            4579999999999999999998543  36899998742                                1223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...+ .+++..+..++.|++.||+|||   +++|+||||||+|||++.++.+|++|||+++.....
T Consensus       109 v~Ey~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~  184 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK-RFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR  184 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC
Confidence            999999999999987543 5788888899999999999999   999999999999999999999999999999876432


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .     ....||+.||||
T Consensus       185 ~-----~~~~gt~~y~aP  197 (340)
T PTZ00426        185 T-----YTLCGTPEYIAP  197 (340)
T ss_pred             c-----ceecCChhhcCH
Confidence            1     234688899998

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=196.51  Aligned_cols=135  Identities=32%  Similarity=0.427  Sum_probs=113.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++..++|
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            467999999999999999999875 689999998742                                12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++...+ .++......++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++......
T Consensus        97 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263         97 LEFVVGGELFTHLRKAG-RFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             EcCCCCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc
Confidence            99999999999987643 4677778889999999999999   9999999999999999999999999999998764321


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                           ....||+.||||
T Consensus       173 -----~~~~gt~~y~aP  184 (329)
T PTZ00263        173 -----FTLCGTPEYLAP  184 (329)
T ss_pred             -----ceecCChhhcCH
Confidence                 124578899998

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.86  E-value=1.3e-21  Score=193.92  Aligned_cols=140  Identities=26%  Similarity=0.446  Sum_probs=109.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-----------------CCcEEEEEEEeec---------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-----------------DGMEFAIKVFHFS---------------------------  420 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-----------------~~~~vavK~~~~~---------------------------  420 (527)
                      ++|++.+.||+|+||.||+|..+                 ++..||+|++...                           
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            46888999999999999999753                 2347999987431                           


Q ss_pred             ---cCccceeEEEEEeccCCcHHHHHHhcC------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEe
Q 035895          421 ---CSNEDFRALVLEYTTNGSLEKVLYSSN------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIH  479 (527)
Q Consensus       421 ---~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiH  479 (527)
                         +..++..++||||+++|+|.+++....                  ..+++.....++.|++.|++|||   +.+|+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH  161 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVH  161 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccc
Confidence               123345689999999999999886421                  23567788899999999999999   999999


Q ss_pred             cCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       480 rdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||||+||++++++.+|++|||+++.+.............++..||||
T Consensus       162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (304)
T cd05096         162 RDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAW  209 (304)
T ss_pred             cCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCH
Confidence            999999999999999999999999876433221112223356789988

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.86  E-value=1.5e-21  Score=194.56  Aligned_cols=131  Identities=30%  Similarity=0.428  Sum_probs=107.2

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ++||+|+||.||+|+.. +++.||||+++..                                 +..++..++||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            47999999999999864 5789999987521                                 1123467899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++...+ .++..+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 g~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~--~~~  154 (316)
T cd05592          81 GDLMFHIQSSG-RFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG--KAS  154 (316)
T ss_pred             CcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCC--ccc
Confidence            99999886543 5788888889999999999999   99999999999999999999999999999986532221  222


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..||||
T Consensus       155 ~~~gt~~y~aP  165 (316)
T cd05592         155 TFCGTPDYIAP  165 (316)
T ss_pred             cccCCccccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.4e-21  Score=206.53  Aligned_cols=255  Identities=25%  Similarity=0.292  Sum_probs=201.0

Q ss_pred             CCCCEEEcccccccccc---ccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccE
Q 035895           44 STLKVFDVDNNYVLGRL---SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF  120 (527)
Q Consensus        44 ~~L~~L~Ls~N~~~~~~---~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  120 (527)
                      ..-..|||+.|.+...+   +..++.|++++|+|+.++..         +++|++|++++|+|+.+ |..    ..+|+.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---------p~~Lk~LdLs~N~LtsL-P~l----p~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---------PPELRTLEVSGNQLTSL-PVL----PPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---------CCCCcEEEecCCccCcc-cCc----ccccce
Confidence            44678999999887432   23578999999999986542         47899999999999964 542    357999


Q ss_pred             EEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccC
Q 035895          121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL  200 (527)
Q Consensus       121 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  200 (527)
                      |++++|.++. +|..   ..+|+.|++++|+++.. |.   .+++|+.|++++|++++ +|..   ...|+.|++++|+|
T Consensus       267 L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L  334 (788)
T PRK15387        267 LSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL  334 (788)
T ss_pred             eeccCCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence            9999999984 3433   35788999999999854 43   35789999999999985 4543   24688899999999


Q ss_pred             CCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhh
Q 035895          201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ  280 (527)
Q Consensus       201 ~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  280 (527)
                      ++ +|..   ..+|+.|+|++|+|+.+|...   .+|..|++++|.+.. +|..   ...|+.|++++|++.+ +|..  
T Consensus       335 ~~-LP~l---p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--  400 (788)
T PRK15387        335 TS-LPTL---PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--  400 (788)
T ss_pred             cc-cccc---ccccceEecCCCccCCCCCCC---cccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc--
Confidence            85 4542   257999999999999998743   467788999999875 5653   3578999999999985 5543  


Q ss_pred             cCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                       .++|+.|++++|++++ +|..+   .+|+.|++++|+++. +|..+..+..|..++++.+.+.
T Consensus       401 -~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        401 -PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             -ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCC
Confidence             3679999999999984 66543   468899999999985 6888999999999999988774

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2.8e-22  Score=189.77  Aligned_cols=140  Identities=29%  Similarity=0.357  Sum_probs=113.2

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc------------------------------------Cccc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC------------------------------------SNED  425 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~------------------------------------~~~~  425 (527)
                      ....|...+.||+|+||.|+.|.. ++|+.||||++....                                    ..-.
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            345566678999999999999985 578999999875210                                    1123


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..|+|+|+|+ .||.++++.. ..+.......+..|+.+|+.|+|   +.+|+|||+||.|++++.+...||+|||+||.
T Consensus       100 DvYiV~elMe-tDL~~iik~~-~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c~lKI~DFGLAR~  174 (359)
T KOG0660|consen  100 DVYLVFELME-TDLHQIIKSQ-QDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADCDLKICDFGLARY  174 (359)
T ss_pred             eeEEehhHHh-hHHHHHHHcC-ccccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCCCEEeccccceee
Confidence            5689999995 5999998754 34777778889999999999999   99999999999999999999999999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+......-.|+.+.|.||.||
T Consensus       175 ~~~~~~~~~mTeYVaTRWYRAP  196 (359)
T KOG0660|consen  175 LDKFFEDGFMTEYVATRWYRAP  196 (359)
T ss_pred             ccccCcccchhcceeeeeecCH
Confidence            8643222234667889999998

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.86  E-value=2.7e-21  Score=193.45  Aligned_cols=131  Identities=28%  Similarity=0.420  Sum_probs=106.9

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|+. .+++.||+|++...                                +..++..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4799999999999985 57899999987421                                12345678999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      +|..++... ..+++.+...++.|++.||+|||   + .+|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 ~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH---~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~  154 (325)
T cd05594          81 ELFFHLSRE-RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMK  154 (325)
T ss_pred             cHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--ccc
Confidence            999888654 35788889999999999999999   7 7999999999999999999999999999886432211  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (325)
T cd05594         155 TFCGTPEYLAP  165 (325)
T ss_pred             cccCCcccCCH
Confidence            34588999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.86  E-value=2.1e-21  Score=194.49  Aligned_cols=131  Identities=30%  Similarity=0.428  Sum_probs=107.6

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|+. .+++.||+|++...                                +..++..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4799999999999986 46899999987521                                12345678999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceec
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                      +|..++... ..+++.+...++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.......  ....
T Consensus        81 ~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~  154 (328)
T cd05593          81 ELFFHLSRE-RVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKT  154 (328)
T ss_pred             CHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--cccc
Confidence            999888654 35788888999999999999999   99999999999999999999999999999986432211  1223


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..||+.||||
T Consensus       155 ~~gt~~y~aP  164 (328)
T cd05593         155 FCGTPEYLAP  164 (328)
T ss_pred             ccCCcCccCh
Confidence            4688999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=1.5e-21  Score=205.43  Aligned_cols=143  Identities=29%  Similarity=0.403  Sum_probs=114.6

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------C------------cc-----
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------S------------NE-----  424 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------~------------~~-----  424 (527)
                      ...+.|++.+.||+|+||+||+|+. .+|+.||||++....                   .            ..     
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            3456899999999999999999985 578999999874210                   0            00     


Q ss_pred             ---ceeEEEEEeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          425 ---DFRALVLEYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       425 ---~~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                         ...++||||+++|+|.+++...   ...++......++.|++.||+|+|   +++|+||||||+||+++.++.+||+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEE
Confidence               1256999999999999998643   235778888899999999999999   9999999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.+.............||++||||
T Consensus       186 DFGls~~~~~~~~~~~~~~~~Gt~~Y~aP  214 (496)
T PTZ00283        186 DFGFSKMYAATVSDDVGRTFCGTPYYVAP  214 (496)
T ss_pred             ecccCeeccccccccccccccCCcceeCH
Confidence            99999876432222222335689999998

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.86  E-value=2.1e-21  Score=190.78  Aligned_cols=138  Identities=25%  Similarity=0.440  Sum_probs=112.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|+..+.||+|+||.||+|+.+ +++.||+|++...                              ...++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFE   83 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEe
Confidence            467999999999999999999864 6889999987421                              122345679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ +|.+++...+..+++.....++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++....... 
T Consensus        84 ~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~-  158 (288)
T cd07871          84 YLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK-  158 (288)
T ss_pred             CCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc-
Confidence            9985 999988766666788888999999999999999   99999999999999999999999999999986542221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......+++.||||
T Consensus       159 -~~~~~~~~~~y~aP  172 (288)
T cd07871         159 -TYSNEVVTLWYRPP  172 (288)
T ss_pred             -cccCceecccccCh
Confidence             11234568889998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.86  E-value=2.2e-21  Score=193.85  Aligned_cols=131  Identities=29%  Similarity=0.430  Sum_probs=107.4

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|+. .+|+.||+|++...                                +...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4799999999999986 46899999987421                                12345678999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceec
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                      +|..++... ..+++.....++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        81 ~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~  154 (323)
T cd05595          81 ELFFHLSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKT  154 (323)
T ss_pred             cHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--cccc
Confidence            999888654 35788888999999999999999   99999999999999999999999999999886432211  1223


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..||+.||||
T Consensus       155 ~~gt~~y~aP  164 (323)
T cd05595         155 FCGTPEYLAP  164 (323)
T ss_pred             ccCCcCcCCc
Confidence            4588999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.86  E-value=2.6e-21  Score=191.68  Aligned_cols=138  Identities=27%  Similarity=0.436  Sum_probs=112.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                              +..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            467999999999999999999975 6899999987421                              123446689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++ ++|.+++......++...+..++.|++.||+|+|   +++|+||||||+||++++++.+||+|||+++....... 
T Consensus        84 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-  158 (303)
T cd07869          84 YVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH-  158 (303)
T ss_pred             CCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCc-
Confidence            996 5888887765556788888999999999999999   99999999999999999999999999999986532221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......+|+.||||
T Consensus       159 -~~~~~~~~~~y~aP  172 (303)
T cd07869         159 -TYSNEVVTLWYRPP  172 (303)
T ss_pred             -cCCCCcccCCCCCh
Confidence             12234578889998

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.86  E-value=4.9e-22  Score=196.72  Aligned_cols=139  Identities=27%  Similarity=0.497  Sum_probs=118.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-------------------------------Cccce-eEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-------------------------------SNEDF-RALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-------------------------------~~~~~-~~lv  430 (527)
                      .+.|...+++|+|+||.++.++++ ++..+++|.+....                               ..++. .+||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            467999999999999999999864 57899999985421                               12333 7899


Q ss_pred             EEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          431 LEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+||++++.+...+ ..++..+...++.|++.|+.|||   +..|+|||||+.||++..++.||++|||+|+.+...
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~  159 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPE  159 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCCc
Confidence            99999999999998765 56788889999999999999999   999999999999999999999999999999998755


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  .+...+||+.||.|
T Consensus       160 ~~--~a~tvvGTp~YmcP  175 (426)
T KOG0589|consen  160 DS--LASTVVGTPYYMCP  175 (426)
T ss_pred             hh--hhheecCCCcccCH
Confidence            42  22346799999988

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.86  E-value=2.4e-21  Score=193.42  Aligned_cols=131  Identities=34%  Similarity=0.443  Sum_probs=107.3

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|+.. +++.||||++...                                 +...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            47999999999999864 6889999987421                                 1233457899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++... ..++...+..++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 g~L~~~i~~~-~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~--~~~  154 (320)
T cd05590          81 GDLMFHIQKS-RRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK--TTS  154 (320)
T ss_pred             chHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC--ccc
Confidence            9999988754 35788888999999999999999   99999999999999999999999999999886432211  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (320)
T cd05590         155 TFCGTPDYIAP  165 (320)
T ss_pred             ccccCccccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-22  Score=198.45  Aligned_cols=132  Identities=28%  Similarity=0.462  Sum_probs=112.7

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEe----------------------eccCccceeEEEEEeccCCcHHHHHHh
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFH----------------------FSCSNEDFRALVLEYTTNGSLEKVLYS  445 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~----------------------~~~~~~~~~~lv~ey~~~g~L~~~l~~  445 (527)
                      ...+-||.|+.|.||+|+++ ++.||||+++                      ..|.....++||||||+.|.|+.+|+.
T Consensus       127 sELeWlGSGaQGAVF~Grl~-netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka  205 (904)
T KOG4721|consen  127 SELEWLGSGAQGAVFLGRLH-NETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKA  205 (904)
T ss_pred             hhhhhhccCcccceeeeecc-CceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhc
Confidence            44678999999999999997 4789999753                      246677788999999999999999975


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccc
Q 035895          446 SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM  525 (527)
Q Consensus       446 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~  525 (527)
                      .. .+.....+.+..+||.|+.|||   .+.|||||||+-|||+..+-.+||+|||.++.+.+..   +.-.++||..||
T Consensus       206 ~~-~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S---TkMSFaGTVaWM  278 (904)
T KOG4721|consen  206 GR-PITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS---TKMSFAGTVAWM  278 (904)
T ss_pred             cC-ccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEeccccchHhhhhhh---hhhhhhhhHhhh
Confidence            44 4566677889999999999999   9999999999999999999999999999999876442   233578999999


Q ss_pred             cC
Q 035895          526 AP  527 (527)
Q Consensus       526 aP  527 (527)
                      ||
T Consensus       279 AP  280 (904)
T KOG4721|consen  279 AP  280 (904)
T ss_pred             CH
Confidence            98

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4e-22  Score=185.01  Aligned_cols=138  Identities=30%  Similarity=0.406  Sum_probs=114.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|+..++||+|.||+|..++. .+++-+|||+++.                                +.+..+..++|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            46789999999999999999985 5789999998642                                23456788999


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+.||.|.-++... ..++..+...+..+|..||.|||   +++||.||+|.+|.|+|.+|++||+|||+++.--...
T Consensus       247 MeyanGGeLf~HLsre-r~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRE-RVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             EEEccCceEeeehhhh-hcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhccccc
Confidence            9999999999888754 45666667778999999999999   9999999999999999999999999999998532111


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                        .+....+||+.|.||
T Consensus       323 --~t~kTFCGTPEYLAP  337 (516)
T KOG0690|consen  323 --DTTKTFCGTPEYLAP  337 (516)
T ss_pred             --ceeccccCChhhcCc
Confidence              123357899999998

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.85  E-value=2.4e-22  Score=182.40  Aligned_cols=136  Identities=33%  Similarity=0.534  Sum_probs=114.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------------cCccc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------------CSNED  425 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------------~~~~~  425 (527)
                      ..|+..+.+|+|..++|.++.+ ++|.++|+|++...                                      +..+.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            3467788999999999988865 57899999987532                                      22344


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +.++|+|.|+.|.|.+++... -.++..+..+|+.|+.+|++|+|   +++|||||+||+|||+|++.++||+|||+|..
T Consensus        97 F~FlVFdl~prGELFDyLts~-VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYLTSK-VTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             hhhhhhhhcccchHHHHhhhh-eeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeeccccceEEeccceeec
Confidence            667999999999999999753 34677788899999999999999   99999999999999999999999999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.....   -...+||++|.||
T Consensus       173 l~~Gek---LrelCGTPgYLAP  191 (411)
T KOG0599|consen  173 LEPGEK---LRELCGTPGYLAP  191 (411)
T ss_pred             cCCchh---HHHhcCCCcccCh
Confidence            764432   2357899999998

>PLN03210 Resistant to P

Probab=99.85  E-value=1.6e-20  Score=215.61  Aligned_cols=286  Identities=22%  Similarity=0.236  Sum_probs=154.2

Q ss_pred             cCchhhhcCCCCCEEEcccccc------cc-------ccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccC
Q 035895           35 IVSITIFNLSTLKVFDVDNNYV------LG-------RLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN  101 (527)
Q Consensus        35 ~~~~~~~~l~~L~~L~Ls~N~~------~~-------~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  101 (527)
                      +.+.+|.+|++|+.|.+..+..      ..       .+|..++.|++.++.++.++..+       .+.+|++|+|++|
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-------~~~~L~~L~L~~s  621 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-------RPENLVKLQMQGS  621 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-------CccCCcEEECcCc
Confidence            4456788899999888866531      11       12345677777777777665532       2456677777777


Q ss_pred             CCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccC
Q 035895          102 PLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP  181 (527)
Q Consensus       102 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  181 (527)
                      ++.. ++..+..+. +|+.|+|++|.....+|. +..+++|++|+|++|.....+|..++.+++|+.|++++|..-+.+|
T Consensus       622 ~l~~-L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        622 KLEK-LWDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             cccc-cccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            6664 344444443 577777766554334443 5566677777776665545566666666777777776654333455


Q ss_pred             hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhh------------------------------
Q 035895          182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSIL------------------------------  231 (527)
Q Consensus       182 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~------------------------------  231 (527)
                      ..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.++.+|..+                              
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence            443 5566666666666544344432   234555555555555555321                              


Q ss_pred             hCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCE
Q 035895          232 WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES  311 (527)
Q Consensus       232 ~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  311 (527)
                      ...++|+.|++++|.....+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence            001245555555555555556666666666666666554334444433 3445555555544332222221   123444


Q ss_pred             EeCCCCcccccCccchhhhccCCeeEee
Q 035895          312 LDLSNNNLSEIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       312 L~ls~N~l~~~~p~~~~~l~~L~~L~~~  339 (527)
                      |+|++|.++. +|.++..+..|+.|+++
T Consensus       851 L~Ls~n~i~~-iP~si~~l~~L~~L~L~  877 (1153)
T PLN03210        851 LNLSRTGIEE-VPWWIEKFSNLSFLDMN  877 (1153)
T ss_pred             eECCCCCCcc-ChHHHhcCCCCCEEECC
Confidence            4444444432 33344444444444433

syringae 6; Provisional

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.85  E-value=2.9e-21  Score=192.93  Aligned_cols=131  Identities=34%  Similarity=0.409  Sum_probs=106.8

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ++||+|+||.||+|+.. +++.||||++...                                 +..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46999999999999864 5789999987421                                 1233456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|...+... ..+++.....++.+++.||+|||   +++|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~  154 (321)
T cd05591          81 GDLMFQIQRS-RKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTT  154 (321)
T ss_pred             CcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--ccc
Confidence            9999988654 35788888899999999999999   99999999999999999999999999999886432221  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (321)
T cd05591         155 TFCGTPDYIAP  165 (321)
T ss_pred             ccccCccccCH
Confidence            34588899998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PLN03210 Resistant to P

Probab=99.85  E-value=2.4e-20  Score=214.22  Aligned_cols=292  Identities=20%  Similarity=0.250  Sum_probs=214.2

Q ss_pred             ceeecCchhhhcC-CCCCEEEcccccccccc----ccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCc
Q 035895           31 KLVGIVSITIFNL-STLKVFDVDNNYVLGRL----SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDG  105 (527)
Q Consensus        31 ~l~~~~~~~~~~l-~~L~~L~Ls~N~~~~~~----~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  105 (527)
                      .+....|..|..+ .+|+.|++++|.+...+    +..++.|+|++|++..+..      .+..+++|+.|+|++|....
T Consensus       575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~------~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD------GVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             cceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc------ccccCCCCCEEECCCCCCcC
Confidence            3444556666666 46899999888764322    2457889999998877543      34678888999998876444


Q ss_pred             ccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhh
Q 035895          106 FLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC  185 (527)
Q Consensus       106 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~  185 (527)
                      .+|. +..+ ++|+.|+|++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..  
T Consensus       649 ~ip~-ls~l-~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--  723 (1153)
T PLN03210        649 EIPD-LSMA-TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--  723 (1153)
T ss_pred             cCCc-cccC-CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--
Confidence            5564 4444 478888988887666788888888888899888865444555544 6788888888887655455543  


Q ss_pred             cCcccCeeeeecccCCCCCCccc------------------------------cCCccCceeeCCCCC-CCCCchhhhCC
Q 035895          186 HLAVLFQLDLRGNKLSGSIPTCF------------------------------GNLTALRNLHLDSNE-LTSIPSILWNL  234 (527)
Q Consensus       186 ~l~~L~~L~L~~N~l~~~~p~~~------------------------------~~l~~L~~L~L~~N~-l~~lp~~~~~l  234 (527)
                       ..+|+.|++++|.+.. +|..+                              ...++|+.|++++|. +..+|..+.++
T Consensus       724 -~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L  801 (1153)
T PLN03210        724 -STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL  801 (1153)
T ss_pred             -cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence             3467777777777653 33221                              123578888888885 45589999999


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeC
Q 035895          235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL  314 (527)
Q Consensus       235 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  314 (527)
                      ++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|++
T Consensus       802 ~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L  876 (1153)
T PLN03210        802 HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDM  876 (1153)
T ss_pred             CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEEC
Confidence            999999999887777788766 7899999999998766666653   367899999999997 67888999999999999


Q ss_pred             CCC-cccccCccchhhhccCCeeEeeee
Q 035895          315 SNN-NLSEIIPLSLEKLLYLNILLIVVV  341 (527)
Q Consensus       315 s~N-~l~~~~p~~~~~l~~L~~L~~~~~  341 (527)
                      ++| ++.. +|.....+++|+.++++.+
T Consensus       877 ~~C~~L~~-l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        877 NGCNNLQR-VSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCCcCc-cCcccccccCCCeeecCCC
Confidence            985 5544 6667778888888876644

syringae 6; Provisional

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.85  E-value=3.2e-21  Score=192.07  Aligned_cols=131  Identities=28%  Similarity=0.436  Sum_probs=107.2

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|+.. +|+.||+|+++..                                 +...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            47999999999999865 6889999987521                                 1233567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 g~L~~~i~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (316)
T cd05620          81 GDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN--RAS  154 (316)
T ss_pred             CcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC--cee
Confidence            9999988654 35788888899999999999999   99999999999999999999999999999875322111  223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..|+||
T Consensus       155 ~~~gt~~y~aP  165 (316)
T cd05620         155 TFCGTPDYIAP  165 (316)
T ss_pred             ccCCCcCccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=3.6e-21  Score=191.40  Aligned_cols=129  Identities=33%  Similarity=0.423  Sum_probs=106.6

Q ss_pred             eccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||.||+|+.. +++.||+|++..                                .+..++..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            799999999999864 688999998742                                12234567899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++... ..+++.....++.|++.||+|||   +++|+||||||+||+++.++.+|++|||+++.......  ......
T Consensus        81 ~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~  154 (312)
T cd05585          81 FHHLQRE-GRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD--KTNTFC  154 (312)
T ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC--cccccc
Confidence            9998754 35788888999999999999999   99999999999999999999999999999986432211  122346


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ||+.||||
T Consensus       155 gt~~y~aP  162 (312)
T cd05585         155 GTPEYLAP  162 (312)
T ss_pred             CCcccCCH
Confidence            88999998

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-21  Score=197.02  Aligned_cols=139  Identities=30%  Similarity=0.451  Sum_probs=111.3

Q ss_pred             cCCccccceeccCCceEEEEEEccC--C---cEEEEEEEee--------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD--G---MEFAIKVFHF--------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~--~---~~vavK~~~~--------------------------------~~~~~~~  426 (527)
                      -++-...++||+|+||.||+|+++.  +   ..||||....                                .+..+..
T Consensus       156 H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P  235 (474)
T KOG0194|consen  156 HSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP  235 (474)
T ss_pred             ccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc
Confidence            3445566999999999999998643  2   2389998753                                1234455


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++|||+|+||+|.++|++.+..++..++..++.+.|.||+|||   ++++|||||-++|+|++.++.+||+|||+++.-
T Consensus       236 l~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~  312 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAG  312 (474)
T ss_pred             cEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCeEEeCccccccCC
Confidence            67999999999999999987767899999999999999999999   999999999999999999999999999998864


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  ...........+.|+||
T Consensus       313 ~~--~~~~~~~~klPirWLAP  331 (474)
T KOG0194|consen  313 SQ--YVMKKFLKKLPIRWLAP  331 (474)
T ss_pred             cc--eeeccccccCcceecCh
Confidence            31  11111122356789998

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.85  E-value=3.7e-21  Score=192.40  Aligned_cols=134  Identities=29%  Similarity=0.438  Sum_probs=110.2

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRALV  430 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~lv  430 (527)
                      |++.+.||+|+||.||+|+. .+++.||||++...                                   +...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            67789999999999999986 46899999997521                                   1123456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|...+..  ..+++.+...++.|++.|++|+|   +.+|+||||||+||++++++.+||+|||+++......
T Consensus        81 ~E~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~  155 (324)
T cd05589          81 MEYAAGGDLMMHIHT--DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFG  155 (324)
T ss_pred             EcCCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCC
Confidence            999999999988754  35788899999999999999999   9999999999999999999999999999987543221


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......|++.||||
T Consensus       156 ~--~~~~~~g~~~y~aP  170 (324)
T cd05589         156 D--RTSTFCGTPEFLAP  170 (324)
T ss_pred             C--cccccccCccccCH
Confidence            1  12234688899998

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.85  E-value=4.1e-21  Score=192.00  Aligned_cols=131  Identities=35%  Similarity=0.458  Sum_probs=107.2

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||+||+|+.. +|+.||+|++...                                 +...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            47999999999999864 6899999987421                                 1233466899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++.....++.||+.||+|||   +++|+||||||+||++++++.+|++|||+++.......  ...
T Consensus        81 g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (323)
T cd05575          81 GELFFHLQRE-RSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK--TTS  154 (323)
T ss_pred             CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC--ccc
Confidence            9999988754 35778888889999999999999   99999999999999999999999999999876432211  223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (323)
T cd05575         155 TFCGTPEYLAP  165 (323)
T ss_pred             cccCChhhcCh
Confidence            35688999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.85  E-value=2.9e-21  Score=196.95  Aligned_cols=140  Identities=26%  Similarity=0.441  Sum_probs=109.2

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------cCcccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------CSNEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~~~~~~~  427 (527)
                      ++|++.+.||+|+||.||+|+.      .++..||||+++..                               +...+..
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~  114 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPT  114 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcc
Confidence            4588899999999999999963      34668999987421                               2233456


Q ss_pred             EEEEEeccCCcHHHHHHhcC------------------------------------------------------------
Q 035895          428 ALVLEYTTNGSLEKVLYSSN------------------------------------------------------------  447 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~------------------------------------------------------------  447 (527)
                      ++|||||++|+|.+++....                                                            
T Consensus       115 ~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSY  194 (375)
T ss_pred             eeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccccee
Confidence            79999999999999886421                                                            


Q ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          448 --------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       448 --------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                                    ..+++.....++.||+.|++|+|   +++|+||||||+||++++++.+|++|||+++.........
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  271 (375)
T cd05104         195 IDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYV  271 (375)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCccccc
Confidence                          13677788899999999999999   9999999999999999999999999999998764332211


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..||||
T Consensus       272 ~~~~~~~~~~y~aP  285 (375)
T cd05104         272 VKGNARLPVKWMAP  285 (375)
T ss_pred             ccCCCCCCcceeCh
Confidence            11122345679998

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.85  E-value=4.4e-21  Score=191.93  Aligned_cols=131  Identities=34%  Similarity=0.446  Sum_probs=107.3

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||+||+|+. .+|+.||+|++...                                 +..++..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999999985 56899999987421                                 1234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++.+...++.||+.||+|||   +.+|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~  154 (325)
T cd05604          81 GELFFHLQRE-RSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD--TTT  154 (325)
T ss_pred             CCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC--Ccc
Confidence            9999888654 35788888899999999999999   99999999999999999999999999999875422211  223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..||||
T Consensus       155 ~~~gt~~y~aP  165 (325)
T cd05604         155 TFCGTPEYLAP  165 (325)
T ss_pred             cccCChhhCCH
Confidence            45688999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-21  Score=199.03  Aligned_cols=134  Identities=35%  Similarity=0.561  Sum_probs=110.8

Q ss_pred             cccceeccCCceEEEEEE-ccCCcEEEEEEEeec---------------------------c--Cc-------cceeEEE
Q 035895          388 SANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFS---------------------------C--SN-------EDFRALV  430 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~---------------------------~--~~-------~~~~~lv  430 (527)
                      ...+.||+||||.||+|+ ..+|+.||||.+...                           +  .+       .+...+|
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            445789999999999999 568999999986431                           1  11       2345699


Q ss_pred             EEeccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--CCCc--EEEeeccccc
Q 035895          431 LEYTTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--DNIV--AHLSDFGIAK  504 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~--~kl~Dfg~a~  504 (527)
                      ||||+||||+.++.+.+  +.++..+.+.+..+++.|+.|||   .++||||||||.||++-  ++|+  -|++|||.||
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            99999999999998764  45888899999999999999999   99999999999999994  4443  5899999999


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .++++.   ..+..+||..|.||
T Consensus       173 el~d~s---~~~S~vGT~~YLhP  192 (732)
T KOG4250|consen  173 ELDDNS---LFTSLVGTEEYLHP  192 (732)
T ss_pred             cCCCCC---eeeeecCchhhcCh
Confidence            987654   34567899999998

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.85  E-value=4.2e-21  Score=191.32  Aligned_cols=140  Identities=24%  Similarity=0.377  Sum_probs=111.2

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCc----EEEEEEEeecc-----------------------------CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGM----EFAIKVFHFSC-----------------------------SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~----~vavK~~~~~~-----------------------------~~~~~~~lv  430 (527)
                      .+|+..+.||+|+||.||+|++. +++    .||+|++....                             ...+..++|
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v   86 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   86 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceee
Confidence            46899999999999999999853 333    48999874211                             012345689


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      +||+++|+|.+++......+++.....++.||+.||+|||   +++|+||||||+||++++++.+||+|||+++.+....
T Consensus        87 ~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~  163 (316)
T cd05108          87 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADE  163 (316)
T ss_pred             eecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCC
Confidence            9999999999999876666788888999999999999999   9999999999999999999999999999999775332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........++..||||
T Consensus       164 ~~~~~~~~~~~~~y~ap  180 (316)
T cd05108         164 KEYHAEGGKVPIKWMAL  180 (316)
T ss_pred             cceeccCCccceeecCh
Confidence            22222223346679987

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.85  E-value=2.7e-21  Score=197.04  Aligned_cols=141  Identities=26%  Similarity=0.463  Sum_probs=109.2

Q ss_pred             cCCccccceeccCCceEEEEEEc------cCCcEEEEEEEee-------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF-------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~-------------------------------~~~~~~~  426 (527)
                      .++|++.+.||+|+||.||+|+.      .++..||||++..                               .+...+.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            34688999999999999999873      2346799998742                               1223456


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------------------------------------------
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------------------------------------------  447 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------------------------  447 (527)
                      .++|||||++|+|.+++....                                                           
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD  196 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence            789999999999999886421                                                           


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceec
Q 035895          448 ----------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       448 ----------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                                ..+++.+..+++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.............
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~  273 (374)
T cd05106         197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGN  273 (374)
T ss_pred             ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccC
Confidence                      13567788899999999999999   99999999999999999999999999999987643322111112


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..++..||||
T Consensus       274 ~~~~~~y~aP  283 (374)
T cd05106         274 ARLPVKWMAP  283 (374)
T ss_pred             CCCccceeCH
Confidence            2345679998

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.85  E-value=9.2e-23  Score=187.34  Aligned_cols=137  Identities=31%  Similarity=0.454  Sum_probs=114.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------cC------------ccceeEEEEEeccCC
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------CS------------NEDFRALVLEYTTNG  437 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------~~------------~~~~~~lv~ey~~~g  437 (527)
                      -|.+..+||+|+||.||+|.+ .+|+.+|||.+...               |.            .....++|||||..|
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCC
Confidence            378889999999999999976 46999999987431               21            223457999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceec
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                      +..++++.....+...+...+....+.||+|||   ...-||||||+.|||++-+|.+|++|||+|-.+.+..  .....
T Consensus       114 SiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM--AKRNT  188 (502)
T KOG0574|consen  114 SISDIMRARRKPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM--AKRNT  188 (502)
T ss_pred             cHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccchhhhhH--HhhCc
Confidence            999999988788888888889999999999999   7778999999999999999999999999998775321  22334


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..||+.||||
T Consensus       189 VIGTPFWMAP  198 (502)
T KOG0574|consen  189 VIGTPFWMAP  198 (502)
T ss_pred             cccCcccccH
Confidence            6699999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=1e-23  Score=219.58  Aligned_cols=196  Identities=31%  Similarity=0.385  Sum_probs=106.2

Q ss_pred             CCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCC
Q 035895          141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLD  220 (527)
Q Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  220 (527)
                      +|+++++++|++++ +|..++.+.+|+.++..+|++. .+|..+....+|+.|++..|.++ -+|+....+.+|++|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            35556666666654 3366666666666666666664 45555555555555555555555 234444555555566665


Q ss_pred             CCCCCCCchh--------------------------------------------------hhCCCCccEEEccCCccccc
Q 035895          221 SNELTSIPSI--------------------------------------------------LWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       221 ~N~l~~lp~~--------------------------------------------------~~~l~~L~~l~l~~n~~~~~  250 (527)
                      .|+|..+|+.                                                  +-+.+.|+.|+++.|++...
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            5555555432                                                  22333444444444444333


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhh
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL  330 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l  330 (527)
                      ....+.++..|+.|+||+|.+. .+|+++..++.|++|...+|++. ..| .+..++.|+.+|+|.|+|+...-......
T Consensus       399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence            3333444444444444444443 34444444455555555555554 345 66777777888888887776532222223


Q ss_pred             ccCCeeEeeeee
Q 035895          331 LYLNILLIVVVI  342 (527)
Q Consensus       331 ~~L~~L~~~~~~  342 (527)
                      +.|+.|+++++.
T Consensus       476 p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  476 PNLKYLDLSGNT  487 (1081)
T ss_pred             cccceeeccCCc
Confidence            677777777655

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.85  E-value=5.4e-21  Score=191.32  Aligned_cols=131  Identities=34%  Similarity=0.441  Sum_probs=106.1

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEee---------------------------------ccCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHF---------------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~---------------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||+||+|+.. +++.||+|++..                                 .+..++..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            47999999999999864 578899998742                                 11234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++...+ .+.......++.|++.||+|+|   +.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~  154 (325)
T cd05602          81 GELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTS  154 (325)
T ss_pred             CcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--Ccc
Confidence            99999987543 4566677789999999999999   99999999999999999999999999999986432211  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (325)
T cd05602         155 TFCGTPEYLAP  165 (325)
T ss_pred             cccCCccccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.85  E-value=5.3e-21  Score=191.48  Aligned_cols=131  Identities=31%  Similarity=0.399  Sum_probs=107.1

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|+. .+++.||+|++...                                 +...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4799999999999986 46789999997521                                 1223456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++..+..++.|++.|++|||   +++|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~~~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (327)
T cd05617          81 GDLMFHMQRQ-RKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD--TTS  154 (327)
T ss_pred             CcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC--cee
Confidence            9999888654 35788889999999999999999   99999999999999999999999999999975322211  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (327)
T cd05617         155 TFCGTPNYIAP  165 (327)
T ss_pred             cccCCcccCCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.85  E-value=5.1e-21  Score=203.28  Aligned_cols=141  Identities=29%  Similarity=0.362  Sum_probs=109.9

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-C----CcEEEEEEEeec-------------------------------cCccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-D----GMEFAIKVFHFS-------------------------------CSNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~----~~~vavK~~~~~-------------------------------~~~~~~  426 (527)
                      ..++|++.+.||+|+||.||+|+.. +    +..||+|++...                               +..++.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            4678999999999999999999874 4    689999986421                               123456


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCC-------------------CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCe
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYIL-------------------DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK  487 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~-------------------~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~ni  487 (527)
                      .++||||+++|+|.+++.......                   .......++.|++.||+|+|   +++|+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCCHHHE
Confidence            789999999999999986532111                   12234468999999999999   99999999999999


Q ss_pred             eeCC-CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          488 LLDD-NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       488 ll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++ ++.+||+|||+|+.+...... ......++++||||
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l~~~~~~-~~~~~~~t~~Y~AP  326 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADLRVGINY-IPKEFLLDPRYAAP  326 (566)
T ss_pred             EEeCCCCcEEEEeCCCcccccccccc-CCcccccCCCccCh
Confidence            9985 689999999999876433222 22345678899998

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.85  E-value=5.8e-21  Score=191.39  Aligned_cols=131  Identities=28%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ++||+|+||.||+|+.. +++.||+|+++..                                 +..++..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            47999999999999864 6889999987521                                 1223456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 g~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~--~~~  154 (329)
T cd05588          81 GDLMFHMQRQ-RKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD--TTS  154 (329)
T ss_pred             CCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCCC--ccc
Confidence            9999888654 45788889999999999999999   99999999999999999999999999999875322111  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       155 ~~~gt~~y~aP  165 (329)
T cd05588         155 TFCGTPNYIAP  165 (329)
T ss_pred             cccCCccccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.85  E-value=6.4e-21  Score=189.91  Aligned_cols=131  Identities=30%  Similarity=0.432  Sum_probs=106.7

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||+||+|+.. +++.||||+++..                                 +...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            47999999999999864 5789999987531                                 1223456799999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++... ..+++.+...++.|++.|++|||   +++|+||||||+||++++++.+|++|||+++.......  ...
T Consensus        81 g~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (316)
T cd05619          81 GDLMFHIQSC-HKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--KTC  154 (316)
T ss_pred             CcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--cee
Confidence            9999998653 35788888899999999999999   99999999999999999999999999999875422111  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..||||
T Consensus       155 ~~~gt~~y~aP  165 (316)
T cd05619         155 TFCGTPDYIAP  165 (316)
T ss_pred             eecCCccccCH
Confidence            34588899998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=186.22  Aligned_cols=139  Identities=27%  Similarity=0.349  Sum_probs=114.1

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~  428 (527)
                      ...+|....+||+|+||.|.+|..+ +.+.+|||+++..                                 ...-+..|
T Consensus       347 ~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLy  426 (683)
T KOG0696|consen  347 KATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLY  426 (683)
T ss_pred             eecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhee
Confidence            3457999999999999999999765 5678999987531                                 12335678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+.||+|..+++..+. +....+..+|.+||.||-+||   +++||.||||..||++|.+|++||+|||+++.--.
T Consensus       427 FVMEyvnGGDLMyhiQQ~Gk-FKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~  502 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQVGK-FKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIF  502 (683)
T ss_pred             eEEEEecCchhhhHHHHhcc-cCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeeccccccccc
Confidence            99999999999999976553 455677889999999999999   99999999999999999999999999999985322


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++  .+....+||+.||||
T Consensus       503 ~~--~TTkTFCGTPdYiAP  519 (683)
T KOG0696|consen  503 DG--VTTKTFCGTPDYIAP  519 (683)
T ss_pred             CC--cceeeecCCCccccc
Confidence            22  123347899999998

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.85  E-value=6e-21  Score=190.63  Aligned_cols=131  Identities=35%  Similarity=0.454  Sum_probs=106.2

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEee---------------------------------ccCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHF---------------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~---------------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ++||+|+||.||+|+.. +++.||+|++..                                 .+...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            47999999999999874 688999998742                                 11234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|...+... ..+...+...++.||+.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (321)
T cd05603          81 GELFFHLQRE-RCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE--TTS  154 (321)
T ss_pred             CCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC--ccc
Confidence            9999888654 35677778889999999999999   99999999999999999999999999999885422211  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.|+||
T Consensus       155 ~~~gt~~y~aP  165 (321)
T cd05603         155 TFCGTPEYLAP  165 (321)
T ss_pred             cccCCcccCCH
Confidence            34688999998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.85  E-value=6.2e-21  Score=191.11  Aligned_cols=131  Identities=31%  Similarity=0.382  Sum_probs=106.9

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|+. .+++.||+|++...                                 +..++..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4799999999999986 46789999987531                                 1223467899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++.....++.+++.|++|+|   +++|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~  154 (329)
T cd05618          81 GDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTS  154 (329)
T ss_pred             CCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccc
Confidence            9999888654 35788888999999999999999   99999999999999999999999999999986432211  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..|+||
T Consensus       155 ~~~gt~~y~aP  165 (329)
T cd05618         155 TFCGTPNYIAP  165 (329)
T ss_pred             cccCCccccCH
Confidence            34688999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=5.6e-21  Score=191.65  Aligned_cols=129  Identities=31%  Similarity=0.411  Sum_probs=105.5

Q ss_pred             eccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------------cCccceeEEEEEeccC
Q 035895          393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       393 lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ||+|+||+||+|+.. +++.||||++...                                   +...+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            799999999999864 6899999987420                                   1123456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..++......++.||++||+|||   +++|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        81 g~L~~~l~~~-~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~  154 (330)
T cd05586          81 GELFWHLQKE-GRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTN  154 (330)
T ss_pred             ChHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--Ccc
Confidence            9999988654 45788888999999999999999   99999999999999999999999999999976432221  122


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..||||
T Consensus       155 ~~~gt~~y~aP  165 (330)
T cd05586         155 TFCGTTEYLAP  165 (330)
T ss_pred             CccCCccccCH
Confidence            35688999998

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=2.8e-21  Score=189.60  Aligned_cols=132  Identities=30%  Similarity=0.497  Sum_probs=110.5

Q ss_pred             cceeccCCceEEEEEEc-cCCcEEEEEEEee-------------------------------ccCccceeEEEEEeccCC
Q 035895          390 NNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-------------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      .++||.|.||+||-|.+ ++|+.||||++..                               -+...+..++|||-+.|.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            58999999999999986 5799999999743                               134567788999999876


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCCCCCccc
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      -|+-++...++.++......++.||+.||.|||   -++|+|+||||+|||+.+   --++|+||||+||++....  ..
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks--FR  723 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS--FR  723 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhh--hh
Confidence            677777777778888888889999999999999   899999999999999963   3589999999999996443  22


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                       ...+||+.|.||
T Consensus       724 -rsVVGTPAYLaP  735 (888)
T KOG4236|consen  724 -RSVVGTPAYLAP  735 (888)
T ss_pred             -hhhcCCccccCH
Confidence             246799999998

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=3.3e-22  Score=193.10  Aligned_cols=137  Identities=35%  Similarity=0.469  Sum_probs=110.9

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccCc------------------------------cceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCSN------------------------------EDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~~------------------------------~~~~~lv~ey  433 (527)
                      ..|+..+.||+|+||.||+|.. ++++.||+|++......                              ....+++|||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            3477789999999999999985 67899999998642211                              1123478999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |.||++.+.+... ..++......|..++..|+.|+|   .++.+|||||+.||++..+|.+|++|||++..+.....  
T Consensus        93 ~~gGsv~~lL~~~-~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~--  166 (467)
T KOG0201|consen   93 CGGGSVLDLLKSG-NILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVK--  166 (467)
T ss_pred             hcCcchhhhhccC-CCCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeechhh--
Confidence            9999999998643 34466566678899999999999   99999999999999999999999999999988753321  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ....++||+.||||
T Consensus       167 rr~tfvGTPfwMAP  180 (467)
T KOG0201|consen  167 RRKTFVGTPFWMAP  180 (467)
T ss_pred             ccccccccccccch
Confidence            22457899999999

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=6.2e-21  Score=205.79  Aligned_cols=245  Identities=24%  Similarity=0.359  Sum_probs=189.0

Q ss_pred             CCCCEEEccccccccc---cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccE
Q 035895           44 STLKVFDVDNNYVLGR---LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF  120 (527)
Q Consensus        44 ~~L~~L~Ls~N~~~~~---~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  120 (527)
                      .+...|+++++.++..   +|..++.|+|++|+|++++..+        .++|++|++++|+++. +|..+.   .+|+.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l--------~~nL~~L~Ls~N~Lts-LP~~l~---~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENL--------QGNIKTLYANSNQLTS-IPATLP---DTIQE  245 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhh--------ccCCCEEECCCCcccc-CChhhh---ccccE
Confidence            3567888888876532   3456889999999999876542        2579999999999986 465543   47999


Q ss_pred             EEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccC
Q 035895          121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL  200 (527)
Q Consensus       121 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  200 (527)
                      |+|++|++. .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|++
T Consensus       246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        246 MELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL  316 (754)
T ss_pred             EECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc
Confidence            999999998 4565554  579999999999985 455443  589999999999984 555443  4789999999999


Q ss_pred             CCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhh
Q 035895          201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ  280 (527)
Q Consensus       201 ~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  280 (527)
                      +. +|..+.  ++|+.|++++|.++.+|..+.  ++|+.|++++|++. .+|..+.  +.|++|++++|+++. +|..+.
T Consensus       317 t~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~  387 (754)
T PRK15370        317 TA-LPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP  387 (754)
T ss_pred             cc-CCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH
Confidence            85 454332  689999999999999997664  68999999999887 4666553  689999999999984 565554


Q ss_pred             cCCCCCEEEcccccceeecCCCC----CCCCCCCEEeCCCCcccc
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSF----DDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~~  321 (527)
                        .+|+.|++++|+++ .+|..+    ..++.+..|++.+|+++.
T Consensus       388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence              36899999999998 455543    445788999999999863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=1e-22  Score=212.12  Aligned_cols=263  Identities=29%  Similarity=0.347  Sum_probs=200.8

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ++.|+.++|.++.....       ..-.+|+.+|+++|++++ +|+++..+. +|+.+...+|+++ .+|..+..+.+|+
T Consensus       221 l~~L~a~~n~l~~~~~~-------p~p~nl~~~dis~n~l~~-lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  221 LTALYADHNPLTTLDVH-------PVPLNLQYLDISHNNLSN-LPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLV  290 (1081)
T ss_pred             hheeeeccCcceeeccc-------cccccceeeecchhhhhc-chHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHH
Confidence            45555666655532211       123568888888888886 457777664 6888888888885 5666677777888


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhh--------------------------cCcccCeeeeec
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC--------------------------HLAVLFQLDLRG  197 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~--------------------------~l~~L~~L~L~~  197 (527)
                      .|.+.+|.+. -+|....++++|+.|+|..|+|. .+|+.|-                          ..+.|+.|++.+
T Consensus       291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            8888888887 35566777888889999888887 3443221                          124578888999


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      |.++...-+.+.+..+|++|+|++|+|..+|+. +.++..|+.|++++|.++ .+|+.+..++.|++|....|++. ..|
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP  446 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP  446 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech
Confidence            999876666788999999999999999999975 577899999999999987 57899999999999999999997 677


Q ss_pred             hhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeee
Q 035895          277 TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVV  341 (527)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~  341 (527)
                       .+..++.|+.+|++.|+++...-..-...++|++||+++|.-....-..|..++.+...++..+
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             8999999999999999998543333333489999999999854555567777777777766644

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.84  E-value=8.6e-21  Score=189.66  Aligned_cols=131  Identities=34%  Similarity=0.464  Sum_probs=106.3

Q ss_pred             ceeccCCceEEEEEEc----cCCcEEEEEEEee---------------------------------ccCccceeEEEEEe
Q 035895          391 NLIGRGSFGSVYKARL----QDGMEFAIKVFHF---------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~----~~~~~vavK~~~~---------------------------------~~~~~~~~~lv~ey  433 (527)
                      +.||+|+||.||+|+.    .+++.||+|++..                                 .+..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            6899999999999975    3578999998742                                 11234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++...+ .+.......++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  
T Consensus        82 ~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--  155 (323)
T cd05584          82 LSGGELFMHLEREG-IFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--  155 (323)
T ss_pred             CCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--
Confidence            99999999987543 4566777889999999999999   99999999999999999999999999999985432221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......||+.|+||
T Consensus       156 ~~~~~~gt~~y~aP  169 (323)
T cd05584         156 VTHTFCGTIEYMAP  169 (323)
T ss_pred             cccccCCCccccCh
Confidence            12234588999998

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=4.2e-21  Score=193.77  Aligned_cols=138  Identities=29%  Similarity=0.391  Sum_probs=115.8

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      .++-|++.+.||.|+-|.|-.|++ .+|+.+|||++..                                ........|+
T Consensus        10 tiGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lyl   89 (786)
T KOG0588|consen   10 TIGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYL   89 (786)
T ss_pred             cccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEE
Confidence            356688999999999999999986 6899999998742                                1234567789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |.||++||.|.+++...+ .+...++.+++.||..|+.|+|   +.+|||||+||+|+|+|.++.+||+|||+|..-..+
T Consensus        90 vlEyv~gGELFdylv~kG-~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~g  165 (786)
T KOG0588|consen   90 VLEYVPGGELFDYLVRKG-PLPEREAAHFFRQILDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPG  165 (786)
T ss_pred             EEEecCCchhHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccCC
Confidence            999999999999998765 4566677889999999999999   999999999999999999999999999999875433


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .  .-. ..+|++.|.||
T Consensus       166 k--lLe-TSCGSPHYA~P  180 (786)
T KOG0588|consen  166 K--LLE-TSCGSPHYAAP  180 (786)
T ss_pred             c--ccc-ccCCCcccCCc
Confidence            2  222 35799999998

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.84  E-value=1e-20  Score=198.82  Aligned_cols=139  Identities=22%  Similarity=0.317  Sum_probs=112.6

Q ss_pred             CccccceeccCCceEEEEEEcc-C-CcEEEEEEEee-----------------------------ccCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-D-GMEFAIKVFHF-----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~-~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~  434 (527)
                      .|.+.+.||+|+||.||+|... + ++.||+|.+..                             .+..++..++||||+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            4889999999999999999753 3 57788886521                             233456788999999


Q ss_pred             cCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.+++...   ...+++.+...++.|++.||+|+|   +++|+||||||+||+++.++.+||+|||+|+.+.....
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~  224 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVS  224 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccc
Confidence            999999987542   345778888889999999999999   99999999999999999999999999999987653322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .......+||++||||
T Consensus       225 ~~~~~~~~gt~~y~aP  240 (478)
T PTZ00267        225 LDVASSFCGTPYYLAP  240 (478)
T ss_pred             cccccccCCCccccCH
Confidence            1222345689999998

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=189.44  Aligned_cols=136  Identities=31%  Similarity=0.452  Sum_probs=114.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~l  429 (527)
                      .+.|++.+.||+|+||+||+++.+ +|+.+|+|++...                                 ...++..++
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            356888899999999999999975 5999999987421                                 223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC----CCcEEEeecccccc
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD----NIVAHLSDFGIAKL  505 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~Dfg~a~~  505 (527)
                      |||+|.||+|.+.+... . ++..++..++.+++.++.|+|   +.+|+|||+||+|+|+..    ++.+|++|||+|..
T Consensus       114 vmEL~~GGeLfd~i~~~-~-~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~  188 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK-H-YSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKF  188 (382)
T ss_pred             EEEecCCchHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCceE
Confidence            99999999999998766 3 788889999999999999999   999999999999999963    35899999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....   ......+||++|+||
T Consensus       189 ~~~~---~~~~~~~Gtp~y~AP  207 (382)
T KOG0032|consen  189 IKPG---ERLHTIVGTPEYVAP  207 (382)
T ss_pred             ccCC---ceEeeecCCccccCc
Confidence            7652   123457899999999

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=1.6e-20  Score=184.26  Aligned_cols=136  Identities=30%  Similarity=0.460  Sum_probs=112.4

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||.||+|.. .+++.||+|++..                                .+..++..++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            478889999999999999986 4689999998742                                1123456789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++.... ..+++.....++.|++.|++|+|   +.+|+||||||+||++++++.++++|||+++.......
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET  157 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc
Confidence            999999998886543 45788889999999999999999   99999999999999999999999999999987643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....++..||||
T Consensus       158 ---~~~~~~~~~y~aP  170 (285)
T cd05605         158 ---IRGRVGTVGYMAP  170 (285)
T ss_pred             ---cccccCCCCccCc
Confidence               1234578889998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.84  E-value=1e-20  Score=183.73  Aligned_cols=139  Identities=22%  Similarity=0.354  Sum_probs=111.4

Q ss_pred             CCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~------------------------------~~~~~~~~lv  430 (527)
                      .+|++.+.||+|+||.||+|.+.    .+..||+|+++..                              +...+..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            46889999999999999999753    4578999986532                              2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++.+...++.+++.|++|+|   +++++||||||+||+++.++.+|++|||.+.......
T Consensus        85 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~  161 (266)
T cd05064          85 TEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA  161 (266)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence            9999999999999876567889999999999999999999   9999999999999999999999999999876543221


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .. ......++..|+||
T Consensus       162 ~~-~~~~~~~~~~y~aP  177 (266)
T cd05064         162 IY-TTMSGKSPVLWAAP  177 (266)
T ss_pred             hh-cccCCCCceeecCH
Confidence            11 11122345678887

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.84  E-value=1.3e-20  Score=195.36  Aligned_cols=140  Identities=24%  Similarity=0.263  Sum_probs=114.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee-----------------------ccCccceeEEEEEeccCCcH
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-----------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-----------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ..+|.+.+.||+|+||.||+|+.. +++.||||....                       .+...+..++||||+. |+|
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L  246 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDL  246 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCH
Confidence            457999999999999999999875 578999996321                       1234567789999995 689


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      ..++......+++.++..|+.|++.||+|||   +++||||||||+|||++.++.+||+|||+++...............
T Consensus       247 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~  323 (461)
T PHA03211        247 YTYLGARLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIA  323 (461)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccC
Confidence            8888765556899999999999999999999   9999999999999999999999999999998764332222222456


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ||..||||
T Consensus       324 GT~~Y~AP  331 (461)
T PHA03211        324 GTVDTNAP  331 (461)
T ss_pred             CCcCCcCH
Confidence            89999998

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.84  E-value=1.3e-20  Score=181.78  Aligned_cols=139  Identities=24%  Similarity=0.385  Sum_probs=113.4

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ++|++.+.||+|+||.||+|+.+++..+|+|.+..                            .+...+..++||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            45888899999999999999998888999998642                            12344567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++......+++.....++.+++.|++|+|   +++|+||||||+||++++++.+|++|||.++....... ....
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~-~~~~  159 (256)
T cd05114          84 GCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY-TSSS  159 (256)
T ss_pred             CcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCce-eccC
Confidence            9999998765556788889999999999999999   99999999999999999999999999999987543221 1112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       160 ~~~~~~~y~aP  170 (256)
T cd05114         160 GAKFPVKWSPP  170 (256)
T ss_pred             CCCCchhhCCh
Confidence            22345678887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.84  E-value=9.5e-21  Score=190.32  Aligned_cols=140  Identities=27%  Similarity=0.436  Sum_probs=109.5

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------c-Cccce
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------C-SNEDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~-~~~~~  426 (527)
                      +.|++.+.||+|+||.||+|+.      .+++.||+|++...                               | ..+..
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            4688999999999999999963      23578999986421                               1 12234


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------------------------------------------
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------------------------------------------  447 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------------------------  447 (527)
                      .++||||+++|+|.+++....                                                           
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            678999999999999886421                                                           


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecccccccccc
Q 035895          448 -YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA  526 (527)
Q Consensus       448 -~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a  526 (527)
                       ..+++.....++.||+.|++|+|   +.+|+||||||+||++++++.+||+|||+++.+.............++..|||
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  243 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  243 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccC
Confidence             14678889999999999999999   99999999999999999999999999999987643322222222335667999


Q ss_pred             C
Q 035895          527 P  527 (527)
Q Consensus       527 P  527 (527)
                      |
T Consensus       244 P  244 (337)
T cd05054         244 P  244 (337)
T ss_pred             c
Confidence            8

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.84  E-value=1.9e-20  Score=183.89  Aligned_cols=138  Identities=28%  Similarity=0.381  Sum_probs=111.3

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|++.+.||+|+||.||+|+.+ +++.||+|++...                               +..++..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            36889999999999999999975 6789999987531                               223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++++.+..+.. ....+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++....... 
T Consensus        81 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-  155 (287)
T cd07848          81 YVEKNMLELLEE-MPNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN-  155 (287)
T ss_pred             cCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCccccccccc-
Confidence            999987765543 3345788888999999999999999   99999999999999999999999999999987643221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......++.+|+||
T Consensus       156 ~~~~~~~~~~~y~aP  170 (287)
T cd07848         156 ANYTEYVATRWYRSP  170 (287)
T ss_pred             ccccccccccccCCc
Confidence            112234578899998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.84  E-value=1.3e-20  Score=184.14  Aligned_cols=141  Identities=26%  Similarity=0.388  Sum_probs=110.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCc----EEEEEEEeeccC-----------------------------ccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGM----EFAIKVFHFSCS-----------------------------NEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~----~vavK~~~~~~~-----------------------------~~~~~~l  429 (527)
                      .++|+..+.||+|+||+||+|++ .++.    .||+|++.....                             .....++
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l   85 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQL   85 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEE
Confidence            35688899999999999999985 3444    489998743110                             1224468


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      +|||+++|+|.+++......+++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.....
T Consensus        86 ~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~  162 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDID  162 (279)
T ss_pred             EEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeecccc
Confidence            99999999999999765566888899999999999999999   999999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..........++..||||
T Consensus       163 ~~~~~~~~~~~~~~y~~P  180 (279)
T cd05109         163 ETEYHADGGKVPIKWMAL  180 (279)
T ss_pred             cceeecCCCccchhhCCH
Confidence            221111222345678887

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.84  E-value=1.5e-20  Score=204.16  Aligned_cols=119  Identities=29%  Similarity=0.379  Sum_probs=101.2

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...                                +...+..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            67999999999999999999864 6899999987531                                12345668999


Q ss_pred             EeccCCcHHHHHHhc----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          432 EYTTNGSLEKVLYSS----------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       432 ey~~~g~L~~~l~~~----------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      ||++||+|.+++...          ....++.....++.||++||+|+|   +++|+||||||+||+++.++.+|++|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecC
Confidence            999999999988642          122456677889999999999999   9999999999999999999999999999


Q ss_pred             ccccc
Q 035895          502 IAKLL  506 (527)
Q Consensus       502 ~a~~~  506 (527)
                      +|+..
T Consensus       159 LAk~i  163 (932)
T PRK13184        159 AAIFK  163 (932)
T ss_pred             cceec
Confidence            99876

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.84  E-value=8.7e-21  Score=182.03  Aligned_cols=119  Identities=30%  Similarity=0.416  Sum_probs=103.9

Q ss_pred             cCCccccceeccCCceEEEEEEccC-CcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .+.|+..+.||.|.-|+||+|+.+. +..+|+|++..                                ..+.+.+.++|
T Consensus        76 l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~  155 (459)
T KOG0610|consen   76 LRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLV  155 (459)
T ss_pred             HHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEE
Confidence            3457888999999999999999864 68999999843                                12345678899


Q ss_pred             EEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          431 LEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||||+||+|..+.+++ +.+++...+..+|.+|..||+|||   -.|||.|||||+|||+.++|++.++||-++..
T Consensus       156 meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~  228 (459)
T KOG0610|consen  156 MEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLR  228 (459)
T ss_pred             EecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeecccccc
Confidence            9999999999988765 456888888889999999999999   99999999999999999999999999998754

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=182.36  Aligned_cols=140  Identities=27%  Similarity=0.431  Sum_probs=114.3

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeecc-----------------------------Cc---cceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-----------------------------SN---EDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-----------------------------~~---~~~~~lv~e  432 (527)
                      ++..+.+.||+|.||+||+|+++ |+.||||++...-                             .+   -.+.++|++
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTd  289 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTD  289 (513)
T ss_pred             heeEEEEEecCccccceeecccc-CCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeee
Confidence            34567899999999999999997 6899999984310                             00   125679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc-----CCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF-----GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~-----~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |-+.|+|+++|..  ..++....++++..+|.||++||.     .-++.|.|||||+.|||+..++.+.|+|+|+|-...
T Consensus       290 YHe~GSL~DyL~r--~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~  367 (513)
T KOG2052|consen  290 YHEHGSLYDYLNR--NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  367 (513)
T ss_pred             cccCCcHHHHHhh--ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEec
Confidence            9999999999975  468888899999999999999992     246789999999999999999999999999997654


Q ss_pred             CCCC--ccceeccccccccccC
Q 035895          508 GEDQ--SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~--~~~~~~~~~t~~y~aP  527 (527)
                      ....  .......+||-+||||
T Consensus       368 ~~t~~idi~~N~rVGTKRYMAP  389 (513)
T KOG2052|consen  368 SDTDTIDIPPNPRVGTKRYMAP  389 (513)
T ss_pred             ccCCcccCCCCCccceeeccCh
Confidence            3321  1233457899999999

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.84  E-value=1.6e-20  Score=183.70  Aligned_cols=140  Identities=26%  Similarity=0.371  Sum_probs=111.0

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCc----EEEEEEEeec-----------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGM----EFAIKVFHFS-----------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~----~vavK~~~~~-----------------------------~~~~~~~~lv  430 (527)
                      ++|+..+.||+|+||+||+|.+. +++    .||+|.+...                             +......+++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i   86 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLV   86 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEE
Confidence            46888899999999999999863 444    4777776321                             1112344689


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++.....++.|++.|++|+|   +++++||||||+||++++++.+|++|||+++......
T Consensus        87 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T cd05111          87 TQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDD  163 (279)
T ss_pred             EEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCccceeccCCC
Confidence            9999999999999876667899999999999999999999   9999999999999999999999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .....+...++..|+||
T Consensus       164 ~~~~~~~~~~~~~y~~p  180 (279)
T cd05111         164 KKYFYSEHKTPIKWMAL  180 (279)
T ss_pred             cccccCCCCCcccccCH
Confidence            22222234466789887

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.84  E-value=1.8e-20  Score=191.98  Aligned_cols=141  Identities=26%  Similarity=0.456  Sum_probs=110.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee-------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF-------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~-------------------------------~~~~~~~  426 (527)
                      .++|.+.+.||+|+||.||+|+..      .+..||||++..                               .+...+.
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~  115 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP  115 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence            467889999999999999999742      235799998742                               1233456


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------------------------------------------
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------------------------------------------  447 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------------------------  447 (527)
                      .++|||||++|+|.+++....                                                           
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (400)
T cd05105         116 IYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIK  195 (400)
T ss_pred             eEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhh
Confidence            789999999999999886421                                                           


Q ss_pred             ------------------------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC
Q 035895          448 ------------------------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD  491 (527)
Q Consensus       448 ------------------------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~  491 (527)
                                                          ..+++.+...++.|++.|++|||   +.+|+||||||+||++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~  272 (400)
T cd05105         196 EASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQ  272 (400)
T ss_pred             hhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeC
Confidence                                                13567777889999999999999   999999999999999999


Q ss_pred             CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+|++|||+++...............++..||||
T Consensus       273 ~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aP  308 (400)
T cd05105         273 GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAP  308 (400)
T ss_pred             CCEEEEEeCCcceeccccccccccCCcCCCcceECh
Confidence            999999999999876433222222233456789998

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.84  E-value=1.8e-20  Score=188.97  Aligned_cols=140  Identities=26%  Similarity=0.437  Sum_probs=108.3

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------c-Cccce
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------C-SNEDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~-~~~~~  426 (527)
                      ++|++.+.||+|+||.||+|+.      .+++.||||+++..                               + .....
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            5689999999999999999973      35788999987431                               1 11234


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------------------------------------------
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------------------------------------------  447 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------------------------  447 (527)
                      .++|||||++|+|.+++....                                                           
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  166 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence            578999999999999986421                                                           


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecccc
Q 035895          448 -------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA  520 (527)
Q Consensus       448 -------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  520 (527)
                             ..+++.+...++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++...............+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  243 (343)
T cd05103         167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARL  243 (343)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCC
Confidence                   13567778889999999999999   99999999999999999999999999999987543222111112234


Q ss_pred             ccccccC
Q 035895          521 IIGYMAP  527 (527)
Q Consensus       521 t~~y~aP  527 (527)
                      +..|+||
T Consensus       244 ~~~y~aP  250 (343)
T cd05103         244 PLKWMAP  250 (343)
T ss_pred             CcceECc
Confidence            5678888

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.84  E-value=2.1e-20  Score=181.40  Aligned_cols=140  Identities=28%  Similarity=0.490  Sum_probs=112.9

Q ss_pred             CCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~------------------------------~~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||.||+|++.    +...||||+++..                              +...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            56889999999999999999864    2457999986431                              1233456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++.+...++.+++.|++|||   +++|+||||||+||++++++.++++|||+++......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE  160 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence            9999999999999776567889999999999999999999   9999999999999999999999999999999875222


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........++..|+||
T Consensus       161 ~~~~~~~~~~~~~y~~P  177 (266)
T cd05033         161 ATYTTKGGKIPIRWTAP  177 (266)
T ss_pred             cceeccCCCCCccccCh
Confidence            21111122345678887

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.83  E-value=2.5e-20  Score=183.29  Aligned_cols=136  Identities=28%  Similarity=0.417  Sum_probs=109.5

Q ss_pred             CCccccceeccCCceEEEEEEc-c-CCcEEEEEEEeecc---------------------------------------Cc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-Q-DGMEFAIKVFHFSC---------------------------------------SN  423 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~-~~~~vavK~~~~~~---------------------------------------~~  423 (527)
                      +.|++.+.||+|+||+||+|+. . +++.||+|+++...                                       ..
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            3688999999999999999985 3 46889999874210                                       01


Q ss_pred             cceeEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      ....++||||++ |+|.+++... ...+++..+..++.|++.||+|+|   +++|+||||||+||+++.++.+|++|||+
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGL  156 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEccccc
Confidence            234679999997 5899988653 244788889999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++......   ......+|+.|+||
T Consensus       157 ~~~~~~~~---~~~~~~~~~~y~aP  178 (290)
T cd07862         157 ARIYSFQM---ALTSVVVTLWYRAP  178 (290)
T ss_pred             eEeccCCc---ccccccccccccCh
Confidence            98764321   12234578899998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.83  E-value=2.2e-20  Score=182.77  Aligned_cols=130  Identities=29%  Similarity=0.413  Sum_probs=105.7

Q ss_pred             eccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||+||+|.. .+++.||+|++..                                .+..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999986 4688999998742                                11234457899999999999


Q ss_pred             HHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          440 EKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       440 ~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ..++..   ....+++..+..++.|++.|++|+|   +++|+||||||+||++++++.++++|||+++.+.....  ...
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~  155 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTK  155 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--ccc
Confidence            988753   2345788889999999999999999   99999999999999999999999999999987643221  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...+|+.|+||
T Consensus       156 ~~~g~~~y~aP  166 (280)
T cd05608         156 GYAGTPGFMAP  166 (280)
T ss_pred             ccCCCcCccCH
Confidence            34578899998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.83  E-value=2.2e-20  Score=186.30  Aligned_cols=131  Identities=31%  Similarity=0.466  Sum_probs=107.9

Q ss_pred             ceeccCCceEEEEEEc----cCCcEEEEEEEee-------------------------------ccCccceeEEEEEecc
Q 035895          391 NLIGRGSFGSVYKARL----QDGMEFAIKVFHF-------------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~----~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~ey~~  435 (527)
                      +.||+|+||.||+++.    .+|+.||+|++..                               .+..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            6799999999999874    4688999998752                               1223456789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++.+. ..+++.....++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.......  ..
T Consensus        82 ~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~  155 (318)
T cd05582          82 GGDLFTRLSKE-VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KA  155 (318)
T ss_pred             CCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC--ce
Confidence            99999998654 35788889999999999999999   99999999999999999999999999999986543211  12


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....||+.||||
T Consensus       156 ~~~~g~~~y~aP  167 (318)
T cd05582         156 YSFCGTVEYMAP  167 (318)
T ss_pred             ecccCChhhcCH
Confidence            235678899998

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.83  E-value=3.4e-21  Score=178.02  Aligned_cols=142  Identities=28%  Similarity=0.412  Sum_probs=112.7

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc---C--CcEEEEEEEeec--------------------------------cCcc
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ---D--GMEFAIKVFHFS--------------------------------CSNE  424 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~---~--~~~vavK~~~~~--------------------------------~~~~  424 (527)
                      +....|+....||+|.||.||+|...   +  .+++|||+++..                                ...+
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            34567999999999999999999532   2  347999987532                                1234


Q ss_pred             ceeEEEEEeccCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC----CcEE
Q 035895          425 DFRALVLEYTTNGSLEKVLYSS----NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN----IVAH  496 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~----~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~----~~~k  496 (527)
                      ..+++++||++. ||.++|+-+    ...++......|..||..|+.|||   ++-|+||||||+|||+..+    |.||
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VK  176 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVK  176 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeE
Confidence            567899999986 999988643    234666677889999999999999   9999999999999999766    9999


Q ss_pred             EeecccccccCCCCCc-cceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      |+|||+||.+...-.. .+....+.|+||.||
T Consensus       177 IaDlGlaR~~~~plkpl~s~d~VVVTiWYRAP  208 (438)
T KOG0666|consen  177 IADLGLARLFNNPLKPLASLDPVVVTIWYRAP  208 (438)
T ss_pred             eecccHHHHhhccccccccCCceEEEEEecCh
Confidence            9999999998654322 233456789999998

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.83  E-value=2.9e-20  Score=184.63  Aligned_cols=138  Identities=22%  Similarity=0.424  Sum_probs=112.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|...+.||+|+||.||+|+.+ +++.||+|++...                              +..++..++|||
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   84 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFE   84 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEe
Confidence            467999999999999999999864 6788999987521                              123456689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ +|.+++...+..+++.....++.|++.||+|+|   +++|+||||||+||+++.++.+||+|||+++....... 
T Consensus        85 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-  159 (309)
T cd07872          85 YLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK-  159 (309)
T ss_pred             CCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCCcc-
Confidence            9985 888888766666788888899999999999999   99999999999999999999999999999986533221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......++..|+||
T Consensus       160 -~~~~~~~~~~y~aP  173 (309)
T cd07872         160 -TYSNEVVTLWYRPP  173 (309)
T ss_pred             -ccccccccccccCC
Confidence             11223467889998

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.83  E-value=3.6e-20  Score=189.56  Aligned_cols=138  Identities=25%  Similarity=0.250  Sum_probs=111.7

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------ccCccceeEEEEEeccCCcH
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ..+|++.+.||+|+||.||+|.. .+++.||+|....                       .+..+...++||||+. ++|
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L  169 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDL  169 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCH
Confidence            35799999999999999999985 5689999997532                       1233456789999996 689


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++... ..+++.+...++.|++.||+|+|   +++||||||||+||+++.++.+||+|||+|+....... .......
T Consensus       170 ~~~l~~~-~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~-~~~~~~~  244 (391)
T PHA03212        170 YCYLAAK-RNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA-NKYYGWA  244 (391)
T ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccc-ccccccc
Confidence            8888654 35788889999999999999999   99999999999999999999999999999976432211 1122356


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ||+.|+||
T Consensus       245 gt~~y~aP  252 (391)
T PHA03212        245 GTIATNAP  252 (391)
T ss_pred             CccCCCCh
Confidence            89999998

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.83  E-value=2.1e-20  Score=182.64  Aligned_cols=142  Identities=22%  Similarity=0.388  Sum_probs=110.7

Q ss_pred             hcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~~  426 (527)
                      ..++|++.+.||+|+||.||+|...      ++..||+|++..                              .+.....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567999999999999999998742      356799998642                              1223456


Q ss_pred             eEEEEEeccCCcHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          427 RALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                      .++||||+++|+|.+++....         ..+++.....++.+++.|++|+|   +.+++||||||+||++++++.+++
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCEEE
Confidence            789999999999999987532         12467788899999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+++...............+++.||||
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSP  190 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcCh
Confidence            999999865432221111122346779998

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.83  E-value=2.9e-20  Score=185.43  Aligned_cols=131  Identities=30%  Similarity=0.387  Sum_probs=106.9

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||+||+|+.. +++.||||++...                                 +...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            47999999999999865 5789999987521                                 1223467899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++... ..+++.+...++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.......  ...
T Consensus        81 ~~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~  154 (318)
T cd05570          81 GDLMFHIQRS-GRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--TTS  154 (318)
T ss_pred             CCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--ccc
Confidence            9999988654 35788899999999999999999   99999999999999999999999999999875322211  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||..||||
T Consensus       155 ~~~g~~~y~aP  165 (318)
T cd05570         155 TFCGTPDYIAP  165 (318)
T ss_pred             ceecCccccCH
Confidence            34578899998

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=2.2e-22  Score=191.58  Aligned_cols=269  Identities=20%  Similarity=0.221  Sum_probs=178.9

Q ss_pred             CCCceeecCchhhhcCCCCCEEEccccccccccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEccc-CCCCcc
Q 035895           28 SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISR-NPLDGF  106 (527)
Q Consensus        28 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~  106 (527)
                      .+|+|+.+++++|.++++|+.||||+|.|                  +.+.+.     +|.++++|.+|-+.+ |+|+.+
T Consensus        75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~I------------------s~I~p~-----AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKTLHRLRRLDLSKNNI------------------SFIAPD-----AFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             ccCCcccCChhhccchhhhceecccccch------------------hhcChH-----hhhhhHhhhHHHhhcCCchhhh
Confidence            45555555555555555555555555544                  443332     455555555544433 666665


Q ss_pred             cChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCccc----------
Q 035895          107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNEL----------  176 (527)
Q Consensus       107 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l----------  176 (527)
                      ....|.++. +++.|.+.-|++.-+..+.|..+++|..|.+..|.+..+...+|..+..++.+.+..|.+          
T Consensus       132 ~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla  210 (498)
T KOG4237|consen  132 PKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA  210 (498)
T ss_pred             hhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence            555555554 566666666666666666666666666666666666655555666666666666666652          


Q ss_pred             --ccccChhhhcCcccCeeeeecccCCCCCCccccCC-ccCc-eeeCCCCCCCCCch-hhhCCCCccEEEccCCcccccC
Q 035895          177 --EGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNL-TALR-NLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPL  251 (527)
Q Consensus       177 --~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~-~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~~  251 (527)
                        ....|..++......-..+.++++..+.+..|... ..+. .+....+.....|. .|..+++|+.+++++|+++..-
T Consensus       211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence              12334455555555556666666665555555432 1221 12222222333443 4667778888888888888888


Q ss_pred             CccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       252 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      +.+|..+..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|+|-.|++.
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            889999999999999999998777889999999999999999999999999999999999999988874

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.83  E-value=3.8e-20  Score=192.40  Aligned_cols=137  Identities=33%  Similarity=0.479  Sum_probs=107.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------c----CccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------C----SNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~----~~~~~~~l  429 (527)
                      .+.|++.+.||+|+||.||+|.. .+++.||||++...                             +    ....+.++
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~l  144 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNV  144 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEE
Confidence            45799999999999999999986 46899999986321                             0    01124568


Q ss_pred             EEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccc
Q 035895          430 VLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKL  505 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~  505 (527)
                      ||||+++ ++.+++..   .+..+++.....++.|++.||+|||   +++||||||||+||+++.+ +.+||+|||+|+.
T Consensus       145 vmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~  220 (440)
T PTZ00036        145 VMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKN  220 (440)
T ss_pred             EEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeeeccccchh
Confidence            9999985 67666543   3456788888899999999999999   9999999999999999965 5799999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.....   .....+|++||||
T Consensus       221 ~~~~~~---~~~~~~t~~y~aP  239 (440)
T PTZ00036        221 LLAGQR---SVSYICSRFYRAP  239 (440)
T ss_pred             ccCCCC---cccCCCCcCccCH
Confidence            643321   1234578889998

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.83  E-value=5.5e-20  Score=180.48  Aligned_cols=135  Identities=29%  Similarity=0.447  Sum_probs=111.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~ey  433 (527)
                      |+..+.||+|+||+||+|+. .+++.||+|.+..                                .+..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            67778999999999999986 4689999998742                                11234566799999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++...+ ..+++.....++.|++.|++|+|   +++|+||||||+||++++++.++++|||+++....... 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-  157 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES-  157 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc-
Confidence            99999998886543 35889999999999999999999   99999999999999999999999999999976543221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++..|+||
T Consensus       158 --~~~~~g~~~~~aP  170 (285)
T cd05632         158 --IRGRVGTVGYMAP  170 (285)
T ss_pred             --ccCCCCCcCccCh
Confidence              1234578889998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.83  E-value=1.8e-20  Score=189.76  Aligned_cols=133  Identities=29%  Similarity=0.483  Sum_probs=106.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|+..+.||+|+||.||+|+.. +++.||||++...                              +..++..++||||
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence            45777899999999999999864 6899999987421                              2234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|....     ..+......++.||+.||+|||   +++|+||||||+||++++++.+||+|||+++.+.....  
T Consensus       154 ~~~~~L~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--  223 (353)
T PLN00034        154 MDGGSLEGTH-----IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--  223 (353)
T ss_pred             CCCCcccccc-----cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccccc--
Confidence            9999986532     2455667789999999999999   99999999999999999999999999999987643221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......||..|+||
T Consensus       224 ~~~~~~gt~~y~aP  237 (353)
T PLN00034        224 PCNSSVGTIAYMSP  237 (353)
T ss_pred             cccccccCccccCc
Confidence            11234688899998

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.82  E-value=3.2e-20  Score=182.40  Aligned_cols=142  Identities=21%  Similarity=0.382  Sum_probs=109.4

Q ss_pred             hcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~~  426 (527)
                      ..++|++.+.||+|+||.||+|..+      .+..||+|.+..                              .+...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567999999999999999999643      245899997531                              1223445


Q ss_pred             eEEEEEeccCCcHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          427 RALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                      .++||||+++|+|.+++...+         ...++.....++.+++.|++|+|   +++|+||||||+||++++++.+++
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEE
Confidence            689999999999999997532         22356677889999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+++...............++..|+||
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~p  190 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCH
Confidence            999999866432221112222345678887

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=3.2e-20  Score=200.31  Aligned_cols=244  Identities=22%  Similarity=0.341  Sum_probs=192.0

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ...|+++++.+++++..++        +.|+.|+|++|+++. +|..+.   .+|+.|++++|+++. +|..+.  .+|+
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip--------~~L~~L~Ls~N~Lts-LP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~  244 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP--------EQITTLILDNNELKS-LPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQ  244 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc--------cCCcEEEecCCCCCc-CChhhc---cCCCEEECCCCcccc-CChhhh--cccc
Confidence            4679999999998776542        479999999999996 465543   479999999999985 455553  4799


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE  223 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  223 (527)
                      .|+|++|++.. +|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+
T Consensus       245 ~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        245 EMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             EEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence            99999999984 455443  58999999999998 5676554  589999999999996 455443  479999999999


Q ss_pred             CCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCC
Q 035895          224 LTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF  303 (527)
Q Consensus       224 l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  303 (527)
                      ++.+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|+++ .+|..+
T Consensus       316 Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l  386 (754)
T PRK15370        316 LTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL  386 (754)
T ss_pred             cccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence            999987553  689999999999875 666554  68999999999997 5776664  68999999999998 456655


Q ss_pred             CCCCCCCEEeCCCCcccccCccchhh----hccCCeeEeeeeee
Q 035895          304 DDLVSLESLDLSNNNLSEIIPLSLEK----LLYLNILLIVVVIL  343 (527)
Q Consensus       304 ~~l~~L~~L~ls~N~l~~~~p~~~~~----l~~L~~L~~~~~~~  343 (527)
                      .  ..|+.|++++|+++. +|..+..    ++.+..+++..+.+
T Consensus       387 ~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        387 P--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             H--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCc
Confidence            4  369999999999985 4554443    35667777776665

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.82  E-value=4.3e-20  Score=187.16  Aligned_cols=138  Identities=24%  Similarity=0.265  Sum_probs=113.4

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee-----------------------ccCccceeEEEEEeccCCc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-----------------------SCSNEDFRALVLEYTTNGS  438 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-----------------------~~~~~~~~~lv~ey~~~g~  438 (527)
                      ...+|++.+.||+|+||.||+|+.. +++.||+|+...                       .+...+..++||||+. |+
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  142 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SD  142 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-Cc
Confidence            3467999999999999999999875 578899997421                       1234456789999995 58


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecc
Q 035895          439 LEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT  518 (527)
Q Consensus       439 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  518 (527)
                      |.+++......+++..+..|+.||+.||+|||   +++||||||||+||+++.++.+||+|||+++......   .....
T Consensus       143 l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~---~~~~~  216 (357)
T PHA03209        143 LYTYLTKRSRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP---AFLGL  216 (357)
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCccccccccCc---ccccc
Confidence            98888766667899999999999999999999   9999999999999999999999999999998643221   12234


Q ss_pred             ccccccccC
Q 035895          519 LAIIGYMAP  527 (527)
Q Consensus       519 ~~t~~y~aP  527 (527)
                      .||..|+||
T Consensus       217 ~gt~~y~aP  225 (357)
T PHA03209        217 AGTVETNAP  225 (357)
T ss_pred             cccccccCC
Confidence            578899998

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.82  E-value=3.9e-20  Score=178.46  Aligned_cols=139  Identities=28%  Similarity=0.422  Sum_probs=112.3

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      .+|++.+.||+|+||.||+|+.+++..+|+|++..                            .+...+..++||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            34788899999999999999988778899998642                            12234456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ++|.+++......+++.....++.|++.|++|+|   +.+|+||||||+||++++++.+|++|||+++....... ....
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~-~~~~  159 (256)
T cd05059          84 GCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY-TSSQ  159 (256)
T ss_pred             CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccc-cccC
Confidence            9999999765556789899999999999999999   99999999999999999999999999999987643221 1111


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       160 ~~~~~~~y~~P  170 (256)
T cd05059         160 GTKFPVKWAPP  170 (256)
T ss_pred             CCCCCccccCH
Confidence            12234568887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.82  E-value=6.8e-20  Score=179.82  Aligned_cols=135  Identities=29%  Similarity=0.455  Sum_probs=110.8

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~ey  433 (527)
                      |+..+.||+|+||.||+|.. .+++.||+|.+..                                .+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            67788999999999999986 4689999998642                                11234567899999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++...+ ..++..+...++.|++.|++|+|   +++|+||||||+||++++++.++++|||++........ 
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-  157 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-  157 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc-
Confidence            99999999886433 35788889999999999999999   99999999999999999999999999999976543221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....|+..||||
T Consensus       158 --~~~~~g~~~y~aP  170 (285)
T cd05630         158 --IKGRVGTVGYMAP  170 (285)
T ss_pred             --ccCCCCCccccCh
Confidence              1234578889998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.82  E-value=4.3e-20  Score=178.61  Aligned_cols=140  Identities=21%  Similarity=0.412  Sum_probs=113.7

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|...++..||+|.+..                            .+...+..++||||++
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMA   84 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCC
Confidence            456899999999999999999988888999998642                            1233456689999999


Q ss_pred             CCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|+|.+++... +..+++.++..++.+++.|++|+|   +.+++||||||+||++++++.++++|||+++....... ..
T Consensus        85 ~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~-~~  160 (261)
T cd05072          85 KGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY-TA  160 (261)
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCCce-ec
Confidence            99999998753 345788888999999999999999   89999999999999999999999999999987643221 11


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       161 ~~~~~~~~~y~aP  173 (261)
T cd05072         161 REGAKFPIKWTAP  173 (261)
T ss_pred             cCCCccceecCCH
Confidence            1223346678887

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.82  E-value=4.9e-20  Score=185.36  Aligned_cols=137  Identities=26%  Similarity=0.379  Sum_probs=108.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------C-----ccceeE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------S-----NEDFRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~-----~~~~~~  428 (527)
                      .|++.+.||+|+||.||+|+. .+++.||||++....                               .     .....+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            378889999999999999985 478999999874210                               0     012368


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|||||. ++|.+++... ..+++.....++.|+++||+|||   +++|+||||||+||+++.++.+||+|||+++....
T Consensus        81 lv~e~~~-~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~  155 (338)
T cd07859          81 VVFELME-SDLHQVIKAN-DDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFN  155 (338)
T ss_pred             EEEecCC-CCHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccccccc
Confidence            9999996 6899888654 35788889999999999999999   99999999999999999999999999999986532


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... .......+|..|+||
T Consensus       156 ~~~~~~~~~~~~~t~~y~aP  175 (338)
T cd07859         156 DTPTAIFWTDYVATRWYRAP  175 (338)
T ss_pred             ccCccccccCCCCCCCcCCH
Confidence            2111 111234688899998

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.82  E-value=5.5e-20  Score=200.19  Aligned_cols=138  Identities=30%  Similarity=0.470  Sum_probs=113.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .++|.+.+.||+|+||.||+|+.. +++.||||+++..                                +...+..++|
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            468999999999999999999875 6899999987521                                1223567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++...+ .+++.....|+.||+.||+|||   .++||||||||+|||++.++.+||+|||+++......
T Consensus        83 mEy~~g~~L~~li~~~~-~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~~~  158 (669)
T cd05610          83 MEYLIGGDVKSLLHIYG-YFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNRE  158 (669)
T ss_pred             EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccCCc
Confidence            99999999999987543 4677888999999999999999   8999999999999999999999999999999764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......+|+.|+||
T Consensus       159 ~--~~~~~~~t~~~~~p  173 (669)
T cd05610         159 L--NMMDILTTPSMAKP  173 (669)
T ss_pred             c--cccccccCccccCc
Confidence            1  12234566777776

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.82  E-value=5.3e-20  Score=177.62  Aligned_cols=139  Identities=26%  Similarity=0.413  Sum_probs=112.6

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ++|++.+.||+|+||.||+|+..++..||+|.+..                            .+...+..++||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            46888899999999999999987777899997642                            12234456899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++......+++.+...++.+++.|++|+|   +++++||||||+||++++++.+|++|||.++...... .....
T Consensus        84 ~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~-~~~~~  159 (256)
T cd05113          84 GCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE-YTSSV  159 (256)
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCc-eeecC
Confidence            9999999765556889999999999999999999   9999999999999999999999999999998664322 11111


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       160 ~~~~~~~y~~p  170 (256)
T cd05113         160 GSKFPVRWSPP  170 (256)
T ss_pred             CCccChhhCCH
Confidence            22345668877

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.82  E-value=8.1e-20  Score=183.26  Aligned_cols=136  Identities=27%  Similarity=0.405  Sum_probs=112.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|+.. ++..||+|++...                              +..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            467999999999999999999865 6889999987531                              123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++.... .+++.....++.+++.|++|+|   +. +|+||||||+||++++++.+||+|||+++...... 
T Consensus        84 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-  158 (331)
T cd06649          84 HMDGGSLDQVLKEAK-RIPEEILGKVSIAVLRGLAYLR---EKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM-  158 (331)
T ss_pred             cCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHh---hcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccc-
Confidence            999999999987543 4678888899999999999999   64 69999999999999999999999999998664321 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....++..|+||
T Consensus       159 ---~~~~~g~~~y~aP  171 (331)
T cd06649         159 ---ANSFVGTRSYMSP  171 (331)
T ss_pred             ---cccCCCCcCcCCH
Confidence               1234578899998

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00284 protein kinase; Provisional

Probab=99.82  E-value=5.2e-20  Score=193.33  Aligned_cols=138  Identities=22%  Similarity=0.304  Sum_probs=109.6

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------c-Cc
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------C-SN  423 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~-~~  423 (527)
                      +....+.|++.+.||+|+||+||+|.. .+++.||||+++..                                  + ..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            344567899999999999999999986 46789999987420                                  0 11


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCC---------
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNI---------  493 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~---------  493 (527)
                      ....++|||++ +++|.+++.+. ..+++.....|+.||+.||+|||   + .+||||||||+|||++.++         
T Consensus       204 ~~~~~iv~~~~-g~~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~yLH---~~~gIiHrDlKP~NILl~~~~~~~~~~~~~  278 (467)
T PTZ00284        204 TGHMCIVMPKY-GPCLLDWIMKH-GPFSHRHLAQIIFQTGVALDYFH---TELHLMHTDLKPENILMETSDTVVDPVTNR  278 (467)
T ss_pred             CceEEEEEecc-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hcCCeecCCCCHHHEEEecCCccccccccc
Confidence            23567899988 67898888654 35788888999999999999999   7 5999999999999998665         


Q ss_pred             -------cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 -------VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 -------~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                             .+||+|||.+.....     ..+..+||.+||||
T Consensus       279 ~~~~~~~~vkl~DfG~~~~~~~-----~~~~~~gt~~Y~AP  314 (467)
T PTZ00284        279 ALPPDPCRVRICDLGGCCDERH-----SRTAIVSTRHYRSP  314 (467)
T ss_pred             ccCCCCceEEECCCCccccCcc-----ccccccCCccccCc
Confidence                   499999998864321     12345689999998

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.4e-20  Score=188.34  Aligned_cols=117  Identities=28%  Similarity=0.452  Sum_probs=98.0

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEe--------------------------------eccCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFH--------------------------------FSCSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~--------------------------------~~~~~~~~~~lv~e  432 (527)
                      -|-.++.||-|+||+|++++. ++...+|+|.++                                ....+++..|+|||
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            477788999999999999974 455667777542                                23456778899999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      |++|||+..+|.+.+ .++..-+..++.++..|+++.|   ..|+|||||||.|||||.+|++|++|||++.-+
T Consensus       710 YIPGGDmMSLLIrmg-IFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIRMG-IFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             ccCCccHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccCCceeeeeccccccc
Confidence            999999999987765 4565556667789999999999   999999999999999999999999999998643

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.82  E-value=7.6e-20  Score=175.94  Aligned_cols=134  Identities=27%  Similarity=0.434  Sum_probs=106.1

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEee------------------------------ccCccceeEEEEEeccCCcH
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHF------------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      +.||+|+||.||+|+. .+++.||+|.+..                              .+..++..++||||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4699999999999986 4789999997532                              12344567899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++...+..+++.....++.|++.||+|+|   +++|+||||||+||+++.++.+|++|||+++...............
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQ  157 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCC
Confidence            9999766556889899999999999999999   9999999999999999999999999999998654221111111112


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      .+..|+||
T Consensus       158 ~~~~y~aP  165 (252)
T cd05084         158 IPVKWTAP  165 (252)
T ss_pred             CceeecCc
Confidence            24568887

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.82  E-value=7.3e-21  Score=194.87  Aligned_cols=152  Identities=27%  Similarity=0.494  Sum_probs=121.6

Q ss_pred             ccccHHHHhhhcCCc---------cccceeccCCceEEEEEEcc----CCcEEEEEEEeeccC-----------------
Q 035895          373 RRFSYQELLRATDGF---------SANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCS-----------------  422 (527)
Q Consensus       373 ~~~~~~~~~~~~~~~---------~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~~~-----------------  422 (527)
                      ..++|++-.+|...|         ++.++||.|.||+||+|+++    ....||||.++....                 
T Consensus       608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF  687 (996)
T KOG0196|consen  608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF  687 (996)
T ss_pred             CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC
Confidence            455666554444433         67899999999999999975    245799999865322                 


Q ss_pred             -------------ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          423 -------------NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       423 -------------~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                                   ...-++||+|||++|+|+.+|+...+.+.+.+...+.++||.|+.||-   .++.|||||-++|||+
T Consensus       688 dHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILV  764 (996)
T KOG0196|consen  688 DHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILV  764 (996)
T ss_pred             CCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheee
Confidence                         123456899999999999999988888999999999999999999999   9999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCC-CccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGED-QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~t~~y~aP  527 (527)
                      +.+..+||+|||++|.+.++. ...+..+..-.++|.||
T Consensus       765 NsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAP  803 (996)
T KOG0196|consen  765 NSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAP  803 (996)
T ss_pred             ccceEEEeccccceeecccCCCccccccCCccceeecCh
Confidence            999999999999999875432 22222233446789998

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.82  E-value=3.5e-20  Score=179.21  Aligned_cols=141  Identities=26%  Similarity=0.473  Sum_probs=115.0

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-----------------------------cCccceeEEEEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-----------------------------CSNEDFRALVLE  432 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~e  432 (527)
                      ++..+|++.+.||+|+||.||+|...++..+|+|++...                             +...+..++|||
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            345678999999999999999999888999999986421                             233456689999


Q ss_pred             eccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++... +..+++.+...++.+++.|++|+|   +++|+||||||+||++++++.+|++|||+++.......
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~  159 (261)
T cd05148          83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVY  159 (261)
T ss_pred             ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCCccc
Confidence            99999999999764 345788899999999999999999   99999999999999999999999999999987643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......++..|+||
T Consensus       160 --~~~~~~~~~~~~~P  173 (261)
T cd05148         160 --LSSDKKIPYKWTAP  173 (261)
T ss_pred             --cccCCCCceEecCH
Confidence              11123345678887

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.82  E-value=7.6e-20  Score=176.96  Aligned_cols=140  Identities=25%  Similarity=0.407  Sum_probs=113.2

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|...+++.||+|.++..                            +...+..++||||++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence            4568899999999999999999877889999987531                            223445689999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +++|.+++.... ..+++.+...++.+++.|++|+|   +++|+||||||+||++++++.+|++|||+++....... ..
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~-~~  160 (261)
T cd05068          85 YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIY-EA  160 (261)
T ss_pred             CCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcc-cc
Confidence            999999987543 45789999999999999999999   99999999999999999999999999999987653211 11


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      ......+..|+||
T Consensus       161 ~~~~~~~~~y~aP  173 (261)
T cd05068         161 REGAKFPIKWTAP  173 (261)
T ss_pred             cCCCcCceeccCc
Confidence            1122234568888

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.82  E-value=9.5e-20  Score=189.01  Aligned_cols=141  Identities=23%  Similarity=0.337  Sum_probs=108.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-----------------cCCcEEEEEEEeec-------------------------
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-----------------QDGMEFAIKVFHFS-------------------------  420 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-----------------~~~~~vavK~~~~~-------------------------  420 (527)
                      ..++|++.++||+|+||+||+|..                 ..++.||||++...                         
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            356899999999999999999963                 23568999986421                         


Q ss_pred             ----------------c---------------CccceeEEEEEeccCCcHHHHHHhcC----------------------
Q 035895          421 ----------------C---------------SNEDFRALVLEYTTNGSLEKVLYSSN----------------------  447 (527)
Q Consensus       421 ----------------~---------------~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------  447 (527)
                                      |               ..++..++||||+++|+|.++++...                      
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence                            0               01234689999999999999886421                      


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecccccccccc
Q 035895          448 -YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA  526 (527)
Q Consensus       448 -~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a  526 (527)
                       ...++.....++.+++.+++|+|   +.+|+||||||+||+++.++.+|++|||+++....... .......+++.|+|
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~-~~~~~g~~tp~Y~a  378 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGIN-FNPLYGMLDPRYSP  378 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCc-cCccccCCCcceeC
Confidence             12356677889999999999999   89999999999999999999999999999976543221 11112234678999


Q ss_pred             C
Q 035895          527 P  527 (527)
Q Consensus       527 P  527 (527)
                      |
T Consensus       379 P  379 (507)
T PLN03224        379 P  379 (507)
T ss_pred             h
Confidence            8

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.82  E-value=8.2e-20  Score=183.33  Aligned_cols=136  Identities=27%  Similarity=0.423  Sum_probs=111.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|... ++..+|+|.+..                              .+...+..++|||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            367999999999999999999875 688899998642                              1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++...+ .+++.....++.+++.|++|+|   + .+|+||||||+||++++++.+|++|||+++...... 
T Consensus        84 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH---~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~-  158 (333)
T cd06650          84 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM-  158 (333)
T ss_pred             cCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc-
Confidence            999999999987543 4677788899999999999999   5 479999999999999999999999999998653221 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....++..|+||
T Consensus       159 ---~~~~~~~~~y~aP  171 (333)
T cd06650         159 ---ANSFVGTRSYMSP  171 (333)
T ss_pred             ---cccCCCCccccCH
Confidence               1234578889998

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.82  E-value=4.3e-20  Score=185.77  Aligned_cols=140  Identities=30%  Similarity=0.403  Sum_probs=118.5

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------CccceeE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------SNEDFRA  428 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~~~~~~~  428 (527)
                      ...+..|.+.+.||+|.|+.|..|++ .++..||||.++..+                               ..+...+
T Consensus        52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~ly  131 (596)
T KOG0586|consen   52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLY  131 (596)
T ss_pred             cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeE
Confidence            44577899999999999999999986 468999999885421                               2345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+.+|++++++.+.+...+ ..+..++.|+..|++|+|   ++.|||||||++||+++.+..+||+|||++..+..
T Consensus       132 lV~eya~~ge~~~yl~~~gr~~e-~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~  207 (596)
T KOG0586|consen  132 LVMEYASGGELFDYLVKHGRMKE-KEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFSTFFDY  207 (596)
T ss_pred             EEEEeccCchhHHHHHhcccchh-hhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccceeeeccccceeecc
Confidence            99999999999999988765555 667778999999999999   99999999999999999999999999999998864


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   ....+|++.|.||
T Consensus       208 ~~~---lqt~cgsppyAaP  223 (596)
T KOG0586|consen  208 GLM---LQTFCGSPPYAAP  223 (596)
T ss_pred             ccc---ccccCCCCCccCh
Confidence            322   2236799999998

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.82  E-value=7.5e-20  Score=181.24  Aligned_cols=141  Identities=26%  Similarity=0.452  Sum_probs=109.8

Q ss_pred             cCCccccceeccCCceEEEEEEc--------cCCcEEEEEEEeec-------------------------------cCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL--------QDGMEFAIKVFHFS-------------------------------CSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~--------~~~~~vavK~~~~~-------------------------------~~~~  424 (527)
                      .++|++.+.||+|+||.||+|+.        .++..||+|.+...                               +..+
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45688899999999999999973        13457999986421                               1223


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      ...++||||+++|+|.+++....               ..+++.+...++.|++.|++|||   +++|+||||||+||++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili  170 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLV  170 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEE
Confidence            45679999999999999987532               24677888999999999999999   9999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++++.+|++|||+++...............++..|+||
T Consensus       171 ~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aP  208 (304)
T cd05101         171 TENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAP  208 (304)
T ss_pred             cCCCcEEECCCccceecccccccccccCCCCCceeeCc
Confidence            99999999999999876432221111222345679988

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.82  E-value=1.3e-19  Score=177.70  Aligned_cols=140  Identities=29%  Similarity=0.421  Sum_probs=110.8

Q ss_pred             CCccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec-----------------------------c--CccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS-----------------------------C--SNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~-----------------------------~--~~~~~~~  428 (527)
                      .+|++.+.||+|+||.||+|..     .+++.||+|.+...                             +  ......+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            4688899999999999999974     35789999987421                             0  1123567


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++......+++..+..++.+++.||+|||   +++|+||||||+||++++++.+|++|||+++....
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence            999999999999999765556889999999999999999999   99999999999999999999999999999987653


Q ss_pred             CCCccc-eeccccccccccC
Q 035895          509 EDQSMT-QTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~-~~~~~~t~~y~aP  527 (527)
                      ...... .....++..|+||
T Consensus       161 ~~~~~~~~~~~~~~~~y~aP  180 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAP  180 (284)
T ss_pred             CCcceeecCCCCCceEeeCH
Confidence            322111 1112233458887

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.82  E-value=7.5e-20  Score=177.18  Aligned_cols=140  Identities=25%  Similarity=0.451  Sum_probs=112.6

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .+.|++.+.||+|+||.||+|+..++..||+|++...                           ...++..++||||+++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~   84 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK   84 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCC
Confidence            3568999999999999999999877778999987531                           0123456799999999


Q ss_pred             CcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |+|.+++... +..+++..+..++.+++.||+|+|   +.+|+||||||+||++++++.++++|||.++.+...... ..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~  160 (262)
T cd05071          85 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-AR  160 (262)
T ss_pred             CcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cc
Confidence            9999999753 345788899999999999999999   999999999999999999999999999999876433211 11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       161 ~~~~~~~~y~~P  172 (262)
T cd05071         161 QGAKFPIKWTAP  172 (262)
T ss_pred             cCCcccceecCH
Confidence            123356678887

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.82  E-value=7.5e-20  Score=179.25  Aligned_cols=140  Identities=27%  Similarity=0.441  Sum_probs=110.0

Q ss_pred             CCccccceeccCCceEEEEEEc-----cCCcEEEEEEEee------------------------------ccCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHF------------------------------SCSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~------------------------------~~~~~~~~~l  429 (527)
                      ++|++.+.||+|+||.||+|+.     .++..||+|.+..                              .+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            5688889999999999999974     3567899998742                              0123345689


Q ss_pred             EEEeccCCcHHHHHHhcC----------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC
Q 035895          430 VLEYTTNGSLEKVLYSSN----------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI  493 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~----------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~  493 (527)
                      ||||+++|+|.+++....                ..+++.+...++.+++.|++|+|   +++|+||||||+||++++++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCC
Confidence            999999999999985321                23678888899999999999999   89999999999999999999


Q ss_pred             cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+|++|||+++...............++..|+||
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPP  195 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecCh
Confidence            9999999999876433222222233356678887

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.82  E-value=7.5e-20  Score=187.34  Aligned_cols=141  Identities=24%  Similarity=0.449  Sum_probs=109.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee-------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF-------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~-------------------------------~~~~~~~  426 (527)
                      .++|.+.+.||+|+||.||+|+++      .++.||+|++..                               .+..++.
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~  115 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP  115 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence            345778899999999999999853      346899998742                               1223345


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------------------------------------------
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------------------------------------------  447 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------------------------  447 (527)
                      .++|||||++|+|.++++..+                                                           
T Consensus       116 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (401)
T cd05107         116 IYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDM  195 (401)
T ss_pred             cEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcc
Confidence            689999999999999986421                                                           


Q ss_pred             --------------------------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          448 --------------------------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       448 --------------------------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                                                            ..+++.+...++.+++.||+|+|   +++|+||||||+||++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl  272 (401)
T cd05107         196 KGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLI  272 (401)
T ss_pred             hhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEE
Confidence                                                  12566777889999999999999   8999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++++.+|++|||+++...............++..||||
T Consensus       273 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aP  310 (401)
T cd05107         273 CEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAP  310 (401)
T ss_pred             eCCCEEEEEecCcceecccccccccCCCcCCCCceeCh
Confidence            99999999999999865332211111223456789987

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.81  E-value=1.4e-19  Score=176.86  Aligned_cols=129  Identities=32%  Similarity=0.484  Sum_probs=105.6

Q ss_pred             eccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||.||+|+. .+|+.||+|++..                                .+..+...++||||++||+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            79999999999986 4689999998742                                11234567899999999999


Q ss_pred             HHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecc
Q 035895          440 EKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT  518 (527)
Q Consensus       440 ~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  518 (527)
                      .+++...+ ..+++.....++.|++.|++|+|   +++|+||||||+||++++++.++|+|||++.......   .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~~  154 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK---TITQR  154 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc---eeecc
Confidence            98876533 35788888899999999999999   9999999999999999999999999999998764322   12234


Q ss_pred             ccccccccC
Q 035895          519 LAIIGYMAP  527 (527)
Q Consensus       519 ~~t~~y~aP  527 (527)
                      .++..|+||
T Consensus       155 ~~~~~y~aP  163 (277)
T cd05607         155 AGTNGYMAP  163 (277)
T ss_pred             CCCCCccCH
Confidence            578889998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.81  E-value=6.7e-20  Score=176.92  Aligned_cols=135  Identities=36%  Similarity=0.569  Sum_probs=110.9

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      |++.+.||+|+||+||+|+.. +++.||+|++...                               ...++..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            677899999999999999975 5678999997531                               11345677999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++++|.+++.. ...+++..+..++.++++||+|||   +.+|+||||||+||++++++.++++|||.+.......  ..
T Consensus        81 ~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~--~~  154 (260)
T PF00069_consen   81 PGGSLQDYLQK-NKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENN--EN  154 (260)
T ss_dssp             TTEBHHHHHHH-HSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTT--SE
T ss_pred             ccccccccccc-cccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc--cc
Confidence            99999999973 345788899999999999999999   8999999999999999999999999999997642111  12


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       155 ~~~~~~~~~y~aP  167 (260)
T PF00069_consen  155 FNPFVGTPEYMAP  167 (260)
T ss_dssp             BSSSSSSGGGSCH
T ss_pred             ccccccccccccc
Confidence            2345578889988

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.81  E-value=7.6e-20  Score=180.41  Aligned_cols=140  Identities=25%  Similarity=0.429  Sum_probs=108.6

Q ss_pred             CCccccceeccCCceEEEEEEccC---------------CcEEEEEEEeec-----------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD---------------GMEFAIKVFHFS-----------------------------  420 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~---------------~~~vavK~~~~~-----------------------------  420 (527)
                      ++|++.+.||+|+||.||+|+...               ...||+|+++..                             
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            468899999999999999987532               235899987431                             


Q ss_pred             -cCccceeEEEEEeccCCcHHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCee
Q 035895          421 -CSNEDFRALVLEYTTNGSLEKVLYSSN-----------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL  488 (527)
Q Consensus       421 -~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nil  488 (527)
                       +...+..++||||+++++|.+++....           ..+++.+...++.+++.|++|||   +.+++||||||+||+
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil  161 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNCL  161 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhEE
Confidence             223456679999999999999986432           13578888999999999999999   999999999999999


Q ss_pred             eCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       489 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++++.+|++|||+++...............++..|+||
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  200 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAW  200 (295)
T ss_pred             EcCCCcEEecccccccccccCcceeccCcCcCceeecCh
Confidence            999999999999999865433221111223346679887

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.81  E-value=1.2e-19  Score=178.00  Aligned_cols=139  Identities=24%  Similarity=0.432  Sum_probs=110.8

Q ss_pred             CccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec------------------------------cCc--cceeE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS------------------------------CSN--EDFRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~------------------------------~~~--~~~~~  428 (527)
                      -|++.+.||+|+||.||+|+.     .++..||+|.++..                              +..  ....+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            468889999999999999973     35788999987421                              111  24568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++||+|.+++......+++.++..++.+++.||+|+|   +++|+||||||+||+++.++.++++|||+++.+..
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            999999999999998765556789999999999999999999   99999999999999999999999999999987653


Q ss_pred             CCCccc-eeccccccccccC
Q 035895          509 EDQSMT-QTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~-~~~~~~t~~y~aP  527 (527)
                      ...... .....++..|+||
T Consensus       162 ~~~~~~~~~~~~~~~~y~ap  181 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAP  181 (284)
T ss_pred             CccceeecCCCCCCccccCH
Confidence            322111 1123355668887

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.81  E-value=9.4e-20  Score=179.07  Aligned_cols=140  Identities=29%  Similarity=0.470  Sum_probs=111.0

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEee-----------------------------ccCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF-----------------------------SCSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~-----------------------------~~~~~~~~~l  429 (527)
                      .+|.+.+.||+|+||.||+|..      .++..+|+|.+..                             .+...+..++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            4688899999999999999974      2356689998642                             1234456789


Q ss_pred             EEEeccCCcHHHHHHhcC------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          430 VLEYTTNGSLEKVLYSSN------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                      ||||+++|+|.+++...+            ..+++.+...++.|++.||+|+|   +++++||||||+||++++++.+|+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl  161 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI  161 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEe
Confidence            999999999999987533            23788899999999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+++...............++..|+||
T Consensus       162 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  191 (288)
T cd05093         162 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  191 (288)
T ss_pred             ccCCccccccCCceeecCCCCCccccccCH
Confidence            999999876433221112223356779998

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.81  E-value=9.4e-20  Score=178.47  Aligned_cols=140  Identities=29%  Similarity=0.535  Sum_probs=110.6

Q ss_pred             CCccccceeccCCceEEEEEEccC------CcEEEEEEEeec------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD------GMEFAIKVFHFS------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~------~~~vavK~~~~~------------------------------~~~~~~~~  428 (527)
                      ++|++.+.||+|+||.||+|....      ...||+|.+...                              +...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            468889999999999999998532      257999987421                              12334567


Q ss_pred             EEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC
Q 035895          429 LVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI  493 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~  493 (527)
                      ++|||+++|+|.+++....               ..+++.+...++.|++.|++|||   +.+|+||||||+||++++++
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~  161 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGL  161 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCC
Confidence            9999999999999986531               34677888899999999999999   99999999999999999999


Q ss_pred             cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+||+|||+++...............+++.||||
T Consensus       162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05048         162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPP  195 (283)
T ss_pred             cEEECCCcceeeccccccccccCCCcccccccCH
Confidence            9999999999865433222222234457789998

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.81  E-value=1.3e-19  Score=177.29  Aligned_cols=128  Identities=29%  Similarity=0.470  Sum_probs=105.1

Q ss_pred             eeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeEEEEEecc
Q 035895          392 LIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~lv~ey~~  435 (527)
                      .||+|+||.||+|+. .+++.||+|.+...                                   +..++..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999986 46889999976421                                   112345679999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++...+ .+++.....++.|++.|++|+|   +.+|+||||||+||++++++.++++|||+++......    .
T Consensus        81 ~~~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~----~  152 (279)
T cd05633          81 GGDLHYHLSQHG-VFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----P  152 (279)
T ss_pred             CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC----c
Confidence            999999887543 5788899999999999999999   9999999999999999999999999999987654221    1


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..||||
T Consensus       153 ~~~~~~~~y~aP  164 (279)
T cd05633         153 HASVGTHGYMAP  164 (279)
T ss_pred             cCcCCCcCccCH
Confidence            223578889998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.81  E-value=1.1e-19  Score=176.77  Aligned_cols=134  Identities=26%  Similarity=0.359  Sum_probs=102.3

Q ss_pred             ceeccCCceEEEEEEccC---CcEEEEEEEee------------------------------ccCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQD---GMEFAIKVFHF------------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~---~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|....   ...+|+|.+..                              .+...+..++||||+++|
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            368999999999997533   35688886532                              123345678999999999


Q ss_pred             cHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          438 SLEKVLYSSNY----ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       438 ~L~~~l~~~~~----~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +|.+++.....    ..++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  157 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYI  157 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccccccchhee
Confidence            99999876432    2456677889999999999999   9999999999999999999999999999987653322211


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       158 ~~~~~~~~~~y~aP  171 (269)
T cd05042         158 TKDCHAVPLRWLAP  171 (269)
T ss_pred             ccCCCCCcccccCH
Confidence            22223356678887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-21  Score=174.78  Aligned_cols=137  Identities=29%  Similarity=0.494  Sum_probs=109.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-------------------------------ccCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~  431 (527)
                      .+.|++-++||+|.|+.||+... .+|+.+|+|.+..                               ..+.+.+.++|+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            35688889999999999999864 5788888887531                               234567889999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      |+|+||+|..-|-.. ...+...+--++.||+++|.|+|   .++|||||+||+|+++..   ..-+|++|||+|..+.+
T Consensus        90 e~m~G~dl~~eIV~R-~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~  165 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAR-EFYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND  165 (355)
T ss_pred             ecccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceEEEeCC
Confidence            999999997655433 34556666678899999999999   999999999999999963   35689999999998863


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.   ...+.+||++||||
T Consensus       166 g~---~~~G~~GtP~fmaP  181 (355)
T KOG0033|consen  166 GE---AWHGFAGTPGYLSP  181 (355)
T ss_pred             cc---ccccccCCCcccCH
Confidence            22   23457899999998

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.81  E-value=6.1e-20  Score=192.27  Aligned_cols=142  Identities=27%  Similarity=0.365  Sum_probs=109.8

Q ss_pred             CCccccceeccCCceEEEEEEccCC-cEEEEEEEeec---------------------------cC-------c---cce
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDG-MEFAIKVFHFS---------------------------CS-------N---EDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~-~~vavK~~~~~---------------------------~~-------~---~~~  426 (527)
                      -.+++.++|.||||+.||.|+...+ ..||+|++...                           +.       .   .-+
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence            3467889999999999999997655 99999986320                           10       1   124


Q ss_pred             eEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +.|.||||.||.|-+++... ...+...+.++|+.++++|+++||+. .++|||||||.||||+..++..|+||||-|..
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            56899999999999999753 34488999999999999999999944 78899999999999999999999999999864


Q ss_pred             cCCCC-Cc----cc--eeccccccccccC
Q 035895          506 LTGED-QS----MT--QTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~-~~----~~--~~~~~~t~~y~aP  527 (527)
                      ..... ..    ..  .-....|+-|+||
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsP  224 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSP  224 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccCh
Confidence            32111 10    00  0123357889998

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.81  E-value=9.3e-20  Score=180.85  Aligned_cols=140  Identities=26%  Similarity=0.424  Sum_probs=109.1

Q ss_pred             CCccccceeccCCceEEEEEEcc--------CCcEEEEEEEeec-------------------------------cCccc
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHFS-------------------------------CSNED  425 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~~-------------------------------~~~~~  425 (527)
                      ++|.+.+.||+|+||.||+|+..        +...+|+|.+...                               +...+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            56899999999999999999742        2357999987521                               12234


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                      ..++||||+++|+|.+++....               ..+++.+...++.|++.||+|+|   +++++||||||+||+++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~  174 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVT  174 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEc
Confidence            5679999999999999997532               24788889999999999999999   99999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+|++|||+++...............++..||||
T Consensus       175 ~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  211 (307)
T cd05098         175 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  211 (307)
T ss_pred             CCCcEEECCCcccccccccchhhccccCCCccceeCh
Confidence            9999999999999866432111111112234679988

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.81  E-value=8.6e-20  Score=181.58  Aligned_cols=136  Identities=21%  Similarity=0.215  Sum_probs=101.6

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc--CCcEEEEEEEeecc-------------------------------Ccccee
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ--DGMEFAIKVFHFSC-------------------------------SNEDFR  427 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~--~~~~vavK~~~~~~-------------------------------~~~~~~  427 (527)
                      ....++|.+.+.||+|+||+||+|+.+  +++.||||++....                               ...+..
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~   93 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKD   93 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence            344677999999999999999999864  57788999853110                               011245


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCC-CCCCeeeCCCCcEEEeeccccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL-KPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ++||||++|++|... ...    .   ...++.+++++|+|+|   +++|+|||| ||+|||++.++.+||+|||+|+.+
T Consensus        94 ~LVmE~~~G~~L~~~-~~~----~---~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188         94 GLVRGWTEGVPLHLA-RPH----G---DPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             EEEEEccCCCCHHHh-Ccc----c---hHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            799999999999732 111    1   1357789999999999   999999999 999999999999999999999977


Q ss_pred             CCCCCccc------eeccccccccccC
Q 035895          507 TGEDQSMT------QTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~------~~~~~~t~~y~aP  527 (527)
                      ........      -+...+++.|+||
T Consensus       163 ~~~~~~~~~~~~~d~~~~~~~~~~~~p  189 (365)
T PRK09188        163 RRRGALYRIAAYEDLRHLLKHKRTYAP  189 (365)
T ss_pred             ccCcchhhhhhhhhhhhhhccCccCCc
Confidence            54321111      1234466778877

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.81  E-value=1.4e-19  Score=175.01  Aligned_cols=140  Identities=24%  Similarity=0.446  Sum_probs=112.9

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .++|++.+.||+|+||.||+|...++..||+|.+...                           ...++..++||||+++
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~   84 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSK   84 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCC
Confidence            3568899999999999999999888889999987531                           1123456799999999


Q ss_pred             CcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |+|.+++... ...+++.++..++.+++.|++|+|   +++|+||||||+||++++++.++++|||+++.+..... ...
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~-~~~  160 (260)
T cd05070          85 GSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY-TAR  160 (260)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCccc-ccc
Confidence            9999998754 245788899999999999999999   89999999999999999999999999999987643221 111


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       161 ~~~~~~~~y~aP  172 (260)
T cd05070         161 QGAKFPIKWTAP  172 (260)
T ss_pred             cCCCCCccccCh
Confidence            122345679988

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.81  E-value=4.5e-20  Score=199.18  Aligned_cols=138  Identities=29%  Similarity=0.531  Sum_probs=112.4

Q ss_pred             ccccceeccCCceEEEEEEccC--C----cEEEEEEEeec------------------------------cCccceeEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQD--G----MEFAIKVFHFS------------------------------CSNEDFRALV  430 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~--~----~~vavK~~~~~------------------------------~~~~~~~~lv  430 (527)
                      -+..+.||+|+||.||+|...+  |    ..||||.+...                              |-....++|+
T Consensus       694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~  773 (1025)
T KOG1095|consen  694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLIL  773 (1025)
T ss_pred             eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEE
Confidence            4567899999999999998643  3    34999987543                              2234566799


Q ss_pred             EEeccCCcHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          431 LEYTTNGSLEKVLYSS------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +|||+||||..+|++.      ...+...+.+.++.+||+|+.||+   ++++|||||-++|+|+++...|||+|||+||
T Consensus       774 leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr  850 (1025)
T KOG1095|consen  774 LEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLAR  850 (1025)
T ss_pred             ehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhH
Confidence            9999999999999976      556888999999999999999999   9999999999999999999999999999999


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+-+.+.+.......-...||||
T Consensus       851 Diy~~~yyr~~~~a~lPvkWm~P  873 (1025)
T KOG1095|consen  851 DIYDKDYYRKHGEAMLPVKWMPP  873 (1025)
T ss_pred             hhhhchheeccCccccceecCCH
Confidence            65544433333332345689998

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.81  E-value=1.1e-19  Score=179.00  Aligned_cols=142  Identities=27%  Similarity=0.440  Sum_probs=111.0

Q ss_pred             hcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec-------------------------------cCccc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS-------------------------------CSNED  425 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~-------------------------------~~~~~  425 (527)
                      ..++|+..+.||+|+||.||+|...      ....||+|.+...                               +..++
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            3456888999999999999999853      2367999986431                               12234


Q ss_pred             eeEEEEEeccCCcHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          426 FRALVLEYTTNGSLEKVLYSS---------------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                      ..++||||+++|+|.+++...               ...+++.....++.|++.|++|||   +++|+||||||+||+++
T Consensus        90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~  166 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVT  166 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEc
Confidence            567999999999999998642               235788889999999999999999   99999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+|++|||+++.+.............++..|+||
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  203 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAP  203 (293)
T ss_pred             CCCeEEeCccccccccccccceeccCCCCCCccccCH
Confidence            9999999999999876543221111222345678887

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.81  E-value=1.8e-19  Score=175.26  Aligned_cols=134  Identities=25%  Similarity=0.385  Sum_probs=103.7

Q ss_pred             ceeccCCceEEEEEEcc---CCcEEEEEEEee------------------------------ccCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQ---DGMEFAIKVFHF------------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~---~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|...   ++..+|+|.++.                              .+.+....++||||+++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            46899999999999754   346789998642                              122334567999999999


Q ss_pred             cHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          438 SLEKVLYSSN----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       438 ~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +|.+++....    ...++.....++.|++.|++|+|   +++++||||||+||++++++.+|++|||+++.........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~  157 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYV  157 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccccCcceee
Confidence            9999987532    23466677789999999999999   9999999999999999999999999999997654332222


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       158 ~~~~~~~~~~y~aP  171 (269)
T cd05087         158 TPDQLWVPLRWIAP  171 (269)
T ss_pred             cCCCcCCcccccCH
Confidence            22234467789988

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-20  Score=185.26  Aligned_cols=138  Identities=26%  Similarity=0.452  Sum_probs=116.7

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEEee------------------------------ccCccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF------------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ..+.++||+|.||+|..+....+..||||+++.                              .|..++-.++|||||++
T Consensus       540 L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEn  619 (807)
T KOG1094|consen  540 LRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMEN  619 (807)
T ss_pred             eehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhc
Confidence            456789999999999999998889999999864                              24445566789999999


Q ss_pred             CcHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSSNYIL-DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~~~~~-~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |+|.+++.+.+... +-...+.|+.|||.|++||.   +.++||||+.++|+|+|.++++||+|||++|.+-..+.+..+
T Consensus       620 GDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vq  696 (807)
T KOG1094|consen  620 GDLNQFLSAHELPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQ  696 (807)
T ss_pred             CcHHHHHHhccCcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCCceeee
Confidence            99999998765433 55567789999999999999   999999999999999999999999999999977655555555


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ...+-.+.||||
T Consensus       697 gr~vlpiRwmaw  708 (807)
T KOG1094|consen  697 GRAVLPIRWMAW  708 (807)
T ss_pred             cceeeeeeehhH
Confidence            566677899996

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.81  E-value=1.9e-19  Score=183.66  Aligned_cols=136  Identities=29%  Similarity=0.416  Sum_probs=108.6

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccc-----eeE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNED-----FRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~-----~~~  428 (527)
                      +|+..+.||+|+||.||+|+. .+++.||||++...                               +..++     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478889999999999999986 57899999986321                               11122     578


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+. ++|.+.+... ..+++.....++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus        81 lv~e~~~-~~l~~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSP-QPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEP  155 (372)
T ss_pred             EEeeccc-cCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEeccccceeeccc
Confidence            9999997 5788877543 45788889999999999999999   99999999999999999999999999999987543


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ... ...+...++.+|+||
T Consensus       156 ~~~-~~~~~~~~~~~y~aP  173 (372)
T cd07853         156 DES-KHMTQEVVTQYYRAP  173 (372)
T ss_pred             Ccc-ccCCCCCcCCCcCCH
Confidence            221 112234567889998

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=3.2e-20  Score=198.68  Aligned_cols=98  Identities=26%  Similarity=0.425  Sum_probs=78.4

Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .||-||||+.-.++++++.....-......+++.+|++||+|+|   +++||||||||.||++|++..|||+|||+|...
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~  747 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDL  747 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH---hCceeeccCCcceeEEcCCCCeeecccccchhh
Confidence            36889999998888888654332245556789999999999999   999999999999999999999999999999872


Q ss_pred             C------C----------CCCccceeccccccccccC
Q 035895          507 T------G----------EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~------~----------~~~~~~~~~~~~t~~y~aP  527 (527)
                      .      .          .......|+.+||.-|+||
T Consensus       748 ~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAP  784 (1351)
T KOG1035|consen  748 KENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAP  784 (1351)
T ss_pred             hhhhhhHhhccCccccccCCCCcccccccceeeeecH
Confidence            1      0          0011234667899999999

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.81  E-value=1.8e-19  Score=175.02  Aligned_cols=140  Identities=27%  Similarity=0.482  Sum_probs=111.3

Q ss_pred             CCccccceeccCCceEEEEEEcc----CCcEEEEEEEee------------------------------ccCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHF------------------------------SCSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~------------------------------~~~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||.||+|+..    ++..+|+|.+..                              .+..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            46888999999999999999863    234799998642                              12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++.+...++.+++.|++|+|   +.+++||||||+||+++.++.++++|||+++.+....
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  160 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence            9999999999999876666889899999999999999999   9999999999999999999999999999998765432


Q ss_pred             Cccc-eeccccccccccC
Q 035895          511 QSMT-QTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~-~~~~~~t~~y~aP  527 (527)
                      .... .....++..|+||
T Consensus       161 ~~~~~~~~~~~~~~y~~p  178 (267)
T cd05066         161 EAAYTTRGGKIPIRWTAP  178 (267)
T ss_pred             ceeeecCCCccceeecCH
Confidence            2111 1112234568887

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.80  E-value=1.7e-19  Score=176.31  Aligned_cols=141  Identities=29%  Similarity=0.468  Sum_probs=110.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|.+.+.||+|+||.||+|+..      +++.||||.+...                              +......
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            356888999999999999999863      3478999987431                              1223456


Q ss_pred             EEEEEeccCCcHHHHHHhcC-------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc
Q 035895          428 ALVLEYTTNGSLEKVLYSSN-------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~-------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~  494 (527)
                      ++||||+++|+|.+++...+             ..+++.+...++.+++.|++|+|   +++++||||||+||+++.++.
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~  160 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLV  160 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCe
Confidence            89999999999999997542             23677788899999999999999   999999999999999999999


Q ss_pred             EEEeecccccccCCCCCccceeccccccccccC
Q 035895          495 AHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|++|||+++...............+++.|+||
T Consensus       161 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05049         161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPP  193 (280)
T ss_pred             EEECCcccceecccCcceecCCCCcccceecCh
Confidence            999999999865332221112223356779998

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.80  E-value=2.4e-19  Score=172.12  Aligned_cols=133  Identities=29%  Similarity=0.452  Sum_probs=107.1

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCccceeEEEEEeccCCcHH
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNEDFRALVLEYTTNGSLE  440 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~~g~L~  440 (527)
                      ++||+|+||.||+|..+++..||+|.++..                              +...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            479999999999999888899999986421                              22344668999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecccc
Q 035895          441 KVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA  520 (527)
Q Consensus       441 ~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  520 (527)
                      +++......+++.....++.+++.|+.|+|   +++++||||||+||++++++.+|++|||+++........ ......+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~  156 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS-SSGLKQI  156 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccc-cCCCCCC
Confidence            998765556789999999999999999999   999999999999999999999999999999765322111 1111223


Q ss_pred             ccccccC
Q 035895          521 IIGYMAP  527 (527)
Q Consensus       521 t~~y~aP  527 (527)
                      +..|+||
T Consensus       157 ~~~y~aP  163 (250)
T cd05085         157 PIKWTAP  163 (250)
T ss_pred             cccccCH
Confidence            5568887

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.80  E-value=1.3e-19  Score=185.92  Aligned_cols=139  Identities=22%  Similarity=0.215  Sum_probs=111.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc---CCcEEEEEEEee------------------------ccCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ---DGMEFAIKVFHF------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~---~~~~vavK~~~~------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ...|++.+.||+|+||.||+|...   .++.||+|.+..                        .+..+...++||||+. 
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  169 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-  169 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-
Confidence            356999999999999999999753   467899998632                        1223456789999996 


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ++|.+++.. ...+++.++..++.|++.||+|||   +++||||||||+||+++.++.++|+|||+++............
T Consensus       170 ~~l~~~l~~-~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~  245 (392)
T PHA03207        170 CDLFTYVDR-SGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCY  245 (392)
T ss_pred             CCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCccccccCccccccccc
Confidence            688888843 356789999999999999999999   9999999999999999999999999999998765432222223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.|+||
T Consensus       246 ~~~gt~~y~aP  256 (392)
T PHA03207        246 GWSGTLETNSP  256 (392)
T ss_pred             ccccccCccCH
Confidence            45689999998

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.80  E-value=2.3e-19  Score=174.17  Aligned_cols=137  Identities=30%  Similarity=0.432  Sum_probs=112.0

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||+|++...                             +..++..++||||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4699999999999999999986 57889999987531                             12345668999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++... ..+++.+...++.|++.|++|+|   +.+|+|||+||+||++++++.++++|||+++.......  .
T Consensus        89 ~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~  162 (267)
T cd06646          89 GGGSLQDIYHVT-GPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA--K  162 (267)
T ss_pred             CCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeeccccc--c
Confidence            999999988654 35688888999999999999999   99999999999999999999999999999986642211  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       163 ~~~~~~~~~y~~P  175 (267)
T cd06646         163 RKSFIGTPYWMAP  175 (267)
T ss_pred             cCccccCccccCH
Confidence            1223467788887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.80  E-value=1.8e-19  Score=187.30  Aligned_cols=148  Identities=29%  Similarity=0.415  Sum_probs=122.9

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc--------------------------------
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC--------------------------------  421 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~--------------------------------  421 (527)
                      ..++.+...++.|++.++||.|.+|.||+++. ++++.+|+|+++...                                
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            44555666678899999999999999999984 678899999875321                                


Q ss_pred             --CccceeEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          422 --SNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       422 --~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                        ...++.++|||||.||+..+++.+- +..++|.....|+.++++|+.+||   ...++|||+|-.|||++.++.+|+.
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLv  165 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLV  165 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEe
Confidence              1245778999999999999998753 456888888999999999999999   9999999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.++...  .......||+.||||
T Consensus       166 DFGvSaQldsT~--grRnT~iGtP~WMAP  192 (953)
T KOG0587|consen  166 DFGVSAQLDSTV--GRRNTFIGTPYWMAP  192 (953)
T ss_pred             eeeeeeeeeccc--ccccCcCCCcccccc
Confidence            999999875332  222345799999998

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.80  E-value=2.4e-19  Score=175.29  Aligned_cols=140  Identities=24%  Similarity=0.381  Sum_probs=110.3

Q ss_pred             CCccccceeccCCceEEEEEEcc-CC----cEEEEEEEeecc-----------------------------CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DG----MEFAIKVFHFSC-----------------------------SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~----~~vavK~~~~~~-----------------------------~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||.||+|... +|    ..||+|++....                             ......++|
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v   86 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLI   86 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEE
Confidence            56888899999999999999864 33    358999864211                             011456799


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++......
T Consensus        87 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          87 TQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             EecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence            9999999999999876666889999999999999999999   8999999999999999999999999999998765332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........++..|+||
T Consensus       164 ~~~~~~~~~~~~~y~~P  180 (279)
T cd05057         164 KEYHAEGGKVPIKWMAL  180 (279)
T ss_pred             cceecCCCcccccccCH
Confidence            22211122235678887

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.80  E-value=2.1e-19  Score=177.14  Aligned_cols=141  Identities=26%  Similarity=0.389  Sum_probs=111.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-----------------CCcEEEEEEEeec--------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-----------------DGMEFAIKVFHFS--------------------------  420 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-----------------~~~~vavK~~~~~--------------------------  420 (527)
                      .++|++.+.||+|+||.||+|...                 .+..||+|++...                          
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            457899999999999999998753                 2346899987421                          


Q ss_pred             ----cCccceeEEEEEeccCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCC
Q 035895          421 ----CSNEDFRALVLEYTTNGSLEKVLYSSN----------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHN  486 (527)
Q Consensus       421 ----~~~~~~~~lv~ey~~~g~L~~~l~~~~----------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~n  486 (527)
                          +..++..++||||+++++|.+++....          ..+++.....++.+++.|++|||   +.+|+||||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~N  160 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhc
Confidence                223356789999999999999987543          25788889999999999999999   9999999999999


Q ss_pred             eeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          487 KLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       487 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |++++++.++++|||+++...............++..||||
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAW  201 (296)
T ss_pred             eeecCCCceEEccccceeecccCcceeecCcCCCCceecCH
Confidence            99999999999999999875433221122223356789988

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.80  E-value=2.6e-19  Score=173.18  Aligned_cols=139  Identities=25%  Similarity=0.456  Sum_probs=111.2

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccCC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      ++|.+.+.||+|+||.||+|....+..||+|.+...                           +...+..++||||+++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~   85 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKG   85 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCC
Confidence            458888999999999999999877778999986421                           11234567999999999


Q ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          438 SLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       438 ~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      +|.+++.... ..+++..+..++.+++.|++|+|   +.+|+||||||+||++++++.++++|||+++....... ....
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~-~~~~  161 (260)
T cd05069          86 SLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY-TARQ  161 (260)
T ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcc-cccC
Confidence            9999997543 34788889999999999999999   99999999999999999999999999999987643221 1111


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       162 ~~~~~~~y~~P  172 (260)
T cd05069         162 GAKFPIKWTAP  172 (260)
T ss_pred             CCccchhhCCH
Confidence            22345678887

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.80  E-value=2.4e-19  Score=173.30  Aligned_cols=140  Identities=22%  Similarity=0.424  Sum_probs=113.1

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .++|++.++||+|+||.||+|..++++.||+|.+...                           ....+..++||||+++
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMEN   84 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCC
Confidence            3568899999999999999999988999999987431                           1123456899999999


Q ss_pred             CcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |+|.+++... +..+++.+...++.+++.|++|||   +.+++||||||+||++++++.++++|||+++....... ...
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~  160 (260)
T cd05067          85 GSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEY-TAR  160 (260)
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCc-ccc
Confidence            9999998653 345788889999999999999999   99999999999999999999999999999987652221 111


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       161 ~~~~~~~~y~~p  172 (260)
T cd05067         161 EGAKFPIKWTAP  172 (260)
T ss_pred             cCCcccccccCH
Confidence            223345678887

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.80  E-value=2.9e-19  Score=176.77  Aligned_cols=138  Identities=24%  Similarity=0.422  Sum_probs=112.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|+..+.||+|+||.||+|+.+ +++.||+|.+...                              +..++..++|||
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e   84 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   84 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEe
Confidence            467999999999999999999864 6789999987521                              123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++ ++|.+++...+..+++.....++.|++.||+|+|   +++|+||||||+||++++++.+|++|||+++....... 
T Consensus        85 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~-  159 (301)
T cd07873          85 YLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK-  159 (301)
T ss_pred             ccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC-
Confidence            997 5899888766666788888999999999999999   99999999999999999999999999999986532221 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......++..|+||
T Consensus       160 -~~~~~~~~~~y~~P  173 (301)
T cd07873         160 -TYSNEVVTLWYRPP  173 (301)
T ss_pred             -cccccceeecccCc
Confidence             11223457789988

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.80  E-value=2.5e-19  Score=175.77  Aligned_cols=148  Identities=26%  Similarity=0.370  Sum_probs=118.2

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------c---
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------C---  421 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~---  421 (527)
                      +.++.+....++|++.+.||+|+||.||+|.. .+++.+|+|++...                             +   
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            44556667788999999999999999999986 46789999986320                             1   


Q ss_pred             --CccceeEEEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          422 --SNEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       422 --~~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                        ...+..++||||+++|+|.+++..   .+..+++.....++.+++.|+.|+|   +++|+||||||+||++++++.+|
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~k  164 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGVK  164 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCEE
Confidence              122457899999999999998753   2345778888889999999999999   99999999999999999999999


Q ss_pred             EeecccccccCCCCCccceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++|||+++.......  ......++..|+||
T Consensus       165 l~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  193 (286)
T cd06638         165 LVDFGVSAQLTSTRL--RRNTSVGTPFWMAP  193 (286)
T ss_pred             EccCCceeecccCCC--ccccccCCCcccCh
Confidence            999999987643221  11223578889998

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.80  E-value=3.1e-19  Score=175.22  Aligned_cols=135  Identities=30%  Similarity=0.418  Sum_probs=108.7

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc----------------------C-----------------ccc
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC----------------------S-----------------NED  425 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~----------------------~-----------------~~~  425 (527)
                      .|++.+.||+|+||+||+|+.. +++.||+|.+....                      .                 ...
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4788899999999999999864 68999999864210                      0                 112


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ..++||||+++ +|.+++.... ..+++.....++.|++.||+|+|   +.+|+||||||+||+++.++.+|++|||+++
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~~  156 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLAR  156 (288)
T ss_pred             eEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccCccc
Confidence            35799999985 8988886543 34788889999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ..+...+|..|+||
T Consensus       157 ~~~~~~---~~~~~~~~~~y~aP  176 (288)
T cd07863         157 IYSCQM---ALTPVVVTLWYRAP  176 (288)
T ss_pred             cccCcc---cCCCccccccccCc
Confidence            764322   12234578889998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.80  E-value=2e-19  Score=174.96  Aligned_cols=141  Identities=29%  Similarity=0.421  Sum_probs=113.3

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cC------ccc
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CS------NED  425 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~------~~~  425 (527)
                      .+.+.|+..+.||+|+||.||+|+. .+++.||+|++...                             +.      .+.
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            3456788999999999999999986 46889999986421                             00      023


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ..++||||+++|+|.+++.... ..+++.....++.|++.|++|||   +++|+|||+||+||++++++.++++|||+++
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEccCCCce
Confidence            5689999999999999987643 45788888999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......  ......|+..|+||
T Consensus       160 ~~~~~~~--~~~~~~g~~~y~aP  180 (272)
T cd06637         160 QLDRTVG--RRNTFIGTPYWMAP  180 (272)
T ss_pred             ecccccc--cCCcccccccccCH
Confidence            6543211  12234577889987

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.80  E-value=2.9e-19  Score=173.65  Aligned_cols=134  Identities=22%  Similarity=0.366  Sum_probs=99.7

Q ss_pred             ceeccCCceEEEEEEccCC---cEEEEEEEee------------------------------ccCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQDG---MEFAIKVFHF------------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~---~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|+..++   ..+++|.+..                              .+......++||||+++|
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            3699999999999975443   3456665432                              122334568999999999


Q ss_pred             cHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          438 SLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       438 ~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|.+++....   ...+......++.||+.||+|+|   +.+|+||||||+||+++.++.+|++|||+++..........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  157 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIET  157 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccccCcchhhhc
Confidence            9999987542   23455666789999999999999   89999999999999999999999999999865322211111


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       158 ~~~~~~~~~y~aP  170 (268)
T cd05086         158 EDDKCVPLRWLAP  170 (268)
T ss_pred             ccCCcCcccccCc
Confidence            2234467778887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.80  E-value=4e-19  Score=171.40  Aligned_cols=134  Identities=34%  Similarity=0.565  Sum_probs=110.0

Q ss_pred             ceeccCCceEEEEEEccC----CcEEEEEEEeec------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQD----GMEFAIKVFHFS------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|....    +..||+|.+...                              +......++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            479999999999998753    788999987532                              2234566899999999


Q ss_pred             CcHHHHHHhc--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          437 GSLEKVLYSS--------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       437 g~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |+|.+++...        ...+++.+...++.+++.|++|+|   +++++||||||+||++++++.+|++|||.++....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999999875        366899999999999999999999   99999999999999999999999999999987754


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...........++..|+||
T Consensus       158 ~~~~~~~~~~~~~~~y~aP  176 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAP  176 (262)
T ss_pred             ccccccccCCCcCccccCH
Confidence            3221222334467789988

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.80  E-value=3.5e-19  Score=172.58  Aligned_cols=139  Identities=27%  Similarity=0.482  Sum_probs=111.4

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEEEEEecc
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .+|++.+.||+|+||.||+|... +++.||+|.+..                            .+..++..++||||++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT   85 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCC
Confidence            45788899999999999999864 588999998642                            1233456679999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|+|.+++.... ..+++..+..++.|+++|++|+|   +.+++||||||+||++++++.+|++|||+++........ .
T Consensus        86 ~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~-~  161 (263)
T cd05052          86 YGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-A  161 (263)
T ss_pred             CCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCccccccccceee-c
Confidence            999999987543 45788889999999999999999   999999999999999999999999999999876433211 1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       162 ~~~~~~~~~y~aP  174 (263)
T cd05052         162 HAGAKFPIKWTAP  174 (263)
T ss_pred             cCCCCCccccCCH
Confidence            1112235578887

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.80  E-value=3.6e-19  Score=173.17  Aligned_cols=138  Identities=25%  Similarity=0.464  Sum_probs=106.0

Q ss_pred             ccccceeccCCceEEEEEEcc----CCcEEEEEEEeec-------------------------------cCcc------c
Q 035895          387 FSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS-------------------------------CSNE------D  425 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~-------------------------------~~~~------~  425 (527)
                      |++.+.||+|+||.||+|...    .+..||+|.++..                               +...      .
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            567889999999999999864    2467999987521                               0011      1


Q ss_pred             eeEEEEEeccCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          426 FRALVLEYTTNGSLEKVLYSS-----NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      ..++||||+++|+|..++...     ...+++.....++.|++.||+|+|   +.+|+||||||+||++++++.+|++||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCc
Confidence            257999999999999988543     135788888999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++................+..|+||
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~p  184 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAI  184 (273)
T ss_pred             cceeeccccccccccccccCCccccCH
Confidence            999876433221111122235568776

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.80  E-value=3.5e-19  Score=171.77  Aligned_cols=135  Identities=29%  Similarity=0.425  Sum_probs=109.0

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|..+ |..||+|.+...                            ....+..++||||++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~   83 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA   83 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCC
Confidence            356889999999999999999765 678999986421                            122345789999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|+|.+++...+ ..+++.....++.+++.|++|+|   +++|+||||||+||++++++.+|++|||+++.......   
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~---  157 (256)
T cd05082          84 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---  157 (256)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceeccccCC---
Confidence            999999987643 34788888999999999999999   99999999999999999999999999999886532211   


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                        ....+..||||
T Consensus       158 --~~~~~~~y~aP  168 (256)
T cd05082         158 --TGKLPVKWTAP  168 (256)
T ss_pred             --CCccceeecCH
Confidence              12234568887

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.80  E-value=3.1e-19  Score=175.71  Aligned_cols=140  Identities=29%  Similarity=0.479  Sum_probs=110.7

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEee-----------------------------ccCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF-----------------------------SCSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~-----------------------------~~~~~~~~~l  429 (527)
                      ++|.+.+.||+|+||.||+|+.      .++..+|+|.+..                             .+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            4588889999999999999974      2456789998642                             1233456789


Q ss_pred             EEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc
Q 035895          430 VLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~  494 (527)
                      ||||+++|+|.+++...+               ..+++.++..++.+++.|++|+|   +++|+||||||+||++++++.
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~  161 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLL  161 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCc
Confidence            999999999999997532               23788899999999999999999   999999999999999999999


Q ss_pred             EEEeecccccccCCCCCccceeccccccccccC
Q 035895          495 AHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++++|||+++...............++..|+||
T Consensus       162 ~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  194 (291)
T cd05094         162 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  194 (291)
T ss_pred             EEECCCCcccccCCCceeecCCCCCcceeecCh
Confidence            999999999865432211112223456789988

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.80  E-value=2.8e-19  Score=174.46  Aligned_cols=141  Identities=22%  Similarity=0.384  Sum_probs=110.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|...      ++..||+|.+...                              +......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            356888999999999999999753      3468999986421                              1233567


Q ss_pred             EEEEEeccCCcHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          428 ALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                      ++||||+++|+|.+++....         ..+++.....++.|++.|++|+|   +.+|+||||||+||++++++.+|++
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEEC
Confidence            89999999999999986432         23577888999999999999999   9999999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.+.............++..|+||
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCH
Confidence            99999876433221112223456789988

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.80  E-value=1.9e-19  Score=174.05  Aligned_cols=136  Identities=38%  Similarity=0.583  Sum_probs=106.1

Q ss_pred             ccceeccCCceEEEEEEcc-----CCcEEEEEEEee------------------------------ccCccceeEEEEEe
Q 035895          389 ANNLIGRGSFGSVYKARLQ-----DGMEFAIKVFHF------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~~-----~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey  433 (527)
                      ..+.||+|+||.||+|.+.     .+..|+||++..                              .|...+..++||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4678999999999999876     357899999842                              12233456899999


Q ss_pred             ccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++... ...+++.++..|+.||+.||+|||   +.+++|++|+++||++++++.+||+|||+++........
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~  159 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKY  159 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999876 567899999999999999999999   899999999999999999999999999999876322221


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ...........|+||
T Consensus       160 ~~~~~~~~~~~~~aP  174 (259)
T PF07714_consen  160 KNDSSQQLPLRYLAP  174 (259)
T ss_dssp             EESTTSESGGGGS-H
T ss_pred             ccccccccccccccc
Confidence            111223356678887

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.80  E-value=1.5e-19  Score=177.04  Aligned_cols=140  Identities=24%  Similarity=0.390  Sum_probs=108.3

Q ss_pred             CCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~~  428 (527)
                      .+|++.+.||+|+||.||+|+..      +++.||||++...                              +...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            34778899999999999999853      3578999997521                              12234567


Q ss_pred             EEEEeccCCcHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC
Q 035895          429 LVLEYTTNGSLEKVLYSS---------------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI  493 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~  493 (527)
                      +++||+++++|.+++...               ...+++.....++.|++.||+|+|   +++|+||||||+||++++++
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~  161 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKL  161 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCC
Confidence            899999999999998532               123677788899999999999999   99999999999999999999


Q ss_pred             cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+|++|||+++...............+++.||||
T Consensus       162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05091         162 NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSP  195 (283)
T ss_pred             ceEecccccccccccchheeeccCccCCccccCH
Confidence            9999999999876433221111123346789998

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.80  E-value=2.8e-19  Score=177.99  Aligned_cols=140  Identities=26%  Similarity=0.439  Sum_probs=108.4

Q ss_pred             CCccccceeccCCceEEEEEEcc--------CCcEEEEEEEee-------------------------------ccCccc
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHF-------------------------------SCSNED  425 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~-------------------------------~~~~~~  425 (527)
                      ++|.+.+.||+|+||.||+|+..        ....||+|++..                               .+..++
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG   91 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence            56888999999999999999731        245789998642                               122344


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                      ..++||||+++|+|.+++....               ..+++.+...++.|++.|++|+|   +++|+||||||+||+++
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~  168 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVT  168 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEEc
Confidence            5789999999999999996532               34788888999999999999999   99999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+|++|||+++...............++..||||
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (314)
T cd05099         169 EDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAP  205 (314)
T ss_pred             CCCcEEEccccccccccccccccccccCCCCccccCH
Confidence            9999999999999876432211111112234568887

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.80  E-value=3.5e-19  Score=173.09  Aligned_cols=120  Identities=27%  Similarity=0.530  Sum_probs=102.8

Q ss_pred             CCccccceeccCCceEEEEEEccC-C---cEEEEEEEeec------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD-G---MEFAIKVFHFS------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~-~---~~vavK~~~~~------------------------------~~~~~~~~lv  430 (527)
                      .+|++.+.||+|+||.||+|.... +   ..||||++...                              +..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            457889999999999999998642 3   36999986421                              2234456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |||+++|+|.+++...+..+++.+...++.|++.|++|+|   +++++||||||+||+++.++.+|++|||+++...
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          84 TEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             EecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccc
Confidence            9999999999999766667889999999999999999999   9999999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.80  E-value=4.6e-19  Score=174.33  Aligned_cols=134  Identities=34%  Similarity=0.459  Sum_probs=112.0

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|... +++.||+|++...                                +...+..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            36889999999999999999864 6899999987421                                12334668999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++... ..++......++.|++.||+|+|   +.+|+||||+|+||++++++.+|++|||+++.....  
T Consensus        81 e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~--  154 (290)
T cd05580          81 EYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR--  154 (290)
T ss_pred             ecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC--
Confidence            999999999998765 45788888899999999999999   999999999999999999999999999999876433  


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....+++.|+||
T Consensus       155 ---~~~~~~~~~y~aP  167 (290)
T cd05580         155 ---TYTLCGTPEYLAP  167 (290)
T ss_pred             ---CCCCCCCccccCh
Confidence               1223567789988

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.80  E-value=4.8e-19  Score=173.17  Aligned_cols=128  Identities=29%  Similarity=0.462  Sum_probs=105.1

Q ss_pred             eeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeEEEEEecc
Q 035895          392 LIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~lv~ey~~  435 (527)
                      +||+|+||.||+|+. .+++.||+|.+...                                   +..++..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999986 46889999986421                                   112345679999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      ||+|.+++... ..+++.++..++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.+.....    
T Consensus        81 g~~L~~~l~~~-~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~----  152 (278)
T cd05606          81 GGDLHYHLSQH-GVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----  152 (278)
T ss_pred             CCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC----
Confidence            99999988654 45789999999999999999999   89999999999999999999999999999886543211    


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....|+..|+||
T Consensus       153 ~~~~~~~~y~aP  164 (278)
T cd05606         153 HASVGTHGYMAP  164 (278)
T ss_pred             cCcCCCcCCcCc
Confidence            123578889988

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.80  E-value=5.3e-19  Score=174.09  Aligned_cols=138  Identities=29%  Similarity=0.364  Sum_probs=112.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||.||+|+.. +++.||+|++...                             +..+...++||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            56889999999999999999874 5889999987421                             12345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++++|..++......+++..+..++.|++.|++|+|   +.+|+||||||+||+++.++.++|+|||+++.......  .
T Consensus        92 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~--~  166 (292)
T cd06644          92 PGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ--R  166 (292)
T ss_pred             CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceecccccc--c
Confidence            999999888765566889999999999999999999   99999999999999999999999999999876432211  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       167 ~~~~~~~~~y~aP  179 (292)
T cd06644         167 RDSFIGTPYWMAP  179 (292)
T ss_pred             cceecCCccccCc
Confidence            1223467778887

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.80  E-value=2.8e-19  Score=176.93  Aligned_cols=140  Identities=25%  Similarity=0.426  Sum_probs=110.3

Q ss_pred             CCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------cCcccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------CSNEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~~~~~~~  427 (527)
                      ++|.+.+.||+|+||.||+|..      .++..||+|++...                               +...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            4688899999999999999963      23567999976421                               1233456


Q ss_pred             EEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ++||||+++|+|.+++.... ..+++.+...++.+++.|++|+|   +++|+||||||+||+++.++.++++|||+++..
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~  191 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGLARDI  191 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcccccc
Confidence            89999999999999997543 34789999999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .............++..|+||
T Consensus       192 ~~~~~~~~~~~~~~~~~y~aP  212 (302)
T cd05055         192 MNDSNYVVKGNARLPVKWMAP  212 (302)
T ss_pred             cCCCceeecCCCCcccccCCH
Confidence            433221111122346679988

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.80  E-value=2.5e-19  Score=173.88  Aligned_cols=137  Identities=31%  Similarity=0.430  Sum_probs=112.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||+|+++..                             +...+..++||||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            4688889999999999999986 46889999987531                             12245678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++...+ .++..+...++.+++.|++|+|   +.+|+||||||+||+++.++.++++|||+++......  ..
T Consensus        89 ~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~--~~  162 (267)
T cd06645          89 GGGSLQDIYHVTG-PLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATI--AK  162 (267)
T ss_pred             CCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcc--cc
Confidence            9999999886543 5788889999999999999999   8999999999999999999999999999987654221  11


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       163 ~~~~~~~~~y~aP  175 (267)
T cd06645         163 RKSFIGTPYWMAP  175 (267)
T ss_pred             cccccCcccccCh
Confidence            2234578889998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.79  E-value=2.5e-19  Score=177.48  Aligned_cols=141  Identities=24%  Similarity=0.396  Sum_probs=109.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCc----EEEEEEEeecc-----------------------------CccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGM----EFAIKVFHFSC-----------------------------SNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~----~vavK~~~~~~-----------------------------~~~~~~~l  429 (527)
                      .++|+..+.||+|+||.||+|.. .++.    .||+|.+....                             ......++
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~   85 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQL   85 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCcee
Confidence            35688889999999999999985 3444    47888764211                             01123458


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ++||+++|+|.+++......+++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.....
T Consensus        86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~  162 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD  162 (303)
T ss_pred             eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccccccCc
Confidence            99999999999998766556788888999999999999999   999999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..........++..||||
T Consensus       163 ~~~~~~~~~~~~~~y~~P  180 (303)
T cd05110         163 EKEYNADGGKMPIKWMAL  180 (303)
T ss_pred             ccccccCCCccccccCCH
Confidence            222122223346678887

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.79  E-value=5.8e-19  Score=178.01  Aligned_cols=136  Identities=26%  Similarity=0.348  Sum_probs=110.3

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cC------
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CS------  422 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~------  422 (527)
                      .+..+.|+..+.||+|+||.||+|.. .+++.||||++...                               +.      
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            34467899999999999999999985 56889999987421                               00      


Q ss_pred             ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      .....+++||++ +++|.+++..  ..++......++.|++.||+|||   +++|+||||||+||++++++.+|++|||+
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~  164 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKC--QKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGL  164 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCCcc
Confidence            012357899988 7799888753  35788889999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.....     .+...+|..|+||
T Consensus       165 ~~~~~~~-----~~~~~~t~~y~aP  184 (343)
T cd07878         165 ARQADDE-----MTGYVATRWYRAP  184 (343)
T ss_pred             ceecCCC-----cCCccccccccCc
Confidence            9876432     1234578889998

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.79  E-value=5.3e-19  Score=176.21  Aligned_cols=134  Identities=24%  Similarity=0.411  Sum_probs=102.8

Q ss_pred             cceeccCCceEEEEEEcc---CCcEEEEEEEeec---------------------------c--CccceeEEEEEeccCC
Q 035895          390 NNLIGRGSFGSVYKARLQ---DGMEFAIKVFHFS---------------------------C--SNEDFRALVLEYTTNG  437 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~---~~~~vavK~~~~~---------------------------~--~~~~~~~lv~ey~~~g  437 (527)
                      .++||+|+||+||+|+..   +++.||+|.+...                           +  ......++||||+.+ 
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC-
Confidence            368999999999999864   4678999987421                           0  123356799999864 


Q ss_pred             cHHHHHHhc--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee----CCCCcEEEeecccccc
Q 035895          438 SLEKVLYSS--------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKL  505 (527)
Q Consensus       438 ~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~Dfg~a~~  505 (527)
                      +|.+++...        ...++......++.|++.||+|||   +++|+||||||+|||+    +.++.+||+|||+|+.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence            888877532        124677788899999999999999   9999999999999999    4568999999999987


Q ss_pred             cCCCCCc-cceeccccccccccC
Q 035895          506 LTGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      +...... .......+|++||||
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07868         162 FNSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             cCCCCccccccCCccccccccCC
Confidence            6533211 112235678999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.79  E-value=4e-19  Score=171.77  Aligned_cols=140  Identities=28%  Similarity=0.497  Sum_probs=112.9

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|..++++.||||.+...                            +..+...++||||++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence            4678999999999999999999888889999987531                            123356789999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +++|.+++.... ..+++.+...++.+++.|++|+|   +.+++||||||+||++++++.+|++|||+++....... ..
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~  160 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEY-TA  160 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccchhh-hh
Confidence            999999997643 46788899999999999999999   99999999999999999999999999999987643211 11


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      ......+..|+||
T Consensus       161 ~~~~~~~~~y~~P  173 (261)
T cd05034         161 REGAKFPIKWTAP  173 (261)
T ss_pred             hhccCCCccccCH
Confidence            1122234568776

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.79  E-value=4.9e-19  Score=171.77  Aligned_cols=138  Identities=25%  Similarity=0.439  Sum_probs=111.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||||.+...                                +...+..++||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            5799999999999999999986 47899999976320                                11234567999


Q ss_pred             EeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|.+++..   ....++......++.+++.|++|+|   +++++||||||+||+++.++.++++|||+++.+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            99999999988753   2334677888899999999999999   99999999999999999999999999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  ......+++.|+||
T Consensus       159 ~~~--~~~~~~~~~~~~aP  175 (267)
T cd08228         159 KTT--AAHSLVGTPYYMSP  175 (267)
T ss_pred             hhH--HHhcCCCCccccCh
Confidence            221  11223567789988

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.79  E-value=5.2e-19  Score=170.78  Aligned_cols=133  Identities=28%  Similarity=0.456  Sum_probs=104.1

Q ss_pred             eeccCCceEEEEEEcc---CCcEEEEEEEeec-----------------------------cCccceeEEEEEeccCCcH
Q 035895          392 LIGRGSFGSVYKARLQ---DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~~---~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      .||+|+||.||+|.++   ++..||+|++...                             +...+..++||||+++|+|
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L   81 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPL   81 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCH
Confidence            3899999999999753   4567999986421                             1123456799999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc-cceecc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS-MTQTQT  518 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~  518 (527)
                      .+++......+++.++..++.+++.|++|+|   +++++||||||+||+++.++.+|++|||+++........ ...+..
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  158 (257)
T cd05115          82 NKFLSGKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAG  158 (257)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCC
Confidence            9999765567889999999999999999999   899999999999999999999999999999865432211 111112


Q ss_pred             ccccccccC
Q 035895          519 LAIIGYMAP  527 (527)
Q Consensus       519 ~~t~~y~aP  527 (527)
                      .++..|+||
T Consensus       159 ~~~~~y~aP  167 (257)
T cd05115         159 KWPLKWYAP  167 (257)
T ss_pred             CCCcccCCH
Confidence            235678887

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.79  E-value=7.8e-19  Score=169.13  Aligned_cols=137  Identities=32%  Similarity=0.463  Sum_probs=112.9

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEee-------------------------------ccCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-------------------------------~~~~~~~~~lv~ey  433 (527)
                      +|+..+.||+|+||.||+|... +++.||+|.+..                               .+...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4788899999999999999864 689999998642                               12234567899999


Q ss_pred             ccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++++|.+++... +..+++.+...++.+++.|++|+|   +.+++||||||+||++++++.++++|||+++.+......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~  157 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF  157 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccch
Confidence            9999999999764 456788888999999999999999   999999999999999999999999999999876533211


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++.+|+||
T Consensus       158 --~~~~~~~~~y~aP  170 (256)
T cd08529         158 --ANTIVGTPYYLSP  170 (256)
T ss_pred             --hhccccCccccCH
Confidence              1223467789887

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.79  E-value=7.3e-19  Score=170.44  Aligned_cols=138  Identities=27%  Similarity=0.446  Sum_probs=112.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|... +|+.||+|.++..                                +...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57999999999999999999876 7899999977421                                11234567999


Q ss_pred             EeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|..++...   +..+++.+...++.+++.|++|+|   +.+|+||||||+||+++.++.++++|||+++.+..
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            999999999988642   344788889999999999999999   99999999999999999999999999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  .....++..|+||
T Consensus       159 ~~~~--~~~~~~~~~y~ap  175 (267)
T cd08224         159 KTTA--AHSLVGTPYYMSP  175 (267)
T ss_pred             CCcc--cceecCCccccCH
Confidence            2211  1223467778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.79  E-value=3e-19  Score=180.95  Aligned_cols=135  Identities=26%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------------Ccc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------------SNE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------------~~~  424 (527)
                      ..+.|+..+.||+|+||.||+|.. .+++.||||++....                                     ...
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            457899999999999999999986 468899999874210                                     011


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+++ ++.+.+..   .+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~---~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~~  167 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  167 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCcccc
Confidence            245899999976 66666643   4678888889999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ......+|..|+||
T Consensus       168 ~~~~~~---~~~~~~~t~~y~aP  187 (355)
T cd07874         168 TAGTSF---MMTPYVVTRYYRAP  187 (355)
T ss_pred             cCCCcc---ccCCccccCCccCH
Confidence            754321   12234578899998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.79  E-value=4e-19  Score=180.69  Aligned_cols=135  Identities=25%  Similarity=0.269  Sum_probs=108.2

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------C------cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------S------NE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~------~~  424 (527)
                      ..+.|+..+.||+|+||.||+|.. .+++.||||++....                               .      ..
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            457899999999999999999986 468899999874210                               0      11


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+++ +|.+.+..   .+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  174 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  174 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHh---cCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCCCcc
Confidence            245899999975 67776643   3677888899999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ..+...+|..|+||
T Consensus       175 ~~~~~~---~~~~~~~t~~y~aP  194 (364)
T cd07875         175 TAGTSF---MMTPYVVTRYYRAP  194 (364)
T ss_pred             ccCCCC---cccCCcccCCcCCH
Confidence            754321   12234578899998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.79  E-value=6.6e-19  Score=172.80  Aligned_cols=137  Identities=29%  Similarity=0.430  Sum_probs=110.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||+|.+...                              +..++..++||||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            36888999999999999999875 7899999987531                              1234567899999


Q ss_pred             ccCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      +++++|..++...  ...+++.....++.+++.|++|||.  +.+|+||||||+||+++.++.++++|||+++.+.....
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  158 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA  158 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcc
Confidence            9999999988653  2357888999999999999999992  35899999999999999999999999999986532211


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                          ....++.+|+||
T Consensus       159 ----~~~~~~~~y~aP  170 (286)
T cd06622         159 ----KTNIGCQSYMAP  170 (286)
T ss_pred             ----ccCCCccCccCc
Confidence                123466778887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.79  E-value=4.3e-19  Score=174.55  Aligned_cols=139  Identities=25%  Similarity=0.421  Sum_probs=107.5

Q ss_pred             CccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccceeEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNEDFRAL  429 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~~~~l  429 (527)
                      +|++.+.||+|+||.||+|+..      ....+|+|.+..                              .+..++..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            4778899999999999999742      235788987642                              1233455679


Q ss_pred             EEEeccCCcHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCC
Q 035895          430 VLEYTTNGSLEKVLYSSN-----------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHN  486 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~n  486 (527)
                      ||||+++|+|.+++....                       ..+++.....++.+++.|++|||   +++|+||||||+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~n  157 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARN  157 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhhe
Confidence            999999999999986421                       23678888999999999999999   9999999999999


Q ss_pred             eeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          487 KLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       487 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |++++++.+|++|||+++...............++..|+||
T Consensus       158 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~ap  198 (290)
T cd05045         158 VLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAI  198 (290)
T ss_pred             EEEcCCCcEEeccccccccccCccchhcccCCCCCccccCH
Confidence            99999999999999999865433222122223345678887

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.79  E-value=4.4e-19  Score=175.01  Aligned_cols=140  Identities=24%  Similarity=0.398  Sum_probs=106.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-----------------CCcEEEEEEEeec---------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-----------------DGMEFAIKVFHFS---------------------------  420 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-----------------~~~~vavK~~~~~---------------------------  420 (527)
                      ++|++.+.||+|+||.||+|+..                 ++..||+|++...                           
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            46889999999999999998532                 2346899987531                           


Q ss_pred             ---cCccceeEEEEEeccCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCe
Q 035895          421 ---CSNEDFRALVLEYTTNGSLEKVLYSSN----------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK  487 (527)
Q Consensus       421 ---~~~~~~~~lv~ey~~~g~L~~~l~~~~----------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~ni  487 (527)
                         +...+..++||||+++|+|.+++....          ..+++.+...++.+++.|++|+|   +.+++||||||+||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Ni  161 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNC  161 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCChheE
Confidence               122345679999999999999987532          13567788999999999999999   99999999999999


Q ss_pred             eeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       488 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++++++.++++|||+++.+.............++..|+||
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (296)
T cd05095         162 LVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSW  201 (296)
T ss_pred             EEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCH
Confidence            9999999999999999866432211111112234567776

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.79  E-value=4.5e-19  Score=162.21  Aligned_cols=113  Identities=22%  Similarity=0.264  Sum_probs=92.0

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeeccCc---------------------------------c------------
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSN---------------------------------E------------  424 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~~~---------------------------------~------------  424 (527)
                      ...||+|+||.||+|..++|+.||||+++.....                                 |            
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4689999999999999889999999998643110                                 0            


Q ss_pred             --------ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          425 --------DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       425 --------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                              ...++||||++|+++...... ...++..+...++.|++.+++|+ |   +.+|+||||||+||+++ ++.+
T Consensus        82 ~~p~~~~~~~~~iVmE~i~g~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~l~H---~~giiHrDlkP~NIli~-~~~v  156 (190)
T cd05147          82 PCPEPILLKSHVLVMEFIGDDGWAAPRLK-DAPLSESKARELYLQVIQIMRILYQ---DCRLVHADLSEYNLLYH-DGKL  156 (190)
T ss_pred             CCCcEEEecCCEEEEEEeCCCCCcchhhh-cCCCCHHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEE-CCcE
Confidence                    112699999999877654332 24578888899999999999999 6   88999999999999998 4789


Q ss_pred             EEeecccccccC
Q 035895          496 HLSDFGIAKLLT  507 (527)
Q Consensus       496 kl~Dfg~a~~~~  507 (527)
                      +++|||+|....
T Consensus       157 ~LiDFG~a~~~~  168 (190)
T cd05147         157 YIIDVSQSVEHD  168 (190)
T ss_pred             EEEEccccccCC
Confidence            999999998653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.79  E-value=3.9e-19  Score=180.41  Aligned_cols=135  Identities=26%  Similarity=0.298  Sum_probs=107.3

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------C------cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------S------NE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~------~~  424 (527)
                      ..+.|++.+.||+|+||.||+|+. .+|+.||+|++....                               .      ..
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            357899999999999999999986 468999999874210                               0      01


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+++ ++.+.+..   .++..+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~  171 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  171 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc---cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecCCCcc
Confidence            235899999976 56665532   3677778889999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ..+...+|..|+||
T Consensus       172 ~~~~~~---~~~~~~~t~~y~aP  191 (359)
T cd07876         172 TACTNF---MMTPYVVTRYYRAP  191 (359)
T ss_pred             ccccCc---cCCCCcccCCCCCc
Confidence            653221   12234678899998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.79  E-value=3.9e-19  Score=173.87  Aligned_cols=139  Identities=28%  Similarity=0.388  Sum_probs=114.6

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey  433 (527)
                      .++|++.+.||+|+||.||+|... ++..||+|++...                             +..++..++||||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            356899999999999999999864 6889999987421                             2234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++...+..+++.....++.|++.|++|+|   +.+|+||||||+||+++.++.++++|||++........  
T Consensus        84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--  158 (280)
T cd06611          84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ--  158 (280)
T ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhccccc--
Confidence            9999999999876667888899999999999999999   99999999999999999999999999999876533221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       159 ~~~~~~~~~~y~~P  172 (280)
T cd06611         159 KRDTFIGTPYWMAP  172 (280)
T ss_pred             ccceeecchhhcCH
Confidence            11223467778887

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.79  E-value=4.8e-19  Score=177.90  Aligned_cols=140  Identities=26%  Similarity=0.422  Sum_probs=108.3

Q ss_pred             CCccccceeccCCceEEEEEEcc--------CCcEEEEEEEee-------------------------------ccCccc
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHF-------------------------------SCSNED  425 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~-------------------------------~~~~~~  425 (527)
                      ..|++.+.||+|+||.||+|+..        .+..||+|++..                               .+..++
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            45888999999999999999742        124689997642                               122344


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                      ..++||||+++|+|.+++....               ..+++.+...++.|++.|++|||   +++|+||||||+||+++
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~  168 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVT  168 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEc
Confidence            5689999999999999987532               23678888999999999999999   99999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+|++|||+++...............++..||||
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (334)
T cd05100         169 EDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAP  205 (334)
T ss_pred             CCCcEEECCcccceecccccccccccCCCcCceEcCH
Confidence            9999999999999876432211111222335679988

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.79  E-value=5.8e-19  Score=170.97  Aligned_cols=128  Identities=23%  Similarity=0.390  Sum_probs=102.0

Q ss_pred             ceeccCCceEEEEEEccC-------------CcEEEEEEEee-----------------------------ccCccceeE
Q 035895          391 NLIGRGSFGSVYKARLQD-------------GMEFAIKVFHF-----------------------------SCSNEDFRA  428 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~-------------~~~vavK~~~~-----------------------------~~~~~~~~~  428 (527)
                      +.||+|+||.||+|...+             ...||+|++..                             .+..+...+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            468999999999997532             23588887532                             223445678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc-------EEEeecc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV-------AHLSDFG  501 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-------~kl~Dfg  501 (527)
                      +||||+++|+|..++......+++.....++.|++.|++|+|   +++|+||||||+||+++.++.       ++++|||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence            999999999999998766666888899999999999999999   999999999999999986654       8999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++......      ....++..||||
T Consensus       158 ~~~~~~~~------~~~~~~~~y~aP  177 (262)
T cd05077         158 IPITVLSR------QECVERIPWIAP  177 (262)
T ss_pred             CCccccCc------ccccccccccCh
Confidence            98765321      123466779988

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.79  E-value=4.2e-19  Score=173.41  Aligned_cols=141  Identities=26%  Similarity=0.375  Sum_probs=108.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|...      .+..||+|.+...                              +...+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            466899999999999999999864      3578999976421                              2233456


Q ss_pred             EEEEEeccCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEEe
Q 035895          428 ALVLEYTTNGSLEKVLYSSN------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHLS  498 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~  498 (527)
                      ++||||+++|+|.+++...+      ..+++.+...++.+|+.|++|||   +++++||||||+||+++.++   .+|++
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEec
Confidence            79999999999999987543      24788899999999999999999   89999999999999998654   69999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++................+..||||
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05036         162 DFGMARDIYRASYYRKGGRAMLPIKWMPP  190 (277)
T ss_pred             cCccccccCCccceecCCCCCccHhhCCH
Confidence            99999876322211111112234568887

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.79  E-value=7.3e-19  Score=172.92  Aligned_cols=138  Identities=25%  Similarity=0.427  Sum_probs=111.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|+..+.||+|+||.||+|..+ +++.||||.+...                              +..++..++|||
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEe
Confidence            467999999999999999999865 6889999987421                              223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ +|.+++......+++.....++.|++.||+|+|   +.+|+||||||+||++++++.+|++|||+++....... 
T Consensus        84 ~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~-  158 (291)
T cd07844          84 YLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK-  158 (291)
T ss_pred             cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccccCCCCc-
Confidence            9985 999988766557788889999999999999999   99999999999999999999999999999876432211 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......++..|+||
T Consensus       159 -~~~~~~~~~~~~aP  172 (291)
T cd07844         159 -TYSNEVVTLWYRPP  172 (291)
T ss_pred             -cccccccccccCCc
Confidence             11122346678887

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-20  Score=185.32  Aligned_cols=136  Identities=29%  Similarity=0.403  Sum_probs=110.1

Q ss_pred             ccccceeccCCceEEEEEEccC-CcEEEEEEEee-----------------cc------------CccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHF-----------------SC------------SNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~-----------------~~------------~~~~~~~lv~ey~~~  436 (527)
                      ++++..||.|+||.||+|.-++ +...|-|++..                 .|            ..++..++..|||+|
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~G  113 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGG  113 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCC
Confidence            4566789999999999998653 44455666531                 12            234566789999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |....++-.-+..+...+...++.+++.||.|||   +..|||||||+.|||++-+|.++++|||++.......  ....
T Consensus       114 GAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~--qkRD  188 (1187)
T KOG0579|consen  114 GAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTR--QKRD  188 (1187)
T ss_pred             chHhHHHHHhccccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchhHH--hhhc
Confidence            9999998887888999999999999999999999   9999999999999999999999999999976543221  2233


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      .+.||++||||
T Consensus       189 sFIGTPYWMAP  199 (1187)
T KOG0579|consen  189 SFIGTPYWMAP  199 (1187)
T ss_pred             cccCCcccccc
Confidence            57899999999

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.79  E-value=6e-19  Score=171.33  Aligned_cols=141  Identities=26%  Similarity=0.481  Sum_probs=110.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CC---cEEEEEEEeec------------------------------cCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DG---MEFAIKVFHFS------------------------------CSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~---~~vavK~~~~~------------------------------~~~~~~~~l  429 (527)
                      ...|+..+.||+|+||.||+|+.. ++   ..+|+|.+...                              +...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            346788899999999999999864 23   37999986421                              123345689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++.+...++.+++.|++|+|   +.+++||||||+||++++++.+|++|||+++.....
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  160 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDD  160 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCccceecccc
Confidence            99999999999999766567889999999999999999999   999999999999999999999999999999876432


Q ss_pred             CCc-cceeccccccccccC
Q 035895          510 DQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-~~~~~~~~t~~y~aP  527 (527)
                      ... ........+..|+||
T Consensus       161 ~~~~~~~~~~~~~~~y~~P  179 (268)
T cd05063         161 PEGTYTTSGGKIPIRWTAP  179 (268)
T ss_pred             cccceeccCCCcCceecCH
Confidence            211 111112234568887

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.79  E-value=1.2e-18  Score=168.66  Aligned_cols=139  Identities=29%  Similarity=0.416  Sum_probs=111.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~~~~~~l  429 (527)
                      ++|+..+.||+|+||.||+|.. .+++.||+|.++..                                  +..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            5789999999999999999985 56899999986421                                  123456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++++|.+.+...+ .++......++.+++.|++|||   +.+|+||||||+||++++++.++++|||+++.....
T Consensus        82 v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~  157 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTI  157 (263)
T ss_pred             EEEECCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecccc
Confidence            999999999999987543 4677788899999999999999   999999999999999999999999999999865422


Q ss_pred             CCccc-eeccccccccccC
Q 035895          510 DQSMT-QTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~-~~~~~~t~~y~aP  527 (527)
                      ..... .....++..|+||
T Consensus       158 ~~~~~~~~~~~~~~~y~aP  176 (263)
T cd06625         158 CSSGTGMKSVTGTPYWMSP  176 (263)
T ss_pred             ccccccccCCCcCccccCc
Confidence            11111 1223467789988

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.79  E-value=8.2e-19  Score=171.78  Aligned_cols=136  Identities=29%  Similarity=0.383  Sum_probs=111.2

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEee-----------------------------ccCccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      |++.+.||+|+||.||+|+.. ++..+|+|.+..                             .+..++..++||||+++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            677889999999999999865 578889998642                             12234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++.......  ...
T Consensus        87 ~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~  161 (282)
T cd06643          87 GAVDAVMLELERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ--RRD  161 (282)
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEcccccccccccccc--ccc
Confidence            9999988765566888899999999999999999   99999999999999999999999999999876532211  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       162 ~~~~~~~y~aP  172 (282)
T cd06643         162 SFIGTPYWMAP  172 (282)
T ss_pred             cccccccccCH
Confidence            34577889988

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.79  E-value=1.2e-18  Score=168.01  Aligned_cols=137  Identities=26%  Similarity=0.494  Sum_probs=111.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------c-CccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------C-SNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~-~~~~~~~lv~e  432 (527)
                      +|++.+.||+|++|.||+|... +++.||+|.+...                               + ..+...++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            5889999999999999999864 5789999987421                               1 12235679999


Q ss_pred             eccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++++|.+++... ...+++.+...++.+++.|++|+|   +.+|+||||||+||+++.++.++++|||+++.......
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~  157 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD  157 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecccCC
Confidence            99999999998753 345788899999999999999999   99999999999999999999999999999987643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......+++.|+||
T Consensus       158 --~~~~~~~~~~y~aP  171 (257)
T cd08223         158 --MASTLIGTPYYMSP  171 (257)
T ss_pred             --ccccccCCcCccCh
Confidence              11234467789998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.79  E-value=5.9e-19  Score=172.74  Aligned_cols=136  Identities=32%  Similarity=0.419  Sum_probs=108.8

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|++...                               +..++..++|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            46889999999999999999864 6899999987431                               122345689999


Q ss_pred             eccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |++ |+|.+++..   .+..+++.....++.|++.|++|+|   ++ +++||||||+||++++++.+||+|||+++....
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~  156 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD  156 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence            997 688887754   2345788889999999999999999   76 999999999999999999999999999987642


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   ..+...++..|+||
T Consensus       157 ~~---~~~~~~~~~~y~aP  172 (283)
T cd06617         157 SV---AKTIDAGCKPYMAP  172 (283)
T ss_pred             cc---ccccccCCccccCh
Confidence            21   11223467778887

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.79  E-value=8.7e-19  Score=172.41  Aligned_cols=149  Identities=29%  Similarity=0.365  Sum_probs=118.7

Q ss_pred             cccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cC-
Q 035895          374 RFSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CS-  422 (527)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~-  422 (527)
                      .++.+++..++++|++.+.||+|+||.||+|.. .+++.+|+|++...                             +. 
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            345566677789999999999999999999986 56889999987421                             00 


Q ss_pred             ----ccceeEEEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          423 ----NEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       423 ----~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                          ..+..++||||+++|+|.+++..   .+..+++.....++.+++.|++|+|   +++|+||||||+||++++++.+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~  167 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGV  167 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCE
Confidence                01346899999999999998863   2345788888999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |++|||+++........  .....++..|+||
T Consensus       168 kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aP  197 (291)
T cd06639         168 KLVDFGVSAQLTSTRLR--RNTSVGTPFWMAP  197 (291)
T ss_pred             EEeecccchhccccccc--ccCccCCccccCh
Confidence            99999999876432211  1123467778887

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.79  E-value=8.7e-19  Score=173.98  Aligned_cols=135  Identities=28%  Similarity=0.387  Sum_probs=110.6

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||+|+||.||+|+.. ++..+|+|.++.                              .+..++..++||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            46899999999999999999864 688899998642                              12345677899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++... ..+++.....++.+++.|++|+|   + .+++||||||+||++++++.+|++|||+++......  
T Consensus        81 ~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--  154 (308)
T cd06615          81 MDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--  154 (308)
T ss_pred             cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hhCCEEECCCChHHEEEecCCcEEEccCCCcccccccc--
Confidence            9999999999765 35678788899999999999999   6 589999999999999999999999999987653221  


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++..|+||
T Consensus       155 --~~~~~~~~~~~aP  167 (308)
T cd06615         155 --ANSFVGTRSYMSP  167 (308)
T ss_pred             --cccCCCCcCccCh
Confidence              1224567788887

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.79  E-value=7.1e-19  Score=171.15  Aligned_cols=137  Identities=26%  Similarity=0.459  Sum_probs=102.8

Q ss_pred             cccceeccCCceEEEEEEccC-C--cEEEEEEEeec-------------------------------cC------cccee
Q 035895          388 SANNLIGRGSFGSVYKARLQD-G--MEFAIKVFHFS-------------------------------CS------NEDFR  427 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~-~--~~vavK~~~~~-------------------------------~~------~~~~~  427 (527)
                      .+.+.||+|+||.||+|+..+ +  ..||+|.+...                               |.      .....
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            456899999999999998754 3  26899975321                               10      01134


Q ss_pred             EEEEEeccCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          428 ALVLEYTTNGSLEKVLYSS-----NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      ++||||+++|+|.+++...     ...+++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  158 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGL  158 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCCc
Confidence            7899999999999887432     234788888999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+.............++..|+||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~p  183 (272)
T cd05075         159 SKKIYNGDYYRQGRIAKMPVKWIAI  183 (272)
T ss_pred             ccccCcccceecCCcccCCcccCCH
Confidence            9876433211111112245567776

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.79  E-value=8.9e-19  Score=172.27  Aligned_cols=137  Identities=29%  Similarity=0.404  Sum_probs=109.8

Q ss_pred             CccccceeccCCceEEEEEEc----cCCcEEEEEEEeec----------------------------------cCcccee
Q 035895          386 GFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      +|++.+.||+|+||.||+|+.    .+|+.||+|++...                                  +..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            478889999999999999985    46889999987421                                  1123356


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++... ..+++.....++.+++.|++|+|   +.+++||||||+||++++++.+|++|||+++...
T Consensus        81 ~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          81 HLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            7999999999999998754 34677778888889999999999   9999999999999999999999999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..... ......++..|+||
T Consensus       157 ~~~~~-~~~~~~~~~~y~aP  175 (290)
T cd05613         157 EDEVE-RAYSFCGTIEYMAP  175 (290)
T ss_pred             ccccc-ccccccCCcccCCh
Confidence            32211 11234467789988

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.79  E-value=5.7e-19  Score=172.21  Aligned_cols=127  Identities=23%  Similarity=0.385  Sum_probs=99.3

Q ss_pred             eeccCCceEEEEEEccC-------------------------CcEEEEEEEee---------------------------
Q 035895          392 LIGRGSFGSVYKARLQD-------------------------GMEFAIKVFHF---------------------------  419 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~~~-------------------------~~~vavK~~~~---------------------------  419 (527)
                      .||+|+||.||+|....                         ...||+|++..                           
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            68999999999997421                         13588887632                           


Q ss_pred             --ccCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----
Q 035895          420 --SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----  493 (527)
Q Consensus       420 --~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----  493 (527)
                        .|..+...++||||+++|+|..++......+++..+..++.|+++||+|+|   +++|+||||||+||++++.+    
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~~~~  158 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLGLAEG  158 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccCcccC
Confidence              123345678999999999999998765667888889999999999999999   99999999999999997543    


Q ss_pred             ---cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 ---VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ---~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                         .+|++|||+++.....      ....++..|+||
T Consensus       159 ~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aP  189 (274)
T cd05076         159 TSPFIKLSDPGVSFTALSR------EERVERIPWIAP  189 (274)
T ss_pred             ccceeeecCCccccccccc------cccccCCcccCc
Confidence               4899999998654221      112356678887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.79  E-value=1.1e-18  Score=168.24  Aligned_cols=137  Identities=22%  Similarity=0.384  Sum_probs=111.3

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~  434 (527)
                      +|++.+.||+|+||.||+++.. +++.||+|.++..                              +..++..++||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4788899999999999999864 6889999987421                              12345678999999


Q ss_pred             cCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++... +..++......++.+++.|++|+|   +++|+|+||||+||++++++.++++|||.++........ 
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-  156 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY-  156 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccc-
Confidence            999999988653 345678888899999999999999   999999999999999999999999999999876433221 


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       157 -~~~~~~~~~~~aP  169 (255)
T cd08219         157 -ACTYVGTPYYVPP  169 (255)
T ss_pred             -cccccCCccccCH
Confidence             1224467778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.79  E-value=8.7e-19  Score=171.79  Aligned_cols=137  Identities=30%  Similarity=0.437  Sum_probs=113.1

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|++.+.||+|+||.||+|+. .+|+.||+|++...                               +......++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            478889999999999999986 46899999987531                               1223466899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      + +++|.+++......+++.++..++.+++.|++|+|   +.+++|+||||+||++++++.++++|||+++....... .
T Consensus        81 ~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~  155 (286)
T cd07832          81 M-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP-R  155 (286)
T ss_pred             c-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-C
Confidence            9 99999998766666889999999999999999999   99999999999999999999999999999987653321 1


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++.+|+||
T Consensus       156 ~~~~~~~~~~y~aP  169 (286)
T cd07832         156 LYSHQVATRWYRAP  169 (286)
T ss_pred             ccccccCcccccCc
Confidence            11234577889988

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.79  E-value=4.7e-19  Score=174.08  Aligned_cols=141  Identities=26%  Similarity=0.451  Sum_probs=109.6

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|+..+.||+|+||.||+|+..      ++..||+|++...                              +...+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            467899999999999999999853      4678999986421                              2233456


Q ss_pred             EEEEEeccCCcHHHHHHhcC---------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCC
Q 035895          428 ALVLEYTTNGSLEKVLYSSN---------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHN  486 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~---------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~n  486 (527)
                      ++||||+++|+|.+++....                     ..+++.+...++.+++.||+|+|   +++++||||||+|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhh
Confidence            89999999999999987421                     13567788899999999999999   9999999999999


Q ss_pred             eeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          487 KLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       487 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |++++++.++++|||+++................+..|+||
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPP  201 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCH
Confidence            99999999999999999865432211111112235568887

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.79  E-value=5.8e-19  Score=172.63  Aligned_cols=142  Identities=21%  Similarity=0.369  Sum_probs=112.3

Q ss_pred             hcCCccccceeccCCceEEEEEEccC-----CcEEEEEEEeec------------------------------c-Cccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQD-----GMEFAIKVFHFS------------------------------C-SNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~-----~~~vavK~~~~~------------------------------~-~~~~~  426 (527)
                      ..++|++.+.||+|+||.||+|....     +..||+|++...                              + .....
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            34678899999999999999998754     688999986421                              1 11345


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                      .++++||+++|+|.+++....       ..+++.+...++.+++.|++|||   +++++||||||+||++++++.+|++|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECC
Confidence            679999999999999986532       34788889999999999999999   99999999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+++.+.............++..|+||
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~y~ap  188 (280)
T cd05043         161 NALSRDLFPMDYHCLGDNENRPVKWMAL  188 (280)
T ss_pred             CCCcccccCCceEEeCCCCCcchhccCH
Confidence            9999876433221111223346678887

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.79  E-value=7.2e-19  Score=171.00  Aligned_cols=139  Identities=27%  Similarity=0.436  Sum_probs=110.2

Q ss_pred             CCccccceeccCCceEEEEEEccC----CcEEEEEEEeecc-----------------------------CccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHFSC-----------------------------SNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~~-----------------------------~~~~~~~lv~  431 (527)
                      ++|.+.+.||+|+||.||+|...+    ...||||......                             ...+..++||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~   85 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVM   85 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEE
Confidence            457888999999999999998643    3468999864210                             1124457999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++......+++..+..++.+++.|++|+|   +++++||||||+||+++.++.+|++|||+++.......
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  162 (270)
T cd05056          86 ELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY  162 (270)
T ss_pred             EcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeecccccc
Confidence            999999999999765556899999999999999999999   99999999999999999999999999999987654321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       ...+...++..|+||
T Consensus       163 -~~~~~~~~~~~y~aP  177 (270)
T cd05056         163 -YKASKGKLPIKWMAP  177 (270)
T ss_pred             -eecCCCCccccccCh
Confidence             112222344578887

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.79  E-value=1.1e-18  Score=171.78  Aligned_cols=139  Identities=26%  Similarity=0.392  Sum_probs=109.8

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVL  431 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~  431 (527)
                      ++++|.+.+.||+|+||.||+|.. .+++.||+|++...                              +..++..++||
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            467899999999999999999985 46889999987421                              12234567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+. +++.+.+......+.+.+...++.|++.||+|+|   +.+|+||||||+||+++.++.+|++|||+++.......
T Consensus        83 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  158 (291)
T cd07870          83 EYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ  158 (291)
T ss_pred             eccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCC
Confidence            9996 6777766554445677788889999999999999   89999999999999999999999999999986532221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .  .....++..|+||
T Consensus       159 ~--~~~~~~~~~y~aP  172 (291)
T cd07870         159 T--YSSEVVTLWYRPP  172 (291)
T ss_pred             C--CCCccccccccCC
Confidence            1  1223457789888

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.79  E-value=8.8e-19  Score=171.71  Aligned_cols=136  Identities=29%  Similarity=0.444  Sum_probs=109.2

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|++.+.||+|+||.||+|+.. +++.||+|++...                               +..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4788899999999999999864 6899999987421                               1234567899999


Q ss_pred             ccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++ |+|.+++....  ..+++.+...++.|++.||+|+|   +++|+||||||+||++++++.+||+|||+++.......
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  156 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR  156 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc
Confidence            98 58888876432  45788888999999999999999   99999999999999999999999999999986542211


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......+++.|+||
T Consensus       157 --~~~~~~~~~~y~aP  170 (285)
T cd07861         157 --VYTHEVVTLWYRAP  170 (285)
T ss_pred             --cccCCcccccccCh
Confidence              11223457789888

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.79  E-value=7.9e-19  Score=169.19  Aligned_cols=139  Identities=27%  Similarity=0.437  Sum_probs=112.3

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      .+|++.+.||+|+||.||+|....+..+|+|.+..                            .+......++||||+++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH   83 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC
Confidence            46888899999999999999987788999998642                            12233456799999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++......+++.....++.+++.|++|+|   +.+++||||||+||+++.++.+|++|||+++....... ....
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~  159 (256)
T cd05112          84 GCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY-TSST  159 (256)
T ss_pred             CcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcc-cccC
Confidence            9999999766556788888999999999999999   99999999999999999999999999999986543211 1111


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++.+|+||
T Consensus       160 ~~~~~~~~~aP  170 (256)
T cd05112         160 GTKFPVKWSSP  170 (256)
T ss_pred             CCccchhhcCH
Confidence            22345678887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.79  E-value=6.7e-19  Score=174.39  Aligned_cols=120  Identities=34%  Similarity=0.592  Sum_probs=99.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCc--EEEEEEEee-------------------------------ccCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGM--EFAIKVFHF-------------------------------SCSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~--~vavK~~~~-------------------------------~~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+.+ ++.  .+|+|.+..                               .+..++..++
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~l   85 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   85 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceE
Confidence            356888999999999999999864 444  457776532                               1223456789


Q ss_pred             EEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc
Q 035895          430 VLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~  494 (527)
                      ||||+++|+|.+++...+               ..+++.+...++.|++.|++|||   +++|+||||||+||++++++.
T Consensus        86 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~  162 (303)
T cd05088          86 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYV  162 (303)
T ss_pred             EEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCc
Confidence            999999999999997532               24678889999999999999999   999999999999999999999


Q ss_pred             EEEeeccccccc
Q 035895          495 AHLSDFGIAKLL  506 (527)
Q Consensus       495 ~kl~Dfg~a~~~  506 (527)
                      +|++|||+++..
T Consensus       163 ~kl~dfg~~~~~  174 (303)
T cd05088         163 AKIADFGLSRGQ  174 (303)
T ss_pred             EEeCccccCccc
Confidence            999999998743

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.78  E-value=1.1e-18  Score=169.48  Aligned_cols=142  Identities=30%  Similarity=0.416  Sum_probs=111.6

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALV  430 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv  430 (527)
                      +.+++.+.....||+|+||.||+|+. +++..||+|.+..                             .+..++..++|
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            44566676778999999999999985 4678899998642                             12344567899


Q ss_pred             EEeccCCcHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNYIL--DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~--~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~  507 (527)
                      |||+++++|.+++......+  +......++.|++.|++|||   +.+|+||||||+||+++. ++.++++|||.+....
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~  160 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA  160 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhheecc
Confidence            99999999999997653344  67778889999999999999   999999999999999986 6799999999987654


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  ......++..|+||
T Consensus       161 ~~~~--~~~~~~~~~~~~aP  178 (268)
T cd06624         161 GINP--CTETFTGTLQYMAP  178 (268)
T ss_pred             cCCC--ccccCCCCccccCh
Confidence            2211  11123467778887

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.78  E-value=1.2e-18  Score=171.99  Aligned_cols=136  Identities=32%  Similarity=0.498  Sum_probs=110.3

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCccceeEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDFRALV  430 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~~~lv  430 (527)
                      .|+..+.||+|+||.||+|... +++.||||.+...                                  +..++..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            3778899999999999999864 6899999987532                                  1123456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+ +|+|.+++......+++.....++.||++||+|||   +++|+||||||+||+++.++.++|+|||+++......
T Consensus        81 ~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841          81 FEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPN  156 (298)
T ss_pred             Eccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCC
Confidence            9999 89999999765446889999999999999999999   9999999999999999999999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      ..  .....++..|+||
T Consensus       157 ~~--~~~~~~~~~y~aP  171 (298)
T cd07841         157 RK--MTHQVVTRWYRAP  171 (298)
T ss_pred             cc--ccccccceeeeCH
Confidence            11  1122356678887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.78  E-value=1.4e-18  Score=168.49  Aligned_cols=139  Identities=28%  Similarity=0.373  Sum_probs=110.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCc--ccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSN--EDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~--~~~~  427 (527)
                      .+|++.+.||+|+||.||+|.. .++..||||.+...                                  +..  ....
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4688999999999999999986 46899999986420                                  011  2346


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++...+ .+++.....++.+++.||+|+|   +.+|+||||||+||+++.++.++++|||+++...
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~  157 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG-ALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ  157 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCccccccc
Confidence            78999999999999987543 4677788899999999999999   9999999999999999999999999999998654


Q ss_pred             CCCCc-cceeccccccccccC
Q 035895          508 GEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ..... .......++..|+||
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aP  178 (265)
T cd06652         158 TICLSGTGMKSVTGTPYWMSP  178 (265)
T ss_pred             cccccccccccCCCCccccCh
Confidence            22111 111223477889998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.78  E-value=6e-19  Score=179.33  Aligned_cols=133  Identities=30%  Similarity=0.407  Sum_probs=107.0

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCccceeEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSNEDFRALV  430 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~~~~~~lv  430 (527)
                      .|++.++||+|+||.|-+|.. ++++.||||+++..                                  ....+..+||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV  266 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV  266 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence            578899999999999999985 67999999998531                                  1234566899


Q ss_pred             EEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~~  507 (527)
                      +|.+.. +|++++...+ ..++......++.||+.||..||   ..+|||+||||+|||+.+  ...+||+|||.|....
T Consensus       267 fELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  267 FELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES  342 (586)
T ss_pred             ehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccccccC
Confidence            999865 9999997543 34778888899999999999999   999999999999999964  4589999999998765


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.-.  +   ..-+..|+||
T Consensus       343 q~vy--t---YiQSRfYRAP  357 (586)
T KOG0667|consen  343 QRVY--T---YIQSRFYRAP  357 (586)
T ss_pred             Ccce--e---eeeccccccc
Confidence            3322  1   1234568888

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.78  E-value=7.1e-19  Score=173.65  Aligned_cols=136  Identities=32%  Similarity=0.446  Sum_probs=111.9

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~  434 (527)
                      ..|++.+.||+|+||.||+|.. .+++.||+|.+..                             .+...+..++||||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            5689999999999999999985 5789999998742                             122345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++++|.+++.+  ..+++.+...++.+++.|++|||   +.+|+||||||+||+++.++.++++|||+++........  
T Consensus        99 ~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~--  171 (297)
T cd06656          99 AGGSLTDVVTE--TCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--  171 (297)
T ss_pred             CCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccC--
Confidence            99999999864  34688888999999999999999   999999999999999999999999999999876433211  


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....+++.|+||
T Consensus       172 ~~~~~~~~~y~aP  184 (297)
T cd06656         172 RSTMVGTPYWMAP  184 (297)
T ss_pred             cCcccCCccccCH
Confidence            1223467778887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.78  E-value=1.2e-18  Score=167.95  Aligned_cols=135  Identities=29%  Similarity=0.484  Sum_probs=110.6

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|... |+.||+|.+...                            +..++..++||||++
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecC
Confidence            457889999999999999999875 788999987431                            223456789999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +++|.+++.... ..+++.....++.|++.|+.|+|   +++++||||||+||+++.++.+|++|||.++.......   
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~---  157 (256)
T cd05039          84 KGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD---  157 (256)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEcccccccccccccc---
Confidence            999999987543 25789999999999999999999   99999999999999999999999999999987642211   


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                        ....+..|+||
T Consensus       158 --~~~~~~~~~ap  168 (256)
T cd05039         158 --SGKLPVKWTAP  168 (256)
T ss_pred             --cCCCcccccCc
Confidence              12234567776

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.78  E-value=9.4e-19  Score=169.79  Aligned_cols=138  Identities=27%  Similarity=0.489  Sum_probs=112.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||||.+..                                .+..++..++||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            5788899999999999999985 5789999997642                                112334678999


Q ss_pred             EeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++++|.+++..   ....+++.....++.+++.|++|||   +++++|+||||+||+++.++.++++|||+++....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            99999999998864   2345788888999999999999999   99999999999999999999999999999887643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  ......++..|+||
T Consensus       159 ~~~--~~~~~~~~~~~~ap  175 (267)
T cd08229         159 KTT--AAHSLVGTPYYMSP  175 (267)
T ss_pred             CCc--ccccccCCcCccCH
Confidence            221  11123467788887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.78  E-value=1.6e-18  Score=168.38  Aligned_cols=137  Identities=23%  Similarity=0.325  Sum_probs=111.2

Q ss_pred             hhhcCCcccccee--ccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------cCccceeEEEEE
Q 035895          381 LRATDGFSANNLI--GRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------CSNEDFRALVLE  432 (527)
Q Consensus       381 ~~~~~~~~~~~~l--g~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~~~~~~~~lv~e  432 (527)
                      ....+.|++.+.+  |+|+||.||+++. .++..+|+|.+...                         +..++..++|||
T Consensus        10 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e   89 (267)
T PHA03390         10 VQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMD   89 (267)
T ss_pred             HHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEE
Confidence            3345667776666  9999999999986 46788999986421                         123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++...+ .+++.+...++.|++.|++|+|   +.+++||||||+||+++.++ .++++|||+++...... 
T Consensus        90 ~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~-  164 (267)
T PHA03390         90 YIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPS-  164 (267)
T ss_pred             cCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCc-
Confidence            999999999987654 6789999999999999999999   99999999999999999888 99999999988664321 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                           ...++..|+||
T Consensus       165 -----~~~~~~~y~aP  175 (267)
T PHA03390        165 -----CYDGTLDYFSP  175 (267)
T ss_pred             -----cCCCCCcccCh
Confidence                 12467778887

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.78  E-value=1.1e-18  Score=172.32  Aligned_cols=119  Identities=31%  Similarity=0.571  Sum_probs=98.4

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCc--EEEEEEEeec-------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGM--EFAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~--~vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||.||+|..+ ++.  .+|+|.+...                               +...+..++|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            57889999999999999999864 333  4688876421                               1123456799


Q ss_pred             EEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          431 LEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                      |||+++|+|.+++....               ..+++.....++.|++.|++|+|   +++|+||||||+||++++++.+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeE
Confidence            99999999999986532               23678888999999999999999   9999999999999999999999


Q ss_pred             EEeeccccccc
Q 035895          496 HLSDFGIAKLL  506 (527)
Q Consensus       496 kl~Dfg~a~~~  506 (527)
                      |++|||+++..
T Consensus       159 kl~dfg~~~~~  169 (297)
T cd05089         159 KIADFGLSRGE  169 (297)
T ss_pred             EECCcCCCccc
Confidence            99999998743

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.78  E-value=1e-18  Score=168.90  Aligned_cols=140  Identities=20%  Similarity=0.400  Sum_probs=111.8

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .++|++.+.||+|+||.||+|...++..+|+|.+...                           .......+++|||+++
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK   84 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCC
Confidence            4678999999999999999999877888999976421                           0112456899999999


Q ss_pred             CcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |+|.+++.+. +...++.++..++.+++.|++|+|   +.+++||||||+||+++.++.+|++|||.++.+..... ...
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~  160 (260)
T cd05073          85 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAR  160 (260)
T ss_pred             CcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCc-ccc
Confidence            9999999764 345788888999999999999999   89999999999999999999999999999987643221 111


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       161 ~~~~~~~~y~~P  172 (260)
T cd05073         161 EGAKFPIKWTAP  172 (260)
T ss_pred             cCCcccccccCH
Confidence            122345568887

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.78  E-value=6.6e-19  Score=192.23  Aligned_cols=144  Identities=22%  Similarity=0.346  Sum_probs=111.8

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------c--Cccce
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------C--SNEDF  426 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~--~~~~~  426 (527)
                      ....++|++.+.||+|+||.||+|+.. ++..||+|++...                               +  ...+.
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            344678999999999999999999864 5778999986421                               0  12245


Q ss_pred             eEEEEEeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCC----CCCeEecCCCCCCeeeCC--------
Q 035895          427 RALVLEYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGY----STPIIHCDLKPHNKLLDD--------  491 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~----~~~iiHrdlk~~nill~~--------  491 (527)
                      .++||||+++|+|.++|...   ...+++.....|+.||+.||+|||...    .++||||||||+|||++.        
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence            78999999999999998652   245788899999999999999999321    156999999999999964        


Q ss_pred             ---------CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 ---------NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ---------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                               .+.+||+|||+++.+.....   .....+|+.||||
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~l~~~s~---~~s~vGTp~YmAP  210 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKNIGIESM---AHSCVGTPYYWSP  210 (1021)
T ss_pred             cccccccCCCCceEEccCCcccccccccc---ccccCCCccccCH
Confidence                     24589999999987643221   2234688999998

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.78  E-value=7.3e-19  Score=172.02  Aligned_cols=139  Identities=29%  Similarity=0.456  Sum_probs=108.4

Q ss_pred             CccccceeccCCceEEEEEEc------cCCcEEEEEEEee-----------------------------ccCccceeEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF-----------------------------SCSNEDFRALV  430 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~-----------------------------~~~~~~~~~lv  430 (527)
                      +|...+.||+|+||.||+|..      .++..+|+|.+..                             .+...+..++|
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   85 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMV   85 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEE
Confidence            467789999999999999963      2456789997632                             12234567899


Q ss_pred             EEeccCCcHHHHHHhcC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          431 LEYTTNGSLEKVLYSSN--------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                      |||+++|+|.+++...+              ..+++.+...++.|++.|++|||   +++++||||||+||++++++.+|
T Consensus        86 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~k  162 (280)
T cd05092          86 FEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVK  162 (280)
T ss_pred             EecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEE
Confidence            99999999999987543              23678889999999999999999   99999999999999999999999


Q ss_pred             EeecccccccCCCCCccceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++|||+++...............+++.|+||
T Consensus       163 L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05092         163 IGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  193 (280)
T ss_pred             ECCCCceeEcCCCceeecCCCccccccccCH
Confidence            9999999865432211111122345678887

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.78  E-value=7.7e-19  Score=173.34  Aligned_cols=136  Identities=32%  Similarity=0.444  Sum_probs=111.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ..|+..+.||+|+||.||+|+. .+++.||+|.+...                             +......++||||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            4688899999999999999985 56889999987431                             12345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++..  ..+++.+...++.|++.|++|+|   +.+|+||||||+||+++.++.+|++|||+++........  
T Consensus       100 ~~~~L~~~~~~--~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~--  172 (296)
T cd06654         100 AGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--  172 (296)
T ss_pred             CCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhccccccc--
Confidence            99999999854  34688889999999999999999   999999999999999999999999999998865432211  


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       173 ~~~~~~~~~y~aP  185 (296)
T cd06654         173 RSTMVGTPYWMAP  185 (296)
T ss_pred             cCcccCCccccCH
Confidence            1223567789988

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.78  E-value=8.6e-19  Score=169.14  Aligned_cols=127  Identities=26%  Similarity=0.425  Sum_probs=101.2

Q ss_pred             ceeccCCceEEEEEEccCC-----------cEEEEEEEee----------------------------ccCccceeEEEE
Q 035895          391 NLIGRGSFGSVYKARLQDG-----------MEFAIKVFHF----------------------------SCSNEDFRALVL  431 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~-----------~~vavK~~~~----------------------------~~~~~~~~~lv~  431 (527)
                      +.||+|+||.||+|.....           ..||+|.+..                            .+.. +..++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            4689999999999987542           2577886532                            1222 4567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-------cEEEeeccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-------VAHLSDFGIAK  504 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-------~~kl~Dfg~a~  504 (527)
                      ||+++|+|.+++......+++..+..++.|++.||+|||   +++|+||||||+||+++.++       .+|++|||+++
T Consensus        80 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          80 EYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             EcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence            999999999999876556888889999999999999999   99999999999999999887       79999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....      ....++..|+||
T Consensus       157 ~~~~~------~~~~~~~~y~aP  173 (259)
T cd05037         157 TVLSR------EERVERIPWIAP  173 (259)
T ss_pred             ccccc------cccccCCCccCh
Confidence            75431      112345567777

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=7.9e-19  Score=177.58  Aligned_cols=132  Identities=32%  Similarity=0.443  Sum_probs=107.0

Q ss_pred             ceeccCCceEEEEEEcc-CCcEEEEEEEee-----------------------------ccCccceeEEEEEeccCCcHH
Q 035895          391 NLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYTTNGSLE  440 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~~~g~L~  440 (527)
                      -++|+|.||+||-|+.. +...+|||-+..                             +|+..++.-|.||-++||+|.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            47999999999999964 567799997632                             355667778999999999999


Q ss_pred             HHHHhcCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccccCCCCCccceec
Q 035895          441 KVLYSSNYIL--DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQ  517 (527)
Q Consensus       441 ~~l~~~~~~~--~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~  517 (527)
                      ++++..=+.+  .....-.+..||.+||.|||   ...|||||||-.|+|++ -.|.+||+|||.++.+.+-.  .....
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin--P~TET  735 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN--PCTET  735 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCC--ccccc
Confidence            9998653334  34445568899999999999   99999999999999997 68999999999999875432  22234


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      +.||+-||||
T Consensus       736 FTGTLQYMAP  745 (1226)
T KOG4279|consen  736 FTGTLQYMAP  745 (1226)
T ss_pred             cccchhhhCh
Confidence            6799999998

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.78  E-value=2.9e-19  Score=178.79  Aligned_cols=136  Identities=28%  Similarity=0.466  Sum_probs=114.7

Q ss_pred             cccceeccCCceEEEEEEccC---C--cEEEEEEEeeccCcc-----------------------------ceeEEEEEe
Q 035895          388 SANNLIGRGSFGSVYKARLQD---G--MEFAIKVFHFSCSNE-----------------------------DFRALVLEY  433 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~---~--~~vavK~~~~~~~~~-----------------------------~~~~lv~ey  433 (527)
                      +..++||+|.||.||+|...+   |  ..||||..+..|..+                             ...+||||.
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL  471 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMEL  471 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEec
Confidence            456889999999999998532   2  358999987755432                             234699999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++-|.|+.++...+..++......++.||+.|++|||   +.++|||||-.+|||+.....+|++|||++|.+.++..+.
T Consensus       472 ~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYk  548 (974)
T KOG4257|consen  472 APLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYK  548 (974)
T ss_pred             ccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCcceeeecccchhhhccccchhh
Confidence            9999999999988888999889999999999999999   9999999999999999999999999999999997665443


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .+...-.+.||||
T Consensus       549 -aS~~kLPIKWmaP  561 (974)
T KOG4257|consen  549 -ASRGKLPIKWMAP  561 (974)
T ss_pred             -ccccccceeecCc
Confidence             3344457789998

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.78  E-value=1.2e-18  Score=168.07  Aligned_cols=132  Identities=27%  Similarity=0.405  Sum_probs=103.9

Q ss_pred             eeccCCceEEEEEEc---cCCcEEEEEEEeec------------------------------cCccceeEEEEEeccCCc
Q 035895          392 LIGRGSFGSVYKARL---QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEYTTNGS  438 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~---~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~~g~  438 (527)
                      .||+|+||.||+|.+   .++..||+|++...                              ....+..++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~   81 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP   81 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence            589999999999964   35788999987421                              012345579999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc-eec
Q 035895          439 LEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT-QTQ  517 (527)
Q Consensus       439 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~-~~~  517 (527)
                      |.+++... ..+++.....++.|++.|++|+|   +++|+||||||+||++++++.+|++|||+++.......... .+.
T Consensus        82 L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  157 (257)
T cd05116          82 LNKFLQKN-KHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTH  157 (257)
T ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCC
Confidence            99998654 35788889999999999999999   99999999999999999999999999999987643322111 112


Q ss_pred             cccccccccC
Q 035895          518 TLAIIGYMAP  527 (527)
Q Consensus       518 ~~~t~~y~aP  527 (527)
                      ..++..|+||
T Consensus       158 ~~~~~~y~aP  167 (257)
T cd05116         158 GKWPVKWYAP  167 (257)
T ss_pred             CCCCccccCH
Confidence            2235678887

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-19  Score=188.93  Aligned_cols=139  Identities=31%  Similarity=0.503  Sum_probs=113.4

Q ss_pred             CccccceeccCCceEEEEEEc------cCCcEEEEEEEee------------------------------ccCccceeEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF------------------------------SCSNEDFRAL  429 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~------------------------------~~~~~~~~~l  429 (527)
                      +....+.||+|+||+||+|+.      ++.+.||||.++.                              .|...+-.++
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~M  566 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCM  566 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEE
Confidence            345668899999999999974      3456799998753                              2556667789


Q ss_pred             EEEeccCCcHHHHHHhcC---------C----CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          430 VLEYTTNGSLEKVLYSSN---------Y----ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~---------~----~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                      |+|||..|||.++|+...         .    .++..+.+.||.|||.|++||-   ++.+|||||-.+|+|+.++..||
T Consensus       567 vFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~l~VK  643 (774)
T KOG1026|consen  567 VFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGENLVVK  643 (774)
T ss_pred             EEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccceEEE
Confidence            999999999999997531         1    2778899999999999999999   99999999999999999999999


Q ss_pred             EeecccccccCCCCCccceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+|||++|.+-..+.+.......-.++||+|
T Consensus       644 IsDfGLsRdiYssDYYk~~~~t~lPIRWMpp  674 (774)
T KOG1026|consen  644 ISDFGLSRDIYSSDYYKVRGNTLLPIRWMPP  674 (774)
T ss_pred             ecccccchhhhhhhhhcccCCceeeeecCCH
Confidence            9999999976544444333334457889998

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.78  E-value=1.5e-18  Score=168.16  Aligned_cols=138  Identities=23%  Similarity=0.401  Sum_probs=110.9

Q ss_pred             CccccceeccCCceEEEEEEccCCcEEEEEEEee-----------------------------------ccCccceeEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-----------------------------------SCSNEDFRALV  430 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-----------------------------------~~~~~~~~~lv  430 (527)
                      +|+..+.||+|+||.||+|...+++.+|+|.+..                                   .+...+..++|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            4778899999999999999988899999997642                                   12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++.+.+ .+++.....++.|++.|++|+|   +.+|+|+||||+||++++++.++++|||+++......
T Consensus        81 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  156 (265)
T cd06631          81 MEFVPGGSISSILNRFG-PLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVG  156 (265)
T ss_pred             EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcc
Confidence            99999999999997543 4678888889999999999999   8999999999999999999999999999988653211


Q ss_pred             Cc----cceeccccccccccC
Q 035895          511 QS----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~----~~~~~~~~t~~y~aP  527 (527)
                      ..    .......++..|+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p  177 (265)
T cd06631         157 LHGTHSNMLKSMHGTPYWMAP  177 (265)
T ss_pred             ccccccccccccCCCccccCh
Confidence            10    011123467788887

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.78  E-value=1.7e-18  Score=169.64  Aligned_cols=136  Identities=27%  Similarity=0.417  Sum_probs=109.8

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      .|+..+.||+|+||.||+|+.. +|+.||+|++...                               .......++||||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            3778899999999999999864 6899999987421                               1123456899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++ ++|.+++......+++.....++.||++|++|||   +++|+||||||+||+++.++.+|++|||+++........ 
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-  155 (284)
T cd07839          81 CD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRC-  155 (284)
T ss_pred             CC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCC-
Confidence            97 4788887665566899999999999999999999   999999999999999999999999999999865432211 


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       156 -~~~~~~~~~y~aP  168 (284)
T cd07839         156 -YSAEVVTLWYRPP  168 (284)
T ss_pred             -cCCCccccCCcCh
Confidence             1223467789988

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.78  E-value=1.4e-18  Score=170.08  Aligned_cols=148  Identities=28%  Similarity=0.413  Sum_probs=117.1

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------c---
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------C---  421 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~---  421 (527)
                      .+..++..+.+.|++.+.||+|+||.||+|+. .+++.||+|++...                             +   
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            34555566778899999999999999999986 56889999986321                             0   


Q ss_pred             ---CccceeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          422 ---SNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       422 ---~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                         ...+..++||||+++|+|.+++.... ..+++.....++.|++.|++|+|   +++|+|||+||+||++++++.+++
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~l  162 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKL  162 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEE
Confidence               01346689999999999999987533 34677778889999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+++.......  ......++..|+||
T Consensus       163 ~dfg~~~~~~~~~~--~~~~~~~~~~y~aP  190 (282)
T cd06636         163 VDFGVSAQLDRTVG--RRNTFIGTPYWMAP  190 (282)
T ss_pred             eeCcchhhhhcccc--CCCcccccccccCH
Confidence            99999886532211  11224567789887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.78  E-value=1.4e-18  Score=166.90  Aligned_cols=114  Identities=33%  Similarity=0.538  Sum_probs=99.1

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCccceeEEEEEeccCCcHH
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNEDFRALVLEYTTNGSLE  440 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~~g~L~  440 (527)
                      +.||+|+||.||+|...+++.||+|.+...                              +......++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            479999999999999877999999986421                              22344568999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          441 KVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       441 ~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      +++......+++.....++.+++.|++|+|   +++++||||||+||+++.++.+|++|||+++...
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~  144 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEE  144 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeecccccccc
Confidence            999765556788888999999999999999   9999999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.78  E-value=1.6e-18  Score=171.73  Aligned_cols=117  Identities=31%  Similarity=0.505  Sum_probs=100.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|+..+.||+|+||.||+|+.. +++.||+|.+...                                +..++..++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            36889999999999999999864 5789999986421                                12345668999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||++||+|.+++...+ .+++.....++.+++.|++|+|   +++++||||||+||+++.++.+|++|||+++.
T Consensus        81 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          81 EYVEGGDCATLLKNIG-ALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            9999999999997653 5778888889999999999999   99999999999999999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>PHA02988 hypothetical protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=171.08  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=104.6

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeec--------------------------------cCc----cceeEEEEEec
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------------CSN----EDFRALVLEYT  434 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~--------------------------------~~~----~~~~~lv~ey~  434 (527)
                      ..||+|++|.||+|.. +|+.||||++...                                +.+    ....++||||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            6899999999999998 5889999987421                                111    23567999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++... ..+++.....++.+++.|++|+|   + .+++||||||+||++++++.+|++|||+++......   
T Consensus       105 ~~g~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~---  177 (283)
T PHA02988        105 TRGYLREVLDKE-KDLSFKTKLDMAIDCCKGLYNLY---KYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP---  177 (283)
T ss_pred             CCCcHHHHHhhC-CCCChhHHHHHHHHHHHHHHHHH---hcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc---
Confidence            999999999764 45788889999999999999999   6 488899999999999999999999999998764321   


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....++..|+||
T Consensus       178 --~~~~~~~~y~aP  189 (283)
T PHA02988        178 --FKNVNFMVYFSY  189 (283)
T ss_pred             --ccccCcccccCH
Confidence              123467789998

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.78  E-value=1.9e-18  Score=168.18  Aligned_cols=137  Identities=30%  Similarity=0.435  Sum_probs=109.5

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEee---------------------------------------ccCccce
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF---------------------------------------SCSNEDF  426 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~---------------------------------------~~~~~~~  426 (527)
                      |...+.||+|+||.||+|.. .+++.||+|.++.                                       .+...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            66788999999999999985 4688999997642                                       1122345


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+++|+|.+++... ..+++..+..++.+++.|++|+|   +++++||||+|+||++++++.++++|||+++..
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeeccccccc
Confidence            67999999999999998765 35788888889999999999999   899999999999999999999999999999865


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .............++..|+||
T Consensus       159 ~~~~~~~~~~~~~~~~~y~~P  179 (272)
T cd06629         159 DDIYDNDQNMSMQGSVFWMAP  179 (272)
T ss_pred             cccccccccccccCCccccCH
Confidence            422111112233467778887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.78  E-value=1.5e-18  Score=159.29  Aligned_cols=113  Identities=25%  Similarity=0.290  Sum_probs=91.9

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeeccCc-------------------------------------------c--
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSN-------------------------------------------E--  424 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~~~-------------------------------------------~--  424 (527)
                      .+.||+|+||.||+|+..+|+.||||+++.....                                           .  
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999888999999997642100                                           0  


Q ss_pred             --------ceeEEEEEeccCCcHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCc
Q 035895          425 --------DFRALVLEYTTNGSLEKV-LYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       425 --------~~~~lv~ey~~~g~L~~~-l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~  494 (527)
                              ...++||||++|+++... +..  ..++..+...++.+++.++.|+|   . .+|+||||||+||+++ ++.
T Consensus        82 ~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlkP~NIll~-~~~  155 (190)
T cd05145          82 PVPEPILLKKNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLSEYNILYH-DGK  155 (190)
T ss_pred             CCceEEEecCCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCChhhEEEE-CCC
Confidence                    012699999999865433 322  34667788899999999999999   7 9999999999999999 889


Q ss_pred             EEEeecccccccCC
Q 035895          495 AHLSDFGIAKLLTG  508 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~  508 (527)
                      ++++|||+|+....
T Consensus       156 ~~liDFG~a~~~~~  169 (190)
T cd05145         156 PYIIDVSQAVELDH  169 (190)
T ss_pred             EEEEEcccceecCC
Confidence            99999999987754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.1e-20  Score=169.97  Aligned_cols=141  Identities=25%  Similarity=0.462  Sum_probs=113.9

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cC--------
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CS--------  422 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~--------  422 (527)
                      ....|+....||+|.||+||+|+.+ +|+.||+|++-+.                               |.        
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            3456777889999999999999864 5788898864210                               11        


Q ss_pred             ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      .....++||++|+. ||.-++......++..+..+++.++..||.|+|   ...|+|||+||+|+|++.+|.+|++|||+
T Consensus        95 ~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGl  170 (376)
T KOG0669|consen   95 DRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGL  170 (376)
T ss_pred             ccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeecccc
Confidence            11236799999985 999999877677888889999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCC--CccceeccccccccccC
Q 035895          503 AKLLTGED--QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~--~~~~~~~~~~t~~y~aP  527 (527)
                      ||.++...  .....|..+.|+||..|
T Consensus       171 ar~fs~~~n~~kprytnrvvTLwYrpp  197 (376)
T KOG0669|consen  171 ARAFSTSKNVVKPRYTNRVVTLWYRPP  197 (376)
T ss_pred             ccceecccccCCCCcccceeeeecCCH
Confidence            98775432  22334556779999887

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.78  E-value=2.2e-18  Score=166.16  Aligned_cols=137  Identities=24%  Similarity=0.413  Sum_probs=111.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      .|+..+.||+|+||.||.++. .+++.+|+|.+...                               +..++..++||||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            478889999999999999985 56889999976421                               2234566799999


Q ss_pred             ccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++... +..+++.+...++.+++.|++|+|   +.+++||||||+||++++++.+|++|||+++....... 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~-  156 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS-  156 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc-
Confidence            9999999998764 345788889999999999999999   89999999999999999999999999999987643321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......++..|+||
T Consensus       157 -~~~~~~~~~~y~ap  170 (256)
T cd08221         157 -MAETVVGTPYYMSP  170 (256)
T ss_pred             -cccccCCCccccCH
Confidence             11234467788887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.78  E-value=1.9e-18  Score=169.33  Aligned_cols=137  Identities=31%  Similarity=0.413  Sum_probs=109.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      +.|+..+.||+|+||.||+|+.+ +++.||+|++...                               +...+..++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            46888999999999999999875 6899999986421                               112345679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++++.|..++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.++++|||++.........
T Consensus        81 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  156 (286)
T cd07847          81 YCDHTVLNELEKNP-RGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD  156 (286)
T ss_pred             ccCccHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCCCccc
Confidence            99999888876543 35788899999999999999999   899999999999999999999999999999876543211


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++..|+||
T Consensus       157 --~~~~~~~~~~~aP  169 (286)
T cd07847         157 --YTDYVATRWYRAP  169 (286)
T ss_pred             --ccCcccccccCCH
Confidence              1122356678877

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.78  E-value=1.8e-18  Score=166.61  Aligned_cols=137  Identities=31%  Similarity=0.546  Sum_probs=110.0

Q ss_pred             ccccceeccCCceEEEEEEccC-----CcEEEEEEEeec------------------------------cCccceeEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQD-----GMEFAIKVFHFS------------------------------CSNEDFRALVL  431 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~-----~~~vavK~~~~~------------------------------~~~~~~~~lv~  431 (527)
                      |++.+.||+|+||.||+|+...     +..||+|++...                              +...+..+++|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            3567899999999999998753     488999987532                              12234678999


Q ss_pred             EeccCCcHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~-~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||+++++|.+++...... +++.+...++.|++.|++|+|   +.+++||||||+||++++++.++++|||+++......
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence            999999999999765433 789999999999999999999   9999999999999999999999999999998765432


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .... ....++..|+||
T Consensus       158 ~~~~-~~~~~~~~y~~P  173 (258)
T smart00219      158 YYKK-KGGKLPIRWMAP  173 (258)
T ss_pred             cccc-ccCCCcccccCh
Confidence            2211 122356778887

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.78  E-value=1.4e-18  Score=170.39  Aligned_cols=137  Identities=30%  Similarity=0.430  Sum_probs=111.4

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee-------------------------------ccCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-------------------------------~~~~~~~~~lv~e  432 (527)
                      ++|+..+.||+|+||.||+|..+ +++.||+|++..                               .+..++..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            46888999999999999999975 589999998632                               1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++++.|..+.... ..+++.+...++.+++.|++|||   +.+|+|||++|+||++++++.++++|||+++....... 
T Consensus        81 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-  155 (286)
T cd07846          81 FVDHTVLDDLEKYP-NGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE-  155 (286)
T ss_pred             cCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc-
Confidence            99999998876543 34789999999999999999999   89999999999999999999999999999987643321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ..+...++.+|+||
T Consensus       156 -~~~~~~~~~~y~aP  169 (286)
T cd07846         156 -VYTDYVATRWYRAP  169 (286)
T ss_pred             -ccCcccceeeccCc
Confidence             11223467788887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.78  E-value=1.5e-18  Score=167.94  Aligned_cols=134  Identities=27%  Similarity=0.477  Sum_probs=103.4

Q ss_pred             ceeccCCceEEEEEEcc----CCcEEEEEEEee------------------------------cc-CccceeEEEEEecc
Q 035895          391 NLIGRGSFGSVYKARLQ----DGMEFAIKVFHF------------------------------SC-SNEDFRALVLEYTT  435 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~----~~~~vavK~~~~------------------------------~~-~~~~~~~lv~ey~~  435 (527)
                      +.||+|+||.||+|...    +...||+|.+..                              .+ ..++..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999853    245799998631                              01 12345679999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc--
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM--  513 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~--  513 (527)
                      +|+|.+++.......++.....++.+++.|++|+|   +.+++||||||+||++++++.+|++|||+++.........  
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence            99999999765555677788889999999999999   8999999999999999999999999999998654321110  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       158 ~~~~~~~~~~y~aP  171 (262)
T cd05058         158 NHTGAKLPVKWMAL  171 (262)
T ss_pred             ccccCcCCccccCh
Confidence            11122345678887

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.78  E-value=1.9e-18  Score=172.24  Aligned_cols=133  Identities=25%  Similarity=0.425  Sum_probs=101.8

Q ss_pred             ceeccCCceEEEEEEcc---CCcEEEEEEEeec---------------------------c--CccceeEEEEEeccCCc
Q 035895          391 NLIGRGSFGSVYKARLQ---DGMEFAIKVFHFS---------------------------C--SNEDFRALVLEYTTNGS  438 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~---~~~~vavK~~~~~---------------------------~--~~~~~~~lv~ey~~~g~  438 (527)
                      ..||+|+||.||+|+..   ++..||+|.+...                           +  ..+...++||||+++ +
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~   85 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-D   85 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-c
Confidence            58999999999999864   4578999986421                           1  123456799999875 7


Q ss_pred             HHHHHHhc--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee----CCCCcEEEeeccccccc
Q 035895          439 LEKVLYSS--------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       439 L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~Dfg~a~~~  506 (527)
                      |.+++...        ...+++.....++.|++.||+|||   +.+|+||||||+||++    ++++.+||+|||+|+..
T Consensus        86 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~  162 (317)
T cd07867          86 LWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF  162 (317)
T ss_pred             HHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceecc
Confidence            87776421        123677788899999999999999   9999999999999999    46689999999999876


Q ss_pred             CCCCCc-cceeccccccccccC
Q 035895          507 TGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ...... .......+|.+|+||
T Consensus       163 ~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07867         163 NSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             CCCcccccccCcceecccccCc
Confidence            533211 112234578899998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.78  E-value=1.2e-18  Score=171.73  Aligned_cols=139  Identities=27%  Similarity=0.409  Sum_probs=113.2

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCcc--ceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNE--DFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~--~~~~  428 (527)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+...                               +...  +..+
T Consensus         3 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           3 SVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             chhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            3467999999999999999999875 6889999987421                               1112  5678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++ +|.+++......+++.+...++.|++.||+|||   +.+++||||||+||++++++.+|++|||+++....
T Consensus        83 lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  158 (293)
T cd07843          83 MVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYGS  158 (293)
T ss_pred             EEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence            99999984 999988765556889999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  ......++..|+||
T Consensus       159 ~~~--~~~~~~~~~~~~aP  175 (293)
T cd07843         159 PLK--PYTQLVVTLWYRAP  175 (293)
T ss_pred             Ccc--ccccccccccccCc
Confidence            321  11223457789988

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.77  E-value=1.9e-18  Score=168.95  Aligned_cols=131  Identities=28%  Similarity=0.395  Sum_probs=106.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|+..+.||+|+||.||+|+. .+++.||+|++...                              +...+..++||||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            3578889999999999999985 57889999987421                              1223456799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|..+.     .+++.....++.+++.|++|+|   +.+|+|+||||+||+++.++.++++|||++.......   
T Consensus        81 ~~~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~---  149 (279)
T cd06619          81 MDGGSLDVYR-----KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI---  149 (279)
T ss_pred             CCCCChHHhh-----cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc---
Confidence            9999997542     3567777889999999999999   9999999999999999999999999999998664321   


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       150 -~~~~~~~~~y~aP  162 (279)
T cd06619         150 -AKTYVGTNAYMAP  162 (279)
T ss_pred             -ccCCCCChhhcCc
Confidence             2234577889988

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.2e-19  Score=166.39  Aligned_cols=140  Identities=29%  Similarity=0.369  Sum_probs=116.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee---------------------------------ccCcccee
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF---------------------------------SCSNEDFR  427 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~---------------------------------~~~~~~~~  427 (527)
                      ....+|...++||+|+|++|..+++ ++.+.+|+|+++.                                 +...+...
T Consensus       247 l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrl  326 (593)
T KOG0695|consen  247 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRL  326 (593)
T ss_pred             cccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceE
Confidence            3457899999999999999999996 5688999998642                                 22445667


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++|.||++||+|.-+++.. ..++...+..+..+|..||.|||   +++||.||+|..|+|+|..|.+|++|+|+++.--
T Consensus       327 ffvieyv~ggdlmfhmqrq-rklpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke~l  402 (593)
T KOG0695|consen  327 FFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL  402 (593)
T ss_pred             EEEEEEecCcceeeehhhh-hcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhcCC
Confidence            8999999999999888754 35677777789999999999999   9999999999999999999999999999998643


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  +....+||+.|+||
T Consensus       403 ~~gd--~tstfcgtpnyiap  420 (593)
T KOG0695|consen  403 GPGD--TTSTFCGTPNYIAP  420 (593)
T ss_pred             CCCc--ccccccCCCcccch
Confidence            2221  22347899999998

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.77  E-value=2.2e-18  Score=168.72  Aligned_cols=140  Identities=27%  Similarity=0.436  Sum_probs=110.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-----CCcEEEEEEEeec------------------------------cCc--ccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-----DGMEFAIKVFHFS------------------------------CSN--EDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-----~~~~vavK~~~~~------------------------------~~~--~~~~  427 (527)
                      +.|+..+.||+|+||.||+|+..     +++.||||++...                              +..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            45778899999999999999853     4688999987421                              111  2356


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++......+++.....++.+++.||+|+|   +.+++||||||+||+++.++.++++|||.++...
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            7999999999999999876556899999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCCccc-eeccccccccccC
Q 035895          508 GEDQSMT-QTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~-~~~~~~t~~y~aP  527 (527)
                      ....... .....++..|+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~P  181 (284)
T cd05038         161 EDKDYYYVKEPGESPIFWYAP  181 (284)
T ss_pred             cCCcceeccCCCCCcccccCc
Confidence            3322111 1112234457776

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.77  E-value=1.9e-18  Score=168.46  Aligned_cols=139  Identities=21%  Similarity=0.379  Sum_probs=109.7

Q ss_pred             CCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~~~~  428 (527)
                      ++|+..+.||+|+||.||+|+.+      +.+.||+|.+..                              .+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            56888999999999999999853      346799997632                              123345678


Q ss_pred             EEEEeccCCcHHHHHHhcC--------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          429 LVLEYTTNGSLEKVLYSSN--------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~--------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      +||||+++|+|.+++....        ..+++.++..++.+++.||+|||   +.+|+||||||+||++++++.++++||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEccc
Confidence            9999999999999987543        14789999999999999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++....... .......++..|+||
T Consensus       162 ~~~~~~~~~~~-~~~~~~~~~~~y~~P  187 (275)
T cd05046         162 SLSKDVYNSEY-YKLRNALIPLRWLAP  187 (275)
T ss_pred             ccccccCcccc-cccCCceeEEeecCh
Confidence            99876532211 111223355668887

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.77  E-value=2.9e-18  Score=165.27  Aligned_cols=134  Identities=34%  Similarity=0.416  Sum_probs=109.9

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCccceeEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDFRALVL  431 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~~~lv~  431 (527)
                      |+..+.||+|+||+||+|... +++.||+|.+...                                  +...+..++||
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            667789999999999999875 7899999986431                                  12234567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++++|.+++...+ .+++.....++.+++.|++|+|   +.+|+|+||+|+||+++.++.+|++|||+++...... 
T Consensus        82 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-  156 (258)
T cd06632          82 ELVPGGSLAKLLKKYG-SFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS-  156 (258)
T ss_pred             EecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceeccccc-
Confidence            9999999999987643 4788888899999999999999   9999999999999999999999999999988764322 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......++..|+||
T Consensus       157 --~~~~~~~~~~y~~p  170 (258)
T cd06632         157 --FAKSFKGSPYWMAP  170 (258)
T ss_pred             --cccccCCCcceeCH
Confidence              11234467778887

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=3.2e-18  Score=170.51  Aligned_cols=120  Identities=34%  Similarity=0.482  Sum_probs=103.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      ++|+..+.||+|+||.||+|... +++.||+|.+...                                +...+..++||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36888999999999999999875 5899999987421                                12334678999


Q ss_pred             EeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          432 EYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       432 ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ||+++++|.+++... +..+++.....++.|++.||+|+|   +.+++||||||+||+++.++.++++|||++....
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  154 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSD  154 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence            999999999998753 346788888899999999999999   9999999999999999999999999999987653

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=7.1e-19  Score=172.49  Aligned_cols=137  Identities=25%  Similarity=0.360  Sum_probs=114.9

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      +-|.+.+.||+|.|++|-+|++ -+|+.||||++...                               ...+...|+|.|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            3488889999999999999986 58999999998531                               123345689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      .-.+|||+++|-+++..+...-+.+++.||..|+.|+|   +..+|||||||+|+.+-+ -|-+|++|||++-.+.+...
T Consensus        98 LGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k  174 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK  174 (864)
T ss_pred             ecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCCCcch
Confidence            99999999999888777888888999999999999999   888999999999999875 58999999999977654332


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         -+..+|++.|-||
T Consensus       175 ---L~TsCGSLAYSAP  187 (864)
T KOG4717|consen  175 ---LTTSCGSLAYSAP  187 (864)
T ss_pred             ---hhcccchhhccCc
Confidence               2346788999988

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.77  E-value=1.5e-18  Score=167.09  Aligned_cols=118  Identities=29%  Similarity=0.519  Sum_probs=100.7

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec--------------------------cCccceeEEEEEeccCCc
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------CSNEDFRALVLEYTTNGS  438 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~--------------------------~~~~~~~~lv~ey~~~g~  438 (527)
                      ++|++.+.||+|+||.||+|.. +++.||+|++...                          +...+..++||||+++|+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~   84 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGN   84 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCC
Confidence            4688999999999999999874 6778999987421                          112234679999999999


Q ss_pred             HHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          439 LEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       439 L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      |.+++.... ..+++.....++.|++.|++|+|   +.+++||||||+||+++.++.+|++|||+++..
T Consensus        85 L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083          85 LVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceec
Confidence            999997543 35788888999999999999999   999999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.77  E-value=2.3e-18  Score=169.82  Aligned_cols=138  Identities=24%  Similarity=0.370  Sum_probs=100.0

Q ss_pred             CCccccceeccCCceEEEEEEccC----CcEEEEEEEeecc----------------------------Cc---------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHFSC----------------------------SN---------  423 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~~----------------------------~~---------  423 (527)
                      +.|++.+.||+|+||.||+|...+    +..+|+|+.....                            .+         
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            569999999999999999998654    4566777532100                            00         


Q ss_pred             ---c----ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          424 ---E----DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       424 ---~----~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                         .    ...+++||++.. ++.+.+... ...++.....++.|++.|++|+|   +++|+||||||+|||++.++.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~~~~  166 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRI-KCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNNRGY  166 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCcEE
Confidence               0    123567777653 566655432 23466777889999999999999   99999999999999999999999


Q ss_pred             EeecccccccCCCCCc-----cceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~-----~~~~~~~~t~~y~aP  527 (527)
                      ++|||+|+.+......     .......||+.||||
T Consensus       167 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  202 (294)
T PHA02882        167 IIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGL  202 (294)
T ss_pred             EEEcCCceeeccCCcccccccccccccCCCccccCH
Confidence            9999999876422111     111224588999997

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.77  E-value=3.1e-18  Score=170.11  Aligned_cols=139  Identities=32%  Similarity=0.436  Sum_probs=112.5

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc---------------------------------CccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC---------------------------------SNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~---------------------------------~~~~~~~  428 (527)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|+++...                                 ...+..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            467899999999999999999986 468999999875210                                 0113468


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++ +|.+++......+++.+...++.|++.|++|+|   +.+++||||||+||++++++.+|++|||+++....
T Consensus        85 lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~  160 (309)
T cd07845          85 LVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGL  160 (309)
T ss_pred             EEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecCC
Confidence            99999975 898888765566889899999999999999999   99999999999999999999999999999987653


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  .+...++..|+||
T Consensus       161 ~~~~--~~~~~~~~~y~aP  177 (309)
T cd07845         161 PAKP--MTPKVVTLWYRAP  177 (309)
T ss_pred             ccCC--CCcccccccccCh
Confidence            3211  1223356778888

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=9.7e-19  Score=173.33  Aligned_cols=138  Identities=25%  Similarity=0.328  Sum_probs=113.9

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee--------------------------------ccCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF--------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~e  432 (527)
                      ..|++.+.||.||.+.||++...+.+.+|+|++..                                +-..+++.|+|||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            45899999999999999999988888888886421                                1224678899999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |-+ -||.++|.+............|..|+++|+.++|   .++|||.||||.|+|+- +|.+|++|||+|..+......
T Consensus       441 ~Gd-~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  441 CGD-IDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             ccc-ccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH---HhceeecCCCcccEEEE-eeeEEeeeechhcccCccccc
Confidence            865 5999999877655442357779999999999999   99999999999999886 579999999999988765555


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ......+||+-||||
T Consensus       516 I~kdsQvGT~NYMsP  530 (677)
T KOG0596|consen  516 IVKDSQVGTVNYMSP  530 (677)
T ss_pred             eeeccccCcccccCH
Confidence            555567899999998

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.77  E-value=4e-18  Score=164.17  Aligned_cols=139  Identities=33%  Similarity=0.459  Sum_probs=115.4

Q ss_pred             cCCccccceeccCCceEEEEEEccC-CcEEEEEEEeec---------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHFS---------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|+..+.||+|+||.||+|.... ++.||+|.+...                           +..++..+++|||++
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   81 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCG   81 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCC
Confidence            3578999999999999999999764 789999987531                           223456789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +++|.+++...+..+++.....++.+++.|++|+|   +.+|+|||++|+||++++++.++++|||++........  ..
T Consensus        82 ~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~  156 (256)
T cd06612          82 AGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KR  156 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc--cc
Confidence            99999999766667899999999999999999999   89999999999999999999999999999987653321  11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       157 ~~~~~~~~y~~P  168 (256)
T cd06612         157 NTVIGTPFWMAP  168 (256)
T ss_pred             ccccCCccccCH
Confidence            223467788887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.76  E-value=3.1e-18  Score=167.79  Aligned_cols=136  Identities=28%  Similarity=0.413  Sum_probs=106.4

Q ss_pred             ccccceeccCCceEEEEEEc-----cCCcEEEEEEEeecc------------------------------C--ccceeEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFSC------------------------------S--NEDFRAL  429 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~~------------------------------~--~~~~~~l  429 (527)
                      |+..+.||+|+||+||++..     .++..||+|++....                              .  .....++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            47889999999999988652     467889999875311                              1  1224679


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...  .+++.++..++.+++.|++|+|   +++|+||||||+||++++++.++++|||+++.....
T Consensus        86 v~e~~~~~~l~~~~~~~--~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  160 (283)
T cd05080          86 IMEYVPLGSLRDYLPKH--KLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG  160 (283)
T ss_pred             EecCCCCCCHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccccCCc
Confidence            99999999999998653  4789999999999999999999   999999999999999999999999999999876432


Q ss_pred             CCcc-ceeccccccccccC
Q 035895          510 DQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~-~~~~~~~t~~y~aP  527 (527)
                      .... ......++..|+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~P  179 (283)
T cd05080         161 HEYYRVREDGDSPVFWYAV  179 (283)
T ss_pred             chhhccCCCCCCCceeeCH
Confidence            2111 11112345568877

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.76  E-value=3.1e-18  Score=168.98  Aligned_cols=136  Identities=31%  Similarity=0.456  Sum_probs=112.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ..|+..+.||.|+||.||+|.. .+++.||+|.+...                             +..++..++||||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            4589999999999999999985 57899999987431                             22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|..++...  .+++.++..++.+++.|++|||   +.+++||||||+||+++.++.+|++|||+++.......  .
T Consensus        99 ~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~  171 (296)
T cd06655          99 AGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS--K  171 (296)
T ss_pred             CCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhcccccc--c
Confidence            999999988643  5788999999999999999999   99999999999999999999999999999886643321  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       172 ~~~~~~~~~y~aP  184 (296)
T cd06655         172 RSTMVGTPYWMAP  184 (296)
T ss_pred             CCCcCCCccccCc
Confidence            1223467789998

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.76  E-value=3.6e-18  Score=168.28  Aligned_cols=137  Identities=28%  Similarity=0.423  Sum_probs=107.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccc-----e
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNED-----F  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~-----~  426 (527)
                      +.|+..+.||+|+||.||+|... +++.||+|+++..                                +...+     .
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            46889999999999999999864 6899999986421                                00111     2


Q ss_pred             eEEEEEeccCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecc
Q 035895          427 RALVLEYTTNGSLEKVLYSSN----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFG  501 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg  501 (527)
                      .++||||+++ +|.+++....    ..+++.....++.||+.||+|||   +++|+||||||+||+++. ++.+|++|||
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeecc
Confidence            6899999986 8988876432    34788899999999999999999   999999999999999998 8999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+.....  ..+...+++.|+||
T Consensus       157 ~~~~~~~~~~--~~~~~~~~~~~~aP  180 (295)
T cd07837         157 LGRAFSIPVK--SYTHEIVTLWYRAP  180 (295)
T ss_pred             cceecCCCcc--ccCCcccccCCCCh
Confidence            9986543211  11222456778887

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=4.5e-18  Score=164.43  Aligned_cols=138  Identities=33%  Similarity=0.449  Sum_probs=113.0

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ++|+..+.||+|+||.||+|.. .+++.+|+|++...                             ....+..+++|||+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            5788999999999999999986 45788999987531                             12345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++++|.+++......++..+...++.|++.|++|||   +.+|+||||||+||++++++.+|++|||++........  .
T Consensus        83 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~  157 (262)
T cd06613          83 GGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA--K  157 (262)
T ss_pred             CCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhhhhh--c
Confidence            999999998765456788889999999999999999   99999999999999999999999999999987643211  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       158 ~~~~~~~~~y~~P  170 (262)
T cd06613         158 RKSFIGTPYWMAP  170 (262)
T ss_pred             cccccCCccccCc
Confidence            1223467778887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.76  E-value=3.9e-18  Score=164.62  Aligned_cols=135  Identities=35%  Similarity=0.476  Sum_probs=111.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~e  432 (527)
                      +|++.+.||.|+||.||+|+.. +++.||+|++...                                +...+..++|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4888999999999999999875 6899999987421                                123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++++|.+++... ..++..+...++.++++|++|+|   .++++|+||||+||++++++.++++|||++........ 
T Consensus        81 ~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~-  155 (258)
T cd05578          81 LLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL-  155 (258)
T ss_pred             CCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc-
Confidence            99999999998754 46788889999999999999999   89999999999999999999999999999886643321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++..|+||
T Consensus       156 --~~~~~~~~~y~~P  168 (258)
T cd05578         156 --TTSTSGTPGYMAP  168 (258)
T ss_pred             --ccccCCChhhcCH
Confidence              1223466678887

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.76  E-value=4.1e-18  Score=165.13  Aligned_cols=140  Identities=30%  Similarity=0.395  Sum_probs=113.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||.|+||+||+|.. .++..+|+|++...                              +...+..++||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            4689999999999999999985 46789999987421                              1234567899999


Q ss_pred             ccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      +++++|.+++....  ..+++.....++.|++.|++|+|   +.+|+||||||+||++++++.++++|||++..+.....
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~  157 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGD  157 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcc
Confidence            99999999997542  35788888999999999999999   99999999999999999999999999999987654322


Q ss_pred             cc--ceeccccccccccC
Q 035895          512 SM--TQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~--~~~~~~~t~~y~aP  527 (527)
                      ..  ......++..|+||
T Consensus       158 ~~~~~~~~~~~~~~y~~P  175 (267)
T cd06610         158 RTRKVRKTFVGTPCWMAP  175 (267)
T ss_pred             ccccccccccCChhhcCh
Confidence            21  11234577889987

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.76  E-value=3.9e-19  Score=163.78  Aligned_cols=139  Identities=29%  Similarity=0.366  Sum_probs=110.3

Q ss_pred             hcCCcccc-ceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEE
Q 035895          383 ATDGFSAN-NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVL  431 (527)
Q Consensus       383 ~~~~~~~~-~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~  431 (527)
                      .+++|++. ++||-|-.|.|..+.. ++++.+|+|++...                             ........+||
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeee
Confidence            46778764 7899999999998875 57889999986431                             11223345899


Q ss_pred             EeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccC
Q 035895          432 EYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~  507 (527)
                      |.++||+|...+...+ ..+...++-.|+.||+.|+.|||   +.+|.||||||+|+|..   .+..+|++|||+|+.-.
T Consensus       139 E~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             ecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEecccccccccC
Confidence            9999999999998765 35788889999999999999999   99999999999999995   45789999999999753


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....+.|++|.||
T Consensus       216 ~~~---~L~TPc~TPyYvaP  232 (400)
T KOG0604|consen  216 EPG---DLMTPCFTPYYVAP  232 (400)
T ss_pred             CCc---cccCCcccccccCH
Confidence            221   11234678999998

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.76  E-value=6.1e-18  Score=164.14  Aligned_cols=138  Identities=28%  Similarity=0.389  Sum_probs=109.5

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cC--ccceeE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CS--NEDFRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~--~~~~~~  428 (527)
                      +|+..+.||+|+||.||+|.. .++..||+|++...                                  ..  .....+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            688899999999999999986 46889999986410                                  00  124567


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ++|||+++++|.+++...+ .+++.....++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||+++....
T Consensus        83 l~~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~  158 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  158 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCcccccc
Confidence            8999999999999987543 4688888899999999999999   99999999999999999999999999999986532


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... .......++.+|+||
T Consensus       159 ~~~~~~~~~~~~~~~~y~aP  178 (266)
T cd06651         159 ICMSGTGIRSVTGTPYWMSP  178 (266)
T ss_pred             ccccCCccccCCccccccCH
Confidence            1111 111123467789987

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.76  E-value=2.7e-18  Score=169.09  Aligned_cols=134  Identities=28%  Similarity=0.372  Sum_probs=107.9

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~  436 (527)
                      |.....||+|+||.||+|.. .++..||||.+...                             +...+..++||||+++
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            34456799999999999986 46889999987431                             1234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ++|.+++..  ..+++.+...++.+++.|++|+|   +++|+||||||+||++++++.++++|||++........  ...
T Consensus       104 ~~L~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~  176 (292)
T cd06658         104 GALTDIVTH--TRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRK  176 (292)
T ss_pred             CcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCc
Confidence            999998754  34788889999999999999999   89999999999999999999999999999876543221  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       177 ~~~~~~~y~aP  187 (292)
T cd06658         177 SLVGTPYWMAP  187 (292)
T ss_pred             eeecCccccCH
Confidence            23467889998

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.76  E-value=1.1e-18  Score=168.65  Aligned_cols=128  Identities=26%  Similarity=0.393  Sum_probs=100.8

Q ss_pred             ceeccCCceEEEEEEccC--------CcEEEEEEEee-----------------------------ccCccceeEEEEEe
Q 035895          391 NLIGRGSFGSVYKARLQD--------GMEFAIKVFHF-----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~--------~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey  433 (527)
                      +.||+|+||.||+|..+.        ...||+|.+..                             .+...+..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            469999999999997532        23478877532                             12233566799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc--------EEEeecccccc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV--------AHLSDFGIAKL  505 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--------~kl~Dfg~a~~  505 (527)
                      +++|+|.+++...+..+++.....++.|++.|++|+|   +++|+||||||+||+++.++.        ++++|||++..
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            9999999999876666888899999999999999999   999999999999999987665        69999999875


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....      ....++..||||
T Consensus       158 ~~~~------~~~~~~~~y~aP  173 (258)
T cd05078         158 VLPK------EILLERIPWVPP  173 (258)
T ss_pred             cCCc------hhccccCCccCc
Confidence            5321      123456778887

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.76  E-value=2.7e-18  Score=166.33  Aligned_cols=136  Identities=29%  Similarity=0.408  Sum_probs=111.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|+..+.||+|+||.||+|... +++.||+|.+...                              +..+...++||||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            36788899999999999999875 6899999987432                              1233567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++++|.+++......++......++.+++.|++|+|   + .+++||||||+||++++++.++++|||.+........ 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~-  156 (265)
T cd06605          81 MDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA-  156 (265)
T ss_pred             cCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHh-
Confidence            9999999999765456788888899999999999999   8 9999999999999999999999999999876532211 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        . ...++..|+||
T Consensus       157 --~-~~~~~~~y~~P  168 (265)
T cd06605         157 --K-TFVGTSSYMAP  168 (265)
T ss_pred             --h-cccCChhccCH
Confidence              1 14466778887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-19  Score=177.65  Aligned_cols=137  Identities=28%  Similarity=0.395  Sum_probs=112.6

Q ss_pred             cCCccccceeccCCceEEEEEEccCCc-EEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGM-EFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~-~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      ..+++....||-||||.|-+++..... .+|+|+++.                                ...++.++|+.
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmL  498 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYML  498 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhh
Confidence            456677788999999999998865433 477776532                                12345677899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||-|-||++...+++.+ .++......++..+.+|++|||   +++||.|||||+|.++|.+|.+|+.|||+|+.+....
T Consensus       499 mEaClGGElWTiLrdRg-~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  499 MEACLGGELWTILRDRG-SFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             HHhhcCchhhhhhhhcC-CcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence            99999999999998765 4566667778889999999999   9999999999999999999999999999999987554


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .+.   .++||+.|.||
T Consensus       575 KTw---TFcGTpEYVAP  588 (732)
T KOG0614|consen  575 KTW---TFCGTPEYVAP  588 (732)
T ss_pred             cee---eecCCcccccc
Confidence            332   47899999999

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=6.7e-19  Score=169.77  Aligned_cols=140  Identities=30%  Similarity=0.479  Sum_probs=110.0

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------c----------------------Ccccee
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------C----------------------SNEDFR  427 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------~----------------------~~~~~~  427 (527)
                      .|-+...||+|||+.||+|-. ...+-||||+-+..               |                      -+.+..
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsF  543 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSF  543 (775)
T ss_pred             HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccc
Confidence            355678899999999999974 45677899874321               1                      122344


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeeccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAK  504 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~  504 (527)
                      +-|.|||+|.||.-++... ..++..++..|+.||+.||.||... +++|||-||||.|||+-   ..|.+||+|||+++
T Consensus       544 CTVLEYceGNDLDFYLKQh-klmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151|consen  544 CTVLEYCEGNDLDFYLKQH-KLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             eeeeeecCCCchhHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhh
Confidence            6799999999999998654 3567778889999999999999844 89999999999999994   56999999999999


Q ss_pred             ccCCCCCcc-----ceeccccccccccC
Q 035895          505 LLTGEDQSM-----TQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~-----~~~~~~~t~~y~aP  527 (527)
                      +++++....     ......||.||.+|
T Consensus       622 IMdddSy~~vdGmeLTSQgAGTYWYLPP  649 (775)
T KOG1151|consen  622 IMDDDSYNSVDGMELTSQGAGTYWYLPP  649 (775)
T ss_pred             hccCCccCcccceeeecccCceeeecCc
Confidence            987654321     12356799999988

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.76  E-value=4.1e-18  Score=164.34  Aligned_cols=134  Identities=24%  Similarity=0.349  Sum_probs=105.5

Q ss_pred             ceeccCCceEEEEEEccC--C--cEEEEEEEeeccC-----------------------------ccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQD--G--MEFAIKVFHFSCS-----------------------------NEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~--~--~~vavK~~~~~~~-----------------------------~~~~~~lv~ey~~~g  437 (527)
                      +.||+|++|.||+|.+.+  +  ..||||.+.....                             .....++||||+++|
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLG   80 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCC
Confidence            468999999999998643  2  3699998643110                             114567999999999


Q ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc-ce
Q 035895          438 SLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM-TQ  515 (527)
Q Consensus       438 ~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~-~~  515 (527)
                      +|.+.+.... ..+++.....++.|++.||+|+|   +++++||||||+||+++.++.+|++|||+++.+....... ..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  157 (257)
T cd05040          81 SLLDRLRKDALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVME  157 (257)
T ss_pred             cHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccceecc
Confidence            9999997654 46789999999999999999999   9999999999999999999999999999998775432211 11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++.+|+||
T Consensus       158 ~~~~~~~~y~~p  169 (257)
T cd05040         158 EHLKVPFAWCAP  169 (257)
T ss_pred             cCCCCCceecCH
Confidence            123456778887

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.76  E-value=5.3e-18  Score=163.66  Aligned_cols=133  Identities=27%  Similarity=0.378  Sum_probs=103.6

Q ss_pred             ceeccCCceEEEEEEcc----CCcEEEEEEEeec-----------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|...    .+..||+|.+...                             ....+..++||||+++|
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLG   80 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCC
Confidence            47999999999999752    2368999986421                             11123467999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc-ee
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT-QT  516 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~-~~  516 (527)
                      +|.+++...+ .+++..+..++.|++.|++|||   ..+++||||||+||+++.++.+|++|||+++.......... ..
T Consensus        81 ~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~  156 (257)
T cd05060          81 PLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATT  156 (257)
T ss_pred             cHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCccccccc
Confidence            9999997654 5788899999999999999999   89999999999999999999999999999987643322111 11


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       157 ~~~~~~~y~aP  167 (257)
T cd05060         157 AGRWPLKWYAP  167 (257)
T ss_pred             CccccccccCH
Confidence            12234568887

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.76  E-value=5.4e-18  Score=164.93  Aligned_cols=131  Identities=34%  Similarity=0.544  Sum_probs=99.9

Q ss_pred             ceeccCCceEEEEEEcc-CCc--EEEEEEEeec-------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARLQ-DGM--EFAIKVFHFS-------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~-~~~--~vavK~~~~~-------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|+.. ++.  .+|+|.+...                               +...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            46899999999999874 343  4688876421                               1223456799999999


Q ss_pred             CcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          437 GSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       437 g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      |+|.+++....               ..+++.+...++.+++.|++|+|   +++++||||||+||++++++.+|++|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCC
Confidence            99999987532               23678888999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.....   ........+..|+||
T Consensus       158 l~~~~~~~---~~~~~~~~~~~y~ap  180 (270)
T cd05047         158 LSRGQEVY---VKKTMGRLPVRWMAI  180 (270)
T ss_pred             Cccccchh---hhccCCCCccccCCh
Confidence            98643211   111112234568887

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.76  E-value=3.8e-18  Score=168.45  Aligned_cols=134  Identities=28%  Similarity=0.362  Sum_probs=108.7

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~  436 (527)
                      |+....||+|+||.||+|.. .+++.||+|++...                             +..++..++||||+++
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            45556899999999999986 46899999997431                             1234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ++|..++..  ..+++.+...++.|++.|++|+|   +.+|+||||||+||+++.++.+|++|||+++.......  ...
T Consensus       103 ~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~  175 (297)
T cd06659         103 GALTDIVSQ--TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRK  175 (297)
T ss_pred             CCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--ccc
Confidence            999998754  35788889999999999999999   99999999999999999999999999999976543221  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++.+|+||
T Consensus       176 ~~~~~~~y~aP  186 (297)
T cd06659         176 SLVGTPYWMAP  186 (297)
T ss_pred             ceecCccccCH
Confidence            34577889987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.76  E-value=5.2e-18  Score=168.29  Aligned_cols=141  Identities=26%  Similarity=0.405  Sum_probs=111.7

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-------------------------------Cc-------
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-------------------------------SN-------  423 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-------------------------------~~-------  423 (527)
                      ..++|+..+.||+|+||.||+|+.. +++.||||.+....                               ..       
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            4567999999999999999999864 68999999874210                               00       


Q ss_pred             -cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          424 -EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       424 -~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                       ....++||||+++ ++.+.+......+++.+...++.|++.|++|||   +++++||||||+||+++.++.+|++|||+
T Consensus        90 ~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~  165 (310)
T cd07865          90 YKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGL  165 (310)
T ss_pred             CCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCCC
Confidence             1234899999975 888888765556789999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCCc--cceeccccccccccC
Q 035895          503 AKLLTGEDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~--~~~~~~~~t~~y~aP  527 (527)
                      ++........  .......++..|+||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~y~aP  192 (310)
T cd07865         166 ARAFSLSKNSKPNRYTNRVVTLWYRPP  192 (310)
T ss_pred             cccccCCcccCCCCccCcccCccccCc
Confidence            9876432211  111223467789998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=7.8e-18  Score=163.17  Aligned_cols=139  Identities=27%  Similarity=0.381  Sum_probs=110.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------c--Ccccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------C--SNEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~--~~~~~~  427 (527)
                      .+|++.+.||+|+||.||+|.. .++..||+|.+...                                  +  ......
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4688999999999999999986 46899999986421                                  0  012346


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++++|.+++...+ .+++.....++.+++.|++|+|   +.+++||||||+||+++.++.++++|||+++...
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  157 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG-ALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQ  157 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECccccccccc
Confidence            78999999999999987543 4678888899999999999999   9999999999999999999999999999998653


Q ss_pred             CCCC-ccceeccccccccccC
Q 035895          508 GEDQ-SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~-~~~~~~~~~t~~y~aP  527 (527)
                      .... ....+...++..|+||
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aP  178 (264)
T cd06653         158 TICMSGTGIKSVTGTPYWMSP  178 (264)
T ss_pred             cccccCccccccCCcccccCH
Confidence            2111 0111234467889988

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.1e-19  Score=181.38  Aligned_cols=234  Identities=24%  Similarity=0.260  Sum_probs=133.4

Q ss_pred             CCCCCCCEEEcccCCCCcc----cChhHhhccccccEEEcccCcccc------ccchhhcCCcCCcEEEeecCcccccCc
Q 035895           88 SNCKYLKKLDISRNPLDGF----LPRVVGNFSQSLEFIWMSDCNISG------GISEEIGNLTDLISIDLGGNKLNGSIS  157 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~  157 (527)
                      ..++.|++|++++|.++..    ++..+... ++++.|+++++.+.+      .++..+..+++|+.|++++|.+.+..+
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            3444566666666665421    12222222 246666666665541      223445556666777776666654444


Q ss_pred             ccccCCCC---CCEEeccCccccc----ccChhhhcC-cccCeeeeecccCCCC----CCccccCCccCceeeCCCCCCC
Q 035895          158 ITLGKLQK---LQFLSFRGNELEG----SIPNVLCHL-AVLFQLDLRGNKLSGS----IPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       158 ~~~~~l~~---L~~L~l~~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      ..+..+.+   |+.|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    .+..+..+++|++|++++|.++
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            44444444   6777777666652    122334444 6667777777766632    2234555566777777777766


Q ss_pred             C-----CchhhhCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCCCCCCChhhhh-c----CCCCCEEEcc
Q 035895          226 S-----IPSILWNLKDILYLDFWSNLFVGP----LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ-G----LKSLQFLSLG  291 (527)
Q Consensus       226 ~-----lp~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~----l~~L~~L~L~  291 (527)
                      .     ++..+...++|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+.....+. .    .+.|+.|+++
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            3     233344445677777776665422    234455677788888888877653333322 2    3678888888


Q ss_pred             ccccee----ecCCCCCCCCCCCEEeCCCCccccc
Q 035895          292 HNRLQG----SIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       292 ~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                      +|.++.    .+...+..+++|+.+++++|.++..
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            887751    2333455557788888888888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=4.4e-18  Score=166.10  Aligned_cols=135  Identities=27%  Similarity=0.469  Sum_probs=110.2

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~  431 (527)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+...                                 +......++||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            377789999999999999986 57899999986421                                 11234567999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++++|.+++...  .+++.....++.+++.|++|+|   +.+|+||||+|+||++++++.++++|||++........
T Consensus        82 e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06917          82 EYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS  156 (277)
T ss_pred             ecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc
Confidence            999999999998653  5788889999999999999999   99999999999999999999999999999987654321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......++..|+||
T Consensus       157 --~~~~~~~~~~y~aP  170 (277)
T cd06917         157 --KRSTFVGTPYWMAP  170 (277)
T ss_pred             --ccccccCCcceeCH
Confidence              11223467788887

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.76  E-value=5.9e-18  Score=166.25  Aligned_cols=137  Identities=29%  Similarity=0.444  Sum_probs=109.2

Q ss_pred             CccccceeccCCceEEEEEEc----cCCcEEEEEEEeec----------------------------------cCcccee
Q 035895          386 GFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      +|++.+.||+|+||.||+|+.    .+++.||||++...                                  .......
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            477889999999999999974    35788999987521                                  1122456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++... ..+++.....++.|+++|++|+|   +.+++||||||+||+++.++.++++|||+++.+.
T Consensus        81 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          81 HLILDYVNGGELFTHLYQR-EHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEEEecCCCCcHHHHHhhc-CCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            7999999999999998654 35678888889999999999999   8999999999999999999999999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..... ......++..|+||
T Consensus       157 ~~~~~-~~~~~~~~~~y~aP  175 (288)
T cd05583         157 AEEEE-RAYSFCGTIEYMAP  175 (288)
T ss_pred             ccccc-ccccccCCccccCH
Confidence            33211 11223467788887

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.76  E-value=6.1e-18  Score=164.34  Aligned_cols=136  Identities=28%  Similarity=0.453  Sum_probs=109.8

Q ss_pred             CccccceeccCCceEEEEEEccC--CcEEEEEEEee----------------------------------------ccCc
Q 035895          386 GFSANNLIGRGSFGSVYKARLQD--GMEFAIKVFHF----------------------------------------SCSN  423 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~--~~~vavK~~~~----------------------------------------~~~~  423 (527)
                      +|++.+.||+|+||.||+|....  ++.+|+|.+..                                        .+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            58888999999999999999754  68899997631                                        1123


Q ss_pred             cceeEEEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEee
Q 035895          424 EDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                      .+..++||||+++++|.+++..   .+..+++.....++.+++.|++|+|   + .+++||||||+||++++++.+|++|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLH---KEKRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---cCCceeecCCCHHHEEECCCCcEEEec
Confidence            3566899999999999988753   3345788888999999999999999   5 6799999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||.+.......   ......++..|+||
T Consensus       158 fg~~~~~~~~~---~~~~~~~~~~~~~P  182 (269)
T cd08528         158 FGLAKQKQPES---KLTSVVGTILYSCP  182 (269)
T ss_pred             ccceeeccccc---ccccccCcccCcCh
Confidence            99998765332   12234567778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.75  E-value=4.1e-18  Score=166.35  Aligned_cols=135  Identities=32%  Similarity=0.416  Sum_probs=109.4

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee------------------------------ccCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF------------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~  434 (527)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+..                              .+......++||||+
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            467778999999999999985 4678999998642                              122345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++..  ..+++.....++.++++|++|+|   +++++|+||+|+||++++++.++++|||+++.+.....  .
T Consensus        85 ~~~~L~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~  157 (277)
T cd06642          85 GGGSALDLLKP--GPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--K  157 (277)
T ss_pred             CCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcch--h
Confidence            99999998854  35678888899999999999999   89999999999999999999999999999987653221  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       158 ~~~~~~~~~y~aP  170 (277)
T cd06642         158 RNTFVGTPFWMAP  170 (277)
T ss_pred             hhcccCcccccCH
Confidence            1223467778887

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=6.2e-18  Score=163.41  Aligned_cols=127  Identities=33%  Similarity=0.481  Sum_probs=103.7

Q ss_pred             ceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      +.||+|+||.||+|.. .+++.||+|++...                                 +...+..++||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5799999999999986 46889999987421                                 1123466899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++...+ .++......++.|++.||+|+|   +.+++||||+|+||++++++.+|++|||+++.....      .
T Consensus        82 ~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~------~  151 (260)
T cd05611          82 GDCASLIKTLG-GLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN------K  151 (260)
T ss_pred             CCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceecccc------c
Confidence            99999987543 4677888899999999999999   899999999999999999999999999998864321      1


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       152 ~~~~~~~y~~p  162 (260)
T cd05611         152 KFVGTPDYLAP  162 (260)
T ss_pred             cCCCCcCccCh
Confidence            23356678877

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.75  E-value=6.4e-18  Score=167.09  Aligned_cols=141  Identities=30%  Similarity=0.444  Sum_probs=111.5

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-------------------------------Cc------
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-------------------------------SN------  423 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-------------------------------~~------  423 (527)
                      ...++|++.+.||+|+||.||+|... +++.||+|+++...                               ..      
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            35678999999999999999999975 58899999875310                               01      


Q ss_pred             ----cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 035895          424 ----EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       424 ----~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                          .+..++||||+++ ++.+.+......+++.+...++.|++.||+|||   +.+|+||||||+||++++++.+|++|
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~d  159 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLAD  159 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEEeCc
Confidence                1256799999986 777777655456789999999999999999999   99999999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+++........ ......++..|+||
T Consensus       160 fg~~~~~~~~~~~-~~~~~~~~~~y~~P  186 (302)
T cd07864         160 FGLARLYNSEESR-PYTNKVITLWYRPP  186 (302)
T ss_pred             ccccccccCCccc-ccccceeccCccCh
Confidence            9999876533211 11122345678887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2.3e-20  Score=158.54  Aligned_cols=154  Identities=29%  Similarity=0.510  Sum_probs=81.0

Q ss_pred             CCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCcee
Q 035895          138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNL  217 (527)
Q Consensus       138 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  217 (527)
                      ++.+++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..+..+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455556666666665 33445566666666666666665 55666666666666666666665 456666666666666


Q ss_pred             eCCCCCCCC--CchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccc
Q 035895          218 HLDSNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL  295 (527)
Q Consensus       218 ~L~~N~l~~--lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (527)
                      ||.+|++.+  +|..++.++.|+.|.+++|.+. .+|..++.+++|+.|.+..|.+. .+|..++.+..|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            666666654  3433333333333333333221 22333344444444444444443 3444455555555555555555


Q ss_pred             e
Q 035895          296 Q  296 (527)
Q Consensus       296 ~  296 (527)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.75  E-value=5.3e-18  Score=166.39  Aligned_cols=138  Identities=32%  Similarity=0.395  Sum_probs=110.4

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      +.|++.+.||+|+||.||+|... +++.||+|+++..                               +...+..++|||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            35888999999999999999875 5889999976421                               122346789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++++.+..+... ...+++.+...++.+++.|++|||   ..+++|||++|+||++++++.+|++|||+++....... 
T Consensus        81 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~-  155 (288)
T cd07833          81 YVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPA-  155 (288)
T ss_pred             cCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCcc-
Confidence            9998777765543 345788889999999999999999   89999999999999999999999999999987654322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......++.+|+||
T Consensus       156 ~~~~~~~~~~~~~~P  170 (288)
T cd07833         156 SPLTDYVATRWYRAP  170 (288)
T ss_pred             ccccCcccccCCcCC
Confidence            112234567789988

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.75  E-value=6.5e-18  Score=165.45  Aligned_cols=136  Identities=27%  Similarity=0.441  Sum_probs=109.5

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~  434 (527)
                      +|+..+.||+|++|.||+|+.. +|+.||||++...                              +...+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            4888999999999999999974 6889999987431                              12334568999999


Q ss_pred             cCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          435 TNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ++ +|.+++....  ..+++.++..++.|++.|++|+|   +.+++||||||+||++++++.++++|||+++....... 
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~-  155 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN-  155 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc-
Confidence            85 8888876543  45789999999999999999999   89999999999999999999999999999986543211 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......++..|+||
T Consensus       156 -~~~~~~~~~~y~~P  169 (284)
T cd07836         156 -TFSNEVVTLWYRAP  169 (284)
T ss_pred             -ccccccccccccCh
Confidence             11223456778887

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.75  E-value=5.9e-18  Score=169.48  Aligned_cols=136  Identities=18%  Similarity=0.273  Sum_probs=105.2

Q ss_pred             ccceeccC--CceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          389 ANNLIGRG--SFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       389 ~~~~lg~G--~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      +.++||+|  +|++||+++. .+|+.||+|++...                               +..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  7889999986 57899999987531                               22345678999999


Q ss_pred             cCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++... ...+++.....++.|++.||+|||   +++|+||||||+||+++.++.++++|||.+..........
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~  158 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRL  158 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhhccccccccc
Confidence            999999998653 234788889999999999999999   9999999999999999999999999998754432111100


Q ss_pred             -----ceeccccccccccC
Q 035895          514 -----TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 -----~~~~~~~t~~y~aP  527 (527)
                           ......++..||||
T Consensus       159 ~~~~~~~~~~~~~~~y~aP  177 (327)
T cd08227         159 RVVHDFPKYSVKVLPWLSP  177 (327)
T ss_pred             cccccccccccceecccCh
Confidence                 01112356779988

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=6.2e-18  Score=164.80  Aligned_cols=136  Identities=33%  Similarity=0.419  Sum_probs=112.0

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|+..+.||.|+||.||+|+.. +++.||+|++...                              +..+...++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            35888899999999999999864 6889999987421                              1223456799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++++|.+++...  .+++.....++.|++.|++|+|   +++++||||+|+||++++++.++++|||+++.......  
T Consensus        81 ~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--  153 (274)
T cd06609          81 CGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS--  153 (274)
T ss_pred             eCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeeccccc--
Confidence            9999999998654  6788899999999999999999   99999999999999999999999999999987753321  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       154 ~~~~~~~~~~y~~P  167 (274)
T cd06609         154 KRNTFVGTPFWMAP  167 (274)
T ss_pred             ccccccCCccccCh
Confidence            12234567789988

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.75  E-value=3.6e-19  Score=191.63  Aligned_cols=137  Identities=33%  Similarity=0.481  Sum_probs=107.0

Q ss_pred             ccccceeccCCceEEEEEE-ccCCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      ......||.|.||.||-|. ..+|+..|+|-+...                               -.+.+..+|.||||
T Consensus      1237 Wqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC 1316 (1509)
T KOG4645|consen 1237 WQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYC 1316 (1509)
T ss_pred             eccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHh
Confidence            3445789999999999997 577888898865321                               11234556889999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc-
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM-  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~-  513 (527)
                      ++|+|++.+... ...+..-...+..|++.|++|||   +++||||||||+||+++.+|.+|.+|||.|+.+....+.. 
T Consensus      1317 ~~GsLa~ll~~g-ri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~ 1392 (1509)
T KOG4645|consen 1317 EGGSLASLLEHG-RIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMP 1392 (1509)
T ss_pred             ccCcHHHHHHhc-chhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCchhcCC
Confidence            999999998643 33444444557789999999999   9999999999999999999999999999999876543221 


Q ss_pred             -ceeccccccccccC
Q 035895          514 -TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 -~~~~~~~t~~y~aP  527 (527)
                       .-...+||+.||||
T Consensus      1393 ~el~~~~GT~~YMAP 1407 (1509)
T KOG4645|consen 1393 GELQSMMGTPMYMAP 1407 (1509)
T ss_pred             HHHHhhcCCchhcCc
Confidence             11246799999999

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.75  E-value=4.9e-18  Score=166.51  Aligned_cols=136  Identities=27%  Similarity=0.384  Sum_probs=109.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||+|+||+||+|... +++.||+|++...                              +...+..++||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            56888999999999999999864 6889999976421                              2234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++... ..+++.....++.+++.|+.|||+  .++++||||||+||++++++.++++|||+++......   
T Consensus        85 ~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~---  158 (284)
T cd06620          85 MDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI---  158 (284)
T ss_pred             CCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc---
Confidence            9999999988754 357888889999999999999992  2589999999999999999999999999987653221   


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       159 -~~~~~~~~~~~aP  171 (284)
T cd06620         159 -ADTFVGTSTYMSP  171 (284)
T ss_pred             -cCccccCcccCCH
Confidence             1123577788887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-18  Score=152.42  Aligned_cols=137  Identities=30%  Similarity=0.389  Sum_probs=104.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++......||+|++|.|-+-++ .+|+..|+|.+...                               ...+...++.||
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME  125 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICME  125 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHH
Confidence            4444567899999999998886 57999999987531                               123455678899


Q ss_pred             eccCCcHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          433 YTTNGSLEKVLY---SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       433 y~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      -|.- +|..+-.   +.+...+..-.-+||..|..|+.|||.  +..|||||+||+|||++.+|++|+||||++-.+.+.
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            8864 6655433   345556666677899999999999994  678999999999999999999999999999876532


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      -   ..+...|--.||||
T Consensus       203 i---Akt~daGCkpYmaP  217 (282)
T KOG0984|consen  203 I---AKTMDAGCKPYMAP  217 (282)
T ss_pred             h---HHHHhcCCCccCCh
Confidence            1   22223355679998

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.75  E-value=1e-17  Score=162.10  Aligned_cols=136  Identities=32%  Similarity=0.503  Sum_probs=112.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~  434 (527)
                      +|++.+.||+|++|.||+|+.. +++.||+|++...                              +...+..++||||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            6888999999999999999876 5899999986431                              22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++++|.+++... ..++......++.++++|++|+|   + .+++||||+|+||+++.++.++++|||+++.........
T Consensus        82 ~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~  157 (264)
T cd06623          82 DGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC  157 (264)
T ss_pred             CCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc
Confidence            999999999754 45788889999999999999999   8 999999999999999999999999999998765332211


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....++..|+||
T Consensus       158 --~~~~~~~~y~~p  169 (264)
T cd06623         158 --NTFVGTVTYMSP  169 (264)
T ss_pred             --cceeecccccCH
Confidence              123466778887

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.75  E-value=8.8e-18  Score=167.20  Aligned_cols=138  Identities=28%  Similarity=0.462  Sum_probs=107.9

Q ss_pred             CccccceeccCCceEEEEEEcc---CCcEEEEEEEeec--------------------------------cCcc--ceeE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ---DGMEFAIKVFHFS--------------------------------CSNE--DFRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~---~~~~vavK~~~~~--------------------------------~~~~--~~~~  428 (527)
                      +|++.+.||+|+||.||+|...   +++.||+|.+...                                +...  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            4788899999999999999864   4789999987541                                1122  5678


Q ss_pred             EEEEeccCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC----CCcEEEeec
Q 035895          429 LVLEYTTNGSLEKVLYSS----NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD----NIVAHLSDF  500 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~----~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~Df  500 (527)
                      +||||+++ ++.+.+...    ...++......++.|++.|++|||   +.+|+||||||+||+++.    ++.+|++||
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            99999985 676666432    125677788899999999999999   999999999999999999    999999999


Q ss_pred             ccccccCCCCC-ccceeccccccccccC
Q 035895          501 GIAKLLTGEDQ-SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~-~~~~~~~~~t~~y~aP  527 (527)
                      |+++....... ........++.+|+||
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aP  184 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAP  184 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCH
Confidence            99987643322 1122234567889998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.75  E-value=7.5e-18  Score=169.42  Aligned_cols=138  Identities=28%  Similarity=0.371  Sum_probs=109.2

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-----------------------------------Ccccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-----------------------------------SNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-----------------------------------~~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|+. .+|+.||+|++....                                   ......
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46799999999999999999985 578999999874200                                   011236


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++ ++.+++..  ..+++.....++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++...
T Consensus        84 ~lv~e~~~~-~l~~~~~~--~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849          84 YIVQELMET-DLYKLIKT--QHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             EEEehhccc-CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence            899999975 88887753  35788888999999999999999   9999999999999999999999999999998764


Q ss_pred             CCCCcc-ceeccccccccccC
Q 035895          508 GEDQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~-~~~~~~~t~~y~aP  527 (527)
                      ...... ......++..||||
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aP  178 (336)
T cd07849         158 PEHDHTGFLTEYVATRWYRAP  178 (336)
T ss_pred             ccccccCCcCCcCcCCCccCh
Confidence            322111 11234578889998

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.75  E-value=1.2e-17  Score=161.46  Aligned_cols=140  Identities=29%  Similarity=0.433  Sum_probs=112.2

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c--CccceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C--SNEDFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~--~~~~~~~lv~  431 (527)
                      +|++.+.||.|+||.||+|.. .+++.||+|.+...                               +  ......+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            478889999999999999985 56889999987421                               0  1123467999


Q ss_pred             EeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGY--STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||+++++|.+++...   ...+++.+...++.+++.|++|+|..+  +.+++||||||+||++++++.+|++|||+++..
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            999999999998653   356788899999999999999999544  778999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......  .....++..|+||
T Consensus       161 ~~~~~~--~~~~~~~~~~~~p  179 (265)
T cd08217         161 GHDSSF--AKTYVGTPYYMSP  179 (265)
T ss_pred             cCCccc--ccccccCCCccCh
Confidence            533211  1223567788887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.75  E-value=9.6e-18  Score=162.71  Aligned_cols=137  Identities=32%  Similarity=0.465  Sum_probs=108.7

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------------cCcccee
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------------CSNEDFR  427 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------------~~~~~~~  427 (527)
                      |.+.+.||+|+||.||+|.. .+++.||+|.+...                                      +..++..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            66778999999999999986 46789999976421                                      1133456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++++|.+++... ..+++.....++.+++.|++|+|   +.+++||||||+||++++++.++++|||.++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             EEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            7999999999999999754 35678888899999999999999   8999999999999999999999999999998765


Q ss_pred             CCCCcc----ceeccccccccccC
Q 035895          508 GEDQSM----TQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~----~~~~~~~t~~y~aP  527 (527)
                      ......    ......++..|+||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~~p  181 (267)
T cd06628         158 ANSLSTKTNGARPSLQGSVFWMAP  181 (267)
T ss_pred             cccccCCccccccccCCCcCccCh
Confidence            321110    11123466778887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.75  E-value=9.3e-18  Score=163.89  Aligned_cols=135  Identities=30%  Similarity=0.425  Sum_probs=109.9

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEec
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~  434 (527)
                      .|+..+.||+|+||.||+|... ++..||+|++...                              +......++||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            4778899999999999999864 6889999987521                              12335678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++..  ..+++.+...++.+++.|++|+|   +.+++|+||+|+||+++.++.++++|||+++.......  .
T Consensus        85 ~~~~L~~~i~~--~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~  157 (277)
T cd06640          85 GGGSALDLLRA--GPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--K  157 (277)
T ss_pred             CCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc--c
Confidence            99999999864  34678888899999999999999   99999999999999999999999999999987653321  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       158 ~~~~~~~~~y~ap  170 (277)
T cd06640         158 RNTFVGTPFWMAP  170 (277)
T ss_pred             cccccCcccccCH
Confidence            1223467778887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.75  E-value=9.6e-18  Score=164.03  Aligned_cols=133  Identities=27%  Similarity=0.374  Sum_probs=107.5

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCcc--ceeEEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNE--DFRALVLE  432 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~--~~~~lv~e  432 (527)
                      |++.+.||+|+||.||+|.. .+++.||+|+++..                               +...  +..++|||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            56788999999999999985 46889999986421                               1122  56789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++ |++.+.+......+++.+...++.|++.||+|||   +.+|+||||||+||+++. +.+|++|||+++........
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~  155 (282)
T cd07831          81 LMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPY  155 (282)
T ss_pred             cCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEecccccccccCCCc
Confidence            997 5888887765556899999999999999999999   999999999999999999 99999999999876432211


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                         +...++..|+||
T Consensus       156 ---~~~~~~~~y~aP  167 (282)
T cd07831         156 ---TEYISTRWYRAP  167 (282)
T ss_pred             ---CCCCCCcccCCh
Confidence               223467788888

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.75  E-value=8.2e-18  Score=168.97  Aligned_cols=138  Identities=26%  Similarity=0.386  Sum_probs=110.0

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-----------------------------------CccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-----------------------------------SNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-----------------------------------~~~~~~~  428 (527)
                      ++|++.+.||+|+||.||+|.. .+++.||+|++....                                   ......+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            6799999999999999999986 468999999874310                                   0123468


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+. |+|.+++... ..+++.....++.|++.||+|||   +++|+||||||+||++++++.+|++|||+++....
T Consensus        85 lv~e~~~-~~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  159 (334)
T cd07855          85 VVMDLME-SDLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSS  159 (334)
T ss_pred             EEEehhh-hhHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccceeecc
Confidence            9999996 5899888654 34788889999999999999999   89999999999999999999999999999987543


Q ss_pred             CCCc--cceeccccccccccC
Q 035895          509 EDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~--~~~~~~~~t~~y~aP  527 (527)
                      ....  ...+...++.+|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~P  180 (334)
T cd07855         160 SPTEHKYFMTEYVATRWYRAP  180 (334)
T ss_pred             cCcCCCcccccccccccccCh
Confidence            2211  111233577788887

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.75  E-value=6.9e-18  Score=169.72  Aligned_cols=138  Identities=32%  Similarity=0.468  Sum_probs=110.4

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cC--ccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CS--NEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~--~~~~~~  428 (527)
                      .++|++.+.||+|+||.||+|... +++.||+|++...                                +.  .....+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            467899999999999999999865 6889999976320                                11  122468


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++ ++|..++...  .+++..+..++.+++.||+|||   +.+|+||||||+||+++.++.+|++|||+++....
T Consensus        86 lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~  159 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN--ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSE  159 (337)
T ss_pred             EEecccc-cCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccchhcccc
Confidence            9999998 5999888653  6788888899999999999999   99999999999999999999999999999987643


Q ss_pred             CCCc---cceeccccccccccC
Q 035895          509 EDQS---MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~---~~~~~~~~t~~y~aP  527 (527)
                      ....   .......++.+|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~aP  181 (337)
T cd07852         160 LEENPENPVLTDYVATRWYRAP  181 (337)
T ss_pred             ccccccCcchhcccccccccCc
Confidence            3221   112234578889998

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.74  E-value=1.2e-17  Score=161.93  Aligned_cols=138  Identities=29%  Similarity=0.449  Sum_probs=109.6

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRAL  429 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~l  429 (527)
                      +|+..+.||+|+||.||+|.. .+++.||+|++...                                   +...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            477889999999999999985 67899999987531                                   122345679


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~  508 (527)
                      ||||+++++|.+++...+ .+++.....++.|++.|++|+|   +++++||||||+||+++.++ .++++|||.++....
T Consensus        81 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~  156 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG-AFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA  156 (268)
T ss_pred             EEeccCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccccccccccc
Confidence            999999999999987543 5678888899999999999999   99999999999999998765 699999999987653


Q ss_pred             CCCc--cceeccccccccccC
Q 035895          509 EDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~--~~~~~~~~t~~y~aP  527 (527)
                      ....  .......++..|+||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~P  177 (268)
T cd06630         157 KGTGAGEFQGQLLGTIAFMAP  177 (268)
T ss_pred             ccccCCccccccccccceeCH
Confidence            2111  111123467789887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.74  E-value=1.1e-17  Score=163.36  Aligned_cols=134  Identities=32%  Similarity=0.448  Sum_probs=109.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEEecc
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~  435 (527)
                      |+..+.||+|+||.||+|.. .+++.||+|++...                              +..++..++||||++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            77788999999999999985 46889999986421                              123456789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++..  ..+++.....++.+++.|++|+|   +.+++|+||||+||+++.++.++++|||+++.+.....  ..
T Consensus        86 ~~~l~~~i~~--~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~--~~  158 (277)
T cd06641          86 GGSALDLLEP--GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KR  158 (277)
T ss_pred             CCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccchh--hh
Confidence            9999998864  35788888999999999999999   99999999999999999999999999999987643221  11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++.+|+||
T Consensus       159 ~~~~~~~~y~~P  170 (277)
T cd06641         159 NTFVGTPFWMAP  170 (277)
T ss_pred             ccccCCccccCh
Confidence            223467778887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=7.6e-18  Score=163.87  Aligned_cols=141  Identities=31%  Similarity=0.437  Sum_probs=113.3

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------c------Cccc
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------C------SNED  425 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~------~~~~  425 (527)
                      .+.++|++.+.||+|+||.||+|... +++.+|+|++...                             +      ...+
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            35678999999999999999999974 6789999986421                             0      0123


Q ss_pred             eeEEEEEeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      ..++||||+++++|.+++...   +..+++..+..++.|++.|++|+|   +.+++||||+|+||++++++.+|++|||+
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEECCCcc
Confidence            468999999999999988653   346788888999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.......  ......++..|+||
T Consensus       160 ~~~~~~~~~--~~~~~~~~~~y~aP  182 (275)
T cd06608         160 SAQLDSTLG--RRNTFIGTPYWMAP  182 (275)
T ss_pred             ceecccchh--hhcCccccccccCH
Confidence            876543211  11223467788887

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.6e-18  Score=173.26  Aligned_cols=145  Identities=25%  Similarity=0.438  Sum_probs=118.7

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEE
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRAL  429 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~l  429 (527)
                      .++....+.....+||-|.||.||.|.|+ ....||||.++.                            .|..+.-.||
T Consensus       261 kWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYI  340 (1157)
T KOG4278|consen  261 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYI  340 (1157)
T ss_pred             hhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEE
Confidence            44444556777899999999999999985 467899998642                            3777788899


Q ss_pred             EEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |+|||.+|+|-++|+... ..+...-.+++|.||+.|++||.   ++.+|||||-++|+|+.++..+||+|||++|++..
T Consensus       341 iTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtg  417 (1157)
T KOG4278|consen  341 ITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTG  417 (1157)
T ss_pred             EEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcC
Confidence            999999999999998653 34566677889999999999999   99999999999999999999999999999999865


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      +. +....+....+.|.||
T Consensus       418 DT-YTAHAGAKFPIKWTAP  435 (1157)
T KOG4278|consen  418 DT-YTAHAGAKFPIKWTAP  435 (1157)
T ss_pred             Cc-eecccCccCcccccCc
Confidence            43 2222233456778887

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.74  E-value=1.1e-17  Score=164.98  Aligned_cols=138  Identities=28%  Similarity=0.411  Sum_probs=110.3

Q ss_pred             hcCCccccceeccCCceEEEEEEccC-CcEEEEEEEeec-------------------------------cCccceeEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ..++|++.+.||+|+||.||+|...+ ++.||||.+...                               +......++|
T Consensus        13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v   92 (296)
T cd06618          13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFIC   92 (296)
T ss_pred             CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEE
Confidence            34678999999999999999999864 899999997521                               1233456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |||++ +++.++.......+++..+..++.+++.|++|+|   + ++|+||||+|+||++++++.+||+|||++..+...
T Consensus        93 ~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~  168 (296)
T cd06618          93 MELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLK---EKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS  168 (296)
T ss_pred             eeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hhCCEecCCCcHHHEEEcCCCCEEECccccchhccCC
Confidence            99985 4787777654556888888899999999999999   6 58999999999999999999999999999876432


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   .....++..|+||
T Consensus       169 ~~---~~~~~~~~~y~aP  183 (296)
T cd06618         169 KA---KTRSAGCAAYMAP  183 (296)
T ss_pred             Cc---ccCCCCCccccCH
Confidence            21   1223456778887

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.74  E-value=1.1e-17  Score=164.78  Aligned_cols=136  Identities=32%  Similarity=0.451  Sum_probs=111.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||.||+|.. .++..||+|.+...                             +...+..++||||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            5688899999999999999985 46789999986421                             12345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++.+.  .+++.++..++.+++.|++|||   +++++||||||+||+++.++.++|+|||++.........  
T Consensus        99 ~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~--  171 (293)
T cd06647          99 AGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--  171 (293)
T ss_pred             CCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccc--
Confidence            999999998653  4678888999999999999999   999999999999999999999999999998766433221  


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....+++.|+||
T Consensus       172 ~~~~~~~~~y~~P  184 (293)
T cd06647         172 RSTMVGTPYWMAP  184 (293)
T ss_pred             cccccCChhhcCc
Confidence            1223467789888

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.74  E-value=1.5e-17  Score=162.72  Aligned_cols=134  Identities=28%  Similarity=0.424  Sum_probs=109.4

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      |++.+.||+|+||+||+|+.. +++.||||++...                               +..++..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            567889999999999999975 5789999986421                               12245678999999


Q ss_pred             cCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                       +|+|.+++.... ..+++.++..++.|++.+++|||   +++++|+||+|+||++++++.++++|||+++.......  
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~--  154 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP--  154 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCC--
Confidence             789999887654 46789999999999999999999   89999999999999999999999999999987643221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .+...++..|+||
T Consensus       155 -~~~~~~~~~~~aP  167 (283)
T cd07830         155 -YTDYVSTRWYRAP  167 (283)
T ss_pred             -cCCCCCcccccCc
Confidence             1223466778887

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.74  E-value=1.3e-17  Score=161.29  Aligned_cols=131  Identities=35%  Similarity=0.511  Sum_probs=105.4

Q ss_pred             eccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||.||+|+.. +|+.||+|++...                                ...+...++||||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999976 4899999987421                                1234567899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC------cc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ------SM  513 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~------~~  513 (527)
                      .+++.+.+ .+++..+..++.|++.||+|+|   +.+++||||+|+||++++++.++++|||++........      ..
T Consensus        81 ~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  156 (265)
T cd05579          81 ASLLENVG-SLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEK  156 (265)
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccc
Confidence            99997654 5788899999999999999999   99999999999999999999999999999876432211      01


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++..|+||
T Consensus       157 ~~~~~~~~~~~~~P  170 (265)
T cd05579         157 EDKRIVGTPDYIAP  170 (265)
T ss_pred             cccCcccCccccCH
Confidence            12233456778887

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.74  E-value=1.2e-17  Score=162.90  Aligned_cols=120  Identities=39%  Similarity=0.565  Sum_probs=104.2

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~lv  430 (527)
                      ++|.+.+.||+|+||.||+|... +++.||+|++...                                 +...+..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            36888999999999999999864 7899999987421                                 1233567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |||+++++|.+++.+.+ .+++.....++.+++.|++|||   +.+++|+|+||+||+++.++.++++|||++.....
T Consensus        81 ~e~~~~~~L~~~l~~~~-~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581          81 LEYAPNGELLQYIRKYG-SLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             EcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            99999999999997653 5889999999999999999999   99999999999999999999999999999987643

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.74  E-value=1.4e-17  Score=160.50  Aligned_cols=137  Identities=26%  Similarity=0.449  Sum_probs=110.6

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEee-------------------------------ccCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~ey  433 (527)
                      .|+..+.||+|+||.||+++. .+|+.||+|.+..                               .+...+..++||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            478899999999999999986 4688999998642                               12234567899999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++++|.+++.... ..+++.+...++.+++.|++|+|   +.+++|+||+|+||+++.++.++++|||++.........
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~  157 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL  157 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhh
Confidence            99999999887532 35688888999999999999999   899999999999999999999999999999876432211


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....+++.|+||
T Consensus       158 --~~~~~~~~~~~~p  170 (256)
T cd08218         158 --ARTCIGTPYYLSP  170 (256)
T ss_pred             --hhhccCCccccCH
Confidence              1123466778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.74  E-value=1.7e-17  Score=160.57  Aligned_cols=138  Identities=34%  Similarity=0.500  Sum_probs=110.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      .|+..+.||+|+||.||+|.. .+++.||+|+++..                               +...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            377889999999999999986 46889999997531                               1123466899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++++|.+++... ..+++.....++.+++.|++|+|   +.+|+||||+|+||++++++.+|++|||.+..........
T Consensus        81 ~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~  156 (264)
T cd06626          81 CSGGTLEELLEHG-RILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTM  156 (264)
T ss_pred             CCCCcHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcc
Confidence            9999999998754 34678888899999999999999   9999999999999999999999999999998765432211


Q ss_pred             ce--eccccccccccC
Q 035895          514 TQ--TQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~--~~~~~t~~y~aP  527 (527)
                      ..  ....++..|+||
T Consensus       157 ~~~~~~~~~~~~~~~P  172 (264)
T cd06626         157 GEEVQSLAGTPAYMAP  172 (264)
T ss_pred             cccccCCcCCcCccCh
Confidence            11  123456778887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.74  E-value=1.1e-17  Score=163.35  Aligned_cols=129  Identities=30%  Similarity=0.453  Sum_probs=104.1

Q ss_pred             eccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||+||+|.. .+|+.||+|.+...                                +...+..++||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            69999999999985 46889999987421                                1223567899999999999


Q ss_pred             HHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceecc
Q 035895          440 EKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT  518 (527)
Q Consensus       440 ~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  518 (527)
                      .+++...+ ..+++.+...++.|++.|+.|+|   +.+++||||+|+||++++++.++++|||+++.......   ....
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~  154 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK---IKGR  154 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc---cccc
Confidence            99987644 35788888999999999999999   99999999999999999999999999999986643211   1123


Q ss_pred             ccccccccC
Q 035895          519 LAIIGYMAP  527 (527)
Q Consensus       519 ~~t~~y~aP  527 (527)
                      .++..|+||
T Consensus       155 ~~~~~y~~P  163 (277)
T cd05577         155 AGTPGYMAP  163 (277)
T ss_pred             cCCCCcCCH
Confidence            456678887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.74  E-value=1.4e-17  Score=162.13  Aligned_cols=138  Identities=28%  Similarity=0.496  Sum_probs=103.7

Q ss_pred             ccccceeccCCceEEEEEEcc----CCcEEEEEEEeeccC-------------------------------c---c---c
Q 035895          387 FSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCS-------------------------------N---E---D  425 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~~~-------------------------------~---~---~  425 (527)
                      |++.+.||+|+||.||+|.+.    +++.||||++.....                               .   .   .
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            567789999999999999753    468899998743100                               0   0   1


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN-----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      ..++++||+++|+|.+++....     ..+++.....++.+++.|++|+|   +.+|+||||||+||++++++.+|++||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcc
Confidence            2368899999999998875321     24678888999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++...............++..|+||
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~p  184 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLAL  184 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCH
Confidence            999876432211111122334567766

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.74  E-value=6.5e-18  Score=164.10  Aligned_cols=134  Identities=28%  Similarity=0.490  Sum_probs=102.6

Q ss_pred             ceeccCCceEEEEEEccC-------CcEEEEEEEee------------------------------ccCccceeEEEEEe
Q 035895          391 NLIGRGSFGSVYKARLQD-------GMEFAIKVFHF------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~-------~~~vavK~~~~------------------------------~~~~~~~~~lv~ey  433 (527)
                      +.||+|+||.||+|+..+       ++.||+|.+..                              .+...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            468999999999998542       25788887532                              12334567899999


Q ss_pred             ccCCcHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-----cEEEeeccc
Q 035895          434 TTNGSLEKVLYSS------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-----VAHLSDFGI  502 (527)
Q Consensus       434 ~~~g~L~~~l~~~------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-----~~kl~Dfg~  502 (527)
                      +++|+|.+++...      ...+++.+...++.+++.|++|+|   +.+++|+||||+||+++.++     .++++|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            9999999998752      234678889999999999999999   89999999999999999877     899999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++................+..|+||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aP  182 (269)
T cd05044         158 ARDIYKSDYYRKEGEGLLPVRWMAP  182 (269)
T ss_pred             ccccccccccccCcccCCCccccCH
Confidence            9866433221111122345678887

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.74  E-value=1.7e-17  Score=162.55  Aligned_cols=136  Identities=29%  Similarity=0.449  Sum_probs=109.1

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|+..+.||+|+||.||+|+.. +++.||||.+...                               +...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4888999999999999999864 6899999987421                               1234566899999


Q ss_pred             ccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +. ++|.+++... +..+++.+...++.+++.|++|+|   +++++||||+|+||++++++.+|++|||+++........
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~  156 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT  156 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccc
Confidence            96 5898888653 345788889999999999999999   999999999999999999999999999999866432211


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++.+|+||
T Consensus       157 --~~~~~~~~~y~aP  169 (284)
T cd07860         157 --YTHEVVTLWYRAP  169 (284)
T ss_pred             --cccccccccccCC
Confidence              1223356778887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.74  E-value=1.3e-17  Score=168.85  Aligned_cols=135  Identities=27%  Similarity=0.310  Sum_probs=108.1

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cC------cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CS------NE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~------~~  424 (527)
                      ..+.|+..+.||+|+||.||+|+. .+++.||||.+...                               +.      +.
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            357799999999999999999985 47899999986320                               00      11


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+.+ +|.+.+...   ++..+...++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~  166 (353)
T cd07850          94 QDVYLVMELMDA-NLCQVIQMD---LDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  166 (353)
T ss_pred             CcEEEEEeccCC-CHHHHHhhc---CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCccce
Confidence            245899999964 888877532   778888889999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....++..|+||
T Consensus       167 ~~~~~~~---~~~~~~~~~y~aP  186 (353)
T cd07850         167 TAGTSFM---MTPYVVTRYYRAP  186 (353)
T ss_pred             eCCCCCC---CCCCcccccccCH
Confidence            7643211   1223467789988

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=149.69  Aligned_cols=140  Identities=26%  Similarity=0.368  Sum_probs=110.6

Q ss_pred             hcCCccccceeccCCceEEEEEE-ccCCcEEEEEEEee----------------------------ccCccceeEEEEEe
Q 035895          383 ATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey  433 (527)
                      ..+.|.+.+.||.|+||.+|.|. ..+|++||||+=..                            ...++++-.+|||.
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdL   92 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDL   92 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeec
Confidence            45679999999999999999997 67899999998422                            12344566799998


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      . |.+|++++.-....++....+-+|-|+..-++|+|   .++.|||||||+|+|+.   ....+.++|||+|+.+.+..
T Consensus        93 L-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~  168 (341)
T KOG1163|consen   93 L-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR  168 (341)
T ss_pred             c-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccchhhhcccc
Confidence            7 78999998766666788888999999999999999   99999999999999996   34678899999998764322


Q ss_pred             C-----ccceecccccccccc
Q 035895          511 Q-----SMTQTQTLAIIGYMA  526 (527)
Q Consensus       511 ~-----~~~~~~~~~t~~y~a  526 (527)
                      .     +.......||..|.+
T Consensus       169 t~~HIpyre~r~ltGTaRYAS  189 (341)
T KOG1163|consen  169 TRQHIPYREDRNLTGTARYAS  189 (341)
T ss_pred             ccccCccccCCccceeeeehh
Confidence            1     112223457777754

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.74  E-value=2.2e-17  Score=158.15  Aligned_cols=136  Identities=37%  Similarity=0.527  Sum_probs=112.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEecc
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~  435 (527)
                      +|+..+.||+|++|.||+|... +++.||+|++...                             +...+..+++|||++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            4778899999999999999975 6889999987432                             122346679999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +++|.+++......+++.....++.+++.|++|+|   ..+++||||+|+||++++++.++|+|||.+........   .
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~  154 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---R  154 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeecccccccccccc---c
Confidence            99999998765456789899999999999999999   89999999999999999999999999999987654321   1


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       155 ~~~~~~~~~~~P  166 (253)
T cd05122         155 NTMVGTPYWMAP  166 (253)
T ss_pred             cceecCCcccCH
Confidence            223466778887

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.74  E-value=2.3e-17  Score=158.84  Aligned_cols=136  Identities=29%  Similarity=0.487  Sum_probs=109.5

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      .|+..+.||+|+||.||+|.. .+++.+|+|.+...                               ...++..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            478889999999999999986 46889999987421                               1123457899999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~~~~~~~  511 (527)
                      +++++|.+++.... ..+++.....++.+++.|++|+|   +++|+||||||+||+++++ +.+|++|||+++.......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~  157 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK  157 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc
Confidence            99999999997643 44788888999999999999999   9999999999999999854 5689999999987643321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....++..|+||
T Consensus       158 ---~~~~~~~~~y~aP  170 (256)
T cd08220         158 ---AYTVVGTPCYISP  170 (256)
T ss_pred             ---ccccccCCcccCc
Confidence               1123467789988

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.74  E-value=1.9e-17  Score=164.26  Aligned_cols=133  Identities=34%  Similarity=0.423  Sum_probs=107.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      +.|+..+.||+|+||.||+|... +++.||+|++..                                .+..++..++||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            45888899999999999999864 689999998742                                122345667999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||++ |++.+.+......+++..+..++.|++.|+.|+|   +.+|+||||+|+||++++++.++++|||+++...... 
T Consensus        95 e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~-  169 (307)
T cd06607          95 EYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN-  169 (307)
T ss_pred             HhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCCCC-
Confidence            9997 5777776654556889899999999999999999   9999999999999999999999999999987653221 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                           ...++..|+||
T Consensus       170 -----~~~~~~~y~aP  180 (307)
T cd06607         170 -----SFVGTPYWMAP  180 (307)
T ss_pred             -----CccCCccccCc
Confidence                 23456678887

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.73  E-value=1.8e-17  Score=162.42  Aligned_cols=136  Identities=30%  Similarity=0.462  Sum_probs=110.1

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCcc--ceeEEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNE--DFRALVLE  432 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~--~~~~lv~e  432 (527)
                      |++.+.||+|+||.||+|+.. +++.||+|++...                               +...  +..++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            667889999999999999865 5889999997532                               1122  56789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ +|.+++......+++.+...++.+++.|++|||   +.+++|+||||+||++++++.+|++|||+++....... 
T Consensus        81 ~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~-  155 (287)
T cd07840          81 YMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS-  155 (287)
T ss_pred             cccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc-
Confidence            9985 899888765456888899999999999999999   89999999999999999999999999999987653321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ...+...++..|+||
T Consensus       156 ~~~~~~~~~~~y~~P  170 (287)
T cd07840         156 ADYTNRVITLWYRPP  170 (287)
T ss_pred             ccccccccccccCCc
Confidence            112223456778888

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.73  E-value=1.8e-17  Score=162.55  Aligned_cols=140  Identities=33%  Similarity=0.447  Sum_probs=114.4

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------cCccceeEEEEEe
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey  433 (527)
                      ..+.|+..+.||+|+||.||+|..+ ++..||+|++...                            +..++..++||||
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            4567888999999999999999976 6889999987532                            1223567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++++|.+++......+++.++..++.+++.|++|+|   +.+|+|+|++|+||+++.++.++++|||++........  
T Consensus        97 ~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--  171 (286)
T cd06614          97 MDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--  171 (286)
T ss_pred             cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--
Confidence            9999999999875546889999999999999999999   89999999999999999999999999999876543221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......++.+|+||
T Consensus       172 ~~~~~~~~~~y~~P  185 (286)
T cd06614         172 KRNSVVGTPYWMAP  185 (286)
T ss_pred             hhccccCCcccCCH
Confidence            11122356678887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.73  E-value=1.7e-18  Score=175.00  Aligned_cols=138  Identities=32%  Similarity=0.474  Sum_probs=113.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------cCc------------cceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------CSN------------EDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------~~~------------~~~~~lv~ey  433 (527)
                      -++|+...++|.|.||.||||+. ++++..|+|+++..                 |.+            .+..++.|||
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            46799999999999999999995 57899999998642                 222            2344699999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |.||+|.+.-+. ...++..+....+++..+|++|+|   +.+-+|||||-.||++.+.|.+|++|||.+..+..-  -.
T Consensus        94 cgggslQdiy~~-TgplselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqitat--i~  167 (829)
T KOG0576|consen   94 CGGGSLQDIYHV-TGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQITAT--IA  167 (829)
T ss_pred             cCCCcccceeee-cccchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhhhhh--hh
Confidence            999999987643 346778888889999999999999   999999999999999999999999999998876421  12


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......||++||||
T Consensus       168 KrksfiGtpywmap  181 (829)
T KOG0576|consen  168 KRKSFIGTPYWMAP  181 (829)
T ss_pred             hhhcccCCccccch
Confidence            23356799999998

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.73  E-value=3e-17  Score=157.95  Aligned_cols=137  Identities=31%  Similarity=0.532  Sum_probs=112.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|+..+.||+|+||.||+|... ++..||+|++...                               ....+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4778899999999999999864 6889999987531                               1123566799999


Q ss_pred             ccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      +++++|.+++...   +..+++.+...++.+++.|++|+|   +.+++|+||+|+||++++++.++++|||++.......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence            9999999998764   356889999999999999999999   8999999999999999999999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......++..|+||
T Consensus       158 ~--~~~~~~~~~~y~~p  172 (258)
T cd08215         158 D--LAKTVVGTPYYLSP  172 (258)
T ss_pred             c--eecceeeeecccCh
Confidence            1  11223467778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.73  E-value=2.3e-17  Score=162.55  Aligned_cols=137  Identities=31%  Similarity=0.453  Sum_probs=105.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|+..+.||+|++|.||+|... +++.||+|.+...                               +...+..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            57899999999999999999864 6889999986421                               123456789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |++ ++|.+++.... ...++.....++.+|+.||+|||   +++|+||||||+||++++ ++.+|++|||+++......
T Consensus        82 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~  157 (294)
T PLN00009         82 YLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV  157 (294)
T ss_pred             ccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCc
Confidence            996 57887775433 33567777889999999999999   899999999999999985 5679999999998653221


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ..+...+++.|+||
T Consensus       158 ~--~~~~~~~~~~y~~P  172 (294)
T PLN00009        158 R--TFTHEVVTLWYRAP  172 (294)
T ss_pred             c--ccccCceeecccCH
Confidence            1  11223456778887

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.73  E-value=3.3e-17  Score=160.39  Aligned_cols=135  Identities=31%  Similarity=0.442  Sum_probs=108.4

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      |+..+.||+|++|.||+|.. .+|..||+|++...                               +..++..++||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            66788999999999999986 47899999987521                               22345678999999


Q ss_pred             cCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      + ++|.+++.... ..+++..+..++.+++.||+|+|   +++++||||+|+||++++++.++++|||+++........ 
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~-  155 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRT-  155 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccc-
Confidence            5 68999886543 35789999999999999999999   899999999999999999999999999999865422211 


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       156 -~~~~~~~~~~~aP  168 (283)
T cd07835         156 -YTHEVVTLWYRAP  168 (283)
T ss_pred             -cCccccccCCCCC
Confidence             1122356778888

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.73  E-value=2.7e-17  Score=161.43  Aligned_cols=134  Identities=27%  Similarity=0.358  Sum_probs=108.6

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEeccC
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~  436 (527)
                      |+..+.||+|++|.||+|.. .+++.||+|++...                             +...+..++|+||+++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            45567999999999999985 56889999987421                             1234567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      ++|.+++..  ..+++.+...++.+++.|++|+|   +++|+||||||+||+++.++.++++|||+++.......  ...
T Consensus       101 ~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~  173 (285)
T cd06648         101 GALTDIVTH--TRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRK  173 (285)
T ss_pred             CCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccc
Confidence            999999876  35788888999999999999999   99999999999999999999999999999876543211  112


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...++..|+||
T Consensus       174 ~~~~~~~y~aP  184 (285)
T cd06648         174 SLVGTPYWMAP  184 (285)
T ss_pred             cccCCccccCH
Confidence            23467789887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.73  E-value=4.9e-18  Score=154.69  Aligned_cols=136  Identities=29%  Similarity=0.404  Sum_probs=100.1

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc----------------CccceeEEE---------------EEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC----------------SNEDFRALV---------------LEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~----------------~~~~~~~lv---------------~ey  433 (527)
                      +.+....||.|+.|.|++++.+ +|..+|||.++..-                ...+..|||               ||.
T Consensus        93 dl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMel  172 (391)
T KOG0983|consen   93 DLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMEL  172 (391)
T ss_pred             HhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHH
Confidence            3456678999999999999975 58999999986421                112233444               444


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |. .-+++++....+.++..-.-++...+..||.||..  +++|||||+||+|||+|+.|.+|+||||++-.+.+...  
T Consensus       173 Ms-~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA--  247 (391)
T KOG0983|consen  173 MS-TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA--  247 (391)
T ss_pred             HH-HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeecccc--
Confidence            42 23455555555556665566788889999999984  78999999999999999999999999999987654332  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .+...|-+.||||
T Consensus       248 -htrsAGC~~YMaP  260 (391)
T KOG0983|consen  248 -HTRSAGCAAYMAP  260 (391)
T ss_pred             -cccccCCccccCc
Confidence             2334577789998

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.73  E-value=3.2e-17  Score=163.42  Aligned_cols=131  Identities=34%  Similarity=0.427  Sum_probs=107.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey  433 (527)
                      |+..+.||+|+||.||+|+. .++..||+|++...                                +..++..++||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            77789999999999999986 46889999987421                                1233456799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++| ++.+.+......+++.++..++.+++.|+.|+|   +++|+||||+|+||+++.++.++++|||++......    
T Consensus       107 ~~g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~----  178 (317)
T cd06635         107 CLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA----  178 (317)
T ss_pred             CCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCCc----
Confidence            975 787877655566889999999999999999999   999999999999999999999999999998765322    


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....++..|+||
T Consensus       179 --~~~~~~~~y~aP  190 (317)
T cd06635         179 --NSFVGTPYWMAP  190 (317)
T ss_pred             --ccccCCccccCh
Confidence              123466778887

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.73  E-value=6.7e-18  Score=170.33  Aligned_cols=134  Identities=29%  Similarity=0.472  Sum_probs=105.3

Q ss_pred             cccceeccCCceEEEEEEc-cCCcEEE---EEE----------------------------Eee--ccC--ccceeEEEE
Q 035895          388 SANNLIGRGSFGSVYKARL-QDGMEFA---IKV----------------------------FHF--SCS--NEDFRALVL  431 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~-~~~~~va---vK~----------------------------~~~--~~~--~~~~~~lv~  431 (527)
                      +...+||+|+|=+||||-. .+|.+||   ||.                            +++  +..  ......+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            4457899999999999975 3566666   221                            111  111  123456899


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |.++.|+|+.|..+.+ .++......|+.||..||.||| .+.++|||||||..||+++ ..|.|||+|.|+|+..... 
T Consensus       123 EL~TSGtLr~Y~kk~~-~vn~kaik~W~RQILkGL~yLH-s~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s-  199 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHR-RVNIKAIKSWCRQILKGLVYLH-SQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS-  199 (632)
T ss_pred             ecccCCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhhhh-cCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc-
Confidence            9999999999997764 4677788899999999999999 4689999999999999997 5699999999999987432 


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                         .+....||+.||||
T Consensus       200 ---~aksvIGTPEFMAP  213 (632)
T KOG0584|consen  200 ---HAKSVIGTPEFMAP  213 (632)
T ss_pred             ---ccceeccCccccCh
Confidence               12346799999999

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=3.6e-17  Score=157.19  Aligned_cols=136  Identities=32%  Similarity=0.459  Sum_probs=111.2

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|++.+.||+|++|.||+|... +++.||+|.+...                               +..+...++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4778899999999999999864 6789999987421                               1223456799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++++|.+++... ..+++.....++.+++.|++|+|   +.+|+||||||+||+++.++.++++|||+++........ 
T Consensus        81 ~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-  155 (254)
T cd06627          81 AENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD-  155 (254)
T ss_pred             CCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc-
Confidence            9999999998754 45788889999999999999999   999999999999999999999999999999876543221 


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....++..|+||
T Consensus       156 -~~~~~~~~~y~~p  168 (254)
T cd06627         156 -DASVVGTPYWMAP  168 (254)
T ss_pred             -ccccccchhhcCH
Confidence             1223467778887

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=1.8e-19  Score=153.07  Aligned_cols=160  Identities=26%  Similarity=0.439  Sum_probs=85.4

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      ++.|-||+|.++ ..|+.+..+.+|+.|++++|+|. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|||+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            333444444443 23333444444455555555544 23444455555555555555544 4455555555555555555


Q ss_pred             ccCC-CCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          198 NKLS-GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       198 N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      |.+. ...|+.|-.|+.|+.|+|++|.+.-+|+.++++++|+.|.+..|.+. .+|..++.++.|+.|.+.+|+++ .+|
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlp  189 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLP  189 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecC
Confidence            5543 23455555555555555555555555555555555555555555554 35566667777777777777776 555


Q ss_pred             hhhhcC
Q 035895          277 TTIQGL  282 (527)
Q Consensus       277 ~~~~~l  282 (527)
                      +.++.+
T Consensus       190 pel~~l  195 (264)
T KOG0617|consen  190 PELANL  195 (264)
T ss_pred             hhhhhh
Confidence            555543

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=1.9e-17  Score=149.08  Aligned_cols=123  Identities=28%  Similarity=0.387  Sum_probs=103.8

Q ss_pred             cCCccccceeccCCceEEEEEE-ccCCcEEEEEEEeecc----------------------------------CccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC----------------------------------SNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~~----------------------------------~~~~~~~  428 (527)
                      ...|.+.+.+|+|||+.||.++ ..++..+|+|++....                                  ......|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            3568999999999999999998 5788999999874211                                  1234578


Q ss_pred             EEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          429 LVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +++.|...|+|.+.+..   .+..++..+.+.|+.+|++||+++|.. .++..||||||.|||+.+.+.+++.|||-+..
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            99999999999999874   345789999999999999999999932 44599999999999999999999999999876


Q ss_pred             cC
Q 035895          506 LT  507 (527)
Q Consensus       506 ~~  507 (527)
                      ..
T Consensus       179 a~  180 (302)
T KOG2345|consen  179 AP  180 (302)
T ss_pred             cc
Confidence            43

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.72  E-value=4e-17  Score=162.00  Aligned_cols=140  Identities=26%  Similarity=0.406  Sum_probs=110.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc---------------------------------------Cc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC---------------------------------------SN  423 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~---------------------------------------~~  423 (527)
                      .++|++.+.||+|+||.||+|... +++.||+|++....                                       ..
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999864 68899999874210                                       01


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ....++||||+++ ++...+......+++.+...++.|+++||+|+|   +.+|+||||||+||++++++.++++|||++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  162 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLA  162 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcCccc
Confidence            1235899999975 777777655556889999999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCcc---------ceeccccccccccC
Q 035895          504 KLLTGEDQSM---------TQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~---------~~~~~~~t~~y~aP  527 (527)
                      +.........         ..+...++..|+||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (311)
T cd07866         163 RPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPP  195 (311)
T ss_pred             hhccCCCcccccCCcccccccccceeccCcCCh
Confidence            8654322111         11223457779988

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.72  E-value=3.3e-17  Score=158.50  Aligned_cols=128  Identities=32%  Similarity=0.468  Sum_probs=104.5

Q ss_pred             eccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||.||+|+.. +++.||+|++...                                +..+...++||||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999975 5889999987431                                1223456799999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++.+.. .++......++.+++.|++|+|   +++++|+||||+||+++.++.++++|||+++......   ......
T Consensus        81 ~~~l~~~~-~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~  153 (262)
T cd05572          81 WTILRDRG-LFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFC  153 (262)
T ss_pred             HHHHhhcC-CCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---cccccc
Confidence            99997643 4678888889999999999999   9999999999999999999999999999998765332   112234


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ++..|+||
T Consensus       154 ~~~~~~~P  161 (262)
T cd05572         154 GTPEYVAP  161 (262)
T ss_pred             CCcCccCh
Confidence            67778887

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.72  E-value=3.7e-17  Score=164.91  Aligned_cols=140  Identities=25%  Similarity=0.370  Sum_probs=111.0

Q ss_pred             HHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------C--
Q 035895          377 YQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------S--  422 (527)
Q Consensus       377 ~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~--  422 (527)
                      ..++....+.|+..+.||+|+||.||+|.. .+++.||+|++....                               .  
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~   88 (345)
T cd07877           9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA   88 (345)
T ss_pred             HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeec
Confidence            345566778999999999999999999985 578999999874210                               0  


Q ss_pred             ----ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          423 ----NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       423 ----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                          .....++++|++ +++|.+++...  .+++..+..++.|+++|++|+|   +.+|+||||||+||++++++.+|++
T Consensus        89 ~~~~~~~~~~lv~~~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~  162 (345)
T cd07877          89 RSLEEFNDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKIL  162 (345)
T ss_pred             ccccccccEEEEehhc-ccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEe
Confidence                012246777776 78998887543  4788889999999999999999   9999999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.....     .....++..|+||
T Consensus       163 dfg~~~~~~~~-----~~~~~~~~~y~aP  186 (345)
T cd07877         163 DFGLARHTDDE-----MTGYVATRWYRAP  186 (345)
T ss_pred             ccccccccccc-----ccccccCCCccCH
Confidence            99998865322     1223467788887

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.72  E-value=4e-17  Score=164.56  Aligned_cols=135  Identities=26%  Similarity=0.372  Sum_probs=108.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCcc-----
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNE-----  424 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~-----  424 (527)
                      ...+.|++.+.||+|+||.||+|.. .++..||||++...                               +...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence            3456799999999999999999985 57899999987321                               0000     


Q ss_pred             -ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          425 -DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       425 -~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                       ...++||||+ +++|.+++..  ..+++..+..++.|++.|++|+|   +.+|+||||||+||+++.++.++++|||++
T Consensus        92 ~~~~~lv~e~~-~~~l~~~~~~--~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~  165 (343)
T cd07880          92 FHDFYLVMPFM-GTDLGKLMKH--EKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  165 (343)
T ss_pred             cceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccc
Confidence             1347999999 7799988754  35788889999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +......     ....++..|+||
T Consensus       166 ~~~~~~~-----~~~~~~~~y~aP  184 (343)
T cd07880         166 RQTDSEM-----TGYVVTRWYRAP  184 (343)
T ss_pred             cccccCc-----cccccCCcccCH
Confidence            8654221     123456778887

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.4e-17  Score=151.61  Aligned_cols=118  Identities=25%  Similarity=0.428  Sum_probs=98.9

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~~~~lv~e  432 (527)
                      .+.|.+.+.+|+|.||.+-+++++ +.+.+++|.++.                              .....++.+++||
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            356999999999999999999975 567899998642                              1234567889999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--CCCcEEEeeccccccc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--DNIVAHLSDFGIAKLL  506 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~Dfg~a~~~  506 (527)
                      |+|.|||+.-+...  .+......+++.|++.|++|+|   +.++||||||.+|||+-  +..++|+||||..+..
T Consensus       103 ~aP~gdL~snv~~~--GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAA--GIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             cCccchhhhhcCcc--cccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCccEEEeeeccccccc
Confidence            99999999887543  3566677889999999999999   99999999999999993  4568999999998754

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.72  E-value=3.8e-17  Score=155.75  Aligned_cols=123  Identities=24%  Similarity=0.185  Sum_probs=100.3

Q ss_pred             CCceEEEEEEc-cCCcEEEEEEEeec------------------------cCccceeEEEEEeccCCcHHHHHHhcCCCC
Q 035895          396 GSFGSVYKARL-QDGMEFAIKVFHFS------------------------CSNEDFRALVLEYTTNGSLEKVLYSSNYIL  450 (527)
Q Consensus       396 G~~g~vy~~~~-~~~~~vavK~~~~~------------------------~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~  450 (527)
                      |.||.||+|+. .+++.||+|++...                        +...+..++||||+++|+|.+++.... .+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~l   82 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL-NI   82 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc-CC
Confidence            88999999986 56899999997531                        123456789999999999999986543 47


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          451 DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       451 ~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.....++.|++.|++|+|   +++|+||||||+||+++.++.++++|||.++......     ....++..||||
T Consensus        83 ~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~~~~y~aP  151 (237)
T cd05576          83 PEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-----DGEAVENMYCAP  151 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc-----ccCCcCccccCC
Confidence            88889999999999999999   9999999999999999999999999999887654221     112345568887

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.72  E-value=4.5e-17  Score=156.65  Aligned_cols=138  Identities=34%  Similarity=0.452  Sum_probs=112.5

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCcc--ceeEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNE--DFRALVL  431 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~--~~~~lv~  431 (527)
                      +|+..+.||+|++|.||+|... +++.|++|++...                               +...  +..++||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3777899999999999999875 6899999986431                               1123  5678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++++|.+++.... .+++.++..++.+++.|++|+|   +.+++|+|++|+||+++.++.++++|||.+........
T Consensus        81 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  156 (260)
T cd06606          81 EYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIET  156 (260)
T ss_pred             EecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecccccc
Confidence            9999999999987654 6788999999999999999999   89999999999999999999999999999987754322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ........++..|+||
T Consensus       157 ~~~~~~~~~~~~y~~p  172 (260)
T cd06606         157 GEGTGSVRGTPYWMAP  172 (260)
T ss_pred             cccccCCCCCccccCH
Confidence            1112234466778887

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.72  E-value=2.7e-17  Score=161.91  Aligned_cols=131  Identities=28%  Similarity=0.352  Sum_probs=105.9

Q ss_pred             cceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEeccCCcH
Q 035895          390 NNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      ...||+|+||.||+|.. .+++.||||++..                             .+...+..++||||+++++|
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            46899999999999986 5789999998642                             11234567899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++..  ..+++.....++.+++.|++|+|   +.+++||||||+||++++++.++++|||++........  ......
T Consensus       105 ~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~  177 (292)
T cd06657         105 TDIVTH--TRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLV  177 (292)
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccc
Confidence            998754  34688888899999999999999   89999999999999999999999999999876543221  112234


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ++.+|+||
T Consensus       178 ~~~~y~~p  185 (292)
T cd06657         178 GTPYWMAP  185 (292)
T ss_pred             cCccccCH
Confidence            67788887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.72  E-value=4.5e-17  Score=156.90  Aligned_cols=137  Identities=28%  Similarity=0.458  Sum_probs=109.7

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|+..+.||+|+||.||+|... +|..||+|.+...                               +...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4778899999999999999864 5889999987421                               2234466899999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~~  511 (527)
                      +++++|.+++.... ..+++.....++.++++|++|+|   +.+++|+||||+||++++++ .+|++|||.+........
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~  157 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSME  157 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcc
Confidence            99999999987543 35788899999999999999999   89999999999999999775 569999999987643321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .  .....+++.|+||
T Consensus       158 ~--~~~~~~~~~~~ap  171 (257)
T cd08225         158 L--AYTCVGTPYYLSP  171 (257)
T ss_pred             c--ccccCCCccccCH
Confidence            1  1123467778887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.72  E-value=5.9e-17  Score=159.11  Aligned_cols=136  Identities=32%  Similarity=0.407  Sum_probs=108.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------c--CccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------C--SNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~--~~~~~~~lv~  431 (527)
                      ++|+..+.||.|++|.||+|.. .+++.||+|.+...                              +  ......++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            4688899999999999999997 46889999986421                              1  1123568999


Q ss_pred             EeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|.+++..   ....++......++.+++.|++|+|   +.+++||||+|+||++++++.++++|||++.....
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  157 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN  157 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeeccccccccc
Confidence            99999999988653   2345677888899999999999999   99999999999999999999999999999876532


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...    ....++..|+||
T Consensus       158 ~~~----~~~~~~~~y~~p  172 (287)
T cd06621         158 SLA----GTFTGTSFYMAP  172 (287)
T ss_pred             ccc----ccccCCccccCH
Confidence            211    123356678887

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.72  E-value=1.2e-17  Score=176.49  Aligned_cols=139  Identities=21%  Similarity=0.239  Sum_probs=100.6

Q ss_pred             cCCccccceeccCCceEEEEEEccC--CcEEEEE------------------EE--------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD--GMEFAIK------------------VF--------------------------  417 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~--~~~vavK------------------~~--------------------------  417 (527)
                      .++|++.+.||+|+||+||+|..+.  +..++.|                  .+                          
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4679999999999999999986432  1111111                  11                          


Q ss_pred             --eeccCccceeEEEEEeccCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC
Q 035895          418 --HFSCSNEDFRALVLEYTTNGSLEKVLYSSN----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD  491 (527)
Q Consensus       418 --~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~  491 (527)
                        ...+..++..++|||++. +++..++....    ......+...|+.|++.||+|||   +++||||||||+|||++.
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl~~  302 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFLNC  302 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECC
Confidence              011233456789999986 57777765322    11234456679999999999999   999999999999999999


Q ss_pred             CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+||+|||+++.+...... ......||..|+||
T Consensus       303 ~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aP  337 (501)
T PHA03210        303 DGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSP  337 (501)
T ss_pred             CCCEEEEeCCCceecCccccc-ccccccCCcCCCCc
Confidence            999999999999877543221 12235688999998

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.71  E-value=5.9e-17  Score=155.92  Aligned_cols=135  Identities=30%  Similarity=0.490  Sum_probs=109.9

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +|++.+.||+|+||.||+|.. .+++.+|+|.+...                               .......++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            478889999999999999975 47889999987431                               1223567899999


Q ss_pred             ccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      +++++|.+++...   +..+++.....++.+++.|++|+|   +.+++||||+|+||++++++.+|++|||+++......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~  157 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM  157 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccCC
Confidence            9999999988652   245788888999999999999999   9999999999999999999999999999998765431


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                          .....++..|+||
T Consensus       158 ----~~~~~~~~~~~~P  170 (256)
T cd08530         158 ----AKTQIGTPHYMAP  170 (256)
T ss_pred             ----cccccCCccccCH
Confidence                1123356678776

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.5e-18  Score=173.03  Aligned_cols=249  Identities=23%  Similarity=0.229  Sum_probs=185.9

Q ss_pred             EEEcccCCCC-cccChhHhhccccccEEEcccCccccc----cchhhcCCcCCcEEEeecCcccc------cCcccccCC
Q 035895           95 KLDISRNPLD-GFLPRVVGNFSQSLEFIWMSDCNISGG----ISEEIGNLTDLISIDLGGNKLNG------SISITLGKL  163 (527)
Q Consensus        95 ~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l  163 (527)
                      .|+|..+.++ ...+..+..+. .|+.|++++|.++..    ++..+...+++++|+++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4677777776 33344455554 699999999998542    45667778889999999998862      234567778


Q ss_pred             CCCCEEeccCcccccccChhhhcCcc---cCeeeeecccCCC----CCCccccCC-ccCceeeCCCCCCCC-----Cchh
Q 035895          164 QKLQFLSFRGNELEGSIPNVLCHLAV---LFQLDLRGNKLSG----SIPTCFGNL-TALRNLHLDSNELTS-----IPSI  230 (527)
Q Consensus       164 ~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~-----lp~~  230 (527)
                      ++|+.|++++|.+.+..+..+..+..   |+.|++++|+++.    .+...+..+ ++|+.|++++|.++.     ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            99999999999998767777777766   9999999999873    233445666 899999999999983     3445


Q ss_pred             hhCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCCCCCCC----hhhhhcCCCCCEEEcccccceeecCCC
Q 035895          231 LWNLKDILYLDFWSNLFVGP----LPSKIGNLKVLTRIDFSRNNLLGDI----PTTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       231 ~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      +..+..|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+..    +..+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            66778899999999988742    3344566679999999999987543    345677889999999999987532222


Q ss_pred             CC-----CCCCCCEEeCCCCccccc----CccchhhhccCCeeEeeeeeee
Q 035895          303 FD-----DLVSLESLDLSNNNLSEI----IPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       303 ~~-----~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +.     ..+.|+.|++++|.++..    +...+..++.|+.++++.+.+.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            21     347899999999999732    3344556677888888776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.71  E-value=5.3e-17  Score=163.33  Aligned_cols=137  Identities=27%  Similarity=0.383  Sum_probs=109.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------Ccc-----ce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------SNE-----DF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~~~-----~~  426 (527)
                      ...|++.+.||+|+||+||+|+. .+++.||||.+....                               ...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            35689999999999999999985 568999999874210                               000     23


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+. ++|.+++... ..++......++.|++.|++|||   +++++||||||+||+++.++.+|++|||+++..
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  158 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTT  158 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCcccccc
Confidence            689999996 6898888654 45788889999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......  .....++..|+||
T Consensus       159 ~~~~~~--~~~~~~~~~y~aP  177 (337)
T cd07858         159 SEKGDF--MTEYVVTRWYRAP  177 (337)
T ss_pred             CCCccc--ccccccccCccCh
Confidence            432211  1223467789888

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.71  E-value=6.5e-17  Score=158.14  Aligned_cols=135  Identities=30%  Similarity=0.411  Sum_probs=109.3

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      |+..+.||+|++|.||+|... +++.+|+|.+...                               +..++..++||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            567789999999999999864 6889999986421                               12335668999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++ ++.+++......+++.++..++.+++.|++|||   +.+|+|+||||+||++++++.++++|||.+........  .
T Consensus        81 ~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~--~  154 (283)
T cd05118          81 DT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR--P  154 (283)
T ss_pred             CC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc--c
Confidence            85 898888765567889999999999999999999   99999999999999999999999999999987654321  1


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       155 ~~~~~~~~~~~~P  167 (283)
T cd05118         155 YTHYVVTRWYRAP  167 (283)
T ss_pred             ccCccCcccccCc
Confidence            1223456678887

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.71  E-value=5.3e-17  Score=162.98  Aligned_cols=137  Identities=26%  Similarity=0.339  Sum_probs=107.1

Q ss_pred             CccccceeccCCceEEEEEEcc-C--CcEEEEEEEeecc------------------------------------Cccce
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-D--GMEFAIKVFHFSC------------------------------------SNEDF  426 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~--~~~vavK~~~~~~------------------------------------~~~~~  426 (527)
                      +|++.+.||+|+||.||+|+.. +  +..||+|++....                                    .....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4788899999999999999864 4  7889999864210                                    00123


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .+++|||+. ++|.+.+... ..+++.....++.|++.||+|+|   +.+|+||||||+||++++++.+||+|||+++..
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSG-QPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            568888886 6898888643 45788888999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCc--cceeccccccccccC
Q 035895          507 TGEDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~--~~~~~~~~t~~y~aP  527 (527)
                      ......  .......++..|+||
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aP  178 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAP  178 (332)
T ss_pred             ccccccccccccCcccCccccCc
Confidence            432211  111234578889998

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.71  E-value=6.2e-17  Score=158.65  Aligned_cols=134  Identities=30%  Similarity=0.442  Sum_probs=107.1

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCccce-----
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDF-----  426 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~-----  426 (527)
                      |++.+.||+|+||.||+|+.+ +++.||+|++...                                  +...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            667899999999999999976 4899999987521                                  011122     


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      .+++|||+.+ +|.+++.... ..+++.++..++.+++.||+|||   +.+++|+|++|+||++++++.+|++|||+++.
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCccee
Confidence            6799999975 8988886543 35789999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   ....++..|+||
T Consensus       157 ~~~~~~~---~~~~~~~~~~~P  175 (287)
T cd07838         157 YSFEMAL---TSVVVTLWYRAP  175 (287)
T ss_pred             ccCCccc---ccccccccccCh
Confidence            6433211   123456778887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=2.5e-17  Score=153.13  Aligned_cols=133  Identities=26%  Similarity=0.411  Sum_probs=105.0

Q ss_pred             ceeccCCceEEEEEE-ccCCcEEEEEEEee------------------------------ccCccceeEEEEEeccCCcH
Q 035895          391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHF------------------------------SCSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~-~~~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey~~~g~L  439 (527)
                      +.||+|+|+.|--+. +.+|.++|||++..                              ...+++..|+|||-|.||.|
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl  163 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL  163 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence            789999999998876 68899999999743                              12345677899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccccccCCCC-Ccc--
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN---IVAHLSDFGIAKLLTGED-QSM--  513 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~Dfg~a~~~~~~~-~~~--  513 (527)
                      -.+|++.. .+...++-++..+||.||.+||   .++|.|||+||+|||-.+.   .-+||+||.++.-+.-.. -+.  
T Consensus       164 LshI~~~~-~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spas  239 (463)
T KOG0607|consen  164 LSHIQKRK-HFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPAS  239 (463)
T ss_pred             HHHHHHhh-hccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCC
Confidence            99998654 4677788889999999999999   9999999999999998643   458999998876442111 111  


Q ss_pred             --ceeccccccccccC
Q 035895          514 --TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 --~~~~~~~t~~y~aP  527 (527)
                        .-...+|+..||||
T Consensus       240 tP~L~tPvGSAEfMAP  255 (463)
T KOG0607|consen  240 TPELLTPVGSAEFMAP  255 (463)
T ss_pred             CccccCcccchhhcch
Confidence              11234577789998

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.71  E-value=6.1e-17  Score=158.25  Aligned_cols=135  Identities=33%  Similarity=0.445  Sum_probs=109.1

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEEec
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~  434 (527)
                      |+..+.||+|+||.||+|+.. +++.||+|++...                               +...+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            566789999999999999875 5899999987542                               11234678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      + ++|.+++......+++..+..++.+++.|++|||   +.+|+||||+|+||++++++.++++|||+++........  
T Consensus        81 ~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~--  154 (282)
T cd07829          81 D-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT--  154 (282)
T ss_pred             C-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccc--
Confidence            8 5899999765456889999999999999999999   899999999999999999999999999999876433211  


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....++..|+||
T Consensus       155 ~~~~~~~~~~~aP  167 (282)
T cd07829         155 YTHEVVTLWYRAP  167 (282)
T ss_pred             cCccccCcCcCCh
Confidence            1122345678887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-18  Score=156.98  Aligned_cols=134  Identities=33%  Similarity=0.392  Sum_probs=100.3

Q ss_pred             cccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEecc
Q 035895          388 SANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~~  435 (527)
                      +....||.|+||+|+|-.+ +.|+..|||+++..                               +-.|+..++-||.|.
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            3457899999999999876 57999999998642                               234567789999996


Q ss_pred             CCcHHHHH---Hh-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          436 NGSLEKVL---YS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       436 ~g~L~~~l---~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      - ++..+.   +. .+..++..-.-.|...+..||.||-.  ...|||||+||+|||+|..|.+|+||||++-.+.+   
T Consensus       147 ~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~---  220 (361)
T KOG1006|consen  147 I-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVD---  220 (361)
T ss_pred             h-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHH---
Confidence            3 565432   21 12334444445577778899999974  57899999999999999999999999999976642   


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      +...|.-+|-..||||
T Consensus       221 SiAkT~daGCrpYmAP  236 (361)
T KOG1006|consen  221 SIAKTVDAGCRPYMAP  236 (361)
T ss_pred             HHHhhhccCCccccCh
Confidence            2334445577789998

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.71  E-value=8.2e-19  Score=159.51  Aligned_cols=135  Identities=26%  Similarity=0.435  Sum_probs=103.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------c--Ccc-----------------ceeEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------C--SNE-----------------DFRAL  429 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------~--~~~-----------------~~~~l  429 (527)
                      .+..+.||-|+||+||-+.. ++|+.||+|++...                 |  .++                 ++.|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            45568999999999999986 57999999986321                 1  111                 13356


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ++|.+.. ||.+++-..+ .++.....-+..||.+||.|||   +.+|.||||||.|.|++.+...||||||+||.....
T Consensus       135 ~TELmQS-DLHKIIVSPQ-~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d  209 (449)
T KOG0664|consen  135 LTELMQS-DLHKIIVSPQ-ALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSNCILKICDFGLARTWDQR  209 (449)
T ss_pred             HHHHHHh-hhhheeccCC-CCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccCceEEecccccccccchh
Confidence            7777764 7877765433 4555555667899999999999   999999999999999999999999999999976533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      + ....|..+.|.+|.||
T Consensus       210 ~-~~hMTqEVVTQYYRAP  226 (449)
T KOG0664|consen  210 D-RLNMTHEVVTQYYRAP  226 (449)
T ss_pred             h-hhhhHHHHHHHHhccH
Confidence            2 3334556678899998

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.70  E-value=4.1e-17  Score=162.47  Aligned_cols=136  Identities=24%  Similarity=0.319  Sum_probs=112.3

Q ss_pred             cCCccccceeccCCceEEEEEEccC-CcEEEEEEEee----------------------------------------ccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHF----------------------------------------SCS  422 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~----------------------------------------~~~  422 (527)
                      ..+|...+.+|+|+||.|+.|.++. ..+|+||.+..                                        ...
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            3468899999999999999998754 67899998632                                        124


Q ss_pred             ccceeEEEEEec-cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          423 NEDFRALVLEYT-TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       423 ~~~~~~lv~ey~-~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      ++++.|++||-- +|-||.++|.. +..++..++..|+.||+.|+++||   +.+|||||||-+|+.++.+|-+|+.|||
T Consensus       640 ddd~yyl~te~hg~gIDLFd~IE~-kp~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~klidfg  715 (772)
T KOG1152|consen  640 DDDYYYLETEVHGEGIDLFDFIEF-KPRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLIDFG  715 (772)
T ss_pred             cCCeeEEEecCCCCCcchhhhhhc-cCccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEeecc
Confidence            567888999976 45699999864 456788888899999999999999   9999999999999999999999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      -|......    .-...+||.+|.||
T Consensus       716 saa~~ksg----pfd~f~gtv~~aap  737 (772)
T KOG1152|consen  716 SAAYTKSG----PFDVFVGTVDYAAP  737 (772)
T ss_pred             chhhhcCC----Ccceeeeeccccch
Confidence            99876432    12346799999998

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.70  E-value=1.5e-16  Score=158.28  Aligned_cols=131  Identities=33%  Similarity=0.414  Sum_probs=106.2

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey  433 (527)
                      |...+.||+|+||.||+|+. .+++.||+|++...                                +...+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            56667899999999999986 46889999987421                                1233457899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +. |++.+.+......+++.++..++.+++.|++|||   +.+|+||||||+||++++++.+|++|||++......    
T Consensus       103 ~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~----  174 (313)
T cd06633         103 CL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA----  174 (313)
T ss_pred             CC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCCC----
Confidence            96 5788877665566889999999999999999999   899999999999999999999999999998653211    


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....++..|+||
T Consensus       175 --~~~~~~~~y~aP  186 (313)
T cd06633         175 --NSFVGTPYWMAP  186 (313)
T ss_pred             --CCccccccccCh
Confidence              123467778887

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.70  E-value=8.3e-17  Score=161.36  Aligned_cols=137  Identities=28%  Similarity=0.366  Sum_probs=109.4

Q ss_pred             CccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-------------------------------Ccc-----ceeE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-------------------------------SNE-----DFRA  428 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-------------------------------~~~-----~~~~  428 (527)
                      .|++.+.||+|+||.||+|+.. +++.||||++....                               ...     ...+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3788899999999999999865 58999999864311                               111     2568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++ ++|.+++.... .+++.....++.+++.|++|||   +++|+||||||+||+++.++.++++|||++.....
T Consensus        81 lv~e~~~-~~l~~~l~~~~-~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~  155 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ-PLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDP  155 (330)
T ss_pred             EEecchh-hhHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceEeecc
Confidence            9999998 48988886543 6788889999999999999999   99999999999999999999999999999987654


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... .......++..|+||
T Consensus       156 ~~~~~~~~~~~~~~~~y~aP  175 (330)
T cd07834         156 DEDEKGFLTEYVVTRWYRAP  175 (330)
T ss_pred             cccccccccccccccCcCCc
Confidence            3210 112234467789988

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.70  E-value=5.4e-17  Score=159.37  Aligned_cols=137  Identities=32%  Similarity=0.398  Sum_probs=103.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|+..+.||+|+||.||++.. .+++.||+|.+...                               +..+...+++||
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            3566778999999999999986 46899999987421                               112345578999


Q ss_pred             eccCCcHHHH---HHh-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKV---LYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~---l~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |+.. ++.++   +.. ....+++.....++.+++.|++|+|+  ..+|+||||||+||+++.++.+|++|||+++....
T Consensus        84 ~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          84 LMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             cccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence            9875 54443   322 23457888899999999999999992  35899999999999999999999999999986543


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....++..|+||
T Consensus       161 ~~~---~~~~~~~~~y~aP  176 (288)
T cd06616         161 SIA---KTRDAGCRPYMAP  176 (288)
T ss_pred             CCc---cccccCccCccCH
Confidence            211   1223467778887

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.70  E-value=9.6e-17  Score=160.74  Aligned_cols=137  Identities=28%  Similarity=0.383  Sum_probs=108.2

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-------------------------------c-cCccce
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-------------------------------S-CSNEDF  426 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-------------------------------~-~~~~~~  426 (527)
                      +....++|+..+.||+|+||.||+|+. .+++.||+|++..                               . ......
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            344678899999999999999999985 4789999997531                               0 112345


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+ +++|.+++..  ..++......++.|++.|++|||   +.+|+||||||+||++++++.++++|||.++..
T Consensus        85 ~~lv~e~~-~~~L~~~~~~--~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~  158 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTS--RPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             EEEEeehh-ccCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCcccccccc
Confidence            67999998 5689888753  34577777889999999999999   999999999999999999999999999998865


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....     ....++..|+||
T Consensus       159 ~~~~-----~~~~~~~~y~aP  174 (328)
T cd07856         159 DPQM-----TGYVSTRYYRAP  174 (328)
T ss_pred             CCCc-----CCCcccccccCc
Confidence            3221     122356678887

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.70  E-value=1.1e-16  Score=158.88  Aligned_cols=132  Identities=34%  Similarity=0.446  Sum_probs=106.7

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||.||+|+. .+++.||+|.+...                                +..+...++|||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            377778999999999999986 46789999987421                                112345679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+. |++.+.+......+++.++..++.+++.|++|+|   +.+++||||||+||+++.++.++++|||++......   
T Consensus        96 ~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~---  168 (308)
T cd06634          96 YCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---  168 (308)
T ss_pred             ccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecCc---
Confidence            997 5888877655556788888999999999999999   999999999999999999999999999998765422   


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                         ....++..|+||
T Consensus       169 ---~~~~~~~~y~aP  180 (308)
T cd06634         169 ---NXFVGTPYWMAP  180 (308)
T ss_pred             ---ccccCCccccCH
Confidence               123456678887

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.69  E-value=1.6e-16  Score=160.23  Aligned_cols=132  Identities=28%  Similarity=0.397  Sum_probs=104.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------Cc------cc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------SN------ED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~~------~~  425 (527)
                      .+.|...+.||+|+||.||+|+. .+|+.||+|++....                               ..      ..
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36899999999999999999985 578999999874210                               00      01


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+.. ++..+..   ..+++.....++.|++.|++|+|   +.+|+||||||+||+++.++.+|++|||+++.
T Consensus        94 ~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~  166 (342)
T cd07879          94 DFYLVMPYMQT-DLQKIMG---HPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARH  166 (342)
T ss_pred             eEEEEeccccc-CHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCCCcC
Confidence            34799999974 7776642   34678888899999999999999   99999999999999999999999999999986


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....     ....++..|+||
T Consensus       167 ~~~~~-----~~~~~~~~y~aP  183 (342)
T cd07879         167 ADAEM-----TGYVVTRWYRAP  183 (342)
T ss_pred             CCCCC-----CCceeeecccCh
Confidence            53221     123457778888

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.69  E-value=2.1e-17  Score=170.34  Aligned_cols=137  Identities=26%  Similarity=0.408  Sum_probs=112.0

Q ss_pred             ccccceeccCCceEEEEEEc-cCC----cEEEEEEEeeccCc-----------------------------cceeEEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDG----MEFAIKVFHFSCSN-----------------------------EDFRALVLE  432 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~----~~vavK~~~~~~~~-----------------------------~~~~~lv~e  432 (527)
                      ....++||+|+||+||+|.+ +.|    .+||||++...-..                             .....||++
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq  777 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQ  777 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHH
Confidence            34568999999999999975 333    47899997542111                             122458999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |++.|.|.++++.++..+.....+.|..|||+|+.|||   .+++|||||-++|||+.+-..+||+|||+|+.+..+...
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~e  854 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKE  854 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCccccc
Confidence            99999999999987777888888999999999999999   999999999999999999999999999999998766554


Q ss_pred             cceecccccccccc
Q 035895          513 MTQTQTLAIIGYMA  526 (527)
Q Consensus       513 ~~~~~~~~t~~y~a  526 (527)
                      .........+.|||
T Consensus       855 y~~~~gK~pikwma  868 (1177)
T KOG1025|consen  855 YSAPGGKVPIKWMA  868 (1177)
T ss_pred             ccccccccCcHHHH
Confidence            44445555677876

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.69  E-value=1.4e-16  Score=160.72  Aligned_cols=134  Identities=27%  Similarity=0.358  Sum_probs=108.5

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccc-----
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNED-----  425 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~-----  425 (527)
                      ..++|+..+.||+|+||.||+|+.. +++.||||++...                               ....+     
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            3567999999999999999999874 6789999986421                               00111     


Q ss_pred             -eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          426 -FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       426 -~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                       ..++|+||+ +++|.+++..  ..+++.++..++.+++.|++|+|   +.+|+||||||+||++++++.++++|||+++
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~  166 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC--QKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLAR  166 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEccccccc
Confidence             278999998 5699998864  35788889999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......     ....++..|+||
T Consensus       167 ~~~~~~-----~~~~~~~~y~aP  184 (343)
T cd07851         167 HTDDEM-----TGYVATRWYRAP  184 (343)
T ss_pred             cccccc-----cCCcccccccCH
Confidence            764321     123456778887

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.69  E-value=3.3e-16  Score=150.25  Aligned_cols=129  Identities=37%  Similarity=0.501  Sum_probs=105.0

Q ss_pred             eccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEEEeccCCcH
Q 035895          393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       393 lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      ||+|+||.||+|... +++.||+|++...                                +..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999865 5889999987431                                1234567899999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL  519 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  519 (527)
                      .+++.... .+++.....++.++++|+.|+|   +.+++|+||||+||+++.++.++++|||.+........  ......
T Consensus        81 ~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~  154 (250)
T cd05123          81 FSHLSKEG-RFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNTFC  154 (250)
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccCCc
Confidence            99987543 5788888999999999999999   89999999999999999999999999999987643211  112234


Q ss_pred             cccccccC
Q 035895          520 AIIGYMAP  527 (527)
Q Consensus       520 ~t~~y~aP  527 (527)
                      ++..|+||
T Consensus       155 ~~~~~~~P  162 (250)
T cd05123         155 GTPEYLAP  162 (250)
T ss_pred             CCccccCh
Confidence            56778887

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>smart00090 RIO RIO-like kinase

Probab=99.68  E-value=1.5e-16  Score=150.54  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             CccccceeccCCceEEEEEE--ccCCcEEEEEEEeeccC-----------------------------------------
Q 035895          386 GFSANNLIGRGSFGSVYKAR--LQDGMEFAIKVFHFSCS-----------------------------------------  422 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~--~~~~~~vavK~~~~~~~-----------------------------------------  422 (527)
                      .|++.+.||+|+||.||+|.  ..+|+.||||+++....                                         
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            58889999999999999998  57899999998763210                                         


Q ss_pred             ----------ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-eEecCCCCCCeeeCC
Q 035895          423 ----------NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP-IIHCDLKPHNKLLDD  491 (527)
Q Consensus       423 ----------~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~nill~~  491 (527)
                                .....++||||++|+++....... ...+..+...++.+++.+++|+|   ..+ |+|||+||+||+++ 
T Consensus       109 ~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~-  183 (237)
T smart00090      109 EAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKD-VEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILVH-  183 (237)
T ss_pred             hcCCCCCeeeEecCceEEEEEecCCccccccccc-CCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE-
Confidence                      011246999999998887654222 23455556789999999999999   999 99999999999999 


Q ss_pred             CCcEEEeecccccccCC
Q 035895          492 NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~  508 (527)
                      ++.++++|||.|+....
T Consensus       184 ~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      184 DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             CCCEEEEEChhhhccCC
Confidence            88999999999986543

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.67  E-value=3.1e-16  Score=156.02  Aligned_cols=135  Identities=19%  Similarity=0.181  Sum_probs=100.5

Q ss_pred             ccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCccceeEEEEEeccCC
Q 035895          389 ANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.+.+|.|+++.||++.. +++.||||++...                               +..++..+++|||+++|
T Consensus         6 i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            344555556665665555 6899999997531                               11335678999999999


Q ss_pred             cHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc----
Q 035895          438 SLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS----  512 (527)
Q Consensus       438 ~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~----  512 (527)
                      +|.+++... ...++......++.|++.||+|||   +++|+||||||+||+++.++.+|++|||.+.........    
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~  161 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVV  161 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeecccccccccc
Confidence            999998753 335778888889999999999999   999999999999999999999999999998755322110    


Q ss_pred             -cceeccccccccccC
Q 035895          513 -MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 -~~~~~~~~t~~y~aP  527 (527)
                       .......++..|+||
T Consensus       162 ~~~~~~~~~~~~y~aP  177 (314)
T cd08216         162 HDFPKSSVKNLPWLSP  177 (314)
T ss_pred             ccccccccccccccCH
Confidence             011123356678887

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.67  E-value=3.6e-16  Score=157.14  Aligned_cols=117  Identities=27%  Similarity=0.411  Sum_probs=97.1

Q ss_pred             Ccc-ccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------------------
Q 035895          386 GFS-ANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------------------  420 (527)
Q Consensus       386 ~~~-~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------------------  420 (527)
                      .|. +.+.||+|+||+||+|+. .+++.||||++...                                           
T Consensus         9 ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   88 (335)
T PTZ00024          9 RYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDV   88 (335)
T ss_pred             chhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEE
Confidence            354 457899999999999985 46899999986421                                           


Q ss_pred             cCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       421 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      +..++..++||||++ |+|.+++... ..++......++.|++.|++|||   +.+|+||||||+||+++.++.++++||
T Consensus        89 ~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl~df  163 (335)
T PTZ00024         89 YVEGDFINLVMDIMA-SDLKKVVDRK-IRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADF  163 (335)
T ss_pred             EecCCcEEEEEeccc-cCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEECCc
Confidence            112345679999997 5899888643 35788888999999999999999   999999999999999999999999999


Q ss_pred             ccccccC
Q 035895          501 GIAKLLT  507 (527)
Q Consensus       501 g~a~~~~  507 (527)
                      |.++...
T Consensus       164 g~~~~~~  170 (335)
T PTZ00024        164 GLARRYG  170 (335)
T ss_pred             cceeecc
Confidence            9998654

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.67  E-value=4.4e-16  Score=150.44  Aligned_cols=135  Identities=28%  Similarity=0.425  Sum_probs=103.3

Q ss_pred             ccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------------ccCccceeEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------------~~~~~~~~~lv~  431 (527)
                      |.+.+.||+|+||.||+|+.. .+..+++|+++.                                  .+..++..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            778899999999999999864 344555555431                                  112234567999


Q ss_pred             EeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++++|.+++..   .+..+++.+...++.+++.|++|+|   +.+++|+|+||+||++++ +.++++|||+++....
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~  157 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMG  157 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceeecCC
Confidence            99999999998864   2345788899999999999999999   999999999999999975 5699999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  .....++..|+||
T Consensus       158 ~~~~--~~~~~~~~~~~~p  174 (260)
T cd08222         158 SCDL--ATTFTGTPYYMSP  174 (260)
T ss_pred             Cccc--ccCCCCCcCccCH
Confidence            2211  1123356678877

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.67  E-value=3.8e-16  Score=157.43  Aligned_cols=137  Identities=25%  Similarity=0.358  Sum_probs=105.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-----------------------------C------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-----------------------------S------------  422 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-----------------------------~------------  422 (527)
                      ..|+..+.||+|+||.||+|.. .+++.||+|++....                             .            
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5689999999999999999986 568999999864210                             0            


Q ss_pred             --ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEee
Q 035895          423 --NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSD  499 (527)
Q Consensus       423 --~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~D  499 (527)
                        .....++||||++ ++|.+++..  ..+++.....++.|++.|++|||   +.+|+||||||+||+++ +++.+|++|
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~~kl~d  158 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLVLKIGD  158 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEEECC
Confidence              0124579999997 589888753  34778888999999999999999   99999999999999998 566899999


Q ss_pred             cccccccCCCCCcc-ceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~-~~~~~~~t~~y~aP  527 (527)
                      ||.++......... ......++..|+||
T Consensus       159 fg~~~~~~~~~~~~~~~~~~~~~~~y~aP  187 (342)
T cd07854         159 FGLARIVDPHYSHKGYLSEGLVTKWYRSP  187 (342)
T ss_pred             cccceecCCccccccccccccccccccCH
Confidence            99998654321111 11123467788887

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.66  E-value=3.2e-16  Score=156.96  Aligned_cols=112  Identities=22%  Similarity=0.301  Sum_probs=93.1

Q ss_pred             ceeccC--CceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEEeccC
Q 035895          391 NLIGRG--SFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       391 ~~lg~G--~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ..||+|  +||+||+|+. .+|+.||+|++...                               +..++..++||||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            456666  9999999986 47899999987421                               1233456799999999


Q ss_pred             CcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          437 GSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       437 g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      |++.+++.... ..+++.....++.|++.||+|+|   +.+|+||||||+||+++.++.++++|||.+..
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~  150 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSHLYS  150 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHHHhh
Confidence            99999887542 34778888899999999999999   99999999999999999999999999986543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.66  E-value=6e-16  Score=143.15  Aligned_cols=113  Identities=25%  Similarity=0.226  Sum_probs=92.6

Q ss_pred             CccccceeccCCceEEEEEEccCCcEEEEEEEeecc-----------------------------------------C--
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-----------------------------------------S--  422 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-----------------------------------------~--  422 (527)
                      -|...+.||+|+||.||+|..++|+.||||++....                                         .  
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            378889999999999999998889999999754210                                         0  


Q ss_pred             ------ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          423 ------NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       423 ------~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                            .....++||||++|++|......       .....++.+++.++.++|   ..+|+||||||+||+++++++++
T Consensus        96 ~v~~~~~~~~~~lv~e~~~g~~L~~~~~~-------~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~~~~  165 (198)
T cd05144          96 PVPKPIDWNRHAVVMEYIDGVELYRVRVL-------EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDEKIY  165 (198)
T ss_pred             CCCceeecCCceEEEEEeCCcchhhcccc-------ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCCcEE
Confidence                  01234789999999999765421       234568889999999999   89999999999999999999999


Q ss_pred             EeecccccccCC
Q 035895          497 LSDFGIAKLLTG  508 (527)
Q Consensus       497 l~Dfg~a~~~~~  508 (527)
                      ++|||.+.....
T Consensus       166 liDfg~~~~~~~  177 (198)
T cd05144         166 IIDWPQMVSTDH  177 (198)
T ss_pred             EEECCccccCCC
Confidence            999999976643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.66  E-value=4.9e-16  Score=145.50  Aligned_cols=139  Identities=24%  Similarity=0.373  Sum_probs=109.1

Q ss_pred             cCCccccceeccCCceEEEEEE-ccCCcEEEEEEEee------------------ccC----------ccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHF------------------SCS----------NEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~------------------~~~----------~~~~~~lv~ey~  434 (527)
                      --.|++.++||+|+||+.+.|. +-+++.||||.=..                  .|.          ..-+-.+|||.+
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL  106 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL  106 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh
Confidence            3469999999999999999997 56789999996311                  011          111224899977


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-----CcEEEeecccccccCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-----IVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-----~~~kl~Dfg~a~~~~~~  509 (527)
                       |.+|++++.-.+..++......+|.|+..-++|+|   ++..|.|||||+|+||...     ..+.+.|||+|+.+.+.
T Consensus       107 -GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp  182 (449)
T KOG1165|consen  107 -GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDP  182 (449)
T ss_pred             -CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCc
Confidence             78999999877888999999999999999999999   9999999999999999643     46889999999987543


Q ss_pred             CC--c---cceecccccccccc
Q 035895          510 DQ--S---MTQTQTLAIIGYMA  526 (527)
Q Consensus       510 ~~--~---~~~~~~~~t~~y~a  526 (527)
                      ..  .   .......||..||+
T Consensus       183 ~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  183 KTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             cccccCccccccccccceeeeE
Confidence            32  1   12224558889986

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.65  E-value=3.9e-16  Score=167.64  Aligned_cols=140  Identities=28%  Similarity=0.463  Sum_probs=111.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc--------CCcEEEEEEEee-------------------------------ccCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHF-------------------------------SCSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~-------------------------------~~~~~  424 (527)
                      .++.++.+.+|+|.||.|++|...        ....||||++..                               .|...
T Consensus       295 ~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~  374 (609)
T KOG0200|consen  295 RENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQD  374 (609)
T ss_pred             hhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccC
Confidence            344456679999999999999732        146799998642                               34456


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      +..++|+||+..|+|.++++..+               ..+...+.+.++.|||.|++||+   +.++||||+-++|||+
T Consensus       375 ~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi  451 (609)
T KOG0200|consen  375 GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLI  451 (609)
T ss_pred             CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEe
Confidence            67789999999999999998765               23778889999999999999999   9999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccc--cccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTL--AIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~--~t~~y~aP  527 (527)
                      .++..+||+|||+||.......+.. ....  -.+.||||
T Consensus       452 ~~~~~~kIaDFGlar~~~~~~~y~~-~~~~~~LP~kWmAp  490 (609)
T KOG0200|consen  452 TKNKVIKIADFGLARDHYNKDYYRT-KSSAGTLPVKWMAP  490 (609)
T ss_pred             cCCCEEEEccccceeccCCCCceEe-cCCCCccceeecCH
Confidence            9999999999999997654433221 1122  24459998

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-16  Score=165.30  Aligned_cols=136  Identities=33%  Similarity=0.592  Sum_probs=104.2

Q ss_pred             ccccceeccCCceE-EEEEEccCCcEEEEEEE-------------------------eeccC--ccceeEEEEEeccCCc
Q 035895          387 FSANNLIGRGSFGS-VYKARLQDGMEFAIKVF-------------------------HFSCS--NEDFRALVLEYTTNGS  438 (527)
Q Consensus       387 ~~~~~~lg~G~~g~-vy~~~~~~~~~vavK~~-------------------------~~~~~--~~~~~~lv~ey~~~g~  438 (527)
                      |...+++|.|+-|+ ||+|..+ |++||||.+                         +.+|.  ++++.||+.|.|.. +
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-s  588 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-S  588 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-h
Confidence            44567899998885 5899885 679999974                         23443  45678999999986 9


Q ss_pred             HHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---C--CcEEEeecccccccCCCC
Q 035895          439 LEKVLYSSNYIL---DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---N--IVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       439 L~~~l~~~~~~~---~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~--~~~kl~Dfg~a~~~~~~~  510 (527)
                      |.+++.......   .......+..|++.||++||   +.+||||||||+|||++.   +  .+++|+|||+++.+....
T Consensus       589 L~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~  665 (903)
T KOG1027|consen  589 LQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK  665 (903)
T ss_pred             HHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccccCCCc
Confidence            999997631111   11345667899999999999   999999999999999964   2  578999999999887655


Q ss_pred             Cccce-eccccccccccC
Q 035895          511 QSMTQ-TQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~-~~~~~t~~y~aP  527 (527)
                      .+... ....||-||+||
T Consensus       666 sS~~r~s~~sGt~GW~AP  683 (903)
T KOG1027|consen  666 SSFSRLSGGSGTSGWQAP  683 (903)
T ss_pred             chhhcccCCCCcccccCH
Confidence            44333 345689999999

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.65  E-value=7.7e-17  Score=163.62  Aligned_cols=138  Identities=25%  Similarity=0.407  Sum_probs=109.0

Q ss_pred             ccccceeccCCceEEEEEEcc--CC--cEEEEEEEeeccC------------------cc-----------ceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARLQ--DG--MEFAIKVFHFSCS------------------NE-----------DFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~--~~--~~vavK~~~~~~~------------------~~-----------~~~~lv~ey  433 (527)
                      ....+.||+|.||+|++|.|.  .|  ..||||.++....                  ++           .-..+|||.
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~EL  191 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFEL  191 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhh
Confidence            455689999999999999874  33  5689999864211                  11           122479999


Q ss_pred             ccCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ++.|+|-+.|++ .+..+-......++.|||.|++||.   ++++|||||-.+|+++...-.+||+|||+.|.+...+..
T Consensus       192 aplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199|consen  192 APLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             cccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcc
Confidence            999999999987 3445666667789999999999999   999999999999999999999999999999998766554


Q ss_pred             ccee-ccccccccccC
Q 035895          513 MTQT-QTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~-~~~~t~~y~aP  527 (527)
                      ...+ .....+.|.||
T Consensus       269 Yvm~p~rkvPfAWCaP  284 (1039)
T KOG0199|consen  269 YVMAPQRKVPFAWCAP  284 (1039)
T ss_pred             eEecCCCcCcccccCH
Confidence            4333 33346678887

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.62  E-value=2.1e-16  Score=140.56  Aligned_cols=121  Identities=24%  Similarity=0.440  Sum_probs=98.5

Q ss_pred             hcCCccccceeccCCceEEEEEE-ccCCcEEEEEEEeec---------------c--------------CccceeEEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFS---------------C--------------SNEDFRALVLE  432 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~---------------~--------------~~~~~~~lv~e  432 (527)
                      ..++|++.+.+|+|.|++||.|. ..+.+.++||+++..               +              .....+.+|+|
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE  115 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFE  115 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhh
Confidence            45789999999999999999997 456788999987531               0              12235678999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |+.+.|...+..    .+...+...++.+++.||.|+|   ++||+|||+||+|+++|. .-..++.|.|+|.+.....
T Consensus       116 ~v~n~Dfk~ly~----tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~  187 (338)
T KOG0668|consen  116 YVNNTDFKQLYP----TLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK  187 (338)
T ss_pred             hhccccHHHHhh----hhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchHhhcCCCc
Confidence            999988877653    2445566778999999999999   999999999999999995 5679999999999886544

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.62  E-value=8.7e-16  Score=155.79  Aligned_cols=134  Identities=26%  Similarity=0.350  Sum_probs=106.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .++|+....+|+|+|+.|-++.. .+++..|+|++...                          +.+....++|||++.|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g  400 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDG  400 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecCCceeeeeehhccc
Confidence            57788888999999999988875 56888999987543                          1223356799999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee-CCCCcEEEeecccccccCCCCCccce
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL-DDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |-+-+.+...... . .++..|+.+++.|+.|||   +++|||||+||+|||+ ++.+.++++|||.++.....    ..
T Consensus       401 ~ell~ri~~~~~~-~-~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----~~  471 (612)
T KOG0603|consen  401 GELLRRIRSKPEF-C-SEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----CD  471 (612)
T ss_pred             cHHHHHHHhcchh-H-HHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhhCchh----hc
Confidence            9888777654322 2 567779999999999999   9999999999999999 58999999999999987543    11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                       .-+-|..|.||
T Consensus       472 -tp~~t~~y~AP  482 (612)
T KOG0603|consen  472 -TPALTLQYVAP  482 (612)
T ss_pred             -ccchhhcccCh
Confidence             12356778887

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.60  E-value=8.5e-15  Score=137.71  Aligned_cols=137  Identities=32%  Similarity=0.450  Sum_probs=109.0

Q ss_pred             ccccceeccCCceEEEEEEccC-CcEEEEEEEeecc------------------------------CccceeEEEEEecc
Q 035895          387 FSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHFSC------------------------------SNEDFRALVLEYTT  435 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~~~------------------------------~~~~~~~lv~ey~~  435 (527)
                      |+..+.||+|++|.||+|.... ++.+|+|.+....                              ...+..++++||++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            5667899999999999999765 8899999986421                              12245679999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +++|.+++......+++.....++.+++.++.|+|   +.+++|+|++|+||+++.++.++++|||.+......... ..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~-~~  156 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAA-LL  156 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccc-cc
Confidence            99999998765433788888999999999999999   889999999999999999999999999999877543200 11


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|++|
T Consensus       157 ~~~~~~~~~~~p  168 (225)
T smart00221      157 KTVKGTPFYLAP  168 (225)
T ss_pred             cceeccCCcCCH
Confidence            123355667776

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.59  E-value=4.9e-15  Score=135.76  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeeccC-------------------------------c---------------
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCS-------------------------------N---------------  423 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~~-------------------------------~---------------  423 (527)
                      .+.||+|+||.||+|+..+++.||||+++....                               .               
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999988899999998753110                               0               


Q ss_pred             -----cceeEEEEEeccCCcHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEE
Q 035895          424 -----EDFRALVLEYTTNGSLEK-VLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       424 -----~~~~~lv~ey~~~g~L~~-~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~k  496 (527)
                           ....++||||++++++.. .+....  .. .+...++.+++.++.++|   . ++|+|||+||+||+++ ++.++
T Consensus        82 ~~~~~~~~~~lv~e~~~g~~~~~~~l~~~~--~~-~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~p~Nili~-~~~~~  154 (187)
T cd05119          82 PKPIDLNRHVLVMEFIGGDGIPAPRLKDVR--LL-EDPEELYDQILELMRKLY---REAGLVHGDLSEYNILVD-DGKVY  154 (187)
T ss_pred             CceEecCCCEEEEEEeCCCCccChhhhhhh--hc-ccHHHHHHHHHHHHHHHh---hccCcCcCCCChhhEEEE-CCcEE
Confidence                 013368999999954321 111110  11 456778999999999999   7 9999999999999999 89999


Q ss_pred             EeecccccccCC
Q 035895          497 LSDFGIAKLLTG  508 (527)
Q Consensus       497 l~Dfg~a~~~~~  508 (527)
                      ++|||.++....
T Consensus       155 liDfg~a~~~~~  166 (187)
T cd05119         155 IIDVPQAVEIDH  166 (187)
T ss_pred             EEECcccccccC
Confidence            999999986643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.59  E-value=3.6e-17  Score=162.82  Aligned_cols=214  Identities=29%  Similarity=0.392  Sum_probs=159.4

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      +|.|++-+++..+...    .-..+.--...||+.|++.. +|..+..+. .|+.+.|.+|.+. .+|..+.++..|+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a----~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l  126 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGA----ASYDLTDTVFADLSRNRFSE-LPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFL  126 (722)
T ss_pred             ccccccchhhcCCCcc----ccccccchhhhhcccccccc-CchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHh
Confidence            5778888877654432    11345556788999999985 566666554 6888888888887 678888888888999


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      ||+.|+++ ..|..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++.
T Consensus       127 ~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  127 DLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             hhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence            99988887 4566666665 888888888887 67777888888888888888887 46666888888888888888888


Q ss_pred             CCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcC---CCCCEEEcccc
Q 035895          226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGL---KSLQFLSLGHN  293 (527)
Q Consensus       226 ~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N  293 (527)
                      .+|..+.. -.|..||++.|++. .+|-.|.+|+.|++|.|.+|.+. .+|..++-.   .=.++|+...+
T Consensus       203 ~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  203 DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            88888773 35778888888775 57778888888888888888776 566655432   22345555555

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=6.9e-15  Score=137.53  Aligned_cols=106  Identities=27%  Similarity=0.396  Sum_probs=87.8

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------------cCccceeEEEEEe
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------------~~~~~~~~lv~ey  433 (527)
                      +.||+|++|.||+|+. .|..|++|+....                                     +...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5799999999999987 6678999974310                                     1122345689999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ++|++|.+.+....    . .+..++.+++.+++++|   +.+++|||++|.||+++ ++.++++|||.++..
T Consensus        81 ~~G~~L~~~~~~~~----~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         81 IEGEPLKDLINSNG----M-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             eCCcCHHHHHHhcc----H-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            99999999886432    2 67789999999999999   99999999999999999 789999999998864

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.57  E-value=1.5e-14  Score=144.20  Aligned_cols=138  Identities=29%  Similarity=0.375  Sum_probs=105.8

Q ss_pred             CccccceeccCCceEEEEEEccCC--cEEEEEEEeec---------------------------------c-CccceeEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDG--MEFAIKVFHFS---------------------------------C-SNEDFRAL  429 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~--~~vavK~~~~~---------------------------------~-~~~~~~~l  429 (527)
                      .|++.+.||+|+||.||.|.....  ..+|+|+-...                                 - ..+++.++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            799999999999999999986543  57888875321                                 0 23456789


Q ss_pred             EEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-----CcEEEeecccc
Q 035895          430 VLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-----IVAHLSDFGIA  503 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-----~~~kl~Dfg~a  503 (527)
                      ||+.+ |.+|.++..... ..++......|+.|+..+|+++|   +.+++||||||+|++++..     ..+.+.|||+|
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGla  174 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLA  174 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEecCCC
Confidence            99987 679999875444 66888899999999999999999   9999999999999999854     46899999999


Q ss_pred             c--ccCCCCC---ccc---eeccccccccccC
Q 035895          504 K--LLTGEDQ---SMT---QTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~--~~~~~~~---~~~---~~~~~~t~~y~aP  527 (527)
                      +  .+.....   ...   .....||..|+++
T Consensus       175 r~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~  206 (322)
T KOG1164|consen  175 RRFKYVGDSGGNLRPPRPQKGLFRGTLRYASI  206 (322)
T ss_pred             ccccccCCCCcccccCCCCccCCCCccccccH
Confidence            9  3322211   111   1234488888764

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.57  E-value=2.9e-14  Score=132.02  Aligned_cols=113  Identities=44%  Similarity=0.670  Sum_probs=96.8

Q ss_pred             eccCCceEEEEEEccC-CcEEEEEEEeecc------------------------------CccceeEEEEEeccCCcHHH
Q 035895          393 IGRGSFGSVYKARLQD-GMEFAIKVFHFSC------------------------------SNEDFRALVLEYTTNGSLEK  441 (527)
Q Consensus       393 lg~G~~g~vy~~~~~~-~~~vavK~~~~~~------------------------------~~~~~~~lv~ey~~~g~L~~  441 (527)
                      ||+|++|.||++.... ++.+++|++....                              ......+++|||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999764 8999999875421                              11235679999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCC
Q 035895          442 VLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       442 ~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~  508 (527)
                      ++.......++..+..++.+++++++|+|   +.+++|+||+|.||+++. ++.++++|||.+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~  145 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTS  145 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccC
Confidence            98765345788899999999999999999   889999999999999998 89999999999987643

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.55  E-value=2.1e-14  Score=133.02  Aligned_cols=103  Identities=25%  Similarity=0.381  Sum_probs=83.7

Q ss_pred             eeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------------cCccceeEEEEEec
Q 035895          392 LIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------------~~~~~~~~lv~ey~  434 (527)
                      .||+|+||.||+|.+ +|..|++|+....                                     +..++..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999985 5678999984310                                     01123347999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      +|++|.+.+.....        .++.+++.+++++|   +.+++|||++|.||+++ ++.+++.|||.++...
T Consensus        80 ~g~~l~~~~~~~~~--------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        80 EGKPLKDVIEEGND--------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             CCccHHHHHhhcHH--------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            99999988754211        68899999999999   99999999999999999 8899999999988643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.53  E-value=4.6e-14  Score=128.03  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------C---------ccceeEEEEEeccCC
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------S---------NEDFRALVLEYTTNG  437 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------~---------~~~~~~lv~ey~~~g  437 (527)
                      .....|++|+||+||.+.. .+..++.+.+....                     .         .-+..+++|||++|.
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~   83 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGA   83 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCc
Confidence            3567899999999998776 56677655543210                     0         012347999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCC-CCCCeeeCCCCcEEEeecccccccC
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL-KPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      +|.+....        ....++.+++++++|+|   +.+|+|||| ||+||+++.++.++|+|||+|....
T Consensus        84 ~L~~~~~~--------~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         84 AMYQRPPR--------GDLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             cHHhhhhh--------hhHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            99765421        12346789999999999   999999999 7999999999999999999998654

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.52  E-value=2.4e-14  Score=136.80  Aligned_cols=135  Identities=23%  Similarity=0.336  Sum_probs=104.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~~~~~~  428 (527)
                      ...|++...+|+|.||.|..+.. +++..||||+++..                                  ....+..+
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiC  167 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHIC  167 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceE
Confidence            56789999999999999999875 34789999987421                                  11123456


Q ss_pred             EEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC----------------
Q 035895          429 LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD----------------  491 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----------------  491 (527)
                      +|+|.+ |-++.+++...+ ..++......++.|++++++|||   +.+++|=||||+|||+-+                
T Consensus       168 ivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~  243 (415)
T KOG0671|consen  168 IVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFI  243 (415)
T ss_pred             EEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCcccee
Confidence            888877 458999997644 34678888899999999999999   999999999999999821                


Q ss_pred             ----CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 ----NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                          ...+||.|||-|+.-.+..     +..+.|.-|.||
T Consensus       244 r~~ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAP  278 (415)
T KOG0671|consen  244 RPLKSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAP  278 (415)
T ss_pred             ccCCCcceEEEecCCcceeccCc-----ceeeeccccCCc
Confidence                2347999999998754322     234567779988

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.52  E-value=4.9e-14  Score=130.65  Aligned_cols=110  Identities=14%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------------------Cc-
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------------------SN-  423 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------------------~~-  423 (527)
                      .+.|+..+++|+|+||.||.+.. ++..+|||+++...                                       .. 
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            46799999999999999999766 56789999985200                                       00 


Q ss_pred             ------cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          424 ------EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       424 ------~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                            ....++||||++|.+|.++..     .+.    ....+++.+++.+|   ..+++|||+||+||++++++ +++
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~-----~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g-i~l  175 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPE-----ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG-LRI  175 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhh-----ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC-EEE
Confidence                  123679999999999988631     122    24568999999999   99999999999999999888 999


Q ss_pred             eecccccccC
Q 035895          498 SDFGIAKLLT  507 (527)
Q Consensus       498 ~Dfg~a~~~~  507 (527)
                      +|||..+...
T Consensus       176 iDfg~~~~~~  185 (232)
T PRK10359        176 IDLSGKRCTA  185 (232)
T ss_pred             EECCCccccc
Confidence            9999887653

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.52  E-value=7.8e-14  Score=132.49  Aligned_cols=124  Identities=42%  Similarity=0.520  Sum_probs=100.3

Q ss_pred             CceEEEEEEcc-CCcEEEEEEEeecc------------------------------CccceeEEEEEeccCCcHHHHHHh
Q 035895          397 SFGSVYKARLQ-DGMEFAIKVFHFSC------------------------------SNEDFRALVLEYTTNGSLEKVLYS  445 (527)
Q Consensus       397 ~~g~vy~~~~~-~~~~vavK~~~~~~------------------------------~~~~~~~lv~ey~~~g~L~~~l~~  445 (527)
                      +||.||+|... +++.+|+|++....                              ......+++|||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999976 48999999975321                              123466899999999999999875


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccc
Q 035895          446 SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM  525 (527)
Q Consensus       446 ~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~  525 (527)
                      ... +++.....++.+++.+++|+|   +.+++|+||+|.||++++++.++++|||.+.......   ......++..|+
T Consensus        81 ~~~-~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~  153 (244)
T smart00220       81 RGR-LSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYM  153 (244)
T ss_pred             ccC-CCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCC
Confidence            433 788889999999999999999   8999999999999999999999999999998765332   112234566788


Q ss_pred             cC
Q 035895          526 AP  527 (527)
Q Consensus       526 aP  527 (527)
                      ||
T Consensus       154 ~p  155 (244)
T smart00220      154 AP  155 (244)
T ss_pred             CH
Confidence            76

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.52  E-value=3.3e-14  Score=151.43  Aligned_cols=110  Identities=24%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEe-e------------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFH-F------------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~-~------------------------------------~~~~~~~  426 (527)
                      ...|...+.||+|+||.||+|.+.... +++|+.. .                                    .+..++.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            344567899999999999999875443 3333211 0                                    0112234


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||++|++|.+++.         ....++.+++++++|+|   +.+|+|||+||+||++ +++.++++|||+++..
T Consensus       411 ~~lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             CEEEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            579999999999998874         34678999999999999   9999999999999999 5789999999999875


Q ss_pred             C
Q 035895          507 T  507 (527)
Q Consensus       507 ~  507 (527)
                      .
T Consensus       478 ~  478 (535)
T PRK09605        478 D  478 (535)
T ss_pred             C
Confidence            3

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.51  E-value=6.6e-16  Score=153.97  Aligned_cols=215  Identities=30%  Similarity=0.404  Sum_probs=170.5

Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCc
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN  174 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  174 (527)
                      .|.|++-++..+.-..+..-.......||+.|++. .+|..+..+..|+.+.|.+|.+. .+|..++.+..|++|||+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence            45566666665433333211123456889999998 67888888889999999999998 56788999999999999999


Q ss_pred             ccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCcc
Q 035895          175 ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK  254 (527)
Q Consensus       175 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~  254 (527)
                      +++ .+|..+|.|+ |+.|.+++|+++ .+|+.++.+..|..|+.+.|.+..+|..++.+..|+.|.+..|++. .+|..
T Consensus       132 qlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E  207 (722)
T KOG0532|consen  132 QLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE  207 (722)
T ss_pred             hhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH
Confidence            998 7888888887 899999999998 6778888889999999999999999999999999999999998876 46677


Q ss_pred             ccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCC---CCCCCEEeCCCCc
Q 035895          255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD---LVSLESLDLSNNN  318 (527)
Q Consensus       255 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---l~~L~~L~ls~N~  318 (527)
                      +..|+ |..||+|+|+++ .+|-.|..|+.|++|.|.+|.++ ..|..+..   ..-.++|+..-++
T Consensus       208 l~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  208 LCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            77665 888999999997 68999999999999999999997 56655432   2234566665553

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.49  E-value=4e-14  Score=137.03  Aligned_cols=115  Identities=32%  Similarity=0.433  Sum_probs=96.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec----------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS----------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~----------------------------~~~~~~~~lv~  431 (527)
                      ...|...++||+|.|++||+|...    ..+.||+|.+...                            ...++.+.+||
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivl  114 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVL  114 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEe
Confidence            456889999999999999999753    4678999987431                            13467889999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Dfg~a~~  505 (527)
                      ||++.-+..++...    ++..+...+...+..||+++|   ..|||||||||.|+|.+ ..++-.+.|||+|..
T Consensus       115 p~~~H~~f~~l~~~----l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  115 PYFEHDRFRDLYRS----LSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             cccCccCHHHHHhc----CCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEechhHHH
Confidence            99999888888754    456677789999999999999   99999999999999998 567889999999973

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.49  E-value=1.4e-14  Score=135.25  Aligned_cols=130  Identities=28%  Similarity=0.299  Sum_probs=98.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------------cCccceeE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------------CSNEDFRA  428 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------------~~~~~~~~  428 (527)
                      |--.+.+|.|+- .|..|-. -.+++||+|++...                                     .......+
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            445567777777 5555543 25678888875210                                     01112457


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|||||.. +|...+.   ..++......|..|++.|+.|+|   +.+|+||||||+||++..++.+||.|||+|+.-..
T Consensus        98 ~v~e~m~~-nl~~vi~---~elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~  170 (369)
T KOG0665|consen   98 LVMELMDA-NLCQVIL---MELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDT  170 (369)
T ss_pred             HHHHhhhh-HHHHHHH---HhcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhhcccCc
Confidence            89999974 8888876   34677788889999999999999   99999999999999999999999999999986432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                         ....+..+.|..|.||
T Consensus       171 ---~~~mtpyVvtRyyrap  186 (369)
T KOG0665|consen  171 ---DFMMTPYVVTRYYRAP  186 (369)
T ss_pred             ---ccccCchhheeeccCc
Confidence               2345566778889998

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.48  E-value=9.8e-14  Score=137.02  Aligned_cols=135  Identities=29%  Similarity=0.403  Sum_probs=106.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~~~l  429 (527)
                      ..|.+....|+|-|+.|.+|+.. .|..||||+++..                                  ..+.+..|+
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl  511 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL  511 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence            35778888999999999999864 5789999998531                                  123457789


Q ss_pred             EEEeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeccccccc
Q 035895          430 VLEYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLL  506 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~~  506 (527)
                      |+|-+. -+|.+++.+.+.  .+.......++.|+..||..|-   ..+|+|.||||.|||+++. ..+|+||||-|...
T Consensus       512 VFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~  587 (752)
T KOG0670|consen  512 VFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDFGSASFA  587 (752)
T ss_pred             Eehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccCcccccc
Confidence            999886 499999987654  3566677789999999999999   9999999999999999864 67899999999887


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..+.-    |....+..|.||
T Consensus       588 ~enei----tPYLVSRFYRaP  604 (752)
T KOG0670|consen  588 SENEI----TPYLVSRFYRAP  604 (752)
T ss_pred             ccccc----cHHHHHHhccCc
Confidence            64431    222334567777

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.5e-13  Score=149.25  Aligned_cols=119  Identities=33%  Similarity=0.427  Sum_probs=99.6

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc-----------------------------CccceeEEEEEe
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-----------------------------SNEDFRALVLEY  433 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-----------------------------~~~~~~~lv~ey  433 (527)
                      ..+.|.+.+.||+|+||.||+|...+|+.||+|+=...+                             ...+...+|+||
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey  775 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEY  775 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeec
Confidence            345688899999999999999999889999999843211                             123445699999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-------CCCcEEEeecccccc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-------DNIVAHLSDFGIAKL  505 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-------~~~~~kl~Dfg~a~~  505 (527)
                      .+.|+|-+++. ....+++.-.+.++.+++..++.+|   ..+|||+||||+|++|.       +...++|+|||.+--
T Consensus       776 ~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  776 SPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             cccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            99999999997 4456888888999999999999999   99999999999999993       235689999999853

>PRK10345 hypothetical protein; Provisional

Probab=99.45  E-value=4.3e-13  Score=123.97  Aligned_cols=109  Identities=17%  Similarity=0.335  Sum_probs=77.2

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEeec-----------------c-----------------Ccc---ceeE-E
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-----------------C-----------------SNE---DFRA-L  429 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-----------------~-----------------~~~---~~~~-l  429 (527)
                      +-.+.||+|+||.||. .-.++.. +||++...                 .                 .++   +..+ +
T Consensus         5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             CCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence            4467999999999996 3234444 68876421                 0                 001   1223 7


Q ss_pred             EEEe--ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HHHhcCCCCCeEecCCCCCCeeeCC----CCcEEEee-cc
Q 035895          430 VLEY--TTNGSLEKVLYSSNYILDILQRLNIMIDVTSAL-EYLHFGYSTPIIHCDLKPHNKLLDD----NIVAHLSD-FG  501 (527)
Q Consensus       430 v~ey--~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l-~ylH~~~~~~iiHrdlk~~nill~~----~~~~kl~D-fg  501 (527)
                      ||||  +++|+|.+++...  .++..  ..++.+++.++ +|+|   +++||||||||+||+++.    +..++|+| ||
T Consensus        83 I~e~~G~~~~tL~~~l~~~--~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G  155 (210)
T PRK10345         83 IADFDGKPSITLTEFAEQC--RYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVVCDNIG  155 (210)
T ss_pred             EecCCCCcchhHHHHHHcc--cccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEEEECCC
Confidence            8999  6689999999653  34443  34567777777 9999   999999999999999973    34899999 55


Q ss_pred             cccc
Q 035895          502 IAKL  505 (527)
Q Consensus       502 ~a~~  505 (527)
                      .+..
T Consensus       156 ~~~~  159 (210)
T PRK10345        156 ESTF  159 (210)
T ss_pred             Ccce
Confidence            5444

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.43  E-value=4.6e-13  Score=138.01  Aligned_cols=113  Identities=27%  Similarity=0.324  Sum_probs=87.1

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeecc------------------------------------------------
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC------------------------------------------------  421 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~------------------------------------------------  421 (527)
                      .+.||.|++|.||+|++++|+.||||+.+...                                                
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            36899999999999999999999999964210                                                


Q ss_pred             -------------Cc-------------cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHHHhcCCC
Q 035895          422 -------------SN-------------EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS-ALEYLHFGYS  474 (527)
Q Consensus       422 -------------~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~-~l~ylH~~~~  474 (527)
                                   .+             ....++||||++|++|.++........+   +..++..++. .+..+|   .
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~---~~~ia~~~~~~~l~ql~---~  275 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLD---RKALAENLARSFLNQVL---R  275 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCC---HHHHHHHHHHHHHHHHH---h
Confidence                         00             0123599999999999887643221222   3446666655 467788   8


Q ss_pred             CCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       475 ~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      .+++|+|++|.||++++++++++.|||++..++.
T Consensus       276 ~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       276 DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             CCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            9999999999999999999999999999987753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=3.9e-13  Score=138.23  Aligned_cols=200  Identities=34%  Similarity=0.496  Sum_probs=126.8

Q ss_pred             EEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCC-CCCEEeccCcccccccChhhhcCcccCeeeeecc
Q 035895          120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQ-KLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN  198 (527)
Q Consensus       120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N  198 (527)
                      .++++.|.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            34555555431 22233344566666666666663 333344443 6777777777666 44455666777777777777


Q ss_pred             cCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhh
Q 035895          199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTT  278 (527)
Q Consensus       199 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  278 (527)
                      +++. +|...+.++.|+.|++++|+++.+|........|..+.+++|... ..+..+..+..+..+.+++|++. .++..
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence            7763 444344666777777777777777766555555667777766432 34455667777777777777775 34667


Q ss_pred             hhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccch
Q 035895          279 IQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSL  327 (527)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~  327 (527)
                      ++.++++++|++++|.++.. +. +..+.+++.|++++|.+...+|...
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhhh
Confidence            77778888888888888743 33 7778888888888888877666543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.38  E-value=3.1e-12  Score=126.95  Aligned_cols=136  Identities=42%  Similarity=0.581  Sum_probs=107.0

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------------CccceeEEEEEe
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------------SNEDFRALVLEY  433 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------------~~~~~~~lv~ey  433 (527)
                      |...+.||+|+||.||++...  ..+|+|.+....                                 ......++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            677889999999999999877  678888763210                                 112234799999


Q ss_pred             ccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~  510 (527)
                      +.++++.+++....  ..........++.+++.+++|+|   +.+++|||+||+||+++..+ .++++|||.++......
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            99999997776543  25777788899999999999999   99999999999999999888 79999999998664332


Q ss_pred             Ccc----ceeccccccccccC
Q 035895          511 QSM----TQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~----~~~~~~~t~~y~aP  527 (527)
                      ...    ......++.+|+||
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~p  177 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAP  177 (384)
T ss_pred             ccccccccccccccccccCCH
Confidence            211    12345688999998

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.36  E-value=6.9e-13  Score=148.21  Aligned_cols=76  Identities=14%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC--------------
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD--------------  491 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--------------  491 (527)
                      ..+.+|||+ +++|.+++......+++.++..++.||++||+|||   +++||||||||+|||++.              
T Consensus        54 ~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~  129 (793)
T PLN00181         54 SIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAH---SQGIVVHNVRPSCFVMSSFNHVSFIESASCSD  129 (793)
T ss_pred             hhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHH---hCCeeeccCCchhEEEcccCcEEEeeccccCc
Confidence            455678887 56999999765566899999999999999999999   999999999999999954              


Q ss_pred             -----CCcEEEeecccccc
Q 035895          492 -----NIVAHLSDFGIAKL  505 (527)
Q Consensus       492 -----~~~~kl~Dfg~a~~  505 (527)
                           ++.+|++|||+++.
T Consensus       130 ~~~~~~~~~ki~DfG~a~~  148 (793)
T PLN00181        130 SGSDEDATTKSREIGSSRR  148 (793)
T ss_pred             ccccccCcccccccccccc
Confidence                 45667777777764

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.36  E-value=4.6e-12  Score=111.16  Aligned_cols=109  Identities=22%  Similarity=0.295  Sum_probs=87.4

Q ss_pred             ccceeccCCceEEEEEEccCCcEEEEEEEeecc-----------------------------CccceeEEEEEeccCCcH
Q 035895          389 ANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-----------------------------SNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-----------------------------~~~~~~~lv~ey~~~g~L  439 (527)
                      +.+.||+|.++.||+++..+ ..+++|......                             ...+..+++|||++++.+
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~   80 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETL   80 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeec
Confidence            35789999999999999865 688999864311                             112346799999998877


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          440 EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       440 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ..+        +......++.+++++++++|.....+++|+|++|+||++++.+.+++.|||.++..
T Consensus        81 ~~~--------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          81 DEV--------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ccC--------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            643        44566778899999999999554468999999999999999899999999998864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=1.5e-12  Score=133.90  Aligned_cols=202  Identities=32%  Similarity=0.440  Sum_probs=144.7

Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCc-CCcEEEeecCcccccCcccccCCCCCCEEeccC
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT-DLISIDLGGNKLNGSISITLGKLQKLQFLSFRG  173 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  173 (527)
                      .++++.|.+.... ..+... ..++.|++.+|.++. ++.....+. +|+.|++++|.+.. .|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~-~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLEL-TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhcc-cceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence            5777777764322 223333 357788888888874 444445553 78888888888874 335567788888888888


Q ss_pred             cccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCc
Q 035895          174 NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS  253 (527)
Q Consensus       174 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~  253 (527)
                      |++. .+|...+.++.|+.|++++|+++ .+|.....+..|++|.+++|.+..++..+.++..+..+.+.+|++.. ++.
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc
Confidence            8887 56666667788888888888887 45554555566888888888777777777777888877777776653 366


Q ss_pred             cccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCC
Q 035895          254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD  305 (527)
Q Consensus       254 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  305 (527)
                      .++.++.+++|++++|.++...+  +..+.+++.|++++|.+....|.....
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence            77888889999999998874433  888889999999999888666655443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.33  E-value=9.8e-12  Score=117.96  Aligned_cols=107  Identities=20%  Similarity=0.300  Sum_probs=81.8

Q ss_pred             ceec-cCCceEEEEEEccCCcEEEEEEEee----------c---------------------------c-------C-cc
Q 035895          391 NLIG-RGSFGSVYKARLQDGMEFAIKVFHF----------S---------------------------C-------S-NE  424 (527)
Q Consensus       391 ~~lg-~G~~g~vy~~~~~~~~~vavK~~~~----------~---------------------------~-------~-~~  424 (527)
                      ..|| .||.|+||++... +..++||.+..          .                           +       . ..
T Consensus        37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5787 8999999998875 66788886521          0                           0       0 00


Q ss_pred             c---eeEEEEEeccC-CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          425 D---FRALVLEYTTN-GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       425 ~---~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      .   ..++||||++| ++|.+++...  .++..    .+.++++++.++|   +.+|+||||||+|||++.++.++++||
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~--~l~~~----~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~~v~LIDf  186 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEA--PLSEE----QWQAIGQLIARFH---DAGVYHADLNAHNILLDPDGKFWLIDF  186 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcC--CCCHH----HHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCCCEEEEEC
Confidence            1   12499999997 6999887542  23332    3568999999999   999999999999999998889999999


Q ss_pred             ccccccC
Q 035895          501 GIAKLLT  507 (527)
Q Consensus       501 g~a~~~~  507 (527)
                      |.++...
T Consensus       187 g~~~~~~  193 (239)
T PRK01723        187 DRGELRT  193 (239)
T ss_pred             CCcccCC
Confidence            9988754

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=8.2e-12  Score=122.92  Aligned_cols=105  Identities=32%  Similarity=0.411  Sum_probs=85.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------------cCc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------------CSN  423 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------------~~~  423 (527)
                      +.|.+.++||=|.|++||+|.. ...+-||+|+.+.+                                        -..
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN  157 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN  157 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence            4578899999999999999985 56789999997531                                        011


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN  492 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~  492 (527)
                      ...+++|+||+ |-+|-.+|.+..+ .++.....+|+.||+.||.|||.  ..+|||-||||+|||+...
T Consensus       158 G~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~--ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  158 GQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHR--ECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH--hcCccccCCCcceeeeecc
Confidence            23568999998 5688888876543 47888899999999999999995  5699999999999999644

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.25  E-value=5.5e-12  Score=120.86  Aligned_cols=145  Identities=20%  Similarity=0.279  Sum_probs=108.9

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEccC------CcEEEEEEEe-------------------------------eccC
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQD------GMEFAIKVFH-------------------------------FSCS  422 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~------~~~vavK~~~-------------------------------~~~~  422 (527)
                      +......++....+-||.||.||+|.+++      .+.|-+|.++                               .+..
T Consensus       279 l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie  358 (563)
T KOG1024|consen  279 LTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIE  358 (563)
T ss_pred             hhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEee
Confidence            33344457778889999999999996643      2344455431                               1122


Q ss_pred             ccceeEEEEEeccCCcHHHHHHh-----cC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYS-----SN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~-----~~--~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                      +.+.++..+.|+.-|+|..++..     ..  ..+...+.+-++.|++.|++|+|   +++|||.||-++|+++|+..++
T Consensus       359 ~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~LqV  435 (563)
T KOG1024|consen  359 DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQLQV  435 (563)
T ss_pred             ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhheeE
Confidence            34567788999999999999972     11  23566677889999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |++|-.++|.+.+.+...-....-....||||
T Consensus       436 kltDsaLSRDLFP~DYhcLGDnEnRPvkWMsl  467 (563)
T KOG1024|consen  436 KLTDSALSRDLFPGDYHCLGDNENRPVKWMSL  467 (563)
T ss_pred             EeccchhccccCcccccccCCCCCCcccccCH
Confidence            99999999987666554433333456778885

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=2.4e-12  Score=119.36  Aligned_cols=206  Identities=23%  Similarity=0.296  Sum_probs=134.8

Q ss_pred             hhhhcchhcc---------cCCCceeecCchhhhcCCCCCEEEccccc---cccc--cccccceEEcccccccCCCCCCc
Q 035895           17 GDVCYRICTI---------DSQNKLVGIVSITIFNLSTLKVFDVDNNY---VLGR--LSSIVDELSLSDNYLTSSTPELS   82 (527)
Q Consensus        17 ~~~~~~~~~~---------~s~N~l~~~~~~~~~~l~~L~~L~Ls~N~---~~~~--~~~~l~~L~Ls~N~l~~~~~~~~   82 (527)
                      -|+|.|+-.+         +..|-+....|--+.-+.+|+.+.+|+..   +.+.  ..+.++.+...+.-++..+.-++
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence            4667665432         33444444445434445566666666553   3322  22345566555554443221111


Q ss_pred             ------------------ccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcE
Q 035895           83 ------------------FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLIS  144 (527)
Q Consensus        83 ------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  144 (527)
                                        ....+..++.|++||||+|.|+.+ .++. .+.+.+++|++|+|.|..+  ..+..+++|+.
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESv-KL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~  333 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESV-KLAPKLRRLILSQNRIRTV--QNLAELPQLQL  333 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhh-hhccceeEEeccccceeee--hhhhhcccceE
Confidence                              011233456788999999998864 3443 3446799999999998743  33788899999


Q ss_pred             EEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCC-CccccCCccCceeeCCCCC
Q 035895          145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI-PTCFGNLTALRNLHLDSNE  223 (527)
Q Consensus       145 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~  223 (527)
                      |||++|.++. +...-.++.+.+.|.|++|.|..  -+.+..+-+|..||+++|+|.... -..+++++.|+.+.|.+|.
T Consensus       334 LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  334 LDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eecccchhHh-hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            9999999874 44455678888999999998863  245677888899999999987432 2458889999999999999


Q ss_pred             CCCCch
Q 035895          224 LTSIPS  229 (527)
Q Consensus       224 l~~lp~  229 (527)
                      +..+|+
T Consensus       411 l~~~vd  416 (490)
T KOG1259|consen  411 LAGSVD  416 (490)
T ss_pred             ccccch
Confidence            988775

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.21  E-value=7.3e-11  Score=123.23  Aligned_cols=117  Identities=21%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             CCccccceeccCCceEEEEEEccC-CcEEEEEEEeecc------------------------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVFHFSC------------------------------------------  421 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~-~~~vavK~~~~~~------------------------------------------  421 (527)
                      ..|+. +.||.|++|+||+|++++ |+.||||+.+...                                          
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34666 789999999999999987 9999999975210                                          


Q ss_pred             -------------------Ccc-------------ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHH
Q 035895          422 -------------------SNE-------------DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS-ALEY  468 (527)
Q Consensus       422 -------------------~~~-------------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~-~l~y  468 (527)
                                         .+.             ...++||||++|+++.++-.-.....+.   ..++...+. .+.-
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~---~~la~~~v~~~~~Q  275 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDM---KLLAERGVEVFFTQ  275 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCH---HHHHHHHHHHHHHH
Confidence                               001             1224999999999998752211111221   122222221 1222


Q ss_pred             HhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccccccCC
Q 035895          469 LHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIAKLLTG  508 (527)
Q Consensus       469 lH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a~~~~~  508 (527)
                      ++   ..+++|+|+||.||+++.++    ++++.|||+...++.
T Consensus       276 if---~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        276 VF---RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HH---hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            33   78999999999999999887    999999999987754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.8e-12  Score=126.04  Aligned_cols=135  Identities=24%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             CcCCcEEEeecCccccc-CcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCC-ccccCCccCce
Q 035895          139 LTDLISIDLGGNKLNGS-ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRN  216 (527)
Q Consensus       139 l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~  216 (527)
                      +++|+.|.|+.|.++.. +......+|+|+.|+|.+|..-........-+..|+.|||++|.+-.... ...+.++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            34444444444444311 11122234455555555553211222223334445555555555442210 12344555555


Q ss_pred             eeCCCCCCCCC--chh-----hhCCCCccEEEccCCcccc-cCCccccCCCCCCEEEccCCCCCC
Q 035895          217 LHLDSNELTSI--PSI-----LWNLKDILYLDFWSNLFVG-PLPSKIGNLKVLTRIDFSRNNLLG  273 (527)
Q Consensus       217 L~L~~N~l~~l--p~~-----~~~l~~L~~l~l~~n~~~~-~~p~~~~~l~~L~~L~Ls~N~l~~  273 (527)
                      |+++.+.+.++  |+.     ....+.|++|++..|++.. ..-..+..+++|+.|.+..|.+..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            55555555442  222     2234455555555555421 111223445667777777777753

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=3.5e-11  Score=128.15  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=78.2

Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      +||||++ ||...+... ..+...++-.++.|+..|+.|+|   ..+|.|||+|++|+++..+|.+||+|||.+..+...
T Consensus       399 ~mE~~~~-Dlf~~~~~~-~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~  473 (601)
T KOG0590|consen  399 SMEYCPY-DLFSLVMSN-GKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYP  473 (601)
T ss_pred             hhhcccH-HHHHHHhcc-cccchhhhhHHHHHHHHHHHHHH---hcCceeccCccccEEEecCCceEEeecCcceeeccC
Confidence            4999999 999988653 35677788889999999999999   999999999999999999999999999999865422


Q ss_pred             --CCccceeccccccccccC
Q 035895          510 --DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 --~~~~~~~~~~~t~~y~aP  527 (527)
                        .........+|+-+|+||
T Consensus       474 ~e~~~~~~~g~~gS~pY~ap  493 (601)
T KOG0590|consen  474 WEKNIHESSGIVGSDPYLAP  493 (601)
T ss_pred             cchhhhhhcCcccCCcCcCc
Confidence              222445567788899998

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=8.5e-12  Score=121.42  Aligned_cols=214  Identities=20%  Similarity=0.190  Sum_probs=116.7

Q ss_pred             CCCCCCCEEEcccCCCCcccC-hhHhhccccccEEEcccCcccccc--chhhcCCcCCcEEEeecCcccccCcc-cccCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLP-RVVGNFSQSLEFIWMSDCNISGGI--SEEIGNLTDLISIDLGGNKLNGSISI-TLGKL  163 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l  163 (527)
                      +++++|++..|.+..+..... .....+ ++++.||||+|-+....  -.....+++|+.|+|+.|++.-.... .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhC-CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            356677777777776653211 123333 36777777777665332  23446677777888887777522211 12246


Q ss_pred             CCCCEEeccCcccccc-cChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch--hhhCCCCccEE
Q 035895          164 QKLQFLSFRGNELEGS-IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS--ILWNLKDILYL  240 (527)
Q Consensus       164 ~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~l  240 (527)
                      ++|+.|.|+.|.++-. +-.....+++|+.|+|..|............+..|++|+|++|++-..+.  ....++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            6777777877777521 22234556777778877775333333445556677777777777766652  33444444444


Q ss_pred             EccCCccccc-CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceee-cCCCCCCCCCCCEEeCCCCc
Q 035895          241 DFWSNLFVGP-LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS-IPNSFDDLVSLESLDLSNNN  318 (527)
Q Consensus       241 ~l~~n~~~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ls~N~  318 (527)
                      +++.+.+.+. .|+.                   ..-+--..+++|++|+++.|+|..- .-+.+..+++|+.|.+..|.
T Consensus       277 nls~tgi~si~~~d~-------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDV-------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hccccCcchhcCCCc-------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            4444443321 1110                   0000123445667777777766311 11223345566666666666


Q ss_pred             ccc
Q 035895          319 LSE  321 (527)
Q Consensus       319 l~~  321 (527)
                      ++.
T Consensus       338 ln~  340 (505)
T KOG3207|consen  338 LNK  340 (505)
T ss_pred             ccc
Confidence            653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=4.1e-11  Score=106.65  Aligned_cols=125  Identities=28%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             cCcccCeeeeecccCCCCCCcccc-CCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEE
Q 035895          186 HLAVLFQLDLRGNKLSGSIPTCFG-NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRI  264 (527)
Q Consensus       186 ~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L  264 (527)
                      +...+++|+|++|+|+.+  +.++ .+.+|+.|++++|.|+.++                         .+..++.|++|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------~l~~L~~L~~L   69 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-------------------------GLPGLPRLKTL   69 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-------------------------T----TT--EE
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-------------------------CccChhhhhhc
Confidence            333455566666665532  1233 3455555666665555443                         25567889999


Q ss_pred             EccCCCCCCCChhhhhcCCCCCEEEcccccceeec-CCCCCCCCCCCEEeCCCCcccccCc---cchhhhccCCeeE
Q 035895          265 DFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI-PNSFDDLVSLESLDLSNNNLSEIIP---LSLEKLLYLNILL  337 (527)
Q Consensus       265 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~  337 (527)
                      ++++|+++...+.....+++|++|++++|+|...- -..+..+++|+.|+|.+|+++...-   ..+..+++|+.||
T Consensus        70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             E--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            99999998543333357899999999999997421 1345678999999999999986532   2456778888776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=4.2e-12  Score=117.72  Aligned_cols=132  Identities=26%  Similarity=0.330  Sum_probs=73.7

Q ss_pred             ccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccC
Q 035895          189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR  268 (527)
Q Consensus       189 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~  268 (527)
                      .|+.||||+|.|+ .+.++..-++.++.|++|+|.|..+.. +..+.+|+.||+++|.++. +..+-..+.+.++|.|+.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence            3444444444443 233333344444444444444444332 3344444444444444332 112223455667777777


Q ss_pred             CCCCCCChhhhhcCCCCCEEEcccccceee-cCCCCCCCCCCCEEeCCCCcccccCcc
Q 035895          269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGS-IPNSFDDLVSLESLDLSNNNLSEIIPL  325 (527)
Q Consensus       269 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~  325 (527)
                      |.+..  -..++.+-+|..||+++|+|... .-..++++|-|+.+.|.+|++.+++.-
T Consensus       362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            77652  23466777888888888888632 224678888899999999998876543

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=7e-11  Score=127.49  Aligned_cols=107  Identities=34%  Similarity=0.484  Sum_probs=97.2

Q ss_pred             CCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCC
Q 035895          141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLD  220 (527)
Q Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  220 (527)
                      .++.|+|++|.+++.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CchhhhCC-CCccEEEccCCcc
Q 035895          221 SNELTS-IPSILWNL-KDILYLDFWSNLF  247 (527)
Q Consensus       221 ~N~l~~-lp~~~~~l-~~L~~l~l~~n~~  247 (527)
                      +|++++ +|..+..+ .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            999986 88887654 4667888888854

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=1.5e-10  Score=124.86  Aligned_cols=109  Identities=29%  Similarity=0.475  Sum_probs=100.9

Q ss_pred             CCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-CchhhhCCCCccEEEcc
Q 035895          165 KLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFW  243 (527)
Q Consensus       165 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~l~l~  243 (527)
                      .++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++ +|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             CCcccccCCccccCC-CCCCEEEccCCCCCC
Q 035895          244 SNLFVGPLPSKIGNL-KVLTRIDFSRNNLLG  273 (527)
Q Consensus       244 ~n~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~  273 (527)
                      +|.+.+.+|..++.+ .++..+++++|....
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999988764 467889999987554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=6.2e-11  Score=105.48  Aligned_cols=79  Identities=28%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             CCCCCCEEeccCcccccccChhh-hcCcccCeeeeecccCCCCCC-ccccCCccCceeeCCCCCCCCCch----hhhCCC
Q 035895          162 KLQKLQFLSFRGNELEGSIPNVL-CHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDSNELTSIPS----ILWNLK  235 (527)
Q Consensus       162 ~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~  235 (527)
                      .+++|+.|++++|+|+. ++..+ ..+++|+.|++++|+|...-. ..+..+++|++|+|.+|.++.-+.    .+..++
T Consensus        62 ~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP  140 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP  140 (175)
T ss_dssp             --TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred             ChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence            34444444444444442 22222 234444444444444432111 234455666666666666654332    233444


Q ss_pred             CccEEE
Q 035895          236 DILYLD  241 (527)
Q Consensus       236 ~L~~l~  241 (527)
                      +|+.||
T Consensus       141 ~Lk~LD  146 (175)
T PF14580_consen  141 SLKVLD  146 (175)
T ss_dssp             T-SEET
T ss_pred             hhheeC
Confidence            444444

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.06  E-value=1.6e-11  Score=125.05  Aligned_cols=126  Identities=29%  Similarity=0.390  Sum_probs=96.5

Q ss_pred             eeccCCceEEEEEEc----cCCcEEEEEEEeec--------------------------------cCccceeEEEEEecc
Q 035895          392 LIGRGSFGSVYKARL----QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~----~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~ey~~  435 (527)
                      ++|+|+||.|+.++.    +.|..+|+|+....                                ...+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            479999999998753    44667787765321                                122334467889999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      ||++...+.... .++......+..+++-+++.+|   +.+|+|||+|++||+++.+|++++.|||+++......     
T Consensus        81 gg~lft~l~~~~-~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~-----  151 (612)
T KOG0603|consen   81 GGDLFTRLSKEV-MFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK-----  151 (612)
T ss_pred             cchhhhccccCC-chHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHhhh-----
Confidence            999988775543 3444455566778899999999   9999999999999999999999999999999875432     


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                       ..+||..||||
T Consensus       152 -~~cgt~eymAp  162 (612)
T KOG0603|consen  152 -IACGTYEYRAP  162 (612)
T ss_pred             -hcccchhhhhh
Confidence             12789999998

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.05  E-value=5e-10  Score=100.66  Aligned_cols=103  Identities=20%  Similarity=0.279  Sum_probs=77.8

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------CccceeEEEEEeccCCcHHHH
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------SNEDFRALVLEYTTNGSLEKV  442 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------~~~~~~~lv~ey~~~g~L~~~  442 (527)
                      .+.++.|.++.||+++.. +..|++|+.....                           ...+..++||||++|.++.+.
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~   81 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTE   81 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccccc
Confidence            467899999999999865 6789999853211                           011234799999999887643


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          443 LYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP-----IIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       443 l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-----iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                          . .    ....++.+++++++.+|   +.+     ++|+|++|.||+++ ++.+++.|||.+..-
T Consensus        82 ----~-~----~~~~~~~~l~~~l~~LH---~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          82 ----D-F----SDPENLEKIAKLLKKLH---SSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             ----c-c----cCHHHHHHHHHHHHHHh---CCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC
Confidence                0 0    11235678999999999   555     59999999999999 668999999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3.9e-11  Score=113.87  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             cCCCCCCEEEccCCCCCCCChhhh-----hcCCCCCEEEccccccee----ecCCCCCCCCCCCEEeCCCCcc
Q 035895          256 GNLKVLTRIDFSRNNLLGDIPTTI-----QGLKSLQFLSLGHNRLQG----SIPNSFDDLVSLESLDLSNNNL  319 (527)
Q Consensus       256 ~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l  319 (527)
                      +.+++|+.|++++|.+...-..+|     ...++|+.|.|.+|.|+.    .+-......+.|+.|+|++|++
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            334445555555555443222211     123455555555555431    1112223344555555555555

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.97  E-value=2.6e-09  Score=102.41  Aligned_cols=116  Identities=28%  Similarity=0.478  Sum_probs=80.8

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccC-------------------------------------------
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCS-------------------------------------------  422 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~-------------------------------------------  422 (527)
                      +...+.||.|+|+.||.++. ++++++|+|++.....                                           
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            45568999999999999997 4699999999743100                                           


Q ss_pred             -----------ccc-----eeEEEEEeccCCcHHHHHHh---cCC---CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEec
Q 035895          423 -----------NED-----FRALVLEYTTNGSLEKVLYS---SNY---ILDILQRLNIMIDVTSALEYLHFGYSTPIIHC  480 (527)
Q Consensus       423 -----------~~~-----~~~lv~ey~~~g~L~~~l~~---~~~---~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHr  480 (527)
                                 +..     ..+++|.-+ .+||.+++..   ...   ......++.+..|+.+.++++|   ..+|||+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEec
Confidence                       000     113566666 4588887542   111   1334455677789999999999   9999999


Q ss_pred             CCCCCCeeeCCCCcEEEeeccccccc
Q 035895          481 DLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       481 dlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||||+|++++.+|.+.++||+.....
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~  195 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRA  195 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEET
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeec
Confidence            99999999999999999999887654

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.96  E-value=5.3e-09  Score=95.02  Aligned_cols=111  Identities=23%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             ceeccCCceEEEEEEccC-------CcEEEEEEEeeccC-----------c-----------------------------
Q 035895          391 NLIGRGSFGSVYKARLQD-------GMEFAIKVFHFSCS-----------N-----------------------------  423 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~-------~~~vavK~~~~~~~-----------~-----------------------------  423 (527)
                      .+||.|.=+.||.|.-.+       +..+|||+++....           +                             
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999997543       47999998753100           0                             


Q ss_pred             -------------cceeEEEEEeccCCcHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCCee
Q 035895          424 -------------EDFRALVLEYTTNGSLEK-VLYSSNYILDILQRLNIMIDVTSALEYL-HFGYSTPIIHCDLKPHNKL  488 (527)
Q Consensus       424 -------------~~~~~lv~ey~~~g~L~~-~l~~~~~~~~~~~~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk~~nil  488 (527)
                                   -...++||||+.++.+.. .+..  ..++..+...+..+++.++.++ |   ..+|||+|+++.||+
T Consensus        83 l~~~Gv~vP~pi~~~~~~lvME~Ig~~~~~~~~Lkd--~~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGDLs~~NIL  157 (197)
T cd05146          83 MQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKD--AKLNDEEMKNAYYQVLSMMKQLYK---ECNLVHADLSEYNML  157 (197)
T ss_pred             HHHcCCCCCeEEEecCCEEEEEEcCCCCccchhhhc--cccCHHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEE
Confidence                         011248999998754422 2221  1234445566778999999998 7   889999999999999


Q ss_pred             eCCCCcEEEeecccccccC
Q 035895          489 LDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       489 l~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++ ++.+.++|||-|-...
T Consensus       158 ~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         158 WH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             EE-CCcEEEEECCCceeCC
Confidence            97 4689999999887654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=6.1e-10  Score=81.49  Aligned_cols=61  Identities=39%  Similarity=0.559  Sum_probs=52.8

Q ss_pred             CCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcc
Q 035895          259 KVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL  319 (527)
Q Consensus       259 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  319 (527)
                      ++|++|++++|++....+..|.++++|++|++++|+++...|+.|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678889999988877778888999999999999999888888999999999999998875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.95  E-value=8.3e-11  Score=121.37  Aligned_cols=245  Identities=25%  Similarity=0.288  Sum_probs=153.1

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ++.+++..|.+....      ..+..+++|+.|++..|+|..+.. .+..+ .+|++|++++|.|+.+.  .+..++.|+
T Consensus        74 l~~l~l~~n~i~~~~------~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~-~~L~~L~ls~N~I~~i~--~l~~l~~L~  143 (414)
T KOG0531|consen   74 LKELNLRQNLIAKIL------NHLSKLKSLEALDLYDNKIEKIEN-LLSSL-VNLQVLDLSFNKITKLE--GLSTLTLLK  143 (414)
T ss_pred             HHhhccchhhhhhhh------cccccccceeeeeccccchhhccc-chhhh-hcchheecccccccccc--chhhccchh
Confidence            344556666665421      124566777778888887776432 13333 36778888888777543  345566678


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccC-hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      .|++++|.|+..  ..+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccc
Confidence            888888887643  235557778888888888764333 2 4667777888888887753  233444555666677777


Q ss_pred             CCCCCchhhhCCC--CccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceee--
Q 035895          223 ELTSIPSILWNLK--DILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS--  298 (527)
Q Consensus       223 ~l~~lp~~~~~l~--~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--  298 (527)
                      .++.+-... .+.  .|+.++++.|.+.. .+..+..+..+..|+++.|++...-  .+.....+..+.+..|.+...  
T Consensus       219 ~i~~~~~l~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  219 KISKLEGLN-ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             cceeccCcc-cchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence            776653211 111  26667777776653 2245566778888888888876432  244556677777777776521  


Q ss_pred             -cCCC-CCCCCCCCEEeCCCCcccccCccch
Q 035895          299 -IPNS-FDDLVSLESLDLSNNNLSEIIPLSL  327 (527)
Q Consensus       299 -~p~~-~~~l~~L~~L~ls~N~l~~~~p~~~  327 (527)
                       .... ....+.++...+..|.+....+...
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRKISSLDL  325 (414)
T ss_pred             hhccccccccccccccccccCcccccccccH
Confidence             1121 4566788888999998877655433

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.94  E-value=5e-10  Score=120.15  Aligned_cols=127  Identities=31%  Similarity=0.454  Sum_probs=90.3

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------cCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHH
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQR  455 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~  455 (527)
                      ...+|+.++.|-.|+||.||.++++ +.+.+|+|+=+..      ....+..+.|      ||-+..+...+. ++.   
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~kiNkq~lilRnilt~a~npfvv------gDc~tllk~~g~-lPv---  150 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNLILRNILTFAGNPFVV------GDCATLLKNIGP-LPV---  150 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhhcccccchhhhccccccCCccee------chhhhhcccCCC-Ccc---
Confidence            3568999999999999999999976 4678999642211      1122333344      566666654332 111   


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC-------------CCccceecccccc
Q 035895          456 LNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE-------------DQSMTQTQTLAII  522 (527)
Q Consensus       456 ~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~-------------~~~~~~~~~~~t~  522 (527)
                           +.+.+++|+|   +.+|+|||+||+|.++..-|++|++|||+++.....             .......+.+||+
T Consensus       151 -----dmvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTP  222 (1205)
T KOG0606|consen  151 -----DMVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTP  222 (1205)
T ss_pred             -----hhhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCc
Confidence                 1166899999   999999999999999999999999999998753211             0112233568999


Q ss_pred             ccccC
Q 035895          523 GYMAP  527 (527)
Q Consensus       523 ~y~aP  527 (527)
                      .|+||
T Consensus       223 eyiaP  227 (1205)
T KOG0606|consen  223 EYIAP  227 (1205)
T ss_pred             cccCh
Confidence            99998

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.1e-09  Score=80.21  Aligned_cols=58  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcc
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE  175 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  175 (527)
                      |++|++++|+++.+.+..|..+++|++|++++|+++...+..|.++++|+.|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555554444555555555555555555554444455555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.2e-10  Score=120.19  Aligned_cols=193  Identities=27%  Similarity=0.317  Sum_probs=85.4

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      ++.++++.|.|.. .-..+..+.+|+.|++..|+|..+.. .+..+++|++|++++|+|+...  .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            4444444444432 12223444455555555555543221 1344555555555555554321  133444455555555


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      |.|+..  ..+..++.|+.+++++|.++.++.. ...+..++.+.+..|.+...  ..+..+..+..+++..|.++..-+
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC
Confidence            555421  2233355555555555555554432 23444444444544444321  122223333333555555442211


Q ss_pred             hhhhcCC--CCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          277 TTIQGLK--SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       277 ~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                        +..+.  .|+.+++++|++. ..+..+..+..+..|++++|++..
T Consensus       226 --l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  226 --LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             --cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence              11111  2555666666655 222444455556666666665543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.90  E-value=3.1e-09  Score=96.05  Aligned_cols=73  Identities=26%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|.+++...+..+++.++..|+.|++.||+|+|   +++      ||+||+++.++.+|+  ||.++......      
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~------   63 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPEQ------   63 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeecccc------
Confidence            7899999876667899999999999999999999   555      999999999999999  99998764321      


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                       ..||+.||||
T Consensus        64 -~~g~~~y~aP   73 (176)
T smart00750       64 -SRVDPYFMAP   73 (176)
T ss_pred             -CCCcccccCh
Confidence             2467899998

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.83  E-value=1.3e-09  Score=103.63  Aligned_cols=185  Identities=18%  Similarity=0.126  Sum_probs=122.5

Q ss_pred             ccCCCCCCEEeccCcccccccChh----hhcCcccCeeeeecccCCCCC-------------CccccCCccCceeeCCCC
Q 035895          160 LGKLQKLQFLSFRGNELEGSIPNV----LCHLAVLFQLDLRGNKLSGSI-------------PTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       160 ~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~-------------p~~~~~l~~L~~L~L~~N  222 (527)
                      +.+.++|+.||||+|.+.-..+..    +..+..|++|.|.+|.+...-             ..-.+.-+.|+++..+.|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            344556666666666554333322    334556666666666553111             111234567999999999


Q ss_pred             CCCCCch-----hhhCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCCCCCC----ChhhhhcCCCCCEEE
Q 035895          223 ELTSIPS-----ILWNLKDILYLDFWSNLFVGP----LPSKIGNLKVLTRIDFSRNNLLGD----IPTTIQGLKSLQFLS  289 (527)
Q Consensus       223 ~l~~lp~-----~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~  289 (527)
                      ++..-+.     .+...+.|..+.+..|.+...    +...+..+++|+.|||.+|-++..    +...+..+++|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            9876553     445567888888888876522    234578899999999999988743    345678889999999


Q ss_pred             cccccceeecCCC----C-CCCCCCCEEeCCCCccccc----CccchhhhccCCeeEeeeeeee
Q 035895          290 LGHNRLQGSIPNS----F-DDLVSLESLDLSNNNLSEI----IPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       290 L~~N~l~~~~p~~----~-~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ++++.+...-...    | ...++|++|.|.+|.++..    +...+...+.|..|+++.+-++
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999887432211    1 2468999999999999753    2334455677777877776664

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.81  E-value=3.3e-08  Score=86.89  Aligned_cols=103  Identities=24%  Similarity=0.361  Sum_probs=78.7

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEee-------------------------------------ccCccceeEEEEEe
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHF-------------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~-------------------------------------~~~~~~~~~lv~ey  433 (527)
                      ..+++|+=+.+|.+.+. |.++.+|.-..                                     ...+.+...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            46789999999998764 33466664210                                     01123445699999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ++|..|.+.+...        +..++..|...++-||   ..+|||+|+.++||++..+. +.+.|||++..-
T Consensus        81 I~G~~lkd~l~~~--------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          81 IEGELLKDALEEA--------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             eCChhHHHHHHhc--------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            9999998888543        3557788888899999   99999999999999998764 999999999854

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.71  E-value=8.6e-09  Score=94.70  Aligned_cols=110  Identities=19%  Similarity=0.387  Sum_probs=85.5

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEEee-------------------------------ccCccceeEEEEEecc
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-------------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .....+|.+...|+.|+|+++.. .+++|++..                               .|.......++..||+
T Consensus       192 lnl~tkl~e~hsgelwrgrwqgn-divakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp  270 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWRGRWQGN-DIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMP  270 (448)
T ss_pred             hhhhhhhccCCCcccccccccCc-chhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeecc
Confidence            44567889999999999999754 344444321                               2444556678999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                      .|+|+.+++... ...+..+++++|.++|+|++|||.. .+-|..-.+.+..+++|++.+++|+
T Consensus       271 ~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltaris  333 (448)
T KOG0195|consen  271 FGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARIS  333 (448)
T ss_pred             chHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhhee
Confidence            999999998654 3468889999999999999999943 4445566899999999999988874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.70  E-value=2.9e-09  Score=114.71  Aligned_cols=113  Identities=24%  Similarity=0.280  Sum_probs=91.1

Q ss_pred             CccccceeccCCceEEEEEEccCCcEEEEEEEeecc--------------------------------CccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC--------------------------------SNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~--------------------------------~~~~~~~lv~ey  433 (527)
                      +|...+.+|.+.|=+|.+|+.+.|. |+||++-...                                ..+...|+|-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            5777899999999999999999997 8899873210                                012233566677


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +.. +|++.+.. +..+...+..-|+-|+..|+.-+|   ..+|+|+|||.+|||++.-.=+.++||.--+
T Consensus       103 vkh-nLyDRlST-RPFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFK  168 (1431)
T KOG1240|consen  103 VKH-NLYDRLST-RPFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFK  168 (1431)
T ss_pred             Hhh-hhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccC
Confidence            754 88888753 345677777889999999999999   9999999999999999998889999997544

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.65  E-value=2.4e-08  Score=96.60  Aligned_cols=73  Identities=27%  Similarity=0.353  Sum_probs=56.6

Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee--CCCC--cEEEeecc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL--DDNI--VAHLSDFG  501 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill--~~~~--~~kl~Dfg  501 (527)
                      ..|+||.-.+. +|+.++....  .+...+.-+..|+.+|+.|||   +++|.|||+|++|||+  |+|+  ...|+|||
T Consensus       317 tlylvMkrY~~-tLr~yl~~~~--~s~r~~~~~laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFG  390 (598)
T KOG4158|consen  317 TLYLVMKRYRQ-TLREYLWTRH--RSYRTGRVILAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFG  390 (598)
T ss_pred             eEEEehhcchh-hHHHHHhcCC--CchHHHHHHHHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccc
Confidence            34678877664 8888886543  333345557889999999999   9999999999999999  4444  56799999


Q ss_pred             ccc
Q 035895          502 IAK  504 (527)
Q Consensus       502 ~a~  504 (527)
                      .+-
T Consensus       391 CcL  393 (598)
T KOG4158|consen  391 CCL  393 (598)
T ss_pred             eee
Confidence            875

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=5e-09  Score=105.14  Aligned_cols=97  Identities=25%  Similarity=0.419  Sum_probs=79.5

Q ss_pred             ceeEEEEEeccCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI  502 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~  502 (527)
                      .+.+|.|++|...+|.+++...  ....++...+.++.|++.|++|      ++.+|||+||.||....+..+||.|||+
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl  402 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGL  402 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhh
Confidence            3568999999999999999643  3346777788899999999998      6789999999999999998999999999


Q ss_pred             ccccCCCC----CccceeccccccccccC
Q 035895          503 AKLLTGED----QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~----~~~~~~~~~~t~~y~aP  527 (527)
                      ........    .....++.+||.+||+|
T Consensus       403 ~ts~~~~~~~~~~~a~~t~~~gt~~YmsP  431 (516)
T KOG1033|consen  403 VTSQDKDETVAPAAASHTQQVGTLLYMSP  431 (516)
T ss_pred             eeecccCCcccchhhhhhhcccccccCCH
Confidence            87765433    12234566799999998

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.64  E-value=2.1e-07  Score=87.33  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeec--------------------------------cCcc---ceeEEEEEecc
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------------CSNE---DFRALVLEYTT  435 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~--------------------------------~~~~---~~~~lv~ey~~  435 (527)
                      +.|+.|.++.||+++..+|+.+++|.....                                ....   +..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            578999999999999877788999975321                                0111   24579999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-------------------------------------------
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-------------------------------------------  472 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-------------------------------------------  472 (527)
                      |+++.+.+..  ..++..+...++.++++++.++|..                                           
T Consensus        84 G~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (223)
T cd05154          84 GRVLRDRLLR--PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLL  161 (223)
T ss_pred             CEecCCCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            9888765421  2345666677778888888888731                                           


Q ss_pred             ----------CCCCeEecCCCCCCeeeCC--CCcEEEeeccccccc
Q 035895          473 ----------YSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLL  506 (527)
Q Consensus       473 ----------~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~  506 (527)
                                ....+||+|++|.||+++.  ++.+.+.||+.+..-
T Consensus       162 ~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         162 RWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             HHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                      1356799999999999998  667899999998753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=1.6e-08  Score=111.93  Aligned_cols=261  Identities=23%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCC--CCcccChhHhhccccccEEEcccCccccccchhhcCCc
Q 035895           63 IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNP--LDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT  140 (527)
Q Consensus        63 ~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  140 (527)
                      ..+...+-+|.+..+...       ..++.|++|-+..|.  +....++.|..+ +.|++|||++|.=-+.+|..++.+-
T Consensus       524 ~~rr~s~~~~~~~~~~~~-------~~~~~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGS-------SENPKLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             heeEEEEeccchhhccCC-------CCCCccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhh
Confidence            356667777766654332       344578888888885  443333334444 4788888888776667888888888


Q ss_pred             CCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC--CCCCccccCCccCceee
Q 035895          141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS--GSIPTCFGNLTALRNLH  218 (527)
Q Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~  218 (527)
                      +|++|++++..++ .+|..+++|++|.+|++..+.-...+|.....+.+|++|.+-.-...  ...-..+.++.+|+.+.
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            8888888888887 56777888888888888877655455777777888888877654321  11222334455555555


Q ss_pred             CCCCCCCCCchhhhCCCCcc----EEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhc------CCCCCEE
Q 035895          219 LDSNELTSIPSILWNLKDIL----YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQG------LKSLQFL  288 (527)
Q Consensus       219 L~~N~l~~lp~~~~~l~~L~----~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L  288 (527)
                      ...... .+-..+..+..|.    .+.+.. ......+..+..+.+|+.|.+.++.+..........      ++++..+
T Consensus       675 ~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  675 ITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             eecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            533332 1111111111111    111111 111234456677788888888877775322222111      1122222


Q ss_pred             EcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCe
Q 035895          289 SLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI  335 (527)
Q Consensus       289 ~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  335 (527)
                      ...++... ..+.+..-.++|+.|.+..+...+.+....+.+..+..
T Consensus       753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence            22222111 12222234578888888888766666666666655554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=2.8e-08  Score=109.94  Aligned_cols=203  Identities=19%  Similarity=0.245  Sum_probs=126.6

Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCc--cccccchhhcCCcCCcEEEeecCcccccCcccccCCCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN--ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK  165 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  165 (527)
                      .+....+...+-+|.+.. ++.....  +.|+.|-+..|.  +..+..+.|..++.|++|||++|.--+.+|..++.|-+
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~~~~--~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGSSEN--PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCCCCC--CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344567777777777653 2333222  257788888875  55555666778888888888887766678888888888


Q ss_pred             CCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCc---hhhhCCCCccEEEc
Q 035895          166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP---SILWNLKDILYLDF  242 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp---~~~~~l~~L~~l~l  242 (527)
                      |++|++++..++ .+|..+.++..|.+|++..+.-...+|.....|++|++|.+.......-.   ..+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            888888888887 77888888888888888887766666777777888888888776532211   22334444444443


Q ss_pred             cCCcccccCCccccCCCCCC----EEEccCCCCCCCChhhhhcCCCCCEEEccccccee
Q 035895          243 WSNLFVGPLPSKIGNLKVLT----RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       243 ~~n~~~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (527)
                      .....  .+-..+..++.|.    .+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            22211  0001112222222    2222222222 345567777888888888877753

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.61  E-value=4.7e-07  Score=79.36  Aligned_cols=113  Identities=21%  Similarity=0.250  Sum_probs=80.6

Q ss_pred             ccceeccCCceEEEEEEccCCcEEEEEEEe-e------------------------------------ccCccceeEEEE
Q 035895          389 ANNLIGRGSFGSVYKARLQDGMEFAIKVFH-F------------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~~~~~~vavK~~~-~------------------------------------~~~~~~~~~lv~  431 (527)
                      ....+-+|+=+.|+++.+. |+...||.-. .                                    ...+...-.++|
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            5678899999999999875 5666666410 0                                    001122335899


Q ss_pred             EeccC-CcHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccccc
Q 035895          432 EYTTN-GSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN---IVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~-g~L~~~l~~~~~~-~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~Dfg~a~~  505 (527)
                      ||++| .++.+++...-.. .+......++..|.+.++-||   ..+|||+||..+||++..+   ..+.+.|||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence            99987 4778877654222 222223578899999999999   9999999999999999644   3458999999864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=2.1e-09  Score=110.82  Aligned_cols=180  Identities=27%  Similarity=0.286  Sum_probs=114.2

Q ss_pred             ChhHhhccccccEEEcccCccccccchhhcCC-cCCcEEEeecCcccc---cCc---cccc---CCCCCCEEeccCcccc
Q 035895          108 PRVVGNFSQSLEFIWMSDCNISGGISEEIGNL-TDLISIDLGGNKLNG---SIS---ITLG---KLQKLQFLSFRGNELE  177 (527)
Q Consensus       108 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~---~~~---~~~~---~l~~L~~L~l~~N~l~  177 (527)
                      |-.+..+. +|++|.|+++.|..  ...+..+ ..|++|-. +|.+..   ++.   ..+.   ..-.|..-+.++|.+.
T Consensus       102 pi~ifpF~-sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFR-SLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             Cceecccc-ceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            33444443 78888888888864  1111111 12333322 222210   000   0111   1235677788888887


Q ss_pred             cccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccC
Q 035895          178 GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGN  257 (527)
Q Consensus       178 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~  257 (527)
                       ....++.-++.|+.|+|++|+++...  .+..++.|++|||++|.++.+|..-..-..|..|.+.+|.++..  ..+.+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh--hhHHh
Confidence             56667888888889999999887543  67888889999999999888886332223477788888877643  33567


Q ss_pred             CCCCCEEEccCCCCCCCCh-hhhhcCCCCCEEEcccccce
Q 035895          258 LKVLTRIDFSRNNLLGDIP-TTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       258 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~  296 (527)
                      |++|+.||+++|-+++.-. ..+..|..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888888888888765322 22456677888888888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.58  E-value=5.4e-09  Score=86.46  Aligned_cols=112  Identities=24%  Similarity=0.261  Sum_probs=70.2

Q ss_pred             ccEEEcccCcccccc--chhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeee
Q 035895          118 LEFIWMSDCNISGGI--SEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL  195 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L  195 (527)
                      +..++|++|.+-.+.  +..+.....|+..+|++|.+...++..-...+.++.|++++|+|+ .+|..+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            555666666554211  222334455666777777776544433344556777777777776 56666777777777777


Q ss_pred             ecccCCCCCCccccCCccCceeeCCCCCCCCCchhh
Q 035895          196 RGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSIL  231 (527)
Q Consensus       196 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~  231 (527)
                      +.|.+. ..|..+..|.+|-.|+..+|.+..+|-.+
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence            777776 45555666777777777777777766543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.55  E-value=1.1e-07  Score=97.34  Aligned_cols=85  Identities=34%  Similarity=0.559  Sum_probs=75.6

Q ss_pred             ccCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCe-EecCCCCCCeeeCCCCcEEEe
Q 035895          420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI-IHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       420 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~i-iHrdlk~~nill~~~~~~kl~  498 (527)
                      .+......+.|.+||..|+|.+.+......+++.-...++.+|+.|++|+|   ..+| .|+.+++.|+++|....+|++
T Consensus        15 ~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh---~s~i~~hg~l~s~nClvd~~w~lklt   91 (484)
T KOG1023|consen   15 ASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLH---NSPIGYHGALKSSNCLVDSRWVLKLT   91 (484)
T ss_pred             eEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHh---cCcceeeeeeccccceeeeeEEEEec
Confidence            344456778999999999999999887778899989999999999999999   5555 999999999999999999999


Q ss_pred             ecccccccC
Q 035895          499 DFGIAKLLT  507 (527)
Q Consensus       499 Dfg~a~~~~  507 (527)
                      |||+.....
T Consensus        92 ~~Gl~~~~~  100 (484)
T KOG1023|consen   92 DFGLNSLLE  100 (484)
T ss_pred             hhhhccccc
Confidence            999988763

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.49  E-value=4.1e-07  Score=82.39  Aligned_cols=73  Identities=26%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             EEEEEecc--CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          428 ALVLEYTT--NGSLEKVLYSSNYILDILQRLNIMIDVTSALEY-LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       428 ~lv~ey~~--~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~y-lH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ++||||++  |..+..+....   ++......++.++...+.. +|   ..+|||+|+.+.||+++++ .+.++|||-|.
T Consensus        82 ~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~~iIDf~qav  154 (188)
T PF01163_consen   82 VIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KVYIIDFGQAV  154 (188)
T ss_dssp             EEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CEEE--GTTEE
T ss_pred             EEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eEEEEecCcce
Confidence            48999999  65554433221   1122344566777775555 57   8999999999999999987 99999999887


Q ss_pred             ccC
Q 035895          505 LLT  507 (527)
Q Consensus       505 ~~~  507 (527)
                      ...
T Consensus       155 ~~~  157 (188)
T PF01163_consen  155 DSS  157 (188)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.47  E-value=3.8e-07  Score=94.88  Aligned_cols=113  Identities=24%  Similarity=0.247  Sum_probs=81.5

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeecc-------------------------------------------------
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-------------------------------------------------  421 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-------------------------------------------------  421 (527)
                      +.|+.++-|+||+|++++|+.||||+.+...                                                 
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            6899999999999999999999999964210                                                 


Q ss_pred             -------------------------CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 035895          422 -------------------------SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP  476 (527)
Q Consensus       422 -------------------------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~  476 (527)
                                               .-.....++|||++|-.+.+...-.....+.   ..++..++++  |+-+....+
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~---k~ia~~~~~~--f~~q~~~dg  285 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDR---KELAELLVRA--FLRQLLRDG  285 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCH---HHHHHHHHHH--HHHHHHhcC
Confidence                                     0012335899999999998874333233442   2233333322  221112568


Q ss_pred             eEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       477 iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ++|.|..|-||+++.+|++-.-|||+...+++
T Consensus       286 ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         286 FFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             ccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            99999999999999999999999999887754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=3.2e-09  Score=109.54  Aligned_cols=178  Identities=23%  Similarity=0.231  Sum_probs=99.6

Q ss_pred             cCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccc---cccchh---hc---CCcCCcEEEeecCcccccC
Q 035895           86 SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNIS---GGISEE---IG---NLTDLISIDLGGNKLNGSI  156 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~---~~---~l~~L~~L~L~~N~l~~~~  156 (527)
                      ++..++.|++|.|.++.+...  ..+..+...|+.|.- +|.++   .++...   +.   ....|.+.+.+.|.+. .+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence            345678899999999988642  222223334555432 22221   001000   00   1124666677777765 45


Q ss_pred             cccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCc-cccCCccCceeeCCCCCCCCCchhhhCCC
Q 035895          157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLK  235 (527)
Q Consensus       157 ~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~  235 (527)
                      +.++.-++.|+.|+|++|++...  ..+..++.|++|||+.|.+.. +|. ....+ .|+.|.+++|.++++- .+.+++
T Consensus       180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNALTTLR-GIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHHHhhh-hHHhhh
Confidence            56666667777777777776633  256666777777777777763 333 22223 3777777777766652 345666


Q ss_pred             CccEEEccCCcccccC-CccccCCCCCCEEEccCCCCC
Q 035895          236 DILYLDFWSNLFVGPL-PSKIGNLKVLTRIDFSRNNLL  272 (527)
Q Consensus       236 ~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~Ls~N~l~  272 (527)
                      +|+.||++.|-+.+.- -..++.|..|+.|.|.+|.+-
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777776554321 112344556666777776653

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.38  E-value=1.3e-06  Score=81.60  Aligned_cols=110  Identities=23%  Similarity=0.257  Sum_probs=78.8

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEeec-----------------------------c----------C------
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-----------------------------C----------S------  422 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-----------------------------~----------~------  422 (527)
                      .+...||.|.=|.||.|..+.|.++|||.-+..                             +          .      
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            456899999999999999999999999963210                             0          0      


Q ss_pred             ----ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          423 ----NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       423 ----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                          .-+..++||||++|-.|+..=      ++....-.+...|.+-+.-+-   ..||||+|+.+-||+++++|.+.+.
T Consensus       174 P~P~~~nRHaVvMe~ieG~eL~~~r------~~~en~~~il~~il~~~~~~~---~~GiVHGDlSefNIlV~~dg~~~vI  244 (304)
T COG0478         174 PKPIAWNRHAVVMEYIEGVELYRLR------LDVENPDEILDKILEEVRKAY---RRGIVHGDLSEFNILVTEDGDIVVI  244 (304)
T ss_pred             CCccccccceeeeehcccceeeccc------CcccCHHHHHHHHHHHHHHHH---HcCccccCCchheEEEecCCCEEEE
Confidence                012346999999997776431      122223334444444444444   6789999999999999999999999


Q ss_pred             eccccccc
Q 035895          499 DFGIAKLL  506 (527)
Q Consensus       499 Dfg~a~~~  506 (527)
                      ||-=+...
T Consensus       245 DwPQ~v~~  252 (304)
T COG0478         245 DWPQAVPI  252 (304)
T ss_pred             eCcccccC
Confidence            99766544

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=9e-08  Score=102.25  Aligned_cols=141  Identities=26%  Similarity=0.320  Sum_probs=101.5

Q ss_pred             CCccccceeccCCceEEEEEEccC--CcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD--GMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~--~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      ..|...+.||+|+|+.|-.+....  ...+|+|.+..                                .....+..+++
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~   99 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLS   99 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccc
Confidence            446777889999999997765432  23344443211                                01123456789


Q ss_pred             EEeccCCcHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCC
Q 035895          431 LEYTTNGSLEKVL-YSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTG  508 (527)
Q Consensus       431 ~ey~~~g~L~~~l-~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~  508 (527)
                      +||..||++...+ .......+......+..|+..++.|+|.  ..++.|||+||+|.+++..+ ..+++|||+|..+..
T Consensus       100 ~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  100 LSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             cCcccccccccccccCCccCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            9999999999888 4332134444566788999999999994  67899999999999999998 999999999988765


Q ss_pred             -CCCccceecccc-ccccccC
Q 035895          509 -EDQSMTQTQTLA-IIGYMAP  527 (527)
Q Consensus       509 -~~~~~~~~~~~~-t~~y~aP  527 (527)
                       ..........+| ++.|+||
T Consensus       178 ~~g~~~~~~~~~g~s~~y~a~  198 (601)
T KOG0590|consen  178 KNGAERSLKDRCGSSPPYGAP  198 (601)
T ss_pred             cCCcceeeecccCCCCCCCCc
Confidence             332233334567 8889997

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.33  E-value=3.4e-06  Score=78.31  Aligned_cols=79  Identities=25%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             ceeEEEEEeccCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEEeec
Q 035895          425 DFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHLSDF  500 (527)
Q Consensus       425 ~~~~lv~ey~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~Df  500 (527)
                      ...++|||++++. +|.+++..... .+......++.++++.++-||   ..+|+|+|+++.|||++.+.   .+.+.||
T Consensus        90 ~~s~lite~l~~~~~L~~~~~~~~~-~~~~~~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDl  165 (206)
T PF06293_consen   90 YRSYLITEALPGAQDLRDLLQQWEQ-LDPSQRRELLRALARLIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDL  165 (206)
T ss_pred             eeEEEEEEeCCCcccHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcc
Confidence            4557999999984 89998865322 455567789999999999999   99999999999999998776   8899999


Q ss_pred             ccccccC
Q 035895          501 GIAKLLT  507 (527)
Q Consensus       501 g~a~~~~  507 (527)
                      +-++...
T Consensus       166 d~~~~~~  172 (206)
T PF06293_consen  166 DRMRFRP  172 (206)
T ss_pred             hhceeCC
Confidence            9887643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.30  E-value=2e-06  Score=82.63  Aligned_cols=77  Identities=18%  Similarity=0.104  Sum_probs=63.0

Q ss_pred             eeEEEEEeccCC-cHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-------CCcEE
Q 035895          426 FRALVLEYTTNG-SLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-------NIVAH  496 (527)
Q Consensus       426 ~~~lv~ey~~~g-~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-------~~~~k  496 (527)
                      ..++|||++++. +|.+++... ....+......++.+++..+.-||   ..+|+|+|+++.|||++.       +..+.
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~  185 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDLKLS  185 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCceEE
Confidence            467999999986 899887532 223345566688999999999999   999999999999999975       47899


Q ss_pred             Eeecccccc
Q 035895          497 LSDFGIAKL  505 (527)
Q Consensus       497 l~Dfg~a~~  505 (527)
                      ++||+.++.
T Consensus       186 LIDl~r~~~  194 (268)
T PRK15123        186 VIDLHRAQI  194 (268)
T ss_pred             EEECCcccc
Confidence            999998854

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.28  E-value=3e-06  Score=88.03  Aligned_cols=113  Identities=25%  Similarity=0.323  Sum_probs=79.9

Q ss_pred             ceeccCCceEEEEEEccCCcEEEEEEEeecc-------------------------------------------------
Q 035895          391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-------------------------------------------------  421 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-------------------------------------------------  421 (527)
                      +.||.-+.|.||+|++++|+.||||+-|...                                                 
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            6899999999999999999999999854200                                                 


Q ss_pred             -------------------------CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 035895          422 -------------------------SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP  476 (527)
Q Consensus       422 -------------------------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~  476 (527)
                                               .-...+.++||||+|..+.+.-.-.+...+..   .++..+.++  |++.....|
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~---~i~~~l~~~--~~~qIf~~G  321 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPH---DILNKLVEA--YLEQIFKTG  321 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHH---HHHHHHHHH--HHHHHHhcC
Confidence                                     00113459999999988776533222334443   333333333  333223678


Q ss_pred             eEecCCCCCCeeeCC----CCcEEEeecccccccCC
Q 035895          477 IIHCDLKPHNKLLDD----NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       477 iiHrdlk~~nill~~----~~~~kl~Dfg~a~~~~~  508 (527)
                      ++|.|=.|-||++..    ++++.+-|||+.+.++.
T Consensus       322 ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  322 FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             CccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            999999999999983    67899999999887653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=5.4e-08  Score=80.61  Aligned_cols=106  Identities=25%  Similarity=0.306  Sum_probs=70.2

Q ss_pred             cCCcEEEeecCccccc--CcccccCCCCCCEEeccCcccccccChhhhc-CcccCeeeeecccCCCCCCccccCCccCce
Q 035895          140 TDLISIDLGGNKLNGS--ISITLGKLQKLQFLSFRGNELEGSIPNVLCH-LAVLFQLDLRGNKLSGSIPTCFGNLTALRN  216 (527)
Q Consensus       140 ~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  216 (527)
                      ..+..+||+.+++..+  .+..+.+...|+..+|++|.+. .+|+.|.. .+.++.|+|++|.|+ .+|..+..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3466777777776521  1223445566667788888887 45555543 457778888888887 46666888888888


Q ss_pred             eeCCCCCCCCCchhhhCCCCccEEEccCCcc
Q 035895          217 LHLDSNELTSIPSILWNLKDILYLDFWSNLF  247 (527)
Q Consensus       217 L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~  247 (527)
                      |+++.|.+...|..+..+.++-+|+..+|.+
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            8888888877777666666665555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1.2e-06  Score=81.93  Aligned_cols=187  Identities=21%  Similarity=0.248  Sum_probs=85.2

Q ss_pred             ccccEEEcccCcccc--ccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCccccc-ccChhhhcCcccCe
Q 035895          116 QSLEFIWMSDCNISG--GISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG-SIPNVLCHLAVLFQ  192 (527)
Q Consensus       116 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~  192 (527)
                      +.++.+||.+|.|+.  .+...+.+||.|++|+|+.|.+...+...-..+.+|+.|-|.+..+.- .....+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            345555555555542  223334556666666666666654332221344556666665555431 11223344555555


Q ss_pred             eeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCC---CCccEEEccCCcccccCCccccCCCCCCEEEccCC
Q 035895          193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNL---KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRN  269 (527)
Q Consensus       193 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l---~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N  269 (527)
                      |.+|.|.+.              .++++.|.+....+....+   +.+..+-.+-|++..       -.+++..+.+..|
T Consensus       151 lHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-------~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  151 LHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-------IFPNVNSVFVCEG  209 (418)
T ss_pred             hhhccchhh--------------hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-------hcccchheeeecC
Confidence            555554322              1222222222211111000   000011111111111       1234455555555


Q ss_pred             CCCCC-ChhhhhcCCCCCEEEccccccee-ecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          270 NLLGD-IPTTIQGLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       270 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      .+... ....+..++.+.-|+|+.|+|.. ..-+.+.++++|..|.+++|++.+..
T Consensus       210 PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  210 PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            44322 12344555666677777777642 12235566777778888888776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=5.6e-07  Score=84.15  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=37.9

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccc-cchhhcCCcCC
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG-ISEEIGNLTDL  142 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  142 (527)
                      ++++||..|.|+.-....   .-+.++|.|++|+|+.|++...+....... .+|++|-|.+..+.-. ....+..+|.+
T Consensus        73 v~elDL~~N~iSdWseI~---~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIG---AILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhcccchhccHHHHH---HHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            455666666665321110   113455666666666666553322111111 2455555555544311 12333445555


Q ss_pred             cEEEeecC
Q 035895          143 ISIDLGGN  150 (527)
Q Consensus       143 ~~L~L~~N  150 (527)
                      ++|+++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=3e-07  Score=85.97  Aligned_cols=221  Identities=19%  Similarity=0.252  Sum_probs=128.7

Q ss_pred             CCCEEEcccCCCCcccChhHhhcc-ccccEEEcccCccccc-cchhhcC-CcCCcEEEeecCcccc-cCcccccCCCCCC
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFS-QSLEFIWMSDCNISGG-ISEEIGN-LTDLISIDLGGNKLNG-SISITLGKLQKLQ  167 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~-~~~~~~~-l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  167 (527)
                      .-+.||+.+-.|.   |.+...+. +...++.+.+--+... +.+.+.. -+.|++|||++..|+. .+-..+..+.+|+
T Consensus       137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk  213 (419)
T KOG2120|consen  137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK  213 (419)
T ss_pred             ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence            3467788776664   44444332 2344455543333321 1222222 2358888888888763 2233455678888


Q ss_pred             EEeccCcccccccChhhhcCcccCeeeeeccc-CCCC-CCccccCCccCceeeCCCCCCCC--CchhhhC-CCCccEEEc
Q 035895          168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK-LSGS-IPTCFGNLTALRNLHLDSNELTS--IPSILWN-LKDILYLDF  242 (527)
Q Consensus       168 ~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~L~L~~N~l~~--lp~~~~~-l~~L~~l~l  242 (527)
                      .|.+.++++...+-..+..-..|+.|+++.+. ++.. ..--|.+++.|..|+++.+.+..  +...+.. -.+|..|++
T Consensus       214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl  293 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL  293 (419)
T ss_pred             hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence            88888888887777777777888888888753 2211 01125678888888888887764  2222222 234566666


Q ss_pred             cCCccc---ccCCccccCCCCCCEEEccCCCCC-CCChhhhhcCCCCCEEEcccccceeecCCC---CCCCCCCCEEeCC
Q 035895          243 WSNLFV---GPLPSKIGNLKVLTRIDFSRNNLL-GDIPTTIQGLKSLQFLSLGHNRLQGSIPNS---FDDLVSLESLDLS  315 (527)
Q Consensus       243 ~~n~~~---~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~ls  315 (527)
                      ++..-.   ..+..-...+++|.+||||+|... ...-..|..++.|++|.++.+..  .+|..   |...++|.+||+-
T Consensus       294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence            654321   111122345678888888876532 22233466777788888777764  45553   4556777777765


Q ss_pred             CC
Q 035895          316 NN  317 (527)
Q Consensus       316 ~N  317 (527)
                      +.
T Consensus       372 g~  373 (419)
T KOG2120|consen  372 GC  373 (419)
T ss_pred             cc
Confidence            43

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=4.3e-06  Score=56.15  Aligned_cols=39  Identities=33%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             ccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCc
Q 035895          189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP  228 (527)
Q Consensus       189 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp  228 (527)
                      +|++|++++|+|+. +|..+++|++|++|++++|+++.+|
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence            45555555555553 3334555555555555555555443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=2.3e-05  Score=78.60  Aligned_cols=119  Identities=17%  Similarity=0.306  Sum_probs=65.3

Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecC-cccccCcccccCCCCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGN-KLNGSISITLGKLQKL  166 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  166 (527)
                      ..+++++.|++++|.++.+ |    .++.+|+.|.+++|.--..+|+.+.  ++|++|++++| .+. .+|      .+|
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence            3457788888888877753 4    2455788888877544345555442  46777888777 443 233      246


Q ss_pred             CEEeccCcccc--cccChhhhcCcccCeeeeeccc-CCC-CCCccccCC-ccCceeeCCCCCCCCCch
Q 035895          167 QFLSFRGNELE--GSIPNVLCHLAVLFQLDLRGNK-LSG-SIPTCFGNL-TALRNLHLDSNELTSIPS  229 (527)
Q Consensus       167 ~~L~l~~N~l~--~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l-~~L~~L~L~~N~l~~lp~  229 (527)
                      +.|+++.+...  +.+|.      +|+.|.+.+++ ... ..|.   .+ ++|++|++++|....+|.
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~  173 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPE  173 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCcc
Confidence            66666655432  12333      34455553322 110 0111   12 467777777766555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.96  E-value=1.9e-05  Score=70.20  Aligned_cols=121  Identities=21%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             CCEEEcccccc-----ccccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccE
Q 035895           46 LKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF  120 (527)
Q Consensus        46 L~~L~Ls~N~~-----~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  120 (527)
                      -+.+||-+.++     .|..-..++.+||++|.+..+       +.|..++.|.+|.|++|.|+.+-|. +..+.++|+.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-------~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~   92 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-------DNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKT   92 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-------ccCCCccccceEEecCCcceeeccc-hhhhccccce
Confidence            45555555543     233334567888999987654       2467888899999999999876554 4445567888


Q ss_pred             EEcccCcccccc-chhhcCCcCCcEEEeecCcccccC---cccccCCCCCCEEeccCc
Q 035895          121 IWMSDCNISGGI-SEEIGNLTDLISIDLGGNKLNGSI---SITLGKLQKLQFLSFRGN  174 (527)
Q Consensus       121 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N  174 (527)
                      |.|.+|+|...- -.-+..++.|++|.+-+|.++..-   -..+..+++|+.||++.-
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            888888887321 233566777888888777776322   123556777777777643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=4.5e-06  Score=56.04  Aligned_cols=36  Identities=31%  Similarity=0.582  Sum_probs=17.6

Q ss_pred             CCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       260 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555554 23444555555555555555554

...

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.92  E-value=5e-06  Score=85.41  Aligned_cols=119  Identities=28%  Similarity=0.381  Sum_probs=93.2

Q ss_pred             hcCCccccceeccCCceEEEEEEcc--CCcEEEEEEEee--------------------------------ccCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ--DGMEFAIKVFHF--------------------------------SCSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~--~~~~vavK~~~~--------------------------------~~~~~~~~~  428 (527)
                      ...+|.....||.|.|+.||....+  ++..+++|.+..                                .....+..+
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~  342 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGY  342 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccccc
Confidence            4567888999999999999998754  577888885421                                111223456


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKL  505 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~  505 (527)
                      +--|||++++.+..+. -...++...++.+..+++.++.++|   ++.++|+|+||+||++..+ +..+++|||.+..
T Consensus       343 ip~e~~~~~s~~l~~~-~~~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  343 IPLEFCEGGSSSLRSV-TSQMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             CchhhhcCcchhhhhH-HHHhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeeccchhhhhccccccccc
Confidence            7889999998876552 2234677778888999999999999   9999999999999999875 7888999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	527
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-20
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		2e-17
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		5e-17
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-06
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		3e-14
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-10
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		8e-10
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-09
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-09
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-09
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-09
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		4e-09
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-09
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		5e-09
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		5e-09
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		5e-09
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		6e-09
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		6e-09
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-09
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		6e-09
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		6e-09
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		6e-09
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-09
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		6e-09
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		6e-09
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-09
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		6e-09
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		7e-09
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		8e-09
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		1e-08
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-08
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		7e-07
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-06
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-06
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		4e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-06
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-06
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		6e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		6e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		7e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		7e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		7e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		7e-06
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		8e-06
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-05
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-05
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-05
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-05
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		3e-05
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-05
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-05
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		4e-05
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		4e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		4e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		5e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		6e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		6e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		6e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		6e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		6e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		7e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		7e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		7e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		7e-05
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		7e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		7e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		7e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		8e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		8e-05
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		8e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		8e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		8e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		8e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		8e-05
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		8e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		8e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		8e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		8e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		8e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		8e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		8e-05
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		8e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		9e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		9e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		9e-05
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		9e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		9e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		9e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		9e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		9e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-04
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		1e-04
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		1e-04
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		1e-04
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-04
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		1e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		2e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-04
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		2e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		2e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-04
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		2e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		3e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		4e-04
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		4e-04
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		4e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		5e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		6e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		6e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		6e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		6e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		7e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		7e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		7e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		7e-04
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		7e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		7e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		7e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		7e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		7e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		7e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		7e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		7e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		7e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		7e-04
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		7e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		7e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		7e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		8e-04
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		8e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		8e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		8e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-04
3a7f_A	303	Human Mst3 Kinase Length = 303		8e-04
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		8e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		8e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		9e-04
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		9e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 152/338 (44%), Gaps = 61/338 (18%)
Query: 20  CYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI----VDELSLSDNYL 74
           C  +  +D S NKL G  S  I   + LK+ ++ +N  +G +  +    +  LSL++N  
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 278
Query: 75  TSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVG-------------NFS------ 115
           T   P+  FLS    C  L  LD+S N   G +P   G             NFS      
Sbjct: 279 TGEIPD--FLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 116 -----QSLEFIWMSDCNISGGISEEIGNLT-DLISIDLGGNKLNGSISITLGKLQK--LQ 167
                + L+ + +S    SG + E + NL+  L+++DL  N  +G I   L +  K  LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHL-------- 219
            L  + N   G IP  L + + L  L L  N LSG+IP+  G+L+ LR+L L        
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 220 ----------------DSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
                           D N+LT  IPS L N  ++ ++   +N   G +P  IG L+ L 
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
            +  S N+  G+IP  +   +SL +L L  N   G+IP
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 152/338 (44%), Gaps = 61/338 (18%)
Query: 20  CYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI----VDELSLSDNYL 74
           C  +  +D S NKL G  S  I   + LK+ ++ +N  +G +  +    +  LSL++N  
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281
Query: 75  TSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVG-------------NFS------ 115
           T   P+  FLS    C  L  LD+S N   G +P   G             NFS      
Sbjct: 282 TGEIPD--FLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 116 -----QSLEFIWMSDCNISGGISEEIGNLT-DLISIDLGGNKLNGSISITLGKLQK--LQ 167
                + L+ + +S    SG + E + NL+  L+++DL  N  +G I   L +  K  LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHL-------- 219
            L  + N   G IP  L + + L  L L  N LSG+IP+  G+L+ LR+L L        
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 220 ----------------DSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
                           D N+LT  IPS L N  ++ ++   +N   G +P  IG L+ L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
            +  S N+  G+IP  +   +SL +L L  N   G+IP
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 81/188 (43%), Gaps = 34/188 (18%)
Query: 373 RRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------ 420
           +RFS +EL  A+D FS  N++GRG FG VYK RL DG   A+K                 
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 421 ------------------CSNEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIM 459
                             C     R LV  Y  NGS+   L     S   LD  +R  I 
Sbjct: 86  VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 145
Query: 460 IDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
           +     L YLH      IIH D+K  N LLD+   A + DFG+AKL+  +D  +      
Sbjct: 146 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA-VR 204
Query: 520 AIIGYMAP 527
             IG++AP
Sbjct: 205 GTIGHIAP 212

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 373 RRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------ 420
           +RFS +EL  A+D F   N++GRG FG VYK RL DG   A+K                 
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 421 ------------------CSNEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIM 459
                             C     R LV  Y  NGS+   L     S   LD  +R  I 
Sbjct: 78  VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 137
Query: 460 IDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
           +     L YLH      IIH D+K  N LLD+   A + DFG+AKL+  +D  +      
Sbjct: 138 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA-VR 196
Query: 520 AIIGYMAP 527
             IG++AP
Sbjct: 197 GXIGHIAP 204

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 374 RFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIK------------------ 415
           R    +L  AT+ F    LIG G FG VYK  L+DG + A+K                  
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 416 VFHFS-----------CSNEDFRALVLEYTTNGSLEKVLYSSN---YILDILQRLNIMID 461
              F            C   +   L+ +Y  NG+L++ LY S+     +   QRL I I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
               L YLH   +  IIH D+K  N LLD+N V  ++DFGI+K  T  DQ+         
Sbjct: 148 AARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGT 204
Query: 522 IGYMAP 527
           +GY+ P
Sbjct: 205 LGYIDP 210

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 85  SSMSNCKYLKKLDISR-NPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI 143
           SS++N  YL  L I   N L G +P  +   +Q L +++++  N+SG I + +  +  L+
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF-QLDLRGNKLSG 202
           ++D   N L+G++  ++  L  L  ++F GN + G+IP+     + LF  + +  N+L+G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 203 SIPTCFGNLTALRNLHLDSNELTSIPSILWNL------------------------KDIL 238
            IP  F NL  L  + L  N L    S+L+                          K++ 
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
            LD  +N   G LP  +  LK L  ++ S NNL G+IP
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 193 LDLRGNKLSGS--IPTCFGNLTALRNLHLD--SNELTSIPSILWNLKDILYLDFWSNLFV 248
           LDL G  L     IP+   NL  L  L++   +N +  IP  +  L  + YL        
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
           G +P  +  +K L  +DFS N L G +P +I  L +L  ++   NR+ G+IP+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 81/186 (43%), Gaps = 35/186 (18%)
Query: 374 RFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIK------------------ 415
           R    +L  AT+ F    LIG G FG VYK  L+DG + A+K                  
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 416 VFHFS-----------CSNEDFRALVLEYTTNGSLEKVLYSSN---YILDILQRLNIMID 461
              F            C   +   L+ +Y  NG+L++ LY S+     +   QRL I I 
Sbjct: 88  TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
               L YLH   +  IIH D+K  N LLD+N V  ++DFGI+K  T   Q+         
Sbjct: 148 AARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGT 204
Query: 522 IGYMAP 527
           +GY+ P
Sbjct: 205 LGYIDP 210

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 130/264 (49%), Gaps = 29/264 (10%)
Query: 42  NLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
           NL+ L   ++ +N +     L  L+S+  +LS S N +T   P       ++N   L++L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSL-QQLSFSSNQVTDLKP-------LANLTTLERL 178
Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
           DIS N +      V+   + +LE +  ++  IS      +G LT+L  + L GN+L   I
Sbjct: 179 DISSNKVSDI--SVLAKLT-NLESLIATNNQISD--ITPLGILTNLDELSLNGNQL-KDI 232
Query: 157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN 216
             TL  L  L  L    N++    P  L  L  L +L L  N++S   P     LTAL N
Sbjct: 233 G-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
           L L+ N+L  I S + NLK++ YL  + N      P  + +L  L R+ FS NN + D+ 
Sbjct: 288 LELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFS-NNKVSDV- 342
Query: 277 TTIQGLKSLQFLSLGHNRLQGSIP 300
           +++  L ++ +LS GHN++    P
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP 366

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 35/146 (23%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKV-----FHFSCSNEDFR-------------------- 427
           IG GSFG+V++A    G + A+K+     FH    NE  R                    
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 428 ------ALVLEYTTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                 ++V EY + GSL ++L+ S     LD  +RL++  DV   + YLH   + PI+H
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVH 162
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKL 505
            DLK  N L+D      + DFG+++L
Sbjct: 163 RDLKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 16/221 (7%)
Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           +++ L  ++N   L++LDIS N +      V+   + +LE +  ++  IS      +G L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISD--ITPLGIL 215
Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T+L  + L GN+L   I  TL  L  L  L    N++    P  L  L  L +L L  N+
Sbjct: 216 TNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           +S   P     LTAL NL L+ N+L  I S + NLK++ YL  + N      P  + +L 
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
            L R+ FS NN + D+ +++  L ++ +LS GHN++    P
Sbjct: 327 KLQRLFFS-NNKVSDV-SSLANLTNINWLSAGHNQISDLTP 365

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 29/264 (10%)
Query: 42  NLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
           NL+ L   ++ +N +     L  L+S+  +LS S N +T   P       ++N   L++L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSL-QQLSFSSNQVTDLKP-------LANLTTLERL 178
Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
           DIS N +      V+   + +LE +  ++  IS      +G LT+L  + L GN+L   I
Sbjct: 179 DISSNKVSDI--SVLAKLT-NLESLIATNNQISD--ITPLGILTNLDELSLNGNQL-KDI 232
Query: 157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN 216
             TL  L  L  L    N++    P  L  L  L +L L  N++S   P     LTAL N
Sbjct: 233 G-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
           L L+ N+L  I S + NLK++ YL  + N      P  + +L  L R+ F  NN + D+ 
Sbjct: 288 LELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV- 342
Query: 277 TTIQGLKSLQFLSLGHNRLQGSIP 300
           +++  L ++ +LS GHN++    P
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP 366

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 142/293 (48%), Gaps = 37/293 (12%)
Query: 22  RICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLT------ 75
           +I  I     L  +  +T+FN    ++ D+D    L  L+++ + L LS N ++      
Sbjct: 100 QIADITPLANLTNLTGLTLFNN---QITDID---PLKNLTNL-NRLELSSNTISDISALS 152
Query: 76  --SSTPELSF------LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN 127
             +S  +LSF      L  ++N   L++LDIS N +      V+   + +LE +  ++  
Sbjct: 153 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQ 209
Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
           IS      +G LT+L  + L GN+L   I  TL  L  L  L    N++    P  L  L
Sbjct: 210 ISD--ITPLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP--LSGL 263
Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF 247
             L +L L  N++S   P     LTAL NL L+ N+L  I S + NLK++ YL  + N  
Sbjct: 264 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 320
Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
               P  + +L  L R+ F+ NN + D+ +++  L ++ +LS GHN++    P
Sbjct: 321 SDISP--VSSLTKLQRLFFA-NNKVSDV-SSLANLTNINWLSAGHNQISDLTP 369

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 141/293 (48%), Gaps = 37/293 (12%)
Query: 22  RICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLT------ 75
           +I  I     L  +  +T+FN    ++ D+D    L  L+++ + L LS N ++      
Sbjct: 101 QIADITPLANLTNLTGLTLFNN---QITDID---PLKNLTNL-NRLELSSNTISDISALS 153
Query: 76  --SSTPELSF------LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN 127
             +S  +LSF      L  ++N   L++LDIS N +      V+   + +LE +  ++  
Sbjct: 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQ 210
Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
           IS      +G LT+L  + L GN+L   I  TL  L  L  L    N++    P  L  L
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP--LSGL 264
Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF 247
             L +L L  N++S   P     LTAL NL L+ N+L  I S + NLK++ YL  + N  
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 321
Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
               P  + +L  L R+ F  NN + D+ +++  L ++ +LS GHN++    P
Sbjct: 322 SDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 370

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 16/224 (7%)
Query: 77  STPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI 136
           S+ +++ L  ++N   L++LDIS N +      V+   + +LE +  ++  IS      +
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISD--ITPL 213
Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
           G LT+L  + L GN+L   I  TL  L  L  L    N++    P  L  L  L +L L 
Sbjct: 214 GILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
            N++S   P     LTAL NL L+ N+L  I S + NLK++ YL  + N      P  + 
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VS 324
Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
           +L  L R+ F  NN + D+ +++  L ++ +LS GHN++    P
Sbjct: 325 SLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 366

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 35/146 (23%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKV-----FHFSCSNEDFR-------------------- 427
           IG GSFG+V++A    G + A+K+     FH    NE  R                    
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 428 ------ALVLEYTTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                 ++V EY + GSL ++L+ S     LD  +RL++  DV   + YLH   + PI+H
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVH 162
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKL 505
            +LK  N L+D      + DFG+++L
Sbjct: 163 RNLKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           +++ L  ++N   L++LDIS N +      V+   + +LE +  ++  IS      +G L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISD--ITPLGIL 215
Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T+L  + L GN+L   I  TL  L  L  L    N++    P  L  L  L +L L  N+
Sbjct: 216 TNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           +S   P     LTAL NL L+ N+L  I S + NLK++ YL  + N      P  + +L 
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
            L R+ F  NN + D+ +++  L ++ +LS GHN++    P
Sbjct: 327 KLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 365

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 46/193 (23%)
Query: 368 PQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF--------- 417
           PQ  ++R          + F    ++G GSF +V  AR L    E+AIK+          
Sbjct: 1   PQPRKKR---------PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKEN 51
Query: 418 -----------------------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQ 454
                                  +F+  +++     L Y  NG L K +       +   
Sbjct: 52  KVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCT 111
Query: 455 RLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           R     ++ SALEYLH      IIH DLKP N LL++++   ++DFG AK+L+ E +   
Sbjct: 112 RF-YTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR 167
Query: 515 QTQTLAIIGYMAP 527
               +    Y++P
Sbjct: 168 ANXFVGTAQYVSP 180

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 46/193 (23%)
Query: 368 PQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF--------- 417
           PQ  ++R          + F    ++G GSF +V  AR L    E+AIK+          
Sbjct: 2   PQPRKKR---------PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKEN 52
Query: 418 -----------------------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQ 454
                                  +F+  +++     L Y  NG L K +       +   
Sbjct: 53  KVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCT 112
Query: 455 RLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           R     ++ SALEYLH      IIH DLKP N LL++++   ++DFG AK+L+ E +   
Sbjct: 113 RF-YTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR 168
Query: 515 QTQTLAIIGYMAP 527
               +    Y++P
Sbjct: 169 ANXFVGTAQYVSP 181

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 37/183 (20%)
Query: 378 QELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF------------------- 417
           Q   +  + F    ++G GSF +V  AR L    E+AIK+                    
Sbjct: 1   QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERD 60
Query: 418 -------------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS 464
                        +F+  +++     L Y  NG L K +       +   R     ++ S
Sbjct: 61  VMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVS 119
Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
           ALEYLH      IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y
Sbjct: 120 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 176
Query: 525 MAP 527
           ++P
Sbjct: 177 VSP 179

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 37/179 (20%)
Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF----------------------- 417
           +  + F    ++G GSF +V  AR L    E+AIK+                        
Sbjct: 4   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 63
Query: 418 ---------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                    +F+  +++     L Y  NG L K +       +   R     ++ SALEY
Sbjct: 64  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEY 122
Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LH      IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 123 LH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 178

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 203

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 93  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 150
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 151 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 204

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 93  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 150
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 151 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 204

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 35  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 94
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 95  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 152
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 153 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 206

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 203

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 147
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 148 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 201

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 203

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 147
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 148 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSP 201

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 203

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 14  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 73
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 74  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 131
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 132 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 185

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 203

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 89  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 146
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 147 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 200

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 147
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 148 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 201

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 92  PFFVKLYFTFQDDEKLYFGLSYAKNGCLLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 149
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 150 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 203

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 89  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 146
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 147 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 200

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFH------------------------- 418
           + F    ++G GSF +V  AR L    E+AIK+                           
Sbjct: 37  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 96
Query: 419 ------FSCSNEDFRALV-LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 + C  +D +    L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 97  PFFVKLYFCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 154
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 155 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 208

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 73/182 (40%), Gaps = 48/182 (26%)
Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------CSNE 424
            LIGRG +G+VYK  L D    A+KVF F+                            +E
Sbjct: 19  ELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDE 77
Query: 425 DFRA-------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF------ 471
              A       LV+EY  NGSL K  Y S +  D +    +   VT  L YLH       
Sbjct: 78  RVTADGRMEYLLVMEYYPNGSLXK--YLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGD 135
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE------DQSMTQTQTLAIIGYM 525
            Y   I H DL   N L+ ++    +SDFG++  LTG       ++       +  I YM
Sbjct: 136 HYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYM 195
Query: 526 AP 527
           AP
Sbjct: 196 AP 197

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 37/176 (21%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F    ++G GSF +   AR L    E+AIK+                           
Sbjct: 30  EDFKFGKILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +F+  +++     L Y  NG L K +       +   R     ++ SALEYLH 
Sbjct: 90  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRF-YTAEIVSALEYLH- 147
Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 148 --GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSP 201

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-FGYSTPIIHCDLKPHNK 487
           +V EY  NGSL+  L + +    I+Q + ++  V + + YL   GY    +H DL   N 
Sbjct: 127 IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY----VHRDLAARNV 182
Query: 488 LLDDNIVAHLSDFGIAKLLTGE-DQSMTQTQTLAIIGYMAP 527
           L+D N+V  +SDFG++++L  + D + T T     I + AP
Sbjct: 183 LVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAP 223

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-FGYSTPIIHCDLKPHNK 487
           +V EY  NGSL+  L + +    I+Q + ++  V + + YL   GY    +H DL   N 
Sbjct: 127 IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY----VHRDLAARNV 182
Query: 488 LLDDNIVAHLSDFGIAKLLTGE-DQSMTQTQTLAIIGYMAP 527
           L+D N+V  +SDFG++++L  + D + T T     I + AP
Sbjct: 183 LVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAP 223

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 40/177 (22%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG+A++L  + ++   T+
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTR 208

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 40/176 (22%)
Query: 377 YQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR----- 427
           + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R     
Sbjct: 26  FAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 84
Query: 428 -------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDV 462
                                     +V EY  NGSL+  L   +    ++Q + ++  +
Sbjct: 85  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGI 144
Query: 463 TSALEYLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
            S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+
Sbjct: 145 ASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 196

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 40/176 (22%)
Query: 377 YQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR----- 427
           + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R     
Sbjct: 9   FAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 67
Query: 428 -------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDV 462
                                     +V EY  NGSL+  L   +    ++Q + ++  +
Sbjct: 68  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGI 127
Query: 463 TSALEYLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
            S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+
Sbjct: 128 ASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 179

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 37/193 (19%)
Query: 365 NMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-SCSN 423
            ++P+  R    Y E+  +    S    IG GSFG+VYK +     + A+K+      + 
Sbjct: 18  KIRPRGQRDSSYYWEIEASEVMLSTR--IGSGSFGTVYKGKWHG--DVAVKILKVVDPTP 73
Query: 424 EDFRA-----------------------------LVLEYTTNGSLEKVLYSSNYILDILQ 454
           E F+A                             +V ++    SL K L+       + Q
Sbjct: 74  EQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQ 133
Query: 455 RLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
            ++I       ++YLH   +  IIH D+K +N  L + +   + DFG+A + +    S  
Sbjct: 134 LIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQ 190
Query: 515 QTQTLAIIGYMAP 527
             Q    + +MAP
Sbjct: 191 VEQPTGSVLWMAP 203

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 40/177 (22%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 48/179 (26%)
Query: 390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------- 420
             +IG G FG VY+A    G E A+K                                  
Sbjct: 12  EEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70
Query: 421 ----CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
               C  E    LV+E+   G L +VL       DIL  +N  + +   + YLH     P
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDIL--VNWAVQIARGMNYLHDEAIVP 128
Query: 477 IIHCDLKPHNKLLDDNI--------VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           IIH DLK  N L+   +        +  ++DFG+A+    E    T+        +MAP
Sbjct: 129 IIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR----EWHRTTKMSAAGAYAWMAP 183

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 40/177 (22%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 35  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 93
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 94  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 153
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+
Sbjct: 154 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 206

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
            + EY   G+L  ++ S +      QR++   D+ S + YLH   S  IIH DL  HN L
Sbjct: 84  FITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCL 140
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
           + +N    ++DFG+A+L+  E    TQ + L
Sbjct: 141 VRENKNVVVADFGLARLMVDEK---TQPEGL 168

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG+ ++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-FGYSTPIIHCDLKPHNK 487
           +V EY  NGSL+  L  ++    ++Q + ++  +++ ++YL   GY    +H DL   N 
Sbjct: 100 IVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGY----VHRDLAARNI 155
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           L++ N+V  +SDFG++++L  + ++   T+   I I + AP
Sbjct: 156 LINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAP 196

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 41/175 (23%)
Query: 390 NNLIGRGSFGSVYKARLQDG-----MEFAIKVF--------------------HFSCSN- 423
             +IG G FG VYK  L+       +  AIK                       FS  N 
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108
Query: 424 -------EDFRALVL--EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL-HFGY 473
                    ++ +++  EY  NG+L+K L   +    +LQ + ++  + + ++YL +  Y
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY 168
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
               +H DL   N L++ N+V  +SDFG++++L  + ++   T    I I + AP
Sbjct: 169 ----VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 219

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V EY  NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   G+    +H DL   N L++ N+V  +SDFG++++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGF----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 73/194 (37%), Gaps = 45/194 (23%)
Query: 375 FSYQELLRATDGFS------ANNLIGRGSFGSVYKA---------------------RLQ 407
           FS+ EL   T+ F         N +G G FG VYK                       L+
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 408 DGMEFAIKVFH------------FSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDIL 453
              +  IKV              FS   +D   LV  Y  NGSL   L        L   
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
            R  I     + + +LH  +    IH D+K  N LLD+   A +SDFG+A+      Q++
Sbjct: 134 MRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 514 TQTQTLAIIGYMAP 527
             ++ +    YMAP
Sbjct: 191 MXSRIVGTTAYMAP 204

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 381 LRATDGFSANNLIGRGSFGSVYKA-RLQDGMEFAIKV-FHFSCSNEDFRALVLEYTTNGS 438
           + A    +    + R    +V+K  ++  G+E    V   +S  +E+   +V++    G 
Sbjct: 42  MYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGD 101
Query: 439 LEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS 498
           L   L  + +  +   +L I  ++  AL+YL    +  IIH D+KP N LLD++   H++
Sbjct: 102 LRYHLQQNVHFKEETVKLFI-CELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHIT 157
Query: 499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           DF IA +L  E Q  T   T     YMAP
Sbjct: 158 DFNIAAMLPRETQITTMAGTKP---YMAP 183

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ EY  NGSL+  L  ++    ++Q + ++  + S ++YL        +H DL   N L
Sbjct: 107 IITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS---DMSAVHRDLAARNIL 163
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           ++ N+V  +SDFG++++L  + ++   T+   I I + AP
Sbjct: 164 VNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAP 203

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
           F+  CS E    +V EY +NG L   L S    L+  Q L +  DV   + +L    S  
Sbjct: 68  FYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQ 124
Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            IH DL   N L+D ++   +SDFG+ + +  +DQ ++   T   + + AP
Sbjct: 125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVL-DDQYVSSVGTKFPVKWSAP 174

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ EY  NGSL+  L  ++    ++Q + ++  + S ++YL        +H DL   N L
Sbjct: 86  IITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS---DMSYVHRDLAARNIL 142
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           ++ N+V  +SDFG++++L  + ++   T+   I I + AP
Sbjct: 143 VNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAP 182

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 387 FSANNLIGRGSFGSVYKA-RLQDGMEFAIK-------------------------VFHFS 420
           F     +G GS+GSVYKA   + G   AIK                         V  + 
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYY 90
Query: 421 CS---NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
            S   N D   +V+EY   GS+  ++   N  L   +   I+      LEYLHF      
Sbjct: 91  GSYFKNTDL-WIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRK--- 146
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           IH D+K  N LL+    A L+DFG+A  LT  D    +   +    +MAP
Sbjct: 147 IHRDIKAGNILLNTEGHAKLADFGVAGQLT--DXMAKRNXVIGTPFWMAP 194

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ EY  NGSL+  L  ++    ++Q + ++  + S ++YL        +H DL   N L
Sbjct: 92  IITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLS---DMSYVHRDLAARNIL 148
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           ++ N+V  +SDFG++++L  + ++   T+   I I + AP
Sbjct: 149 VNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAP 188

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 72/194 (37%), Gaps = 45/194 (23%)
Query: 375 FSYQELLRATDGFS------ANNLIGRGSFGSVYKA---------------------RLQ 407
           FS+ EL   T+ F         N +G G FG VYK                       L+
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 408 DGMEFAIKVFH------------FSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDIL 453
              +  IKV              FS   +D   LV  Y  NGSL   L        L   
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
            R  I     + + +LH  +    IH D+K  N LLD+   A +SDFG+A+      Q++
Sbjct: 134 MRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 514 TQTQTLAIIGYMAP 527
              + +    YMAP
Sbjct: 191 MXXRIVGTTAYMAP 204

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 40/176 (22%)
Query: 377 YQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR----- 427
           + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R     
Sbjct: 9   FAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 67
Query: 428 -------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDV 462
                                     +V E   NGSL+  L   +    ++Q + ++  +
Sbjct: 68  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGI 127
Query: 463 TSALEYLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
            S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+
Sbjct: 128 ASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 179

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 41/188 (21%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V E   NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYL-HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + S ++YL   GY    +H DL   N L++ N+V  +SDFG++++L  + ++   T+   
Sbjct: 156 IASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 521 I-IGYMAP 527
           I I + +P
Sbjct: 212 IPIRWTSP 219

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 45/194 (23%)
Query: 375 FSYQELLRATDGFS------ANNLIGRGSFGSVYKA---------------------RLQ 407
           FS+ EL   T+ F         N +G G FG VYK                       L+
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 68
Query: 408 DGMEFAIKVFH------------FSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDIL 453
              +  IKV              FS   +D   LV  Y  NGSL   L        L   
Sbjct: 69  QQFDQEIKVMAKCQHENLVELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
            R  I     + + +LH  +    IH D+K  N LLD+   A +SDFG+A+      Q +
Sbjct: 128 MRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXV 184
Query: 514 TQTQTLAIIGYMAP 527
              + +    YMAP
Sbjct: 185 MXXRIVGTTAYMAP 198

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 45/166 (27%)
Query: 381 LRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------------------------ 415
           LR    F    ++G+G+FG V KAR   D   +AIK                        
Sbjct: 2   LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH 61
Query: 416 --VFHFSCSNEDFRALV---------------LEYTTNGSLEKVLYSSNYILDILQRLNI 458
             V  +  +  + R  V               +EY  NG+L  +++S N      +   +
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRL 121
Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
              +  AL Y+H   S  IIH DLKP N  +D++    + DFG+AK
Sbjct: 122 FRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAK 164

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 349 LISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQD 408
           ++ RC  RAT       +  + +  R S ++L    +       I R   G  +   L D
Sbjct: 109 VVRRCVHRATGHEFAVKIM-EVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID 167
Query: 409 GME---FAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSA 465
             E   F   VF      E F     +Y T    EKV  S      I++ L         
Sbjct: 168 SYESSSFMFLVFDLMRKGELF-----DYLT----EKVALSEKETRSIMRSL--------- 209
Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA-KLLTGEDQSMTQTQTLAIIGY 524
           LE + F ++  I+H DLKP N LLDDN+   LSDFG +  L  GE       +     GY
Sbjct: 210 LEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE----KLRELCGTPGY 265
Query: 525 MAP 527
           +AP
Sbjct: 266 LAP 268

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 20  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L++S    ++ + ++I       ++YLH   +  IIH DL
Sbjct: 78  TKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 134
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L ++    + DFG+A + +    S    Q    I +MAP
Sbjct: 135 KSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 179

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 40/170 (23%)
Query: 392 LIGRGSFGSVYKARLQ-DGMEFAIKVF--------------------------------- 417
           +IG+GSFG V  AR + + + +A+KV                                  
Sbjct: 45  VIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 104
Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           HFS    D    VL+Y   G L   L      L+   R     ++ SAL YLH   S  I
Sbjct: 105 HFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARF-YAAEIASALGYLH---SLNI 160
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           ++ DLKP N LLD      L+DFG+ K     + + T +       Y+AP
Sbjct: 161 VYRDLKPENILLDSQGHIVLTDFGLCK--ENIEHNSTTSTFCGTPEYLAP 208

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 107 LPRVVGNFSQSLEFIWMSDCNISG---GISEEIGNLTDLISIDLGGNKLNGSISITLGKL 163
           LP  +    ++LE +W++D  +     G+ +++ NL +L    L  N+L          L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL---RLDRNQLKSLPPRVFDSL 132
Query: 164 QKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE 223
            KL +LS   NEL+     V   L  L +L L  N+L       F  LT L+ L LD+N+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 224 LTSIPS 229
           L  +P 
Sbjct: 193 LKRVPE 198

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 88  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 144
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS 512
           DL   N L++D  V  +SDFG+++ +  ++++
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEET 176

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 45/167 (26%)
Query: 386 GFSANNLIGRGSFGSVYKARLQDGMEFAIK----------------------------VF 417
            ++   +IG GSFG V++A+L +  E AIK                             F
Sbjct: 41  AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAF 100
Query: 418 HFS---CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E F  LVLEY      E V  +S +   + Q + +      M  +  +L Y
Sbjct: 101 FYSNGDKKDEVFLNLVLEYVP----ETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAY 156
Query: 469 LHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMT 514
           +H   S  I H D+KP N LLD  + V  L DFG AK+L   + +++
Sbjct: 157 IH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVS 200

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 43  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 100
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 101 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 157
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 158 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 202

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 102 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 158
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 203

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 127 NISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPN-VLC 185
           ++  G+ +E+ +LT L    LGGNKL    +    KL  L +L+   N+L+ S+PN V  
Sbjct: 42  SLPNGVFDELTSLTQLY---LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFD 97
Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP 228
            L  L +L L  N+L       F  LT L++L L  N+L S+P
Sbjct: 98  KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 21  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 79  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 135
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 21  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 79  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 135
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 180

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 39/149 (26%)
Query: 391 NLIGRGSFGSVYKARLQDGMEFA----IKVFHFSCSNEDFR------------------- 427
           + +G G F +VYKAR ++  +      IK+ H S + +                      
Sbjct: 16  DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 75
Query: 428 ------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                       +LV ++     LE ++  ++ +L        M+     LEYLH  +  
Sbjct: 76  GLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW-- 132
Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
            I+H DLKP+N LLD+N V  L+DFG+AK
Sbjct: 133 -ILHRDLKPNNLLLDENGVLKLADFGLAK 160

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 18  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 76  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 132
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 133 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 177

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 74  TAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 74  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L++S    ++ + ++I       ++YLH   +  IIH DL
Sbjct: 90  TKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 146
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L ++    + DFG+A   +    S    Q    I +MAP
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL-HFGYSTPIIHCDLKPHNK 487
           +V+E+  NG+L+  L   +    ++Q + ++  + + + YL   GY    +H DL   N 
Sbjct: 121 IVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGY----VHRDLAARNI 176
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           L++ N+V  +SDFG+++++  + +++  T    I + + AP
Sbjct: 177 LVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAP 217

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L++S    ++ + ++I       ++YLH   +  IIH DL
Sbjct: 90  TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 146
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L ++    + DFG+A   +    S    Q    I +MAP
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 73  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 129
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           DL   N L++D  V  +SDFG+++ +  ++ + ++     +
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPV 170

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 39/187 (20%)
Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNEDFR---- 427
            + + L AT+  S + ++G G FG V   RL+      +  AIK      + +  R    
Sbjct: 37  EFAKELDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLG 95
Query: 428 --------------------------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                                      +V E   NGSL+  L   +    ++Q + ++  
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRG 155
Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           + S ++YL        +H DL   N L++ N+V  +SDFG++++L  + ++   T+   I
Sbjct: 156 IASGMKYLS---DMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212
Query: 522 -IGYMAP 527
            I + +P
Sbjct: 213 PIRWTSP 219

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 55/186 (29%)
Query: 390 NNLIGRGSFGSVYKARLQ-DG--MEFAIKVFHFSCSNEDFR------------------- 427
            ++IG G+FG V KAR++ DG  M+ AIK      S +D R                   
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 428 ------------ALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMI 460
                        L +EY  +G+L   L  S  +               L   Q L+   
Sbjct: 80  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 139
Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           DV   ++YL        IH DL   N L+ +N VA ++DFG+++   G++  + +T    
Sbjct: 140 DVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRL 193
Query: 521 IIGYMA 526
            + +MA
Sbjct: 194 PVRWMA 199

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 28/241 (11%)
Query: 28  SQNKLVGIVSIT---IFNLSTLKVFDVDNNYVLGRLSS---IVDELSLSDNYLTS-STPE 80
           S+NK+V ++      ++NL +L+V D D  Y+  R  S    +++L+L    LTS  T  
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 81  LSFLS------------------SMSNCKYLKKLDISRNP-LDGFLPRVVGNFSQSLEFI 121
           LS L                   S      LK L+IS  P LD   P  +  +  +L  +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSL 229
Query: 122 WMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP 181
            ++ CN++      + +L  L  ++L  N ++      L +L +LQ +   G +L    P
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLD 241
                L  L  L++ GN+L+    + F ++  L  L LDSN L     +LW  +    L+
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349
Query: 242 F 242
           F
Sbjct: 350 F 350

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 88  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 144
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLL 506
           DL   N L++D  V  +SDFG+++ +
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYV 170

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 55/186 (29%)
Query: 390 NNLIGRGSFGSVYKARLQ-DG--MEFAIKVFHFSCSNEDFR------------------- 427
            ++IG G+FG V KAR++ DG  M+ AIK      S +D R                   
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 428 ------------ALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMI 460
                        L +EY  +G+L   L  S  +               L   Q L+   
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149
Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           DV   ++YL        IH DL   N L+ +N VA ++DFG+++   G++  + +T    
Sbjct: 150 DVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRL 203
Query: 521 IIGYMA 526
            + +MA
Sbjct: 204 PVRWMA 209

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 79  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 135
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLL 506
           DL   N L++D  V  +SDFG+++ +
Sbjct: 136 DLAARNCLVNDQGVVKVSDFGLSRYV 161

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 73  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 129
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           DL   N L++D  V  +SDFG+++ +  ++
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDE 159

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ E+  NG+L+  L  ++    ++Q + ++  + S + YL        +H DL   N L
Sbjct: 94  ILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLA---EMSYVHRDLAARNIL 150
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA---IIGYMAP 527
           ++ N+V  +SDFG+++ L       T+T +L     I + AP
Sbjct: 151 VNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTAP 192

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 414 IKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
           IK++    +  DF  +V+EY + G L   +     + ++  R  +   + SA++Y H   
Sbjct: 74  IKLYQVISTPTDF-FMVMEYVSGGELFDYICKHGRVEEMEAR-RLFQQILSAVDYCH--- 128
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
              ++H DLKP N LLD ++ A ++DFG++ +++
Sbjct: 129 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ E+  NGSL+  L  ++    ++Q + ++  + + ++YL        +H DL   N L
Sbjct: 111 IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNIL 167
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           ++ N+V  +SDFG+++ L  ED +   T T A+ G
Sbjct: 168 VNSNLVCKVSDFGLSRFL--EDDTSDPTYTSALGG 200

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 72  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 128
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           DL   N L++D  V  +SDFG+++ +  ++
Sbjct: 129 DLAARNCLVNDQGVVKVSDFGLSRYVLDDE 158

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 70/194 (36%), Gaps = 45/194 (23%)
Query: 375 FSYQELLRATDGFS------ANNLIGRGSFGSVYKA---------------------RLQ 407
           FS+ EL   T+ F         N  G G FG VYK                       L+
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 65
Query: 408 DGMEFAIKV------------FHFSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDIL 453
              +  IKV              FS   +D   LV  Y  NGSL   L        L   
Sbjct: 66  QQFDQEIKVXAKCQHENLVELLGFSSDGDDL-CLVYVYXPNGSLLDRLSCLDGTPPLSWH 124
Query: 454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
            R  I     + + +LH  +    IH D+K  N LLD+   A +SDFG+A+      Q +
Sbjct: 125 XRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXV 181
Query: 514 TQTQTLAIIGYMAP 527
             ++ +    Y AP
Sbjct: 182 XXSRIVGTTAYXAP 195

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 414 IKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
           IK++    +  DF  +V+EY + G L   +     + ++  R  +   + SA++Y H   
Sbjct: 74  IKLYQVISTPTDF-FMVMEYVSGGELFDYICKHGRVEEMEAR-RLFQQILSAVDYCH--- 128
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
              ++H DLKP N LLD ++ A ++DFG++ +++
Sbjct: 129 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEY--TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           C+ +    ++ EY  NG L   L    +     Q L +  DV  A+EYL    S   +H 
Sbjct: 68  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHR 124
Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           DL   N L++D  V  +SDFG+++ +  ++
Sbjct: 125 DLAARNCLVNDQGVVKVSDFGLSRYVLDDE 154

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 40/157 (25%)
Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------- 417
           + F   NL+G+GSF  VY+A  +  G+E AIK+                           
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70
Query: 418 --------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL 469
                   +F  SN  +  LVLE   NG + + L +        +  + M  + + + YL
Sbjct: 71  PSILELYNYFEDSN--YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYL 128
Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
           H   S  I+H DL   N LL  N+   ++DFG+A  L
Sbjct: 129 H---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQL 162

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 49/164 (29%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 160
Query: 418 HFSC---SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E +  LVL+Y      E V   + +     Q L +      M  +  +L Y
Sbjct: 161 FYSSGEKKDEVYLNLVLDYVP----ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 216
Query: 469 LH-FGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           +H FG    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 217 IHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 256

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 49/164 (29%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 56  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 115
Query: 418 HFSC---SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E +  LVL+Y      E V   + +     Q L +      M  +  +L Y
Sbjct: 116 FYSSGEKKDEVYLNLVLDYVP----ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 171
Query: 469 LH-FGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           +H FG    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 172 IHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 211

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 35  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 94
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 95  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 154
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 155 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 190

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 49/164 (29%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 60  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 119
Query: 418 HFSC---SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E +  LVL+Y      E V   + +     Q L +      M  +  +L Y
Sbjct: 120 FYSSGEKKDEVYLNLVLDYVP----ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 175
Query: 469 LH-FGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           +H FG    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 176 IHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 215

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 30  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 89
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 90  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 149
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 150 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 185

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 49/164 (29%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 56  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 115
Query: 418 HFSC---SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E +  LVL+Y      E V   + +     Q L +      M  +  +L Y
Sbjct: 116 FYSSGEKKDEVYLNLVLDYVP----ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 171
Query: 469 LH-FGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           +H FG    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 172 IHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 211

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 49/164 (29%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 58  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 117
Query: 418 HFSC---SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI------MIDVTSALEY 468
            +S     +E +  LVL+Y      E V   + +     Q L +      M  +  +L Y
Sbjct: 118 FYSSGEKKDEVYLNLVLDYVP----ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 173
Query: 469 LH-FGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           +H FG    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 174 IHSFG----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 213

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
             +D   LV+EY    +L + +  S+  L +   +N    +   +++ H      I+H D
Sbjct: 81  EEDDCYYLVMEYIEGPTLSEYI-ESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRD 136
Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT-QTLAIIGYMAP 527
           +KP N L+D N    + DFGIAK L+  + S+TQT   L  + Y +P
Sbjct: 137 IKPQNILIDSNKTLKIFDFGIAKALS--ETSLTQTNHVLGTVQYFSP 181

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 26  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 85
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 86  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 145
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 146 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 181

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 41  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 100
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 101 FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 160
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 161 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 196

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 34  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 93
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 94  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 153
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 154 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 189

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 44  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 102 TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 158
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A   +    S    Q    I +MAP
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 203

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 34  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 93
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 94  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 153
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 154 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 189

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 50  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 109
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 110 FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 169
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 170 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 205

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 36  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 93
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 94  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 150
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A   +    S    Q    I +MAP
Sbjct: 151 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 195

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 23  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 82
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 83  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 142
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 143 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 178

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFA-----------------------------IKVF 417
           ++   +IG GSFG VY+A+L D  E                               ++ F
Sbjct: 27  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 86
Query: 418 HFSC---SNEDFRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
            +S     +E +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 87  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 146
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 147 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 182

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 40/181 (22%)
Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNED-----FR---------- 427
           +D +    ++G G    V+ AR L+D  + A+KV     + +      FR          
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 428 --ALVLEYTTNGSLEKVLYSSNYIL----------DILQRLNIMID------VTSALEYL 469
             A+V  Y T G  E       YI+          DI+     M        +  A + L
Sbjct: 71  HPAIVAVYDT-GEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQAL 129
Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMA 526
           +F +   IIH D+KP N ++       + DFGIA+ +   D   + TQT A+IG   Y++
Sbjct: 130 NFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLS 187
Query: 527 P 527
           P
Sbjct: 188 P 188

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 40/181 (22%)
Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNED-----FR---------- 427
           +D +    ++G G    V+ AR L+D  + A+KV     + +      FR          
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 428 --ALVLEYTTNGSLEKVLYSSNYIL----------DILQRLNIMID------VTSALEYL 469
             A+V  Y T G  E       YI+          DI+     M        +  A + L
Sbjct: 71  HPAIVAVYDT-GEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQAL 129
Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMA 526
           +F +   IIH D+KP N ++       + DFGIA+ +   D   + TQT A+IG   Y++
Sbjct: 130 NFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLS 187
Query: 527 P 527
           P
Sbjct: 188 P 188

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +       + F+                     
Sbjct: 16  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L+      ++++ ++I       ++YLH   +  IIH DL
Sbjct: 74  TKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L +++   + DFG+A   +    S    Q    I +MAP
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 175

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 425 DFRALVLEYTTNGSLEKVLYSSNYILDILQR--LNIMIDVTSALEYLHFGYSTPIIHCDL 482
           D   L +EY   G L K L        + +     ++ D++SAL YLH      IIH DL
Sbjct: 92  DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDL 148
Query: 483 KPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           KP N +L      ++  + D G AK L   DQ    T+ +  + Y+AP
Sbjct: 149 KPENIVLQPGPQRLIHKIIDLGYAKEL---DQGELCTEFVGTLQYLAP 193

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 425 DFRALVLEYTTNGSLEKVLYSSNYILDILQR--LNIMIDVTSALEYLHFGYSTPIIHCDL 482
           D   L +EY   G L K L        + +     ++ D++SAL YLH      IIH DL
Sbjct: 91  DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDL 147
Query: 483 KPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           KP N +L      ++  + D G AK L   DQ    T+ +  + Y+AP
Sbjct: 148 KPENIVLQPGPQRLIHKIIDLGYAKEL---DQGELCTEFVGTLQYLAP 192

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++++Y   G L  +L  S    + + +     +V  ALEYLH   S  II+ DLKP N L
Sbjct: 83  MIMDYIEGGELFSLLRKSQRFPNPVAKF-YAAEVCLALEYLH---SKDIIYRDLKPENIL 138
Query: 489 LDDNIVAHLSDFGIAKLL 506
           LD N    ++DFG AK +
Sbjct: 139 LDKNGHIKITDFGFAKYV 156

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N L
Sbjct: 79  LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EASVIHRDLAARNCL 135
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           + +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 136 VGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 173

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N 
Sbjct: 81  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 137
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 138 LVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 176

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEF-AIK-----------------------------V 416
           ++   +IG GSFG VY+A+L D  E  AIK                              
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81
Query: 417 FHFSCSNED--FRALVLEYT--TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-F 471
           F+ S   +D  +  LVL+Y   T   + +    +   L ++     M  +  +L Y+H F
Sbjct: 82  FYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 472 GYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAK-LLTGE 509
           G    I H D+KP N LLD D  V  L DFG AK L+ GE
Sbjct: 142 G----ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDF----------------------- 426
             ++GRG+FG V KA+ +   + AIK        + F                       
Sbjct: 14  EEVVGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL 72
Query: 427 --RALVLEYTTNGSLEKVLYSSNYI--LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
               LV+EY   GSL  VL+ +  +        ++  +  +  + YLH      +IH DL
Sbjct: 73  NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDL 132
Query: 483 KPHNKLL-DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           KP N LL     V  + DFG     T  D     T       +MAP
Sbjct: 133 KPPNLLLVAGGTVLKICDFG-----TACDIQTHMTNNKGSAAWMAP 173

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +V+EY    +L  ++++   +    + + ++ D   A + L+F +   IIH D+KP N +
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTP-KRAIEVIAD---ACQALNFSHQNGIIHRDVKPANIM 148
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +       + DFGIA+ +   D   + TQT A+IG   Y++P
Sbjct: 149 ISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLSP 188

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +V+EY    +L  ++++    +   + + ++ D   A + L+F +   IIH D+KP N +
Sbjct: 93  IVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIAD---ACQALNFSHQNGIIHRDVKPANIM 148
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +       + DFGIA+ +   D   + TQT A+IG   Y++P
Sbjct: 149 ISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLSP 188

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDF----------------------- 426
             ++GRG+FG V KA+ +   + AIK        + F                       
Sbjct: 13  EEVVGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL 71
Query: 427 --RALVLEYTTNGSLEKVLYSSNYI--LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
               LV+EY   GSL  VL+ +  +        ++  +  +  + YLH      +IH DL
Sbjct: 72  NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDL 131
Query: 483 KPHNKLL-DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           KP N LL     V  + DFG     T  D     T       +MAP
Sbjct: 132 KPPNLLLVAGGTVLKICDFG-----TACDIQTHMTNNKGSAAWMAP 172

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC--SNEDFRALV------------- 430
           FS    IG GSFG+VY AR +++    AIK   +S   SNE ++ ++             
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 431 ---------LEYTTNGSLEKVLYSSNYILDI----LQRLNIMIDVTSALEYLHFGYSTPI 477
                     E+T    +E  L S++ +L++    LQ + I      AL+ L + +S  +
Sbjct: 116 TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM 175
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
           IH D+K  N LL +  +  L DFG A ++ 
Sbjct: 176 IHRDVKAGNILLSEPGLVKLGDFGSASIMA 205

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N 
Sbjct: 78  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 134
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 135 LVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 173

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +V+EY    +L  ++++    +   + + ++ D   A + L+F +   IIH D+KP N +
Sbjct: 110 IVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIAD---ACQALNFSHQNGIIHRDVKPANIM 165
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +       + DFGIA+ +   D   + TQT A+IG   Y++P
Sbjct: 166 ISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLSP 205

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 45/166 (27%)
Query: 381 LRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------------------------ 415
           LR    F    ++G+G+FG V KAR   D   +AIK                        
Sbjct: 2   LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH 61
Query: 416 --VFHFSCSNEDFRALV---------------LEYTTNGSLEKVLYSSNYILDILQRLNI 458
             V  +  +  + R  V               +EY  N +L  +++S N      +   +
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRL 121
Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
              +  AL Y+H   S  IIH DLKP N  +D++    + DFG+AK
Sbjct: 122 FRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAK 164

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N 
Sbjct: 98  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 154
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 155 LVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 193

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N 
Sbjct: 76  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 132
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 133 LVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 171

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ E+  NG+L+  L  ++    ++Q + ++  + S + YL        +H DL   N L
Sbjct: 92  ILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLA---EMSYVHRDLAARNIL 148
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA---IIGYMAP 527
           ++ N+V  +SDFG+++ L       T T +L     I + AP
Sbjct: 149 VNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAP 190

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
           +  G+ +++ NL +L+ ++   N+L         KL  L +L    N+L+     V   L
Sbjct: 100 LPNGVFDKLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL 156
Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP----------SILWNL--- 234
             L +LDL  N+L       F  LT L+ L L+ N+L S+P          + +W L   
Sbjct: 157 TNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
Query: 235 -----KDILYLDFW 243
                 DILYL  W
Sbjct: 217 WDCACSDILYLSRW 230

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC--SNEDFRALV------------- 430
           FS    IG GSFG+VY AR +++    AIK   +S   SNE ++ ++             
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 431 ---------LEYTTNGSLEKVLYSSNYILDI----LQRLNIMIDVTSALEYLHFGYSTPI 477
                     E+T    +E  L S++ +L++    LQ + I      AL+ L + +S  +
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM 136
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
           IH D+K  N LL +  +  L DFG A ++ 
Sbjct: 137 IHRDVKAGNILLSEPGLVKLGDFGSASIMA 166

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 81/214 (37%), Gaps = 52/214 (24%)
Query: 354 QKRATKLPNVSNMQPQ-ASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGME 411
           Q +  + P V   QPQ A R    Y  L      F     IGRG F  VY+A  L DG+ 
Sbjct: 4   QSQGMQGPPVPQFQPQKALRPDMGYNTLA----NFRIEKKIGRGQFSEVYRAACLLDGVP 59
Query: 412 FAIKVFH-FSCSNEDFRA-------------------------------LVLEYTTNGSL 439
            A+K    F   +   RA                               +VLE    G L
Sbjct: 60  VALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDL 119
Query: 440 EKVLYSSNYILDILQRLNI---MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH 496
            +++        ++    +    + + SALE++H   S  ++H D+KP N  +    V  
Sbjct: 120 SRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVK 176
Query: 497 LSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           L D G+ +  + +      T   +++G   YM+P
Sbjct: 177 LGDLGLGRFFSSK-----TTAAHSLVGTPYYMSP 205

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNED-----FR---------- 427
           +D +    ++G G    V+ AR L+D  + A+KV     + +      FR          
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 428 --ALVLEYTTNGSLEKVLYSSNYIL----------DILQRLNIMID------VTSALEYL 469
             A+V  Y T G  E       YI+          DI+     M        +  A + L
Sbjct: 71  HPAIVAVYDT-GEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQAL 129
Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMA 526
           +F +   IIH D+KP N L+       + DFGIA+ +   D   +  QT A+IG   Y++
Sbjct: 130 NFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIA--DSGNSVXQTAAVIGTAQYLS 187
Query: 527 P 527
           P
Sbjct: 188 P 188

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFAIK-------------------------VFHFSC 421
           F   +++G G+ G++    + D  + A+K                         V  + C
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFC 85
Query: 422 SNED--FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           + +D  F+ + +E     +L++ +   ++    L+ + ++   TS L +LH   S  I+H
Sbjct: 86  TEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVH 141
Query: 480 CDLKPHNKLL-----DDNIVAHLSDFGIA-KLLTGEDQSMTQTQTLAIIGYMAP 527
            DLKPHN L+        I A +SDFG+  KL  G      ++      G++AP
Sbjct: 142 RDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAP 195

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            +V+EY      + ++       D  +R      +  A+EY H      I+H DLKP N 
Sbjct: 85  VMVIEYAGGELFDYIVEKKRMTEDEGRRF--FQQIICAIEYCH---RHKIVHRDLKPENL 139
Query: 488 LLDDNIVAHLSDFGIAKLLT 507
           LLDDN+   ++DFG++ ++T
Sbjct: 140 LLDDNLNVKIADFGLSNIMT 159

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 49/184 (26%)
Query: 387 FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--SCSNEDFRALV------------- 430
           F    LIG G FG V+KA+ + DG  + IK   +    +  + +AL              
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGC 72
Query: 431 --------------------------LEYTTNGSLEK-VLYSSNYILDILQRLNIMIDVT 463
                                     +E+   G+LE+ +       LD +  L +   +T
Sbjct: 73  WDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQIT 132
Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
             ++Y+H   S  +I+ DLKP N  L D     + DFG+   L  + +      TL    
Sbjct: 133 KGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRSKGTLR--- 186
Query: 524 YMAP 527
           YM+P
Sbjct: 187 YMSP 190

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK 487
            LV E+  +G L   L +   +      L + +DV   + YL       +IH DL   N 
Sbjct: 79  CLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 135
Query: 488 LLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 136 LVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 174

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    +++E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 79  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 135
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 136 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFPIKWTAP 182

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 37/165 (22%)
Query: 369 QASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNED--- 425
           +AS+     QE     +      LIG+G FG VY  R     E AI++      NED   
Sbjct: 17  KASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLK 74
Query: 426 -FRALVLEYTTN---------------------------GSLEKVLYSSNYILDILQRLN 457
            F+  V+ Y                               +L  V+  +  +LD+ +   
Sbjct: 75  AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQ 134
Query: 458 IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGI 502
           I  ++   + YLH   +  I+H DLK  N   D+  V  ++DFG+
Sbjct: 135 IAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKVV-ITDFGL 175

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 55/186 (29%)
Query: 390 NNLIGRGSFGSVYKARLQ-DG--MEFAIKVFHFSCSNEDFR------------------- 427
            ++IG G+FG V KAR++ DG  M+ AIK      S +D R                   
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 428 ------------ALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMI 460
                        L +EY  +G+L   L  S  +               L   Q L+   
Sbjct: 87  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 146
Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           DV   ++YL        IH +L   N L+ +N VA ++DFG+++   G++  + +T    
Sbjct: 147 DVARGMDYLS---QKQFIHRNLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRL 200
Query: 521 IIGYMA 526
            + +MA
Sbjct: 201 PVRWMA 206

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 75
Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY + GSL   L   +   L + Q +++   + S + Y+        +H DL+ 
Sbjct: 76  PIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRA 132
Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 133 ANILVGENLVCKVADFGLARLI--EDNEXTARQGAKFPIKWTAP 174

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 431 LEYTTNGSLEK-VLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL 489
           +E+   G+LE+ +       LD +  L +   +T  ++Y+H   S  +IH DLKP N  L
Sbjct: 113 MEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLIHRDLKPSNIFL 169
Query: 490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            D     + DFG+   L  + +   +T++   + YM+P
Sbjct: 170 VDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSP 204

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V+EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEXTARQGAKFPIKWTAP 184

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V+EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 184

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    +++E+ T G+L   L   N   +  +  L +   ++SA+EYL        IH
Sbjct: 76  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIH 132
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 133 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFPIKWTAP 179

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 44/152 (28%)
Query: 393 IGRGSFGSVYKARLQD-GMEFAIKVF------------------------HFSCSN--ED 425
           IG GS+G V+K R +D G   AIK F                        H +  N  E 
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70
Query: 426 FR-----ALVLEYTTNGSLEKVLYSSNYILDILQR---LNIMIDVT-SALEYLHFGYSTP 476
           FR      LV EY  +  L +        LD  QR    +++  +T   L+ ++F +   
Sbjct: 71  FRRKRRLHLVFEYCDHTVLHE--------LDRYQRGVPEHLVKSITWQTLQAVNFCHKHN 122
Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG 508
            IH D+KP N L+  + V  L DFG A+LLTG
Sbjct: 123 CIHRDVKPENILITKHSVIKLCDFGFARLLTG 154

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L   +   L + Q +++   + S + Y+        
Sbjct: 328 YAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNY 384
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 433

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    +++E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 83  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 139
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 186

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 38/158 (24%)
Query: 378 QELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKV-------------------- 416
           +E+    D F    +IGRG+F  V   ++ Q G  +A+K+                    
Sbjct: 54  KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERD 113
Query: 417 ------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS 464
                        HF+  +E++  LV+EY   G L  +L      +        + ++  
Sbjct: 114 VLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVM 173
Query: 465 ALEYLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG 501
           A++ +H  GY    +H D+KP N LLD      L+DFG
Sbjct: 174 AIDSVHRLGY----VHRDIKPDNILLDRCGHIRLADFG 207

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
           NED   +V E    G + +V        D  Q      D+   +EYLH+     IIH D+
Sbjct: 109 NEDHLYMVFELVNQGPVMEVPTLKPLSED--QARFYFQDLIKGIEYLHY---QKIIHRDI 163
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           KP N L+ ++    ++DFG++    G D  +  + T+    +MAP
Sbjct: 164 KPSNLLVGEDGHIKIADFGVSNEFKGSDALL--SNTVGTPAFMAP 206

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 251
Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY + GSL   L   +   L + Q +++   + S + Y+        +H DL+ 
Sbjct: 252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRA 308
Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 309 ANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 350

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 251
Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY + GSL   L   +   L + Q +++   + S + Y+        +H DL+ 
Sbjct: 252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRA 308
Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 309 ANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 350

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 93  LKKLDISRNPLDGFLPRVVGNFSQ--------SLEFIWMSDCNISGGISEEIGNLTDLIS 144
           L+ L ++RNPL   LP  + + ++          E   + +   S   S E   L +L S
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI 204
           + L    +  S+  ++  LQ L+ L  R + L    P  + HL  L +LDLRG     + 
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245
Query: 205 PTCFGNLTALRNLHL-DSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           P  FG    L+ L L D + L ++P  +  L  +  LD    + +  LPS I  L  
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L   +   L + Q +++   + S + Y+        
Sbjct: 72  YAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNY 128
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 129 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 177

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    +++E+ T G+L   L   N   +  +  L +   ++SA+EYL        IH
Sbjct: 78  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIH 134
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 181

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
           +  G+ +++ NL +L+ ++   N+L         KL  L +L+   N+L+     V   L
Sbjct: 100 LPNGVFDKLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP 228
             L +LDL  N+L       F  LT L++L L  N+L S+P
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    +++E+ T G+L   L   N   +  +  L +   ++SA+EYL        IH
Sbjct: 78  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIH 134
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 181

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 139
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFPIKWTAP 186

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           ++ E+  NGSL+  L  ++    ++Q + ++  + + ++YL        +H  L   N L
Sbjct: 85  IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRALAARNIL 141
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           ++ N+V  +SDFG+++ L  ED +   T T A+ G
Sbjct: 142 VNSNLVCKVSDFGLSRFL--EDDTSDPTYTSALGG 174

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 184

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 79  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 135
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
            DL   N L+ +N +  ++DFG+++L+TG+
Sbjct: 136 RDLAARNCLVGENHLVKVADFGLSRLMTGD 165

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 34/164 (20%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 82
Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY   GSL   L   +   L + Q +++   + S + Y+        +H DL+ 
Sbjct: 83  PIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE---RMNYVHRDLRA 139
Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 140 ANILVGENLVCKVADFGLARLI--EDNEWTARQGAKFPIKWTAP 181

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 184

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 91  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 147
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 148 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 194

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AI+  +           NE                    
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 142
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPE-----QSKRSTMVGTPYWMAP 185

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 50/181 (27%)
Query: 384 TDGFSANNLIGRGSFGSVYKARLQDGME--FAIKVFHFSCSNEDFR-------------- 427
           +D F   + +GRG+   VY+ + Q G +  +A+KV   +   +  R              
Sbjct: 52  SDFFEVESELGRGATSIVYRCK-QKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNI 110
Query: 428 -------------ALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSALEYL 469
                        +LVLE  T G L     EK  YS     D +++      +  A+ YL
Sbjct: 111 IKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQ------ILEAVAYL 164
Query: 470 HFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           H      I+H DLKP N L      +    ++DFG++K++  E Q + +T      GY A
Sbjct: 165 H---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV--EHQVLMKT-VCGTPGYCA 218
Query: 527 P 527
           P
Sbjct: 219 P 219

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 70  YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 126
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 127 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 175

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 403 KARLQDGMEFAIKV-FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
           + R+Q  + F   V   FS  +     +VLEY   G +   L       +   R      
Sbjct: 92  EKRIQQAVNFPFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARF-YAAQ 150
Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           +    EYLH   S  +I+ DLKP N L+D      ++DFG AK + G    +  T     
Sbjct: 151 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPE--- 204
Query: 522 IGYMAP 527
             Y+AP
Sbjct: 205 --YLAP 208

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 412 FAIKVFHFSCSNEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSAL 466
           F +K+ H++   E    L+L++   G L     ++V+++   +   L  L +      AL
Sbjct: 87  FIVKL-HYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELAL------AL 139
Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           ++LH   S  II+ DLKP N LLD+     L+DFG++K     D           + YMA
Sbjct: 140 DHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMA 194
Query: 527 P 527
           P
Sbjct: 195 P 195

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 68  YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 124
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 125 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 173

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 184

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   +  +  L +   ++SA+EYL        IH
Sbjct: 76  CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIH 132
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 133 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFPIKWTAP 179

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 134
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 181

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 37/165 (22%)
Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AI+  +           NE                    
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 142
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K  N LL  +    L+DFG    +T E     +++ +    +MAP
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSEMVGTPYWMAP 185

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 139
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 186

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 82  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 138
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 139 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 185

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 412 FAIKVFHFSCSNEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSAL 466
           F +K+ H++   E    L+L++   G L     ++V+++   +   L  L +      AL
Sbjct: 88  FIVKL-HYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELAL------AL 140
Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           ++LH   S  II+ DLKP N LLD+     L+DFG++K     D           + YMA
Sbjct: 141 DHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMA 195
Query: 527 P 527
           P
Sbjct: 196 P 196

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKV--------------------------- 416
           F+    IG+GSFG V+K    R Q  +  AIK+                           
Sbjct: 9   FTKLEKIGKGSFGEVFKGIDNRTQKVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 66
Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              ++ S   +    +++EY   GS   +L      LD  Q   I+ ++   L+YLH   
Sbjct: 67  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP--LDETQIATILREILKGLDYLH--- 121
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH D+K  N LL ++    L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 122 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNXFVGTPFWMAP 173

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 134
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 181

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 136
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 183

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AI+  +           NE                    
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 142
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPE-----QSKRSXMVGTPYWMAP 185

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKV--------------------------- 416
           F+    IG+GSFG V+K    R Q  +  AIK+                           
Sbjct: 9   FTKLEKIGKGSFGEVFKGIDNRTQKVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 66
Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              ++ S   +    +++EY   GS   +L      LD  Q   I+ ++   L+YLH   
Sbjct: 67  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP--LDETQIATILREILKGLDYLH--- 121
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH D+K  N LL ++    L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 122 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 173

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 136
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
            DL   N L+ +N +  ++DFG+++L+TG+
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTGD 166

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 139
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
            DL   N L+ +N +  ++DFG+++L+TG+
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTGD 169

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V EY + GSL   L   +   L + Q +++   + S + Y+        
Sbjct: 245 YAVVSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNY 301
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 350

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           C+ E    ++ E+ T G+L   L   N   ++ +  L +   ++SA+EYL        IH
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 136
Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DL   N L+ +N +  ++DFG+++L+TG D           I + AP
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKWTAP 183

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKV--------------------------- 416
           F+    IG+GSFG V+K    R Q  +  AIK+                           
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 81
Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              ++ S   +    +++EY   GS   +L      LD  Q   I+ ++   L+YLH   
Sbjct: 82  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP--LDETQIATILREILKGLDYLH--- 136
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH D+K  N LL ++    L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 137 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNXFVGTPFWMAP 188

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 387 FSANNLIGRGSFGSVYKA---RLQDGMEFAIKV--------------------------- 416
           F+    IG+GSFG V+K    R Q  +  AIK+                           
Sbjct: 29  FTKLEKIGKGSFGEVFKGIDNRTQKVV--AIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 86
Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              ++ S   +    +++EY   GS   +L      LD  Q   I+ ++   L+YLH   
Sbjct: 87  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP--LDETQIATILREILKGLDYLH--- 141
Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           S   IH D+K  N LL ++    L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 142 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 193

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL 488
           +++EY   GS   +L +  +  D  Q   ++ ++   L+YLH   S   IH D+K  N L
Sbjct: 98  IIMEYLGGGSALDLLRAGPF--DEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVL 152
Query: 489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L +     L+DFG+A  LT  D  + +   +    +MAP
Sbjct: 153 LSEQGDVKLADFGVAGQLT--DTQIKRNTFVGTPFWMAP 189

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS-------NE-------------------- 424
           IG+G+ G+VY A  +  G E AI+  +           NE                    
Sbjct: 29  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 88
Query: 425 --DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  +IH D+
Sbjct: 89  VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 143
Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           K  N LL  +    L+DFG    +T E     Q++   ++G   +MAP
Sbjct: 144 KSDNILLGMDGSVKLTDFGFCAQITPE-----QSKRSXMVGTPYWMAP 186

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           ++  +E+   +V+EY + G L   L       L + Q +++   + S + Y+        
Sbjct: 79  YAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNY 135
Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL+  N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 184

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 34/164 (20%)
Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSNED 425
           +G+G FG V+          AIK                              ++  +E+
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE 82
Query: 426 FRALVLEYTTNGSLEKVLY-SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              +V EY   GSL   L   +   L + Q +++   + S + Y+        +H DL+ 
Sbjct: 83  PIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE---RMNYVHRDLRA 139
Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            N L+ +N+V  ++DFG+A+L+  ED   T  Q     I + AP
Sbjct: 140 ANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAP 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	527
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-29
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	9e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-13
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-26
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-26
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	7e-26
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	8e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-25
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-24
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	9e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	9e-21
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-20
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-20
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-20
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-19
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-19
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-19
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	4e-18
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-17
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-17
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-17
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	8e-17
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-17
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	5e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-16
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-15
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-15
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-15
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-15
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-15
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	5e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	6e-15
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-15
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-15
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-14
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-14
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-14
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	6e-14
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	7e-14
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	7e-14
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-14
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-13
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-13
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-13
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-13
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-13
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-13
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-13
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-13
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-13
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-13
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-13
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-13
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-13
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	5e-13
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-13
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	8e-13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-12
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-12
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-12
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-12
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	4e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-12
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	6e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	6e-12
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-12
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	6e-12
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-12
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-12
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-11
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-11
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-11
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-11
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-11
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	5e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-11
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-11
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	8e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-11
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	9e-11
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-10
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-10
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-10
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	2e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-10
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	6e-10
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-10
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	6e-10
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	8e-10
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	9e-10
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-09
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-09
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-09
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	3e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
3niz_A	311	Rhodanese family protein; structural genomics, str	6e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	9e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-08
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-08
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-08
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-08
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-08
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-08
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-08
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	3e-08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-08
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	4e-08
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	7e-08
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-08
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	8e-08
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	8e-08
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-07
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-07
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	5e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	6e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-07
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-06
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-06
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	6e-06
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	6e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-05
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	4e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-05
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-04
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-04
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  248 bits (635), Expect = 7e-74
 Identities = 89/319 (27%), Positives = 131/319 (41%), Gaps = 21/319 (6%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
             N   G +  T+ N S L    +  NY        LG LS + D L L  N L    P 
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIP- 459

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                 +   K L+ L +  N L G +P  + N + +L +I +S+  ++G I + IG L 
Sbjct: 460 ----QELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLE 514

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
           +L  + L  N  +G+I   LG  + L +L    N   G+IP  +          +  N +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFI 570

Query: 201 SGSIPTCFGNLTALRNLHLDSNELT---SIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           +G       N    +  H   N L         L  L      +  S ++ G       N
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
              +  +D S N L G IP  I  +  L  L+LGHN + GSIP+   DL  L  LDLS+N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 318 NLSEIIPLSLEKLLYLNIL 336
            L   IP ++  L  L  +
Sbjct: 691 KLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  231 bits (591), Expect = 1e-67
 Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 21/321 (6%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTSSTPE 80
           S N     +   + + S L+  D+  N +       +   + +   L++S N      P 
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK-LLNISSNQFVGPIPP 265

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                     K L+ L ++ N   G +P  +     +L  + +S  +  G +    G+ +
Sbjct: 266 -------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 141 DLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNVLCHLAV-LFQLDLRGN 198
            L S+ L  N  +G + + TL K++ L+ L    NE  G +P  L +L+  L  LDL  N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 199 KLSGSIPTCFGN--LTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKI 255
             SG I           L+ L+L +N  T  IP  L N  +++ L    N   G +PS +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
           G+L  L  +    N L G+IP  +  +K+L+ L L  N L G IP+   +  +L  + LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 316 NNNLSEIIPLSLEKLLYLNIL 336
           NN L+  IP  + +L  L IL
Sbjct: 499 NNRLTGEIPKWIGRLENLAIL 519

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  229 bits (587), Expect = 4e-67
 Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 23/321 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY------VLGRLSSIVDELSLSDNYLTSSTPEL 81
           S NK+ G   + +     L+  DV +N        LG  S++   L +S N L+      
Sbjct: 186 SGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ-HLDISGNKLSGDFS-- 240

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNLT 140
               ++S C  LK L+IS N   G +P        SL+++ +++   +G I + + G   
Sbjct: 241 ---RAISTCTELKLLNISSNQFVGPIPP--LPLK-SLQYLSLAENKFTGEIPDFLSGACD 294

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNK 199
            L  +DL GN   G++    G    L+ L+   N   G +P + L  +  L  LDL  N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 200 LSGSIPTCFGNLTA-LRNLHLDSNELT-SIPSILWN--LKDILYLDFWSNLFVGPLPSKI 255
            SG +P    NL+A L  L L SN  +  I   L       +  L   +N F G +P  +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
            N   L  +  S N L G IP+++  L  L+ L L  N L+G IP     + +LE+L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 316 NNNLSEIIPLSLEKLLYLNIL 336
            N+L+  IP  L     LN +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  227 bits (582), Expect = 2e-66
 Identities = 91/330 (27%), Positives = 139/330 (42%), Gaps = 20/330 (6%)

Query: 28  SQNKLVGIVSITIF-NLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTSSTP 79
           ++NK  G +   +     TL   D+  N+         G  S +   L+LS N  +   P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE-SLALSSNNFSGELP 335

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGN- 138
                 ++   + LK LD+S N   G LP  + N S SL  + +S  N SG I   +   
Sbjct: 336 M----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 139 -LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
               L  + L  N   G I  TL    +L  L    N L G+IP+ L  L+ L  L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
           N L G IP     +  L  L LD N+LT  IPS L N  ++ ++   +N   G +P  IG
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
            L+ L  +  S N+  G+IP  +   +SL +L L  N   G+IP +        S  ++ 
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAA 567

Query: 317 NNLSEIIPLSLEKLLYLNILLIVVVILALK 346
           N ++    + ++             +L  +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  217 bits (556), Expect = 1e-62
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 23/324 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY--------VLGRLSSIVDELSLSDNYLTSSTP 79
           S N   G V     + S L+   + +N          L ++  +   L LS N  +   P
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK-VLDLSFNEFSGELP 360

Query: 80  ELSFLSSMSNCKY-LKKLDISRNPLDGFLPRVVGNFS-QSLEFIWMSDCNISGGISEEIG 137
                 S++N    L  LD+S N   G +   +      +L+ +++ +   +G I   + 
Sbjct: 361 -----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
           N ++L+S+ L  N L+G+I  +LG L KL+ L    N LEG IP  L ++  L  L L  
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
           N L+G IP+   N T L  + L +N LT  IP  +  L+++  L   +N F G +P+++G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
           + + L  +D + N   G IP  +          +  N + G       +    +    + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 317 N--NLSEIIPLSLEKLLYLNILLI 338
           N      I    L +L   N   I
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNI 615

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  203 bits (520), Expect = 1e-57
 Identities = 86/323 (26%), Positives = 135/323 (41%), Gaps = 26/323 (8%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV---------LGRLSSIVDELSLSDNYLTSST 78
           S + + G VS      ++L   D+  N +         LG  S +   L++S N L    
Sbjct: 85  SNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK-FLNVSSNTLDFPG 142

Query: 79  PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS--QSLEFIWMSDCNISGGISEEI 136
                +S       L+ LD+S N + G              L+ + +S   ISG +   +
Sbjct: 143 K----VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V 196

Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
               +L  +D+  N  +  I   LG    LQ L   GN+L G     +     L  L++ 
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELT-SIP-SILWNLKDILYLDFWSNLFVGPLPSK 254
            N+  G IP     L +L+ L L  N+ T  IP  +      +  LD   N F G +P  
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 255 IGNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLGHNRLQGSIPNSFDDL-VSLESL 312
            G+  +L  +  S NN  G++P  T+  ++ L+ L L  N   G +P S  +L  SL +L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 313 DLSNNNLSEIIPLSLEKLLYLNI 335
           DLS+NN S  I  +L +     +
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTL 396

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  196 bits (500), Expect = 6e-55
 Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 17/281 (6%)

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWM 123
           V  + LS   L      +S  SS+ +   L+ L +S + ++G +       + SL  + +
Sbjct: 52  VTSIDLSSKPLNVGFSAVS--SSLLSLTGLESLFLSNSHINGSVSGF-KCSA-SLTSLDL 107

Query: 124 SDCNISGGISE--EIGNLTDLISIDLGGNKLNGSISITLG-KLQKLQFLSFRGNELEGSI 180
           S  ++SG ++    +G+ + L  +++  N L+    ++ G KL  L+ L    N + G+ 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 181 PNVLC---HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKD 236
                       L  L + GNK+SG +         L  L + SN  +  IP +  +   
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFL-GDCSA 224

Query: 237 ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
           + +LD   N   G     I     L  ++ S N  +G IP     LKSLQ+LSL  N+  
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282

Query: 297 GSIPNS-FDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           G IP+       +L  LDLS N+    +P        L  L
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  184 bits (469), Expect = 1e-50
 Identities = 76/305 (24%), Positives = 124/305 (40%), Gaps = 37/305 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
           S N L G +  ++ +LS L+   +  N         L  + ++   L L  N LT   P 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE-TLILDFNDLTGEIP- 483

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
               S +SNC  L  + +S N L G +P+ +G    +L  + +S+ + SG I  E+G+  
Sbjct: 484 ----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCR 538

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQ----------------------FLSFRGNELEG 178
            LI +DL  N  NG+I   + K                             +    E +G
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDI 237
                L  L+     ++      G     F N  ++  L +  N L+  IP  + ++  +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
             L+   N   G +P ++G+L+ L  +D S N L G IP  +  L  L  + L +N L G
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 298 SIPNS 302
            IP  
Sbjct: 719 PIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 7e-41
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 21/263 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-------LGRLSSIVDELSLSDNYLTSSTPE 80
             N L G +   + N + L    + NN +       +GRL ++   L LS+N  + + P 
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIP- 531

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
               + + +C+ L  LD++ N  +G +P  +   S       ++   I+G     I N  
Sbjct: 532 ----AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-----IAANFIAGKRYVYIKNDG 582

Query: 141 DLISIDLGGN--KLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
                   GN  +  G  S  L +L      +       G       +   +  LD+  N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
            LSG IP   G++  L  L+L  N+++ SIP  + +L+ +  LD  SN   G +P  +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQ 280
           L +LT ID S NNL G IP   Q
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQ 725

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (297), Expect = 4e-28
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 12/184 (6%)

Query: 161 GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLD 220
            K+  +   S   N    ++ + L  L  L  L L  + ++GS+   F    +L +L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 221 SNELT-SIPSI--LWNLKDILYLDFWSNLFVGPLP-SKIGNLKVLTRIDFSRNNLLGDIP 276
            N L+  + ++  L +   + +L+  SN    P   S    L  L  +D S N++ G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 277 TTIQ---GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL--SLEKLL 331
                  G   L+ L++  N++ G +       V+LE LD+S+NN S  IP       L 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226

Query: 332 YLNI 335
           +L+I
Sbjct: 227 HLDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 3e-25
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 10/163 (6%)

Query: 183 VLCHLAVLFQLDLRGNKLS---GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILY 239
           V C    +  +DL    L+    ++ +   +LT L +L L ++ +    S       +  
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 240 LDFWSNLFVGPLPSK--IGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQ 296
           LD   N   GP+ +   +G+   L  ++ S N L      +    L SL+ L L  N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 297 GSIPNSFDD---LVSLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
           G+    +        L+ L +S N +S  + +S    L +L++
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV 207

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 7e-23
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 26/211 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELS--LSDNYLTSSTPEL---- 81
           S N   G +   + +  +L   D++ N   G + + + + S  ++ N++           
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

Query: 82  -----------------SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMS 124
                                 ++        +I+     G       N   S+ F+ MS
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMS 640

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
              +SG I +EIG++  L  ++LG N ++GSI   +G L+ L  L    N+L+G IP  +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 185 CHLAVLFQLDLRGNKLSGSIPTC--FGNLTA 213
             L +L ++DL  N LSG IP    F     
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  216 bits (553), Expect = 2e-66
 Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 13/270 (4%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDG--FLPRVVGNFSQS 117
           LSS +      +              + +    +  LD+S   L     +P  + N    
Sbjct: 24  LSSWLPTTDCCNRTWLGVLC-----DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-Y 77

Query: 118 LEFIWMSDCN-ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNEL 176
           L F+++   N + G I   I  LT L  + +    ++G+I   L +++ L  L F  N L
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 177 EGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL-RNLHLDSNELT-SIPSILWNL 234
            G++P  +  L  L  +   GN++SG+IP  +G+ + L  ++ +  N LT  IP    NL
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNR 294
             + ++D   N+  G      G+ K   +I  ++N+L  D+   +   K+L  L L +NR
Sbjct: 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 295 LQGSIPNSFDDLVSLESLDLSNNNLSEIIP 324
           + G++P     L  L SL++S NNL   IP
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  213 bits (546), Expect = 2e-65
 Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 12/265 (4%)

Query: 81  LSFLSSMSNCKYL----KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISG--GISE 134
           L     + N   L       D       G L       +  +  + +S  N+     I  
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70

Query: 135 EIGNLTDLISIDLGG-NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQL 193
            + NL  L  + +GG N L G I   + KL +L +L      + G+IP+ L  +  L  L
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDIL-YLDFWSNLFVGPL 251
           D   N LSG++P    +L  L  +  D N ++ +IP    +   +   +    N   G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
           P    NL  L  +D SRN L GD        K+ Q + L  N L   +        +L  
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNIL 336
           LDL NN +   +P  L +L +L+ L
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSL 273

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (513), Expect = 1e-60
 Identities = 72/258 (27%), Positives = 120/258 (46%), Gaps = 10/258 (3%)

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDIS-RNPLDGFLPRVVGNFSQSLEFIW 122
           V+ L LS   L    P     SS++N  YL  L I   N L G +P  +   +Q L +++
Sbjct: 52  VNNLDLSGLNLPKPYP---IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLY 107

Query: 123 MSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPN 182
           ++  N+SG I + +  +  L+++D   N L+G++  ++  L  L  ++F GN + G+IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 183 VLCHLAVLFQ-LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYL 240
                + LF  + +  N+L+G IP  F NL  L  + L  N L      +  + K+   +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
               N     L   +G  K L  +D   N + G +P  +  LK L  L++  N L G IP
Sbjct: 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 301 NSFDDLVSLESLDLSNNN 318
               +L   +    +NN 
Sbjct: 286 QGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (443), Expect = 2e-50
 Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 22/285 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV---------LGRLSSIVDELSLSD-NYLTSS 77
                +G++  T      +   D+    +         L  L  +   L +   N L   
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN-FLYIGGINNLVGP 92

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG 137
            P      +++    L  L I+   + G +P  +      L  +  S   +SG +   I 
Sbjct: 93  IP-----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSIS 146

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKL-QFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
           +L +L+ I   GN+++G+I  + G   KL   ++   N L G IP    +L  L  +DL 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSNLFVGPLPSKI 255
            N L G     FG+    + +HL  N L   +   +   K++  LD  +N   G LP  +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
             LK L  ++ S NNL G+IP     L+     +  +N+     P
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (364), Expect = 4e-39
 Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 29/229 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           +   + G +   +  + TL                    L  S N L+ + P      S+
Sbjct: 109 THTNVSGAIPDFLSQIKTLVT------------------LDFSYNALSGTLP-----PSI 145

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
           S+   L  +    N + G +P   G+FS+    + +S   ++G I     NL +L  +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204

Query: 148 GGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTC 207
             N L G  S+  G  +  Q +    N L   +   +     L  LDLR N++ G++P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 208 FGNLTALRNLHLDSNELT-SIPSILWNLKDILYLDFWSN--LFVGPLPS 253
              L  L +L++  N L   IP    NL+      + +N  L   PLP+
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 9e-31
 Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 4/149 (2%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT---SIPSILWNLKDILYLDFWS-NLFV 248
            D       G +         + NL L    L     IPS L NL  + +L     N  V
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS 308
           GP+P  I  L  L  +  +  N+ G IP  +  +K+L  L   +N L G++P S   L +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 309 LESLDLSNNNLSEIIPLSLEKLLYLNILL 337
           L  +    N +S  IP S      L   +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSM 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (464), Expect = 2e-50
 Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 28/314 (8%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN-------YVLGRLSSIVDELSLSDNYLTSSTPE 80
           S   L  I   +   L  L+  ++++N        +   L ++   LSLS+++ +  T  
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSNSFTSLRTLT 371

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGIS-EEIGNL 139
                S+++   L  L++++N +              LE + +    I   ++ +E   L
Sbjct: 372 NETFVSLAH-SPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGL 429

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG--SIPNVLCHLAVLFQLDLRG 197
            ++  I L  NK       +   +  LQ L  R   L+   S P+    L  L  LDL  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           N ++         L  L  L L  N L  +               W +   G     +  
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARL---------------WKHANPGGPIYFLKG 534

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
           L  L  ++   N          + L  L+ + LG N L     + F++ VSL+SL+L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 318 NLSEIIPLSLEKLL 331
            ++ +         
Sbjct: 595 LITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (436), Expect = 2e-46
 Identities = 65/325 (20%), Positives = 119/325 (36%), Gaps = 31/325 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
             N +  + S ++  L  ++  ++  ++          + S+S   L           S 
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFT---------KQSISLASLPKIDD-----FSF 325

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG----NLTDLI 143
              K L+ L++  N + G    +      +L+++ +S+   S              + L 
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSG 202
            ++L  NK++   S     L  L+ L    NE+   +       L  +F++ L  NK   
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 203 SIPTCFGNLTALRNLHLDSNELTSI---PSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
                F  + +L+ L L    L ++   PS    L+++  LD  +N         +  L+
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 260 VLTRIDFSRNNL--------LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
            L  +D   NNL         G     ++GL  L  L+L  N         F DL  L+ 
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNIL 336
           +DL  NNL+ +        + L  L
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  165 bits (419), Expect = 3e-44
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 33/336 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
             N+L  +   T    + L    + +N           +  +++  L LS N L+S+   
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI-TLDLSHNGLSSTKL- 138

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ-SLEFIWMSDCNISGGISEEIGNL 139
                +    + L++L +S N +       +  F+  SL+ + +S   I          +
Sbjct: 139 ----GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 140 TDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEGSIPNVLCHLAV--LFQLD 194
             L  + L   +L  S++  L        ++ LS   ++L  +       L    L  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPL-- 251
           L  N L+      F  L  L    L+ N +  +    L  L ++ YL+   +     +  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 252 -------PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS--IPNS 302
                        LK L  ++   N++ G       GL +L++LSL ++          +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 303 FDDLV--SLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           F  L    L  L+L+ N +S+I   +   L +L +L
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (416), Expect = 7e-44
 Identities = 65/318 (20%), Positives = 120/318 (37%), Gaps = 31/318 (9%)

Query: 43  LSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKK 95
            + + V ++ +N           R S +   L +  N ++   PE            LK 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLT-SLDVGFNTISKLEPE-----LCQKLPMLKV 77

Query: 96  LDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS 155
           L++  N L     +     + +L  + +   +I    +       +LI++DL  N L+ +
Sbjct: 78  LNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 156 ISITLGKLQKLQFLSFRGNELEGSIPNVL--CHLAVLFQLDLRGNKLSGSIPTCFGNLTA 213
              T  +L+ LQ L    N+++      L     + L +L+L  N++    P CF  +  
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 214 LRNLHLDSNELTSIP----SILWNLKDILYLDFWSNLFVGPLPSKIGNLKV--LTRIDFS 267
           L  L L++ +L         +      I  L   ++       +    LK   LT +D S
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN---------N 318
            NNL      +   L  L++  L +N +Q    +S   L ++  L+L  +         +
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 319 LSEIIPLSLEKLLYLNIL 336
           L +I   S + L  L  L
Sbjct: 317 LPKIDDFSFQWLKCLEHL 334

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (386), Expect = 9e-40
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 10/250 (4%)

Query: 92  YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNK 151
             +  D S   L     +V  +   ++  + ++   +    +      + L S+D+G N 
Sbjct: 5   SHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 152 LNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNL 211
           ++        KL  L+ L+ + NEL             L +L L  N +       F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 212 TALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLK--VLTRIDFSR 268
             L  L L  N L+S        L+++  L   +N        ++       L +++ S 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF---DDLVSLESLDLSNNNLSEIIPL 325
           N +    P     +  L  L L + +L  S+           S+ +L LSN+ LS     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 326 SLEKLLYLNI 335
           +   L + N+
Sbjct: 241 TFLGLKWTNL 250

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.5 bits (246), Expect = 7e-22
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
            +       +L     ++  ++ VL   +L  N+L       F   + L +L +  N ++
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSL 285
            +                        P     L +L  ++   N L      T     +L
Sbjct: 63  KLE-----------------------PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 286 QFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
             L L  N +Q    N F    +L +LDLS+N LS     +  +L  L  L
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 23/216 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY---------VLGRLSSIVDELSLSDNYLTSST 78
           S NK + +   +   + +L+   +                 L ++   L LS+N + +  
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANIN 496

Query: 79  PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS-------QSLEFIWMSDCNISGG 131
            ++     +   + L+ LD+  N L                     L  + +        
Sbjct: 497 DDM-----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 132 ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCH-LAVL 190
             E   +L +L  IDLG N LN   +        L+ L+ + N +      V       L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 191 FQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS 226
            +LD+R N    +  +    +  +   H +  EL+S
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (450), Expect = 1e-48
 Identities = 54/346 (15%), Positives = 121/346 (34%), Gaps = 46/346 (13%)

Query: 35  IVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFL-SSMSNCKYL 93
           +      + S L    ++++     +      ++L D  +   +  ++F+  ++     L
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 94  KKLDISRNPLDGFLPRVVGNFS------------------QSLEFIWMSDCNISGGISEE 135
           ++  +  +P                               + L  + + +C     +   
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 136 IGNLTDLISIDLGGNKL--------NGSISITLGKLQKLQFLSFRGNEL-EGSIPNVLCH 186
           +  L ++  I++  N+         +          +K+Q +    N L    +   L  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 187 LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSN 245
           +  L  L+   N+L G +P  FG+   L +L+L  N++T IP +     + +  L F  N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 246 LFVG-PLPSKIGNLKVLTRIDFSRNNL-------LGDIPTTIQGLKSLQFLSLGHNRLQG 297
                P      ++ V++ IDFS N +          +  T     ++  ++L +N++  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEI-------IPLSLEKLLYLNIL 336
                F     L S++L  N L+EI          + +    L  +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 3e-48
 Identities = 58/345 (16%), Positives = 109/345 (31%), Gaps = 44/345 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY---------VLGRLSSIVD-----ELSLSDNY 73
                +  +   +  L  +++ +V  N              L+          + +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 74  LTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGIS 133
           L +   E S        K L  L+   N L+G LP   G+    L  + ++   I+   +
Sbjct: 317 LKTFPVETSL----QKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQITEIPA 370

Query: 134 EEIGNLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEG-------SIPNVLC 185
              G    + ++    NKL           +  +  + F  NE+          +     
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP--------SILWNLKDI 237
               +  ++L  N++S      F   + L +++L  N LT IP            N   +
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 238 LYLDFWSNLFVG-PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH---- 292
             +D   N         +   L  L  ID S  N     PT      +L+   + +    
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLS-YNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 293 --NRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
             NR     P       SL  L + +N++ ++       +  L+I
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (441), Expect = 2e-47
 Identities = 52/349 (14%), Positives = 116/349 (33%), Gaps = 51/349 (14%)

Query: 28  SQNKLVGIVSIT--------IFNLSTLKVFDVDNN--------YVLGRLSSIVDELSLSD 71
           + N+ +    +               +++  +  N          L ++  +   L    
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG-MLECLY 339

Query: 72  NYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISG- 130
           N L    P         +   L  L+++ N +   +P     F++ +E +  +   +   
Sbjct: 340 NQLEGKLPAFG------SEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYI 392

Query: 131 GISEEIGNLTDLISIDLGGNKLNG-------SISITLGKLQKLQFLSFRGNELEGSIPNV 183
               +  +++ + +ID   N++          +  T  K   +  ++   N++      +
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 184 LCHLAVLFQLDLRGNKLSG-------SIPTCFGNLTALRNLHLDSNELTSIPS--ILWNL 234
               + L  ++L GN L+             F N   L ++ L  N+LT +        L
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRI------DFSRNNLLGDIPTTIQGLKSLQFL 288
             ++ +D   N F    P++  N   L         D   N  L + P  I    SL  L
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 289 SLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILL 337
            +G N ++  +        ++  LD+ +N    I    +   +   + +
Sbjct: 572 QIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (409), Expect = 4e-43
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 55/342 (16%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
                 G V   I  L+ L+V                  L+L  +    +   L     +
Sbjct: 89  EGFGASGRVPDAIGQLTELEV------------------LALGSHGEKVNER-LFGPKGI 129

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQS-LEFIWMSDCNISGGISEEIGNLTDLISID 146
           S     ++    R                S L    ++       I +          I 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 147 LGGNKLNGSISITLGKLQKLQFLSFRGNELEG-------------------SIPNVLCHL 187
              N +   +S  + +L KL+      +                       +      +L
Sbjct: 190 QLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI---------LWNLKDIL 238
             L  +++        +PT    L  ++ +++  N   S   +             + I 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 239 YLDFWSN-LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
            +    N L   P+ + +  +K L  ++   N L G +P        L  L+L +N++  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPL----SLEKLLYLNI 335
              N       +E+L  ++N L  I  +    S+  +  ++ 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  147 bits (373), Expect = 3e-38
 Identities = 42/295 (14%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 57  LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDG----FLPRVVG 112
           L     +   LSL     +   P      ++     L+ L +  +        F P+ + 
Sbjct: 77  LNSNGRVT-GLSLEGFGASGRVP-----DAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 113 NFSQSLEFIWMSDCNISGGISEEIG--NLTDLISIDLGGNKLNGSISITLGKLQKLQFLS 170
             + S E       +      +     + +DLI   +  +    SI  +     K   + 
Sbjct: 131 A-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI 230
              N +   +   +  L  L Q  +  +                           +    
Sbjct: 190 QLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLK 244

Query: 231 LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLL--------GDIPTTIQGL 282
             NLKD+  ++ ++   +  LP+ +  L  +  I+ + N  +                  
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 283 KSLQFLSLGHNRLQ-GSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           + +Q + +G+N L+   +  S   +  L  L+   N L   +P +    + L  L
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (335), Expect = 3e-33
 Identities = 51/307 (16%), Positives = 93/307 (30%), Gaps = 38/307 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
             N+L G +     +   L   ++  N          G    +   LS + N L      
Sbjct: 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE-NLSFAHNKLKY---- 391

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS------QSLEFIWMSDCNISGGISE 134
           +  +    +   +  +D S N +     +             ++  I +S+  IS    E
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 135 EIGNLTDLISIDLGGNKLNG-------SISITLGKLQKLQFLSFRGNELEGSIPNV-LCH 186
                + L SI+L GN L           +        L  +  R N+L     +     
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 187 LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE-------LTSIPSILWNLKDILY 239
           L  L  +DL  N  S   PT   N + L+   + +         L   P  +     +  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 240 LDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI 299
           L   SN     +  KI     ++ +D   N  +    + +          L +++ Q   
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

Query: 300 PNSFDDL 306
                D+
Sbjct: 628 GCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (301), Expect = 7e-29
 Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 37/245 (15%)

Query: 124 SDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG----S 179
                       + +   +  + L G   +G +   +G+L +L+ L+   +  +      
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 180 IPNVLCHLAVLFQLDLRGNKLSG--------------------------SIPTCFGNLTA 213
            P  +       Q                                    SI         
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
              +   SN +T +   +  L  +      ++ FV     +    +              
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYK 239

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI--IPLSLEKLL 331
                   LK L  + + +      +P     L  ++ ++++ N       +    + L 
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 332 YLNIL 336
              + 
Sbjct: 300 DAPVG 304

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 9/173 (5%)

Query: 178 GSIPNVLCH-LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN-----ELTSIPSIL 231
           G+ P V  +    +  L L G   SG +P   G LT L  L L S+     E    P  +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 232 WNLKDILYLDFWSNLFVGPLPSKIGNLKV--LTRIDFSRNNLLGDIPTTIQGLKSLQFLS 289
                          +               L +   + +     I  + +       + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 290 LGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVI 342
              N +   +  +   L  L    + N+           +             
Sbjct: 190 QLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (410), Expect = 1e-42
 Identities = 56/348 (16%), Positives = 113/348 (32%), Gaps = 51/348 (14%)

Query: 28  SQNKLVGIVSI---------TIFNLSTLKVFDVDNN--------YVLGRLSSIVDELSLS 70
           + N+ +    +                +++F +  N          L ++  +   L   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG-LLDCV 581

Query: 71  DNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISG 130
            N +         L +      L  L +  N ++  +P     F+  +E +  S   +  
Sbjct: 582 HNKVRH-------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 131 -GISEEIGNLTDLISIDLGGNKL-----NGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
                   ++  + S+D   NK+     N S S+   K      ++   NE++     + 
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 185 CHLAVLFQLDLRGNKLS-------GSIPTCFGNLTALRNLHLDSNELTSIPS--ILWNLK 235
              + +  + L  N ++             + N   L  + L  N+LTS+        L 
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 236 DILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR------NNLLGDIPTTIQGLKSLQFLS 289
            +  +D   N F    P++  N   L             N +L   PT I    SL  L 
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 290 LGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILL 337
           +G N ++  +         L  LD+++N    I   S+   +   + +
Sbjct: 813 IGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (403), Expect = 1e-41
 Identities = 55/348 (15%), Positives = 102/348 (29%), Gaps = 52/348 (14%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY----------------VLGRLSSIVDELSLSD 71
                +  +   +++L  L+  ++  N                        I     +  
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGY 557

Query: 72  NYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNIS 129
           N L       S          L  LD   N +     R +  F     L  + +    I 
Sbjct: 558 NNLEEFPASASL----QKMVKLGLLDCVHNKV-----RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 130 GGISEEIG-NLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
             I E+       +  +    NKL           +  +  + F  N++     N+ C +
Sbjct: 609 E-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 188 AV-----LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS--------ILWNL 234
                     + L  N++       F   + +  + L +N +TSIP            N 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 235 KDILYLDFWSNLFVG-PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH- 292
             +  +D   N         +   L  L+ +D S  N     PT       L+   + H 
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS-YNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 293 -----NRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
                NR+    P       SL  L + +N++ ++      +L  L+I
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 4e-39
 Identities = 44/355 (12%), Positives = 105/355 (29%), Gaps = 34/355 (9%)

Query: 7   NNRQLDGGMTGDVCYRICTIDSQNKLV--GIVSITIFNLSTLKVFDVDNNYVLGRLSSIV 64
           ++  + G + GD        + +   +      + +     L + D+  + +        
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 65  ----DELSLSDNYLTSSTPELSFL-SSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
                 +SL D  + + T  ++F+  ++     L+ +  + +P       V        E
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV------DWE 470

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG- 178
                             NL DL  ++L        +   L  L +LQ L+   N     
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 179 --------SIPNVLCHLAVLFQLDLRGNKLSG-SIPTCFGNLTALRNLHLDSNELTSIPS 229
                    + +       +    +  N L           +  L  L    N++  + +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

Query: 230 ILWNLKDILYLDFWSNLFVGPLPSKIG-NLKVLTRIDFSRNNLLGDIPTT--IQGLKSLQ 286
                  +  L    N     +P         +  + FS +N L  IP     + +  + 
Sbjct: 591 F-GTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFS-HNKLKYIPNIFNAKSVYVMG 647

Query: 287 FLSLGHNRLQGSIPNSFDDL-----VSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            +   +N++     N    +     ++  ++ LS N + +           ++ +
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  147 bits (373), Expect = 6e-38
 Identities = 57/356 (16%), Positives = 108/356 (30%), Gaps = 44/356 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY------VLGRLSSIVDELSLSDNYLTSSTPEL 81
           +     G V   I  L+ LKV     +       + G      D      + +     ++
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 82  SFLSSMS-NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                   N   L +  I+RNP    + +      +  +   ++  N    IS+ I  LT
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLT 448

Query: 141 DLISIDLGGNKLNG-------------------SISITLGKLQKLQFLSFRGNELEGSIP 181
            L  I    +                       +  ++   L+ L  +          +P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 182 NVLCHLAVLFQLDLRGNKLSG---------SIPTCFGNLTALRNLHLDSNELTSIPS--I 230
           + L  L  L  L++  N+             +         ++  ++  N L   P+   
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 231 LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSL 290
           L  +  +  LD   N     L +  G    LT +    N +             ++ L  
Sbjct: 569 LQKMVKLGLLDCVHNKVRH-LEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 291 GHNRLQGSIPNSFD--DLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA 344
            HN+L+  IPN F+   +  + S+D S N +          +     +    V L+
Sbjct: 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  142 bits (360), Expect = 4e-36
 Identities = 56/344 (16%), Positives = 107/344 (31%), Gaps = 38/344 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRL-SSIVD-----ELSLSDNYLTSSTPEL 81
              K      ++  NL  L   ++ N   + +L   + D      L+++ N   S+    
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 82  SFLSSM----SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG 137
           +  + +         ++   +  N L+ F           L  +      +     E  G
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFG 592

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNV--LCHLAVLFQLDL 195
               L  + L  N++            +++ L F  N+L+  IPN+     + V+  +D 
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651

Query: 196 RGNKLSGSIPTCFG-----NLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLF-- 247
             NK+                     + L  NE+   P  +      I  +   +NL   
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 248 -----VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ--GLKSLQFLSLGHNRLQGSIP 300
                + P      N  +LT ID   N L   +    +   L  L  + + +N    S P
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS-SFP 769

Query: 301 NSFDDLVSLESLDL------SNNNLSEIIPLSLEKLLYLNILLI 338
               +   L++  +        N +    P  +     L  L I
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 1e-29
 Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 37/305 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV------LGRLSSIVDELSLSDNYLTSSTPEL 81
             NK+  + +        L    +D N +          +  V+ L  S N L       
Sbjct: 581 VHNKVRHLEAFG--TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ----SLEFIWMSDCNISGGISEEIG 137
           +      +   +  +D S N +      +  +       +   + +S   I    +E   
Sbjct: 639 NA----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 138 NLTDLISIDLGGNKL-------NGSISITLGKLQKLQFLSFRGNELEGSIPN--VLCHLA 188
             + + +I L  N +                    L  +  R N+L  S+ +      L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE-------LTSIPSILWNLKDILYLD 241
            L  +D+  N  S S PT   N + L+   +           L   P+ +     ++ L 
Sbjct: 754 YLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 242 FWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
             SN     +  K+     L  +D + N  +    T++          L +++ Q     
Sbjct: 813 IGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

Query: 302 SFDDL 306
               +
Sbjct: 870 DALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (294), Expect = 7e-28
 Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 13/275 (4%)

Query: 62  SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLD--GFLPRVVGNFSQSLE 119
            I D  +L   +         + S   N             LD  G  P V  + +  + 
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
            + ++     G + + IG LT+L  +  G +    S  +   +         R + +   
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 180 IPN-VLCHLAVLFQLDLRGNKLSG---SIPTCFGNLTALRNLHLD--SNELTSIPSILWN 233
                L +   L   DL  + ++      P    +  +L++  +   +N +T I   +  
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 234 LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN 293
           L  +  + F ++ F     +           +        +   +   LK L  + L + 
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE 328
                +P+   DL  L+SL+++ N       L  +
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 5e-26
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 13/218 (5%)

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
                    ++ N   +  + L G    G +   +G+L +L+ LSF  +    S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGN-------LTALRNLHLDSNELTSIPSILWNLKDIL 238
                   + R +++       F +          L++    + E+  I           
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
            +   +N     +   I  L  L  I F+ +    D           +  +  + +   +
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYEN 482

Query: 299 IPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
              S+ +L  L  ++L N      +P  L  L  L  L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 4e-18
 Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 10/173 (5%)

Query: 174 NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--L 231
           +         L +   +  L L G    G +P   G LT L+ L   ++  T    +   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 232 WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLG 291
             L   +  +    + +      +   + L   D  ++ +  +    ++ +K    +SL 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLK 426

Query: 292 HNRLQG------SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
             ++         I  +   L  L+ +  +N+  +        +    +    
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 6/189 (3%)

Query: 155 SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL 214
           S ++   KL K   +  +  E    I +     A+   LD +  +          +    
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302

Query: 215 RNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
            N + + +     P + L N   +  L        G +P  IG L  L  + F  ++   
Sbjct: 303 -NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSF-DDLVSLESLDLSNNNLS---EIIPLSLEK 329
                     +        +R++      F D    L   DL  + ++   E+ P+  + 
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 330 LLYLNILLI 338
            + L    I
Sbjct: 422 RISLKDTQI 430

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  159 bits (403), Expect = 2e-42
 Identities = 65/320 (20%), Positives = 106/320 (33%), Gaps = 28/320 (8%)

Query: 26  IDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD---------ELSLSDNYLTS 76
             ++  L       +  L  L + +    Y+   L  I+D           SL    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 77  STPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI 136
                S+          + L++       F    + +  + L F      +  GG +   
Sbjct: 297 VKD-FSYNFG------WQHLELVNCKFGQFPTLKLKSL-KRLTF-----TSNKGGNAFSE 343

Query: 137 GNLTDLISIDLGGNKLN--GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD 194
            +L  L  +DL  N L+  G  S +      L++L    N +   + +    L  L  LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 195 LRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPL- 251
            + + L        F +L  L  L +           I   L  +  L    N F     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
           P     L+ LT +D S+  L    PT    L SLQ L++ HN         +  L SL+ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 312 LDLSNNNLSEIIPLSLEKLL 331
           LD S N++       L+   
Sbjct: 523 LDYSLNHIMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (379), Expect = 4e-39
 Identities = 62/343 (18%), Positives = 117/343 (34%), Gaps = 38/343 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTPE 80
           S N +  I     F    L    + NN+    +           +   L      +    
Sbjct: 185 SLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 81  LSF-LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS--QSLEFIWMSDCNISGGISEEIG 137
             F  S++     L   +     LD +L  ++  F+   ++    +    I     ++  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFS 301

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNEL--------------------- 176
                  ++L   K     ++ L  L++L F S +G                        
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 177 EGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI--PSILWNL 234
           +G           L  LDL  N +   + + F  L  L +L    + L  +   S+  +L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI-PTTIQGLKSLQFLSLGHN 293
           ++++YLD                L  L  +  + N+   +  P     L++L FL L   
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           +L+   P +F+ L SL+ L++S+NN   +     + L  L +L
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 5e-36
 Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 16/308 (5%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
               +  +   +       +  ++ N     +          S   LT ++ +     S 
Sbjct: 290 VSVTIERVKDFS--YNFGWQHLELVNC----KFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 88  SNCKYLKKLDISRNPLD--GFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI 145
            +   L+ LD+SRN L   G   +     + SL+++ +S   +   +S     L  L  +
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 146 DLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI 204
           D   + L           L+ L +L         +   +   L+ L  L + GN    + 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 205 PTC-FGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
               F  L  L  L L   +L  + P+   +L  +  L+   N F          L  L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 263 RIDFSRNNLLGDIPTTIQGL-KSLQFLSLGHNRLQGSIPNS--FDDLVSLESLDLSNNNL 319
            +D+S N+++      +Q    SL FL+L  N    +  +      +     L +    +
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 320 SEIIPLSL 327
               P   
Sbjct: 582 ECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (353), Expect = 1e-35
 Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 33/331 (9%)

Query: 44  STLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
            + K  D+  N               +   L LS   + +         +  +  +L  L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQTIEDG-----AYQSLSHLSTL 81

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNG-S 155
            ++ NP+           S SL+ +   + N++   +  IG+L  L  +++  N +    
Sbjct: 82  ILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 156 ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLA----VLFQLDLRGNKLSGSIPTCFGNL 211
           +      L  L+ L    N+++      L  L     +   LDL  N ++   P  F  +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 212 TALRNLHLDSNELT--SIPSILWNLKDILYLDFWSNLFVG------PLPSKIGNLKVLTR 263
             L  L L +N  +   + + +  L  +         F           S +  L  LT 
Sbjct: 201 R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 264 IDFSRNNL---LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
            +F    L   L DI      L ++   SL    ++     S+      + L+L N    
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG 317

Query: 321 EIIPLSLEKLLYLNILLIVVVILALKFGLIS 351
           +   L L+ L  L            +  L S
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (353), Expect = 1e-35
 Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
             ++  N   S + + +S   +    S    +  +L  +DL   ++          L  L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS 226
             L   GN ++         L+ L +L      L+       G+L  L+ L++  N + S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 227 --IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT----RIDFSRNNLLGDIPTTIQ 280
             +P    NL ++ +LD  SN       + +  L  +      +D S N +    P   +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 281 GLKSLQFLSLGHNRLQGSIP-NSFDDLVSLESLDLSNN------NLSEIIPLSLEKLLYL 333
            +  L  L+L +N    ++       L  LE   L         NL +    +LE L  L
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 334 NIL 336
            I 
Sbjct: 258 TIE 260

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  150 bits (382), Expect = 2e-41
 Identities = 61/204 (29%), Positives = 84/204 (41%), Gaps = 35/204 (17%)

Query: 356 RATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIK 415
            +      S+        R    +L  AT+ F    LIG G FG VYK  L+DG + A+K
Sbjct: 10  NSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69

Query: 416 VFHFS-----------------------------CSNEDFRALVLEYTTNGSLEKVLYSS 446
                                             C   +   L+ +Y  NG+L++ LY S
Sbjct: 70  RRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGS 129

Query: 447 NYILDIL---QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA 503
           +     +   QRL I I     L YLH      IIH D+K  N LLD+N V  ++DFGI+
Sbjct: 130 DLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGIS 186

Query: 504 KLLTGEDQSMTQTQTLAIIGYMAP 527
           K  T  DQ+   T     +GY+ P
Sbjct: 187 KKGTELDQTHLSTVVKGTLGYIDP 210

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  156 bits (397), Expect = 2e-41
 Identities = 62/324 (19%), Positives = 120/324 (37%), Gaps = 22/324 (6%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
           + N L+ +    +     LK                L    ++   L L  N+++S    
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE-SLYLGSNHISSIKL- 146

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ-SLEFIWMSDCNISGGISEEIGNL 139
                     + LK LD   N +       + +  Q +   + ++  +I+G I     + 
Sbjct: 147 ----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDS 201

Query: 140 TDLISIDLGGNKLNGSI--SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV--LFQLDL 195
               S++ GG +    I   +    +Q L   +F   + E   P V   L    +  ++L
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 196 RGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKI 255
           + +         F   + L+ L L +  L+ +PS L  L  +  L   +N F        
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 256 GNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLGHNRLQGS--IPNSFDDLVSLESL 312
            N   LT +    N    ++ T  ++ L++L+ L L H+ ++ S        +L  L+SL
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 313 DLSNNNLSEIIPLSLEKLLYLNIL 336
           +LS N    +   + ++   L +L
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (389), Expect = 2e-40
 Identities = 65/321 (20%), Positives = 116/321 (36%), Gaps = 17/321 (5%)

Query: 25  TIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFL 84
            I    K   I S+ +     +   D+      G     V+ ++L  +Y  + +      
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN---- 272

Query: 85  SSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLIS 144
            +      L++LD++   L   LP  +   S +L+ + +S             N   L  
Sbjct: 273 -TFHCFSGLQELDLTATHLSE-LPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 145 IDLGGNKLNGSI-SITLGKLQKLQFLSFRGNELEGS--IPNVLCHLAVLFQLDLRGNKLS 201
           + + GN     + +  L  L+ L+ L    +++E S      L +L+ L  L+L  N+  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 202 GSIPTCFGNLTALRNLHLDSNELTSI--PSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
                 F     L  L L    L      S   NL  +  L+   +L           L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 260 VLTRIDFSRNNLLGDI---PTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
            L  ++   N+          ++Q L  L+ L L    L     ++F  L  +  +DLS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 317 NNLSEIIPLSLEKL--LYLNI 335
           N L+     +L  L  +YLN+
Sbjct: 510 NRLTSSSIEALSHLKGIYLNL 530

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (385), Expect = 6e-40
 Identities = 75/310 (24%), Positives = 122/310 (39%), Gaps = 18/310 (5%)

Query: 37  SITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
           S+   NL     F++ +N      S +  EL L+  +L+     L  LS+      LKKL
Sbjct: 255 SVESINLQKHYFFNISSN-TFHCFSGLQ-ELDLTATHLSELPSGLVGLST------LKKL 306

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE-IGNLTDLISIDLGGNKLNGS 155
            +S N  +        NF  SL  + +        +    + NL +L  +DL  + +  S
Sbjct: 307 VLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 156 --ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLT 212
              ++ L  L  LQ L+   NE              L  LDL   +L      + F NL 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 213 ALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRI---DFSR 268
            L+ L+L  + L      +   L  + +L+   N F      K  +L+ L R+     S 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE 328
            +L          LK +  + L HNRL  S   +   L  +  L+L++N++S I+P  L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 329 KLLYLNILLI 338
            L     + +
Sbjct: 545 ILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (381), Expect = 2e-39
 Identities = 65/325 (20%), Positives = 119/325 (36%), Gaps = 22/325 (6%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD--------ELSLSDNYLTSSTP 79
           + N + GI     F+ +  +  +      L  +   +           +  D      +P
Sbjct: 187 NGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
            +       +   ++ +++ ++            FS  L+ + ++  ++S  +   +  L
Sbjct: 246 AVFEGLCEMS---VESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLSE-LPSGLVGL 300

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI-PNVLCHLAVLFQLDLRGN 198
           + L  + L  NK      I+      L  LS +GN     +    L +L  L +LDL  +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 199 KL--SGSIPTCFGNLTALRNLHLDSNELTSIPSILW-NLKDILYLDFWSNLFVG-PLPSK 254
            +  S        NL+ L++L+L  NE  S+ +  +     +  LD            S 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI---PNSFDDLVSLES 311
             NL +L  ++ S + L         GL +LQ L+L  N          NS   L  LE 
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNIL 336
           L LS  +LS I   +   L  +N +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHV 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (344), Expect = 2e-34
 Identities = 52/308 (16%), Positives = 102/308 (33%), Gaps = 23/308 (7%)

Query: 43  LSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKK 95
            ++ +  +   N           RL ++   L L+   +     + +F     +   L  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLT-FLDLTRCQIYWIHED-TF----QSQHRLDT 85

Query: 96  LDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS 155
           L ++ NPL       +     +L+ ++     IS      + N   L S+ LG N ++  
Sbjct: 86  LVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 156 ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVL--FQLDLRGNKLSGSIPTCFGNLTA 213
                   +KL+ L F+ N +       +  L       L+L GN ++  I     +   
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAV 203

Query: 214 LRNLHLDSNELTSIP---SILWNLKDILYLDFWSNLFVGPLPSKIGNLKV--LTRIDFSR 268
            ++L+    +   +         ++ +    F         P+    L    +  I+  +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE 328
           +        T      LQ L L    L   +P+    L +L+ L LS N    +  +S  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 329 KLLYLNIL 336
               L  L
Sbjct: 323 NFPSLTHL 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 3e-32
 Identities = 66/304 (21%), Positives = 112/304 (36%), Gaps = 19/304 (6%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTPE 80
           S NK   +  I+  N  +L    +  N     L +          EL LS + + +S   
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNL 139
              L ++S+   L+ L++S N                LE + ++   +    ++    NL
Sbjct: 369 NLQLRNLSH---LQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI---PNVLCHLAVLFQLDLR 196
             L  ++L  + L+ S       L  LQ L+ +GN          N L  L  L  L L 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
              LS      F +L  + ++ L  N LTS      +    +YL+  SN     LPS + 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
            L     I+  +N L      +      L++      +L+ +     ++   L  + LS+
Sbjct: 545 ILSQQRTINLRQNPLDCTC--SNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSD 600

Query: 317 NNLS 320
             LS
Sbjct: 601 VTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (320), Expect = 2e-31
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 8/249 (3%)

Query: 94  KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLN 153
           K  +     L+     + G    S E +  S   +    +     L +L  +DL   ++ 
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 154 GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTA 213
                T     +L  L    N L       L     L  L      +S        N   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 214 LRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS-RNNL 271
           L +L+L SN ++SI     +  + +  LDF +N         + +L+  T +  +   N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 272 LGDIPTTIQGLKSLQFLSLGHNRLQGSIPN--SFDDLVSLESLDLSNNNLSEIIPLSLEK 329
           +  I          Q L+ G  +    I        + SL      + +  +I P   E 
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 330 LLYLNILLI 338
           L  +++  I
Sbjct: 251 LCEMSVESI 259

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  150 bits (381), Expect = 2e-41
 Identities = 67/189 (35%), Positives = 85/189 (44%), Gaps = 36/189 (19%)

Query: 373 RRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIK----------------- 415
           +RFS +EL  A+D FS  N++GRG FG VYK RL DG   A+K                 
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTE 77

Query: 416 ------VFH--------FSCSNEDFRALVLEYTTNGSLEKVLY---SSNYILDILQRLNI 458
                   H        F C     R LV  Y  NGS+   L     S   LD  +R  I
Sbjct: 78  VEMISMAVHRNLLRLRGF-CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
            +     L YLH      IIH D+K  N LLD+   A + DFG+AKL+  +D  +T T  
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVT-TAV 195

Query: 519 LAIIGYMAP 527
              IG++AP
Sbjct: 196 RGTIGHIAP 204

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 1e-39
 Identities = 49/302 (16%), Positives = 103/302 (34%), Gaps = 23/302 (7%)

Query: 40  IFNLSTLKVFDVDNNYVLGRL--SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLD 97
           +         D +  +   R   S+     + +   L ++   L   +          L+
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG----RVALE 87

Query: 98  ISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSIS 157
           +   PL    P         L+ + +    +   + + +     L ++ L  N L  ++ 
Sbjct: 88  LRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 158 ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV---------LFQLDLRGNKLSGSIPTCF 208
            ++  L +L+ LS R       +P  L              L  L L    +  S+P   
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 209 GNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR 268
            NL  L++L + ++ L+++   + +L  +  LD      +   P   G    L R+    
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN---NLSEIIPL 325
            + L  +P  I  L  L+ L L        +P+    L +   + +  +    L +  P+
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 326 SL 327
           + 
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 1e-39
 Identities = 52/308 (16%), Positives = 112/308 (36%), Gaps = 20/308 (6%)

Query: 42  NLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN 101
           + S  +      +  L     ++ +     N   +        ++ +N    +    +  
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN---PQIETRTGR 66

Query: 102 PLDGFLPRVVGNFSQ-SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITL 160
            L      ++ + +Q     + +    +     ++   L+ L  + +    L   +  T+
Sbjct: 67  AL-KATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 161 GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGN---------L 211
            +   L+ L+   N L  ++P  +  L  L +L +R       +P    +         L
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 212 TALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL 271
             L++L L+   + S+P+ + NL+++  L   ++     L   I +L  L  +D      
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241

Query: 272 LGDIPTTIQGLKSLQFLSL-GHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
           L + P    G   L+ L L   + L  ++P     L  LE LDL        +P  + +L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 331 LYLNILLI 338
               I+L+
Sbjct: 301 PANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 23/134 (17%)

Query: 224 LTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR--------------- 268
           + S      +      L F  +  + P    +   +     D +R               
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 269 ----NNLLGDIPTTIQGLKS--LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI 322
                  L      ++         L L    L    P+    L  L+ + +    L E 
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME- 118

Query: 323 IPLSLEKLLYLNIL 336
           +P ++++   L  L
Sbjct: 119 LPDTMQQFAGLETL 132

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 4e-38
 Identities = 67/329 (20%), Positives = 142/329 (43%), Gaps = 39/329 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTP--- 79
            +  +  +V+     L ++    V    V     +  L+++ + L+L+ N +T  +P   
Sbjct: 30  QKASVTDVVTQE--ELESITKLVVAGEKVASIQGIEYLTNL-EYLNLNGNQITDISPLSN 86

Query: 80  ------------ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN 127
                       +++ +S++ N   L++L ++ + +    P  + N ++ +  + +   +
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTK-MYSLNLGANH 143

Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
               +S  + N+T L  + +  +K+     I    L  L  LS   N++E   P  L  L
Sbjct: 144 NLSDLSP-LSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASL 198

Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF 247
             L       N+++   P    N+T L +L + +N++T +   L NL  + +L+  +N  
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI 255

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV 307
                + + +L  L  ++   N +  DI   +  L  L  L L +N+L          L 
Sbjct: 256 SDI--NAVKDLTKLKMLNVGSNQI-SDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 308 SLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
           +L +L LS N++++I PL+ L K+   + 
Sbjct: 312 NLTTLFLSQNHITDIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 5e-38
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 30/299 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELS 82
           + N++  I    + NL  L    +  N +     L  L+++  EL L+++ ++       
Sbjct: 74  NGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQNLTNLR-ELYLNEDNISD------ 124

Query: 83  FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
            +S ++N   +  L++  N         + N +  L ++ +++  +       I NLTDL
Sbjct: 125 -ISPLANLTKMYSLNLGANHNLS-DLSPLSNMT-GLNYLTVTESKVKD--VTPIANLTDL 179

Query: 143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
            S+ L  N++       L  L  L + +   N++    P  + ++  L  L +  NK++ 
Sbjct: 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 203 SIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
             P    NL+ L  L + +N+++ I + + +L  +  L+  SN       S + NL  L 
Sbjct: 236 LSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290

Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
            +  + N L  +    I GL +L  L L  N +    P     L  ++S D +N  + +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 5e-32
 Identities = 54/271 (19%), Positives = 106/271 (39%), Gaps = 25/271 (9%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
              L    +T        + +    + + KL ++   +       +   +  LE++ ++ 
Sbjct: 26  RAVLQKASVTD-------VVTQEELESITKLVVAGEKVASIQG--IEYLTN-LEYLNLNG 75

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
             I+      + NL  L ++ +G NK+  +    L  L  L+ L    + +    P  L 
Sbjct: 76  NQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN 245
           +L  ++ L+L  N     +     N+T L  L +  +++  +  I  NL D+  L    N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPI-ANLTDLYSLSLNYN 187

Query: 246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD 305
                 P  + +L  L       N +    P  +  +  L  L +G+N++    P    +
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 306 LVSLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
           L  L  L++  N +S+I  +  L KL  LN+
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 4e-28
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 13/203 (6%)

Query: 134 EEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQL 193
               +L + I   L    +     +T  +L+ +  L   G ++  SI   + +L  L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYL 71

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS 253
           +L GN+++   P    NL  L NL++ +N++T I + L NL ++  L    +       S
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISD--IS 126

Query: 254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLD 313
            + NL  +  ++   N+ L D+   +  +  L +L++  ++++   P    +L  L SL 
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 314 LSNNNLSEIIPLS-LEKLLYLNI 335
           L+ N + +I PL+ L  L Y   
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 4e-17
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 12/171 (7%)

Query: 166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
              L+     +    P     LA   +  L+   ++  +      L ++  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSL 285
           SI  I   L ++ YL+   N      P  + NL  LT +    N +     + +Q L +L
Sbjct: 58  SIQGI-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 286 QFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           + L L  + +    P    +L  + SL+L  N+    +   L  +  LN L
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (360), Expect = 1e-36
 Identities = 64/307 (20%), Positives = 101/307 (32%), Gaps = 21/307 (6%)

Query: 37  SITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
           +I  F L+    F  D       L+++   +SL+   +         L  +      + L
Sbjct: 262 TIDEFRLTYTNDFSDDIV-KFHCLANVS-AMSLAGVSIKY-------LEDVPKHFKWQSL 312

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
            I R  L  F           L+ + ++    S  IS +   L  L  +DL  N L+ S 
Sbjct: 313 SIIRCQLKQF----PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 157 SITL--GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTA 213
             +        L+ L    N     +      L  L  LD + + L        F +L  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 214 LRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKI-GNLKVLTRIDFSRNNL 271
           L  L +           I   L  +  L    N F     S +  N   LT +D S+  L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 272 LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL 331
                     L  LQ L++ HN L     + ++ L SL +LD S N +     +      
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 332 YLNILLI 338
            L    +
Sbjct: 546 SLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 7e-35
 Identities = 57/315 (18%), Positives = 91/315 (28%), Gaps = 47/315 (14%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-----DELSLSDNYLTSSTPE-- 80
           +         +    L+ +    +     +  L  +        LS+    L        
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 81  ------------LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS-QSLEFIWMSDCN 127
                        S          L  LD+SRN L         +    SL  + +S   
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNVLCH 186
               +S     L +L  +D   + L           L+KL +L       +     +   
Sbjct: 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 187 LAVLFQLDLRGNKLSGSIPTC-FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN 245
           L  L  L + GN    +  +  F N T L  L L   +L  I                  
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS----------------- 489

Query: 246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD 305
                       L  L  ++ S NNLL    +    L SL  L    NR++ S       
Sbjct: 490 ------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 306 LVSLESLDLSNNNLS 320
             SL   +L+NN+++
Sbjct: 544 PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (315), Expect = 1e-30
 Identities = 75/332 (22%), Positives = 120/332 (36%), Gaps = 36/332 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY--------VLGRLSSIVDELSLSDNYLTSSTP 79
            + KL  + S  I  L TLK  +V +N+            L+++V  + LS NY+ + T 
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTITV 170

Query: 80  E-LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE-IG 137
             L FL           LD+S NP+D    +        L  + +     S  I +  + 
Sbjct: 171 NDLQFLRENPQ--VNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRGNFNSSNIMKTCLQ 226

Query: 138 NLTDLISIDLGGNKLNGSISI------TLGKLQKLQFLSFR--GNELEGSIPNVLCHLAV 189
           NL  L    L   +     ++       +  L  +    FR                LA 
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 190 LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG 249
           +  + L G  +              ++L +   +L   P++  +L  +  L    N    
Sbjct: 287 VSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSI 342

Query: 250 PLPSKIGNLKVLTRIDFSRNNL--LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV 307
                   L  L+ +D SRN L   G    +  G  SL+ L L  N     +  +F  L 
Sbjct: 343 SFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399

Query: 308 SLESLDLSNNNLSEIIPLS----LEKLLYLNI 335
            L+ LD  ++ L  +   S    LEKLLYL+I
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (312), Expect = 3e-30
 Identities = 64/332 (19%), Positives = 110/332 (33%), Gaps = 37/332 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
           + N +      +   L++L+                +G+L ++  +L+++ N++ S    
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK-KLNVAHNFIHS---- 142

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLP---RVVGNFSQSLEFIWMSDCNISGGISEEIG 137
               +  SN   L  +D+S N +        + +    Q    + MS   I   I ++  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 138 NLTDLISIDLGGNKLNGSI-SITLGKLQKLQFLSFRGNELEG---------SIPNVLCHL 187
               L  + L GN  + +I    L  L  L        E +          SI   LC +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF 247
            +  +  L            F  L  +  + L    +  +   +        L       
Sbjct: 262 TID-EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQL 319

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDL- 306
                  +  LK L     + N     I      L SL +L L  N L  S   S+ DL 
Sbjct: 320 KQFPTLDLPFLKSL---TLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 307 -VSLESLDLSNNNLSEIIP--LSLEKLLYLNI 335
             SL  LDLS N    +    + LE+L +L+ 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (309), Expect = 6e-30
 Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 25/285 (8%)

Query: 67  LSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDC 126
               D  L+    ++            K +D+S NPL         NFS+ L+++ +S C
Sbjct: 16  YQCMDQKLSKVPDDIP--------SSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRC 66

Query: 127 NISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCH 186
            I     +    L  L ++ L GN +      +   L  L+ L     +L       +  
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 187 LAVLFQLDLRGNKLSG-SIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKD----ILYL 240
           L  L +L++  N +    +P  F NLT L ++ L  N + +I  + L  L++     L L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP-TTIQGLKSLQFLSLGHNRLQGSI 299
           D   N     +  +      L  +    N    +I  T +Q L  L    L     +   
Sbjct: 187 DMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 300 ------PNSFDDLVSL--ESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                 P+  + L  +  +   L+  N      +    L  ++ +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (308), Expect = 9e-30
 Identities = 57/323 (17%), Positives = 103/323 (31%), Gaps = 42/323 (13%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           S N L  + S +  N S L+  D+        + +I                + ++    
Sbjct: 40  SFNPLKILKSYSFSNFSELQWLDLSRC----EIETI---------------EDKAW---- 76

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
               +L  L ++ NP+  F P      + SLE +   +  ++   S  IG L  L  +++
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 148 GGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHL----AVLFQLDLRGNKLSG 202
             N ++   +      L  L  +    N ++    N L  L     V   LD+  N +  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 203 SIPTCFGNLTALRNLHLDSNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
                F  +  L  L L  N  +S  + + L NL  +         F      +I    +
Sbjct: 196 IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 261 L--------TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESL 312
           +             +  N   D       L ++  +SL    +              +SL
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSL 312

Query: 313 DLSNNNLSEIIPLSLEKLLYLNI 335
            +    L +   L L  L  L +
Sbjct: 313 SIIRCQLKQFPTLDLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (291), Expect = 1e-27
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 12/238 (5%)

Query: 113 NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR 172
           +   S + I +S   +    S    N ++L  +DL   ++          L  L  L   
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI--PSI 230
           GN ++   P     L  L  L     KL+       G L  L+ L++  N + S   P+ 
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 231 LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS---RNNLLGDIPTTIQGLKSLQF 287
             NL +++++D   N       + +  L+   +++ S     N +  I         L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 288 LSLGHNRLQGSIP-NSFDDLVSLESLDLS------NNNLSEIIPLSLEKLLYLNILLI 338
           L+L  N    +I      +L  L    L         NL    P  +E L  + I   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (259), Expect = 1e-23
 Identities = 44/217 (20%), Positives = 73/217 (33%), Gaps = 15/217 (6%)

Query: 28  SQNKLVGIVSITIFNLST--LKVFDVDNN------YVLGRLSSIVDELSLSDNYLTSSTP 79
           S+N L      +  +L T  L+  D+  N           L  +   L    + L   T 
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ-HLDFQHSTLKRVTE 416

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GN 138
             +F     + + L  LDIS          +    + SL  + M+  +        +  N
Sbjct: 417 FSAF----LSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFAN 471

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
            T+L  +DL   +L          L +LQ L+   N L     +    L  L  LD   N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLK 235
           ++  S         +L   +L +N +  I      L+
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (257), Expect = 3e-23
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 28/209 (13%)

Query: 130 GGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV 189
           G ++  I  + ++ +      KL+    +        + +    N L+        + + 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS---KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 190 LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG 249
           L  LDL   ++       +  L  L NL L  N + S                       
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--------------------- 96

Query: 250 PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG-SIPNSFDDLVS 308
             P     L  L  +      L       I  L +L+ L++ HN +    +P  F +L +
Sbjct: 97  --PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 309 LESLDLSNNNLSEIIPLSLEKLLYLNILL 337
           L  +DLS N +  I    L+ L     + 
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVN 183

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 2e-33
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 35/314 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELS 82
            +  +   VS T  +L  +     D   +     +  L+++  +++ S+N LT       
Sbjct: 32  GKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLT-QINFSNNQLTD------ 82

Query: 83  FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
            ++ + N   L  + ++ N +    P  + N +  L  + + +  I+    + + NLT+L
Sbjct: 83  -ITPLKNLTKLVDILMNNNQIADITP--LANLTN-LTGLTLFNNQITD--IDPLKNLTNL 136

Query: 143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
             ++L  N ++   +  L  L  LQ LSF GN++    P  L +L  L +LD+  NK+S 
Sbjct: 137 NRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 203 SIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
              +    LT L +L   +N+++ I   L  L ++  L    N         + +L  LT
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI 322
            +D + N +    P  + GL  L  L LG N++    P     L +L +L+L+ N L +I
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302

Query: 323 IPLS-LEKLLYLNI 335
            P+S L+ L YL +
Sbjct: 303 SPISNLKNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (329), Expect = 5e-33
 Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 40/329 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTP--- 79
           + N++  I  +   NL+ L    + NN +     L  L+++   L LS N ++  +    
Sbjct: 98  NNNQIADITPLA--NLTNLTGLTLFNNQITDIDPLKNLTNLN-RLELSSNTISDISALSG 154

Query: 80  -----------ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNI 128
                      +++ L  ++N   L++LDIS N +       +   + +LE +  ++  I
Sbjct: 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLT-NLESLIATNNQI 211

Query: 129 SGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLA 188
           S      +G LT+L  + L GN+L   I  TL  L  L  L    N++    P  L  L 
Sbjct: 212 SD--ITPLGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLT 265

Query: 189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFV 248
            L +L L  N++S   P     LTAL NL L+ N+L  I  I  NLK++ YL  + N   
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNIS 322

Query: 249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS 308
              P  + +L  L R+ F  NN + D+ + +  L ++ +LS GHN++    P    +L  
Sbjct: 323 DISP--VSSLTKLQRLFFY-NNKVSDVSS-LANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 309 LESLDLSNNNLSEIIPLSLEKLLYLNILL 337
           +  L L++   +         +   N + 
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (303), Expect = 1e-29
 Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 21/269 (7%)

Query: 68  SLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN 127
            L    +T  TP ++ + + +      K  + +  +   +     +  Q +  +      
Sbjct: 2   PLGSATITQDTP-INQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQ-VTTLQADRLG 57

Query: 128 ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHL 187
           I     + +  L +L  I+   N+L       L  L KL  +    N++    P  L +L
Sbjct: 58  IK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF 247
             L  L L  N+++   P    NLT L  L L SN ++ I ++   L  +  L F  N  
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSF-GNQV 167

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV 307
               P  + NL  L R+D S N +     + +  L +L+ L   +N++    P     L 
Sbjct: 168 TDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILT 221

Query: 308 SLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
           +L+ L L+ N L +I  L+ L  L  L++
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (300), Expect = 3e-29
 Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 31/319 (9%)

Query: 25  TIDSQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTP 79
            +   N++  +  +   NL+TL+  D+ +N V     L +L+++ + L  ++N ++    
Sbjct: 160 QLSFGNQVTDLKPLA--NLTTLERLDISSNKVSDISVLAKLTNL-ESLIATNNQISD--- 213

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
               ++ +     L +L ++ N L       + + +  L  + +++  IS      +  L
Sbjct: 214 ----ITPLGILTNLDELSLNGNQLKDIGT--LASLTN-LTDLDLANNQISN--LAPLSGL 264

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T L  + LG N+++      L  L  L  L    N+LE   P  + +L  L  L L  N 
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           +S   P    +LT L+ L   +N+++ + S L NL +I +L    N      P  + NL 
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            +T++  +              +     +      L    P +  D  S    D++ N  
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLP 433

Query: 320 SEIIPLSLEKLLYLNILLI 338
           S    +S      + I   
Sbjct: 434 SYTNEVSYTFSQPVTIGKG 452

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 34/230 (14%), Positives = 85/230 (36%), Gaps = 24/230 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELS 82
           + N++  +    +  L+ L    +  N +     L  L+++   L L++N L        
Sbjct: 251 ANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALT-NLELNENQLED------ 301

Query: 83  FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL 142
            +S +SN K L  L +  N +    P  V + ++ L+ ++  +  +S      + NLT++
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSD--VSSLANLTNI 355

Query: 143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG 202
             +  G N+++    +    L ++  L         +  N   ++++   +      L  
Sbjct: 356 NWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI- 412

Query: 203 SIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP 252
             P    +  +     +  N  +    + +     + +   +  F G + 
Sbjct: 413 -APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  127 bits (321), Expect = 4e-33
 Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 45/196 (22%)

Query: 373 RRFSYQELLRATDGFS------ANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------ 420
             FS+ EL   T+ F         N +G G FG VYK  + +    A+K           
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71

Query: 421 ---------------------------CSNEDFRALVLEYTTNGSLEKVLYSSNY--ILD 451
                                       S+ D   LV  Y  NGSL   L   +    L 
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLS 131

Query: 452 ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
              R  I     + + +LH       IH D+K  N LLD+   A +SDFG+A+      Q
Sbjct: 132 WHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188

Query: 512 SMTQTQTLAIIGYMAP 527
           ++  ++ +    YMAP
Sbjct: 189 TVMTSRIVGTTAYMAP 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (315), Expect = 3e-32
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 22/264 (8%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
              ++D+ L  +   L       +   +K+LD+S NPL       +  F+  LE + +S 
Sbjct: 14  IEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSS 67

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
             +    + ++ +L+ L ++DL  N +       L     ++ L    N +     +   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFW 243
                  + L  NK++       G  + ++ L L  NE+ ++    +  +   + +L+  
Sbjct: 121 GKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF 303
            N     +  ++     L  +D S N L   +    Q    + ++SL +N+L   I  + 
Sbjct: 178 YNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 304 DDLVSLESLDLSNNNLSEIIPLSL 327
               +LE  DL  N          
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 1e-25
 Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 16/224 (7%)

Query: 116 QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE 175
              +   ++D ++   ++    +  ++  +DL GN L+   +  L    KL+ L+   N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNL 234
           L     + L  L+ L  LDL  N +   +        ++  LH  +N ++ +  S     
Sbjct: 70  LY-ETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNISRVSCSRGQGK 122

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG-DIPTTIQGLKSLQFLSLGHN 293
           K    +   +N          G    +  +D   N +   +         +L+ L+L +N
Sbjct: 123 K---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIP--LSLEKLLYLNI 335
            +   +         L++LDLS+N L+ + P   S   + ++++
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (265), Expect = 2e-25
 Identities = 52/298 (17%), Positives = 107/298 (35%), Gaps = 33/298 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD--------ELSLSDNYLTSSTP 79
           S N L  I +  +   + L++ ++ +N     L   +D         L L++NY+     
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSN----VLYETLDLESLSTLRTLDLNNNYVQ---- 93

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           EL    S      ++ L  + N +     RV  +  Q  + I++++  I+     + G  
Sbjct: 94  ELLVGPS------IETLHAANNNIS----RVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 140 TDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
           + +  +DL  N+++  + +        L+ L+ + N +   +       A L  LDL  N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSN 201

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN-LFVGPLPSKIGN 257
           KL+  +   F +   +  + L +N+L  I   L   +++ + D   N    G L      
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
            + +  +       L       +          G    +       D L++L      
Sbjct: 261 NQRVQTVAKQTVKKLTGQN--EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 5e-24
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 155 SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL 214
           +I        + +      + L+ ++ ++      + +LDL GN LS          T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD 274
             L+L SN L     +  +L  +  LD  +N        ++     +  +  + NN +  
Sbjct: 61  ELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISR 113

Query: 275 IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL 331
           +  +    +  + + L +N++             ++ LDL  N +  +    L    
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLE 310
           +     N         + ++L   + +  Q   +++ L L  N L             LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 311 SLDLSNNNLSEIIPLS-LEKLLYLNI 335
            L+LS+N L E + L  L  L  L++
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDL 87

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 275 IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLN 334
           I    Q     +   +  + L+ ++ +      +++ LDLS N LS+I    L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 335 IL 336
           +L
Sbjct: 62  LL 63

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (320), Expect = 7e-32
 Identities = 56/280 (20%), Positives = 108/280 (38%), Gaps = 11/280 (3%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           + +    L L  N + +           ++  +L++L+++ N +    P    N   +L 
Sbjct: 30  IPTETRLLDLGKNRIKTLNQ-----DEFASFPHLEELELNENIVSAVEPGAFNNLF-NLR 83

Query: 120 FIWMSDCNISGGISEEI-GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG 178
            + +    +   I   +   L++L  +D+  NK+   +      L  L+ L    N+L  
Sbjct: 84  TLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPS-ILWNLKD 236
                   L  L QL L    L+ SIPT    +L  L  L L    + +I       L  
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 237 ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
           +  L+     ++  +         LT +  +  NL       ++ L  L+FL+L +N + 
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 297 GSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
               +   +L+ L+ + L    L+ + P +   L YL +L
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 9e-28
 Identities = 61/305 (20%), Positives = 112/305 (36%), Gaps = 23/305 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD----------ELSLSDNYLTSS 77
            +N++  +      +   L+  +++ N     +S++             L L  N L   
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNEN----IVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI- 136
              +   + +SN   L KLDIS N +   L  +  +    L+ + + D ++   IS    
Sbjct: 96  PLGV--FTGLSN---LTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVY-ISHRAF 148

Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
             L  L  + L    L    +  L  L  L  L  R   +          L  L  L++ 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKI 255
                 ++         L +L +    LT++P   + +L  + +L+   N       S +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
             L  L  I      L    P   +GL  L+ L++  N+L     + F  + +LE+L L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 316 NNNLS 320
           +N L+
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 1e-24
 Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 23/232 (9%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
              V          + +    I     +E  +   L  ++L  N ++         L  L
Sbjct: 23  FVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS 226
           + L  R N L+     V   L+ L +LD+  NK+   +   F +L  L++L +  N+L  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 227 IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQ 286
           I                   F G        L  L ++   + NL       +  L  L 
Sbjct: 143 ISH---------------RAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 287 FLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
            L L H  +      SF  L  L+ L++S+    + +  +    L L  L I
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (310), Expect = 2e-30
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 22/264 (8%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
              ++D+ L  +   L       +   +K+LD+S NPL       +  F+  LE + +S 
Sbjct: 14  IEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSS 67

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
             +    + ++ +L+ L ++DL  N +       L     ++ L    N +     +   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFW 243
                  + L  NK++       G  + ++ L L  NE+ ++    +  +   + +L+  
Sbjct: 121 GKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF 303
            N     +  ++     L  +D S N L   +    Q    + ++SL +N+L   I  + 
Sbjct: 178 YNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 304 DDLVSLESLDLSNNNLSEIIPLSL 327
               +LE  DL  N          
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (280), Expect = 1e-26
 Identities = 50/363 (13%), Positives = 107/363 (29%), Gaps = 28/363 (7%)

Query: 39  TIFNLSTLKVFDVDNNYVLGRLSSI-------VDELSLSDNYLTSSTPELSFLSSMSNCK 91
            +    +++     NN     +S +          + L++N +T                
Sbjct: 94  ELLVGPSIETLHAANN----NISRVSCSRGQGKKNIYLANNKITMLRDL-----DEGCRS 144

Query: 92  YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNK 151
            ++ LD+  N +D      +   S +LE + +    I   +  ++     L ++DL  NK
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNK 202

Query: 152 LNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS-GSIPTCFGN 210
           L   +         + ++S R N+L   I   L     L   DLRGN    G++   F  
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP-SKIGNLKVLTRIDFS-- 267
              ++ +      +  +         +  L  +       LP      L  L R + +  
Sbjct: 261 NQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 268 --RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
             + +    +    +     + +     + +  I        +  +L+     L E +  
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 326 SLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSNMQPQASRRRFSYQELLRATD 385
                  L+  L   V                     V   +     ++      +R  D
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 386 GFS 388
            + 
Sbjct: 439 MYQ 441

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 6e-26
 Identities = 52/320 (16%), Positives = 112/320 (35%), Gaps = 33/320 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD--------ELSLSDNYLTSSTP 79
           S N L  I +  +   + L++ ++ +N     L   +D         L L++NY+     
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSN----VLYETLDLESLSTLRTLDLNNNYVQ---- 93

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           EL    S      ++ L  + N +         +  Q  + I++++  I+     + G  
Sbjct: 94  ELLVGPS------IETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 140 TDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
           + +  +DL  N+++  + +        L+ L+ + N +   +   +   A L  LDL  N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN 201

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN-LFVGPLPSKIGN 257
           KL+  +   F +   +  + L +N+L  I   L   +++ + D   N    G L      
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
            + +  +       L       +          G    +       D L++L+  + +  
Sbjct: 261 NQRVQTVAKQTVKKLTGQN--EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 318 NLSEIIPLSLEKLLYLNILL 337
           +        LE         
Sbjct: 319 SGQGSETERLECERENQARQ 338

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 3e-24
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 16/224 (7%)

Query: 116 QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE 175
              +   ++D ++   ++    +  ++  +DL GN L+   +  L    KL+ L+   N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNL 234
           L  ++   L  L+ L  LDL  N +            ++  LH  +N ++ +  S     
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGK 122

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG-DIPTTIQGLKSLQFLSLGHN 293
           K    +   +N          G    +  +D   N +   +         +L+ L+L +N
Sbjct: 123 K---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIP--LSLEKLLYLNI 335
            +             L++LDLS+N L+ + P   S   + ++++
Sbjct: 180 FIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 3e-23
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 9/169 (5%)

Query: 163 LQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN 222
             + +      + L+ ++ ++      + +LDL GN LS          T L  L+L SN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGL 282
            L     +  +L  +  LD  +N        ++     +  +  + NN +  +  +    
Sbjct: 69  VLYETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVSCSR--G 119

Query: 283 KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL 331
           +  + + L +N++             ++ LDL  N +  +    L    
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 2e-18
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDI 237
           +I  +  +        +  + L  ++ +   +   ++ L L  N L+ I  + L     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
             L+  SN+    L   + +L  L  +D + N +       +    S++ L   +N +  
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
              +        +++ L+NN ++ +  L       +  L
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 27/269 (10%), Positives = 57/269 (21%), Gaps = 19/269 (7%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY------VLGRLSSIVDELSLSDNYLTSSTPEL 81
           S NKL  +      + + +    + NN        L    ++ +   L  N     T   
Sbjct: 199 SSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL-EHFDLRGNGFHCGTLRD 256

Query: 82  SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD 141
            F       K  +   +++  +   L                         +     L  
Sbjct: 257 FFS------KNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 142 LISIDLGGNKLNGS----ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
           L   +       GS    +        + + +     +    I  V         L+ + 
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
             L   +         L      +     +         +  L      +      +   
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQ 286
                R      +    +      LK L 
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLKKLN 458

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 7e-30
 Identities = 62/316 (19%), Positives = 120/316 (37%), Gaps = 30/316 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN-------YVLGRLSSIVDELSLSDNYLTSSTPE 80
             + +  + +  + +   +++ ++++        Y      +I  +L +  N +    P 
Sbjct: 53  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNAIRYLPPH 111

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNL 139
           +       N   L  L + RN L   LPR + + +  L  + MS+ N+   I ++     
Sbjct: 112 V-----FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQAT 164

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T L ++ L  N+L     + L  +  L   +   N L       L     + +LD   N 
Sbjct: 165 TSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           ++  +         L  L L  N LT     L N   ++ +D   N     +      ++
Sbjct: 217 IN-VVR--GPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L R+  S NN L  +    Q + +L+ L L HN L   +  +      LE+L L +N++
Sbjct: 273 RLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

Query: 320 SEIIPLSLEKLLYLNI 335
             +   +   L  L +
Sbjct: 331 VTLKLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 5e-29
 Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 15/277 (5%)

Query: 61  SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF 120
           S++  +    D ++   T ++ F          K +    + +      ++ +F Q +E 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VEL 73

Query: 121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI 180
           + ++D  I    +        +  + +G N +          +  L  L    N+L    
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 181 PNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILY 239
             +  +   L  L +  N L       F   T+L+NL L SN LT +  S++ +L    +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---H 190

Query: 240 LDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI 299
            +   NL      S +     +  +D S N+ +  +   +     L  L L HN L    
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLT-DT 241

Query: 300 PNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                +   L  +DLS N L +I+     K+  L  L
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (260), Expect = 2e-24
 Identities = 57/317 (17%), Positives = 105/317 (33%), Gaps = 55/317 (17%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN-------YVLGRLSSIVDELSLSDNYLTSSTPE 80
             N +  +      N+  L V  ++ N        +      +   LS+S+N L     +
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT-TLSMSNNNLERIEDD 159

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                       L+ L +S N L             SL    +S   +S      +    
Sbjct: 160 T-----FQATTSLQNLQLSSNRLTHVDL---SLIP-SLFHANVSYNLLS-----TLAIPI 205

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
            +  +D   N +N    +      +L  L  + N L       L +   L ++DL  N+L
Sbjct: 206 AVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL 260

Query: 201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
              +   F  +  L  L++ +N L ++      +                       LKV
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---------------------TLKV 299

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
           L   D S N+LL  +         L+ L L HN +  ++        +L++L LS+N+  
Sbjct: 300 L---DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

Query: 321 EIIPLSLEKLLYLNILL 337
                +L + +    + 
Sbjct: 353 CNSLRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 1/159 (0%)

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDI 237
            I + L +  V + + +               L   + +   ++ +  +P+ +L + + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
             L+                   + ++    N +    P   Q +  L  L L  N L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                F +   L +L +SNNNL  I   + +    L  L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (307), Expect = 1e-29
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 15/279 (5%)

Query: 66  ELSLSDNYLTSSTPELSFLSSM-SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMS 124
            L++ +  L      L  +  + +    +    +    ++           Q LE +   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE--GSIPN 182
                         L  L  +    NK   + S     L  L+FL    N L   G    
Sbjct: 316 FGQFPTL------KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 183 VLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYL 240
                  L  LDL  N +  ++ + F  L  L +L    + L  +   S+  +L++++YL
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSI 299
           D                L  L  +  + N+   +    I   L++L FL L   +L+   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 300 PNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
           P +F+ L SL+ L++++N L  +     ++L  L  + +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 1e-26
 Identities = 63/305 (20%), Positives = 107/305 (35%), Gaps = 14/305 (4%)

Query: 23  ICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDN--YLTSSTPE 80
           +    ++  L       +  L  L + +    Y+   L  I+D  +   N    +  +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
           +  +   S     + L++       F         +SL+ +  +        SE   +L 
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEV--DLP 347

Query: 141 DLISIDLGGNKLN--GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
            L  +DL  N L+  G  S +      L++L    N +  ++ +    L  L  LD + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 199 KLSGSIPTC-FGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKI- 255
            L        F +L  L  L +           I   L  +  L    N F       I 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
             L+ LT +D S+  L    PT    L SLQ L++  N+L+      FD L SL+ + L 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 316 NNNLS 320
            N   
Sbjct: 527 TNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 2e-24
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 12/242 (4%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
             ++  N   S + + +S   +    S    +  +L  +DL   ++          L  L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS 226
             L   GN ++         L+ L +L      L+       G+L  L+ L++  N + S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 227 I--PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS---RNNLLGDIPTTIQG 281
              P    NL ++ +LD  SN       + +  L  +  ++ S     N +  I      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 282 LKSLQFLSLGHNRLQGSIP-NSFDDLVSLESLDL------SNNNLSEIIPLSLEKLLYLN 334
              L  L+L +N    ++       L  LE   L      +  NL +    +LE L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 335 IL 336
           I 
Sbjct: 259 IE 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (263), Expect = 3e-24
 Identities = 69/334 (20%), Positives = 119/334 (35%), Gaps = 40/334 (11%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
           + N +  +       LS+L+                +G L ++  EL+++ N + S    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLIQS---- 138

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ---SLEFIWMSDCNISGGISEEIG 137
                  SN   L+ LD+S N +       +    Q       + +S   ++  I     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 138 NLTDLISIDLGGNKLNGSI-SITLGKLQKLQFLS------FRGNELEGSIPNVLCHLAVL 190
               L  + L  N  + ++    +  L  L+              LE    + L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 191 FQLDLRGNKLSGS---IPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWSN 245
              + R   L      I   F  LT + +  L S  +  +   S  +  + +  ++    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ--GSIPNSF 303
            F          LK L R+ F+ +N  G+  + +  L SL+FL L  N L   G    S 
Sbjct: 318 QF------PTLKLKSLKRLTFT-SNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 304 DDLVSLESLDLSNNNLSEIIP--LSLEKLLYLNI 335
               SL+ LDLS N +  +    L LE+L +L+ 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 8e-23
 Identities = 56/256 (21%), Positives = 96/256 (37%), Gaps = 13/256 (5%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
            K LD+S NPL         +F + L+ + +S C I         +L+ L ++ L GN +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL-SGSIPTCFGNL 211
                     L  LQ L      L       + HL  L +L++  N + S  +P  F NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 212 TALRNLHLDSNELTSIPS----ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
           T L +L L SN++ SI      +L  +  +      S   +  +         L ++   
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 268 RNNLLGDIP-TTIQGLKSLQFLSL------GHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
            N    ++  T IQGL  L+   L          L+    ++ + L +L   +     L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 321 EIIPLSLEKLLYLNIL 336
             +   ++    L  +
Sbjct: 269 YYLDDIIDLFNCLTNV 284

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 9e-22
 Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 37/279 (13%)

Query: 28  SQNKLVGIVSITIF-NLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSS 86
               +  +   +       L++ +             +  L+ + N   +         S
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-------AFS 342

Query: 87  MSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIGNLTDLIS 144
             +   L+ LD+SRN L  F      +     SL+++ +S   +   +S     L  L  
Sbjct: 343 EVDLPSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400

Query: 145 IDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
           +D   + L   S       L+ L +L         +   +   L+ L  L + GN    +
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 204 IPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
                F  L  L  L L   +L  +                        P+   +L  L 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLS-----------------------PTAFNSLSSLQ 497

Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN 301
            ++ + N L          L SLQ + L  N    S P 
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 5e-21
 Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 43/325 (13%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           S N L  + S + F+   L+V D+        + +I                + ++    
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRC----EIQTI---------------EDGAY---- 72

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
            +  +L  L ++ NP+   L     +   SL+ +   + N++   +  IG+L  L  +++
Sbjct: 73  QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 148 GGNKLN-GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVL----FQLDLRGNKLSG 202
             N +    +      L  L+ L    N+++      L  L  +      LDL  N ++ 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 203 SIPTCFGNLTALRNLHLDSNELTS--IPSILWNLK--DILYLDFWSNLFVGPLPSK-IGN 257
             P  F  +  L  L L +N  +   + + +  L   ++  L        G L       
Sbjct: 192 IQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 258 LKVLTRIDFSRNNL------LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
           L+ L  +      L      L DI      L ++   SL    ++     S++     + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNIL 336
           L+L N    +   L L+ L  L   
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFT 333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 2/148 (1%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPL 251
           LDL  N L       F +   L+ L L   E+ +I      +L  +  L    N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ-GSIPNSFDDLVSLE 310
                 L  L ++     NL       I  LK+L+ L++ HN +Q   +P  F +L +LE
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 311 SLDLSNNNLSEIIPLSLEKLLYLNILLI 338
            LDLS+N +  I    L  L  + +L +
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 6e-17
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 20/216 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN---------YVLGRLSSIVDELSLSDNYLTSST 78
           + NK       +  +L +L+  D+  N               +S+   L LS N + + +
Sbjct: 333 TSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK-YLDLSFNGVITMS 389

Query: 79  PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGN 138
                L        L+ LD   + L       V    ++L ++ +S  +     +     
Sbjct: 390 SNFLGLEQ------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 139 LTDLISIDLGGNKLNGSI-SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
           L+ L  + + GN    +       +L+ L FL     +LE   P     L+ L  L++  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELT-SIPSILW 232
           N+L       F  LT+L+ + L +N    S P I +
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  117 bits (296), Expect = 1e-29
 Identities = 43/203 (21%), Positives = 67/203 (33%), Gaps = 48/203 (23%)

Query: 367 QPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDF 426
              +S      + L   +       +  RG FG V+KA+L      A+K+F         
Sbjct: 6   HHHSSGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQ 64

Query: 427 RA--------------------------------LVLEYTTNGSLEKVLYSSNYILDILQ 454
                                             L+  +   GSL   L     ++   +
Sbjct: 65  NEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL--KANVVSWNE 122

Query: 455 RLNIMIDVTSALEYLH------FGYSTP-IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
             +I   +   L YLH           P I H D+K  N LL +N+ A ++DFG+A    
Sbjct: 123 LCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF- 181

Query: 508 GEDQSMTQTQTLAIIG---YMAP 527
             +   +   T   +G   YMAP
Sbjct: 182 --EAGKSAGDTHGQVGTRRYMAP 202

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (290), Expect = 6e-29
 Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 8/231 (3%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLG---KL 163
           L  V      S   + +    +          LT L  + L  N L+             
Sbjct: 19  LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGT 77

Query: 164 QKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTC-FGNLTALRNLHLDSN 222
             L++L    N +  ++ +    L  L  LD + + L        F +L  L  L +   
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 223 ELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKI-GNLKVLTRIDFSRNNLLGDIPTTIQ 280
                 + I   L  +  L    N F       I   L+ LT +D S+  L    PT   
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 281 GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL 331
            L SLQ L++ HN         +  L SL+ LD S N++       L+   
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 1e-24
 Identities = 53/259 (20%), Positives = 80/259 (30%), Gaps = 35/259 (13%)

Query: 67  LSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS--QSLEFIWMS 124
           L L  N L S                L KL +S N L  F      +     SL+++ +S
Sbjct: 33  LELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS 86

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNV 183
              +   +S     L  L  +D   + L           L+ L +L         +   +
Sbjct: 87  FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 184 LCHLAVLFQLDLRGNKLSGSI-PTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDF 242
              L+ L  L + GN    +  P  F  L  L  L L   +L  +               
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------------- 192

Query: 243 WSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS 302
               F          L  L  ++ S NN         + L SLQ L    N +  S    
Sbjct: 193 --TAFNS--------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 303 FDDLV-SLESLDLSNNNLS 320
                 SL  L+L+ N+ +
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 7/197 (3%)

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS-- 201
            I      L    S+  G       L    N+L+     V   L  L +L L  N LS  
Sbjct: 11  EIRCNSKGLT---SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 202 GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN-LFVGPLPSKIGNLKV 260
           G         T+L+ L L  N + ++ S    L+ + +LDF  + L      S   +L+ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI-PNSFDDLVSLESLDLSNNNL 319
           L  +D S  +          GL SL+ L +  N  Q +  P+ F +L +L  LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 320 SEIIPLSLEKLLYLNIL 336
            ++ P +   L  L +L
Sbjct: 188 EQLSPTAFNSLSSLQVL 204

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (303), Expect = 6e-29
 Identities = 65/330 (19%), Positives = 118/330 (35%), Gaps = 42/330 (12%)

Query: 42  NLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLK 94
            L+T +   +  NY           L  +   L L   Y   +  + +F     N   L+
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQ-LLELGSQYTPLTIDKEAF----RNLPNLR 76

Query: 95  KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE--IGNLTDLISIDLGGNKL 152
            LD+  + +    P         L  + +  C +S  + ++    NL  L  +DL  N++
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 153 NG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV--LFQLDLRGNKLSGSIPTCFG 209
               +  + GKL  L+ + F  N++     + L  L    L    L  N L   +   +G
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 210 NL------TALRNLHLDSNELTSIPS-------------ILWNLKDILYLDFWSNLFVGP 250
                     L  L +  N  T   +              L     I+   F  +    P
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 251 LPSKIGNLKV--LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS 308
             +    L    +  +D S   +        + LK L+ L+L +N++      +F  L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 309 LESLDLSNNNLSEIIPLS---LEKLLYLNI 335
           L+ L+LS N L E+   +   L K+ Y+++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (301), Expect = 1e-28
 Identities = 62/335 (18%), Positives = 116/335 (34%), Gaps = 35/335 (10%)

Query: 37  SITIFNLSTLKVFDVDNNYVLGRLSSIVD----ELSLSDNYLTSSTPELSF-------LS 85
           +++ F+L+   ++   +      ++   +     L +S N  T                 
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 86  SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ-SLEFIWMSDCNISGGISEEIGNLTDLIS 144
           S+    ++       + +           ++ S+  + +S   +    S     L DL  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI 204
           ++L  NK+N         L  LQ L+   N L     +    L  +  +DL+ N ++   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 205 PTCFGNLTALRNLHLDSNELTSIPSI---------LWNLKDILYLDFWSN--------LF 247
              F  L  L+ L L  N LT+I  I            L  +  ++  +N        L 
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLG-DIPTTIQGLKSLQFLSLGHNRLQGSI-----PN 301
              +   +  +  L  +  ++N         T     SL+ L LG N LQ +       +
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 302 SFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            F+ L  L+ L L++N L+ + P     L  L  L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (300), Expect = 1e-28
 Identities = 72/315 (22%), Positives = 108/315 (34%), Gaps = 24/315 (7%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSN 89
             L+    I         + D D N   G   S V  L LS  ++ S             
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-----RVFET 288

Query: 90  CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGG 149
            K LK L+++ N ++            +L+ + +S   +    S     L  +  IDL  
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 150 NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFG 209
           N +      T   L+KLQ L  R N L       +  +  +  + L GNKL         
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL- 401

Query: 210 NLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWSNLFVG-PLPSKIGNLKVLTRIDF 266
                  +HL  N L ++     L  +  +  L    N F              L ++  
Sbjct: 402 ---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 267 SRNNLLGDIPTTI-----QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
             N L     T +     +GL  LQ L L HN L    P  F  L +L  L L++N L+ 
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 322 IIPLSLEKLL-YLNI 335
           +    L   L  L+I
Sbjct: 519 LSHNDLPANLEILDI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 1e-27
 Identities = 63/341 (18%), Positives = 112/341 (32%), Gaps = 37/341 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTPE 80
           S N +  + + +   L  L++ ++ + Y    +             L L  + +      
Sbjct: 32  SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHP 90

Query: 81  LSFLSSMSNCKYLKKLDISRNPL-DGFLPRVVGNFSQSLEFIWMSDCNISG-GISEEIGN 138
            +F        +L +L +    L D  L        ++L  + +S   I    +    G 
Sbjct: 91  DAF----QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQ--KLQFLSFRGNELEGSIPNVLCHLAVLFQ---- 192
           L  L SID   N++       L  LQ   L F S   N L   +          F+    
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 193 --LDLRGNKLSGSIPTCFGN------------LTALRNLHLDSNELTSIP-SILWNLKD- 236
             LD+ GN  +  I   F N               +       + +     +    L   
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 237 -ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL 295
            + +LD                LK L  ++ + N +         GL +LQ L+L +N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 296 QGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                ++F  L  +  +DL  N+++ I   + + L  L  L
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 163 LQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI-PTCFGNLTALRNLHLDS 221
           L   + L    N +     +    L  L  L+L       +I    F NL  LR L L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 222 NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI--PTTI 279
           +++  +                 + F G        L  L  +      L   +      
Sbjct: 83  SKIYFLHP---------------DAFQG--------LFHLFELRLYFCGLSDAVLKDGYF 119

Query: 280 QGLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
           + LK+L  L L  N+++   +  SF  L SL+S+D S+N +  +    LE L    +   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  115 bits (289), Expect = 8e-29
 Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 34/163 (20%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFR------------------------- 427
           +GRG+FG V KA+ +   + AIK        + F                          
Sbjct: 16  VGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPV 74

Query: 428 ALVLEYTTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPH 485
            LV+EY   GSL  VL+ +           ++  +  +  + YLH      +IH DLKP 
Sbjct: 75  CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPP 134

Query: 486 NKLLDDN-IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           N LL     V  + DFG A  +           + A   +MAP
Sbjct: 135 NLLLVAGGTVLKICDFGTACDIQ--THMTNNKGSAA---WMAP 172

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  113 bits (286), Expect = 2e-28
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN----EDFR--------------------- 427
           IG GSFG+V++A    G + A+K+      +     +F                      
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103

Query: 428 ------ALVLEYTTNGSLEKVLYSSN--YILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                 ++V EY + GSL ++L+ S     LD  +RL++  DV   + YLH   + PI+H
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVH 162

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ-TQTLAIIGYMAP 527
            +LK  N L+D      + DFG+++L      S      T     +MAP
Sbjct: 163 RNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE---WMAP 208

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 3e-28
 Identities = 59/316 (18%), Positives = 117/316 (37%), Gaps = 30/316 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN-------YVLGRLSSIVDELSLSDNYLTSSTPE 80
             + +  + +  + +   +++ ++++        Y      +I  +L +  N +    P 
Sbjct: 59  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNAIRYLPPH 117

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNL 139
           +       N   L  L + RN L      +  N    L  + MS+ N+   I ++     
Sbjct: 118 V-----FQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLE-RIEDDTFQAT 170

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T L ++ L  N+L     + L  +  L   +   N L  ++         + +LD   N 
Sbjct: 171 TSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-TLAI----PIAVEELDASHNS 222

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           ++  +         L  L L  N LT     L N   ++ +D   N     +      ++
Sbjct: 223 IN-VVR--GPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L R+  S NN L  +    Q + +L+ L L HN L   +  +      LE+L L +N++
Sbjct: 279 RLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

Query: 320 SEIIPLSLEKLLYLNI 335
             +   +   L  L +
Sbjct: 337 VTLKLSTHHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (294), Expect = 4e-28
 Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 15/277 (5%)

Query: 61  SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF 120
           S++  +    D ++   T ++ F          K +    + +      ++ +F Q +E 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VEL 79

Query: 121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI 180
           + ++D  I    +        +  + +G N +          +  L  L    N+L    
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 181 PNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILY 239
             +  +   L  L +  N L       F   T+L+NL L SN LT +  S++ +L    +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---H 196

Query: 240 LDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI 299
            +   NL      S +     +  +D S N++   +   +     L  L L HN L    
Sbjct: 197 ANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLT-DT 247

Query: 300 PNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                +   L  +DLS N L +I+     K+  L  L
Sbjct: 248 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (252), Expect = 7e-23
 Identities = 56/300 (18%), Positives = 100/300 (33%), Gaps = 55/300 (18%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNN-------YVLGRLSSIVDELSLSDNYLTSSTPE 80
             N +  +      N+  L V  ++ N        +      +   LS+S+N L     +
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT-TLSMSNNNLERIEDD 165

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
                       L+ L +S N L             SL    +S   +S      +    
Sbjct: 166 T-----FQATTSLQNLQLSSNRLTHVDL---SLIP-SLFHANVSYNLLS-----TLAIPI 211

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
            +  +D   N +N    +      +L  L  + N L       L +   L ++DL  N+L
Sbjct: 212 AVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL 266

Query: 201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
              +   F  +  L  L++ +N L ++      +                       LKV
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---------------------TLKV 305

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
           L   D S N+LL  +         L+ L L HN +  ++        +L++L LS+N+  
Sbjct: 306 L---DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query: 132 ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF 191
           I   +        + +     +         L   + ++F+ + +      +L     + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
            L+L   ++       F     ++ L++  N +  +P                ++F    
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP---------------HVF---- 119

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
                N+ +LT +   RN+L             L  LS+ +N L+    ++F    SL++
Sbjct: 120 ----QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNI 335
           L LS+N L+ +    +  L + N+
Sbjct: 176 LQLSSNRLTHVDLSLIPSLFHANV 199

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 7e-15
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 1/159 (0%)

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDI 237
            I + L +  V + + +               L   + +   ++ +  +P ++L + + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
             L+                   + ++    N +    P   Q +  L  L L  N L  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                F +   L +L +SNNNL  I   + +    L  L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 15/121 (12%), Positives = 39/121 (32%)

Query: 216 NLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI 275
           N+     E   I S L        +             +   L     + F  + +    
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 276 PTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
              +   + ++ L+L   +++     +F    +++ L +  N +  + P   + +  L +
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 336 L 336
           L
Sbjct: 128 L 128

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  114 bits (286), Expect = 3e-28
 Identities = 56/199 (28%), Positives = 74/199 (37%), Gaps = 50/199 (25%)

Query: 375 FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA------ 428
            +  E     D      LIGRG +G+VYK  L D    A+KVF    + ++F        
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVF-SFANRQNFINEKNIYR 60

Query: 429 ----------------------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMI 460
                                       LV+EY  NGSL K L  S +  D +    +  
Sbjct: 61  VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL--SLHTSDWVSSCRLAH 118

Query: 461 DVTSALEYLH------FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
            VT  L YLH        Y   I H DL   N L+ ++    +SDFG++  LTG      
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRP 178

Query: 515 QTQTLAI------IGYMAP 527
             +  A       I YMAP
Sbjct: 179 GEEDNAAISEVGTIRYMAP 197

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (295), Expect = 4e-28
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 36/246 (14%)

Query: 90  CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGG 149
                 L++  + L   LP  +      +  + + D N++  +      L  L   ++ G
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPA---HITTLVIPDNNLT-SLPALPPELRTL---EVSG 90

Query: 150 NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFG 209
           N+L  S+ +    L +L   S     L             L +L + GN+L+ S+P    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP 141

Query: 210 NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRN 269
            L     L +  N+L S+P++   L     L  ++N     LP     L+ L+      +
Sbjct: 142 GLQ---ELSVSDNQLASLPALPSELC---KLWAYNNQLTS-LPMLPSGLQELS----VSD 190

Query: 270 NLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK 329
           N L  +PT    L  L   +     L             L+ L +S N L+  +P+   +
Sbjct: 191 NQLASLPTLPSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLTS-LPVLPSE 242

Query: 330 LLYLNI 335
           L  L +
Sbjct: 243 LKELMV 248

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (261), Expect = 6e-24
 Identities = 67/330 (20%), Positives = 115/330 (34%), Gaps = 51/330 (15%)

Query: 43  LSTLKVFDVDNNYVLGRLSSIVDE------LSLSDNYLTSSTPELSFLSSM--------- 87
            + +    + +N     L+S+         L +S N LTS       L  +         
Sbjct: 60  PAHITTLVIPDN----NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115

Query: 88  --SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI 145
             +    L KL I  N L   LP +       L+ + +SD  ++  +      L  L   
Sbjct: 116 LPALPSGLCKLWIFGNQL-TSLPVLPPG----LQELSVSDNQLAS-LPALPSELCKL--- 166

Query: 146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP 205
               N+L  S+ +    LQ+L   S   N+L  S+P +   L    +L    N+L+ S+P
Sbjct: 167 WAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLPSELY---KLWAYNNRLT-SLP 217

Query: 206 TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID 265
                 + L+ L +  N LTS+P +   LK    L    N     LP     L  L    
Sbjct: 218 ---ALPSGLKELIVSGNRLTSLPVLPSELK---ELMVSGNRLTS-LPMLPSGLLSL---- 266

Query: 266 FSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
               N L  +P ++  L S   ++L  N L      +  ++ S            ++   
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP-GYSGPIIRFDMAGA 325

Query: 326 SLEKLLYLNILLIVVVILALKFGLISRCQK 355
           S  +      L     ++  + G  +   +
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 1e-23
 Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 39/307 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           S N+L  +  +    L  L +F     ++    S +  +L +  N LTS           
Sbjct: 89  SGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLC-KLWIFGNQLTSLPVLPP----- 141

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
                L++L +S N L   LP +       L  +W  +  ++  +      L +L    +
Sbjct: 142 ----GLQELSVSDNQLAS-LPALPSE----LCKLWAYNNQLTS-LPMLPSGLQEL---SV 188

Query: 148 GGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTC 207
             N+L  S+     +L KL   + R   L             L +L + GN+L+ S+P  
Sbjct: 189 SDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-SLPVL 239

Query: 208 FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
              L     L +  N LTS+P +   L     L  + N     LP  + +L   T ++  
Sbjct: 240 PSELK---ELMVSGNRLTSLPMLPSGLL---SLSVYRNQLTR-LPESLIHLSSETTVNLE 292

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNR---LQGSIPNSFDDLVSLESLDLSNNNLSEIIP 324
            N L       ++ + S    S    R      S P     L    +  L      E  P
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

Query: 325 LSLEKLL 331
                + 
Sbjct: 353 ADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)

Query: 185 CHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWS 244
           C       L++  + L+ ++P C      +  L +  N LTS+P++   L+    L+   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELR---TLEVSG 90

Query: 245 NLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFD 304
           N     LP     L  L+       +L    P    GL     L +  N+L  S+P    
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHL----PALPSGLCK---LWIFGNQLT-SLPVLPP 141

Query: 305 DLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
               L+ L +S+N L+  +P    +L  L   
Sbjct: 142 ---GLQELSVSDNQLAS-LPALPSELCKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 203 SIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
            +  C         L++  + LT++P  L     I  L    N     LP+    L+ L 
Sbjct: 33  KMRACL--NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTS-LPALPPELRTL- 86

Query: 263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI 322
             + S  N L  +P    GL  L   S     L             L  L +  N L+  
Sbjct: 87  --EVS-GNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS- 135

Query: 323 IPLSLEKLLYLNI 335
           +P+    L  L++
Sbjct: 136 LPVLPPGLQELSV 148

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  111 bits (280), Expect = 9e-28
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 46/175 (26%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSN---------EDFR--------------- 427
           IG+G FG V+K RL  D    AIK      S          ++F+               
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86

Query: 428 ----------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +V+E+   G L   L    + +    +L +M+D+   +EY+    + PI
Sbjct: 87  KLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPPI 145

Query: 478 IHCDLKPHNKLLD-----DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +H DL+  N  L        + A ++DFG+++                   +MAP
Sbjct: 146 VHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV--HSVSGLLGNFQ---WMAP 195

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 8e-27
 Identities = 59/343 (17%), Positives = 124/343 (36%), Gaps = 45/343 (13%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD----------ELSLSDNYLTSS 77
           S NK+  I    +   + L+V  + ++    R+++I             L LSDN+L+S 
Sbjct: 34  SFNKITYIGHGDLRACANLQVLILKSS----RINTIEGDAFYSLGSLEHLDLSDNHLSSL 89

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE-I 136
           +              LK L++  NP        +     +L+ + + +      I     
Sbjct: 90  SSSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
             LT L  +++    L    S +L  ++ +  L+   +E    +      L+ +  L+LR
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSN-----------ELTSIPSILWNLKDILYLDF--- 242
              L+    +          +   +            EL  +   +  L ++ + D    
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 243 ---WSNLFVGPLPSKIGNLKV--LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
                N     + S++G ++   + R+   +  L  D+ T    L+ ++ +++ ++++  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPLS------LEKLLYLN 334
              +    L SLE LDLS N + E    +         L  L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 3e-26
 Identities = 50/340 (14%), Positives = 122/340 (35%), Gaps = 39/340 (11%)

Query: 28  SQNKLVGIVSITIF-NLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTP 79
             N    +   ++F NL+ L+   + N      +  I        +EL +    L +   
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           +     S+ + + +  L +  +    FL  +  +   S+ ++ + D N++      +   
Sbjct: 166 Q-----SLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 140 TDLISIDLGGNKLNG----------SISITLGKLQKLQFLSFRGNELEGSIPNVLC---- 185
                +     + +            +   + +L +++F     N L    P+       
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 186 ----HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILW-NLKDILYL 240
                   + +L +    L   + T +  L  ++ + ++++++  +P     +LK + +L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 241 DFWSNLF---VGPLPSKIGNLKVLTRIDFSRNNL--LGDIPTTIQGLKSLQFLSLGHNRL 295
           D   NL         +  G    L  +  S+N+L  +      +  LK+L  L +  N  
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 296 QGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
              +P+S      +  L+LS+  +  +     + L  L++
Sbjct: 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV 438

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 9e-24
 Identities = 56/301 (18%), Positives = 100/301 (33%), Gaps = 17/301 (5%)

Query: 25  TIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFL 84
            + S  K +      + + S  ++  +    +        D           S  ++   
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 85  SSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLIS 144
                   +++L I +  L   L  V     + ++ I + +  +         +L  L  
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 145 IDLGGNKLNGSI---SITLGKLQKLQFLSFRGNELE--GSIPNVLCHLAVLFQLDLRGNK 199
           +DL  N +       S   G    LQ L    N L        +L  L  L  LD+  N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGNL 258
               +P        +R L+L S  +  + + I   L+ +L +   SN  +      +  L
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE-VLDV---SNNNLDSFSLFLPRL 453

Query: 259 KVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNN 318
           + L     SRN L   +P        L  + +  N+L+      FD L SL+ + L  N 
Sbjct: 454 QEL---YISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 319 L 319
            
Sbjct: 509 W 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (250), Expect = 1e-22
 Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 7/235 (2%)

Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
           G    + S+DL  NK+       L     LQ L  + + +     +    L  L  LDL 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWS-NLFVGPLPS 253
            N LS    + FG L++L+ L+L  N   ++   S+  NL ++  L   +   F      
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLD 313
               L  L  ++    +L      +++ ++ +  L+L  +     +    D L S+  L+
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 314 LSNNNLSEIIPLSLEKLLYLNIL----LIVVVILALKFGLISRCQKRATKLPNVS 364
           L + NL+      L      + +        V+    F  + +  +   +L  V 
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 27/298 (9%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           L++ +  L LS N +T           +  C  L+ L +  + +   +         SLE
Sbjct: 24  LTAAMKSLDLSFNKITYIGH-----GDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLE 77

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEG 178
            + +SD ++S   S   G L+ L  ++L GN      ++     L  LQ L     E   
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 179 SIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKD 236
            I       L  L +L+++   L         ++  + +L L  +E   +       L  
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 237 ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL----------LGDIPTTIQGLKSLQ 286
           + YL+           S +   +V + +                 L  +   I  L  ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 287 FLSLGHNRLQGSIPNSFD--------DLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           F     N L    P+  D        + V++  L +    L   +      L  +  +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 57/298 (19%), Positives = 102/298 (34%), Gaps = 18/298 (6%)

Query: 4   EKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI 63
           +KL  R     +T +    +  +      +  V      L+ L  F+   + V+  L  +
Sbjct: 226 KKLAFRGSV--LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWM 123
            + +++   ++          +  S  + +K++ +  + +   +P       +SLEF+ +
Sbjct: 284 -ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341

Query: 124 SDCNISGGI---SEEIGNLTDLISIDLGGNKLN--GSISITLGKLQKLQFLSFRGNELEG 178
           S+  +       S   G    L ++ L  N L         L  L+ L  L    N    
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDIL 238
            +P+       +  L+L    +   + TC      L  L + +N L S    L  L+   
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTC--IPQTLEVLDVSNNNLDSFSLFLPRLQ--- 454

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
            L    N     LP       VL  +  SRN L          L SLQ + L  N   
Sbjct: 455 ELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 3/234 (1%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
              +    + +++ + +S   I+     ++    +L  + L  +++N         L  L
Sbjct: 17  FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG-SIPTCFGNLTALRNLHLDS-NEL 224
           + L    N L     +    L+ L  L+L GN      + + F NLT L+ L + +    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 225 TSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLK 283
           + I       L  +  L+  +          + +++ +  +    +     +      L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 284 SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILL 337
           S+++L L    L     +          +       S +   S  +LL L   +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 37/239 (15%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
            Q  L   +S     L  +K   V+N+            L S+   L LS+N +     +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE-FLDLSENLMVEEYLK 352

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIGN 138
            S  +       L+ L +S+N L   + +         +L  + +S       + +    
Sbjct: 353 NS--ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW 408

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF------- 191
              +  ++L    +     +     Q L+ L    N L+ S    L  L  L+       
Sbjct: 409 PEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLK 464

Query: 192 ------------QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDIL 238
                        + +  N+L       F  LT+L+ + L +N        +  L   L
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  107 bits (270), Expect = 2e-26
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 43/169 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNE----DFR--------------------- 427
           +     G ++K R Q G +  +KV      +     DF                      
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76

Query: 428 --------ALVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                    L+  +   GSL  VL+  +N+++D  Q +   +D+   + +LH      I 
Sbjct: 77  QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIP 135

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              L   + ++D+++ A +S   +        QS  +    A   ++AP
Sbjct: 136 RHALNSRSVMIDEDMTARISMADVKFSF----QSPGRMYAPA---WVAP 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (273), Expect = 2e-26
 Identities = 63/306 (20%), Positives = 103/306 (33%), Gaps = 52/306 (16%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD----------ELSLSDNYLTSS 77
             NK+  I      NL  L    + NN    ++S I             L LS N L   
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINN----KISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNI-SGGISE 134
             ++   +       L++L +  N +          F+    +  + +    + S GI  
Sbjct: 116 PEKM-PKT-------LQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 135 EI-GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQL 193
                +  L  I +    +    +I  G    L  L   GN++       L  L  L +L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS 253
            L  N +S        N   LR LHL++N+L  +P  L + K I  +   +N        
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-------- 273

Query: 254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI--PNSFDDLVSLES 311
              N+  +   DF         P       S   +SL  N +Q     P++F  +    +
Sbjct: 274 ---NISAIGSNDFCP-------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 312 LDLSNN 317
           + L N 
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 4e-25
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 11/233 (4%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
              LD+  N +         N    L  + + +  IS         L  L  + L  N+L
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI--PTCFGN 210
                +     + LQ L    NE+     +V   L  +  ++L  N L  S      F  
Sbjct: 113 K---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 211 LTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRN 269
           +  L  + +    +T+IP  +  +L + L+LD   N       + +  L  L ++  S N
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTE-LHLD--GNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 270 NLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI 322
           ++      ++     L+ L L +N+L   +P    D   ++ + L NNN+S I
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 113 NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR 172
           +       + + +  I+     +  NL +L ++ L  NK++         L KL+ L   
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI---PS 229
            N+L+  +P  +     L +L +  N+++    + F  L  +  + L +N L S      
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 230 ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFL 288
               +K + Y+          +P   G    LT +    N +   +   +++GL +L  L
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKL 221

Query: 289 SLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            L  N +      S  +   L  L L+NN L + +P  L    Y+ ++
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 26/283 (9%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
            L L +N +T             N K L  L +  N +   +          LE +++S 
Sbjct: 56  LLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI--PNV 183
             +   + E++     L  + +  N++          L ++  +    N L+ S      
Sbjct: 110 NQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 184 LCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDF 242
              +  L  + +    ++ +IP   G   +L  LHLD N++T + +  L  L ++  L  
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 243 WSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS 302
             N         + N   L  +  + N L+  +P  +   K +Q + L +N +  +I ++
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 281

Query: 303 -------FDDLVSLESLDLSNNNL--SEIIPLSLEKLLYLNIL 336
                       S   + L +N +   EI P +   +     +
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
           LR +      L  +P  L    D   LD  +N           NLK L  +    N +  
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
             P     L  L+ L L  N+L+  +P       +L+ L +  N ++++       L  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 334 NIL 336
            ++
Sbjct: 148 IVV 150

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  108 bits (271), Expect = 2e-26
 Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 44/177 (24%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFR----------------------- 427
             +G+G +G V++   Q G   A+K+F        FR                       
Sbjct: 14  ECVGKGRYGEVWRGSWQ-GENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDM 72

Query: 428 ---------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-----FGY 473
                     L+  Y   GSL   L      LD +  L I++ + S L +LH        
Sbjct: 73  TSRHSSTQLWLITHYHEMGSLYDYL--QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQG 130

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
              I H DLK  N L+  N    ++D G+A + +     +        +G   YMAP
Sbjct: 131 KPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN-PRVGTKRYMAP 186

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  108 bits (272), Expect = 2e-26
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 40/171 (23%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------ 420
            LIG+G FG VY  R     E AI++                                  
Sbjct: 39  ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96

Query: 421 -CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
            C +    A++       +L  V+  +  +LD+ +   I  ++   + YLH   +  I+H
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILH 153

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            DLK  N   D+  V  ++DFG+  +         + +     G   ++AP
Sbjct: 154 KDLKSKNVFYDNGKV-VITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAP 203

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  107 bits (270), Expect = 5e-26
 Identities = 40/176 (22%), Positives = 60/176 (34%), Gaps = 42/176 (23%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFR----------------------- 427
             IG+G +G V+  + + G + A+KVF  +     FR                       
Sbjct: 43  KQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADI 101

Query: 428 ---------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-----FGY 473
                     L+ +Y  NGSL   L   +  LD    L +     S L +LH        
Sbjct: 102 KGTGSWTQLYLITDYHENGSLYDYL--KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQG 159

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
              I H DLK  N L+  N    ++D G+A     +   +       +    YM P
Sbjct: 160 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPP 215

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (274), Expect = 6e-26
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 8/248 (3%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
             K+  +R  L   +P+       +  ++ + + NI    ++   +L  L  + LG N +
Sbjct: 56  FSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLT 212
                     L  L  L    N L         +L+ L +L LR N +       F  + 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 213 ALRNLHL-DSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           +L  L L +  +L  I       L ++ YL+         +P+ +  L  L  ++ S N+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNH 229

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
                P +  GL SL+ L + ++++     N+FD L SL  L+L++NNLS +       L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 331 LYLNILLI 338
            YL  L +
Sbjct: 290 RYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (252), Expect = 5e-23
 Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 5/229 (2%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNLTDLISIDLGGNK 151
            + L++  N +         +    LE + +   +I   I       L  L +++L  N 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNW 134

Query: 152 LNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL-RGNKLSGSIPTCFGN 210
           L    S     L KL+ L  R N +E         +  L +LDL    KL       F  
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           L  L+ L+L    +  +P+ L  L  +  L+   N F    P     L  L ++    + 
Sbjct: 195 LFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           +         GL SL  L+L HN L     + F  L  L  L L +N  
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 16/236 (6%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS--QSLEFIWM 123
            L+L +N +       +F     +  +L+ L + RN +   +    G F+   SL  + +
Sbjct: 79  YLNLMENNIQM-IQADTF----RHLHHLEVLQLGRNSI-RQIEV--GAFNGLASLNTLEL 130

Query: 124 SDCNISGGISEEI-GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS-FRGNELEGSIP 181
            D  ++  I       L+ L  + L  N +    S    ++  L  L      +LE    
Sbjct: 131 FDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYL 240
                L  L  L+L    +   +P     L  L  L +  N    I       L  +  L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
              ++       +    L  L  ++ + NNL          L+ L  L L HN   
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI----------VDELSLSDNYLTSS 77
            +N +  I       L++L   ++ +N     L+ I          + EL L +N + S 
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS--QSLEFIWMSDCNISGGISEE 135
            P  +F    +    L +LD+       ++    G F    +L+++ +  CNI       
Sbjct: 163 -PSYAF----NRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIKD--MPN 213

Query: 136 IGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL 195
           +  L  L  +++ GN        +   L  L+ L    +++     N    LA L +L+L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 196 RGNKLSGSIPTCFGNLTALRNLHLDSN 222
             N LS      F  L  L  LHL  N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  105 bits (264), Expect = 1e-25
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 35/165 (21%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNE----DFR--------------------- 427
           IG GSFG+VYK +     + A+K+ + +         F+                     
Sbjct: 32  IGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 428 -----ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                A+V ++    SL   L++S    ++ + ++I       ++YLH   +  IIH DL
Sbjct: 90  TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDL 146

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           K +N  L ++    + DFG+A   +    S    Q    I +MAP
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAP 191

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (272), Expect = 1e-25
 Identities = 61/305 (20%), Positives = 110/305 (36%), Gaps = 54/305 (17%)

Query: 40  IFNLSTLKVFDVDNNYVLGRLSSIVDE------LSLSDNYLTSSTPELSFLSSMSNCKYL 93
           + NL  L     DNN     L  + D       +   +N L         L  + N  +L
Sbjct: 191 LQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILEE-------LPELQNLPFL 239

Query: 94  KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLN 153
             +    N L     + + +   SLE + + D  ++  + E   +LT L   +   + L+
Sbjct: 240 TTIYADNNLL-----KTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 154 GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTA 213
                       L +L+   NE+  S+ ++   L  L   ++  NKL   +P     L  
Sbjct: 294 ELPP-------NLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALPPRLE- 340

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
              L    N L  +P +  NLK    L    N      P    +++ L       N+ L 
Sbjct: 341 --RLIASFNHLAEVPELPQNLK---QLHVEYNPLRE-FPDIPESVEDLRM-----NSHLA 389

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
           ++P   Q   +L+ L +  N L+   P+      S+E L +++  + +    + E    L
Sbjct: 390 EVPELPQ---NLKQLHVETNPLR-EFPDI---PESVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 334 NILLI 338
              + 
Sbjct: 443 EDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 2e-24
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 42/303 (13%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
           + ++              + V  + +            EL L++  L+S           
Sbjct: 42  AWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----AHELELNNLGLSSLPELPP----- 91

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDL 147
               +L+ L  S N L   LP +  +  +SL     +   +S            L  + +
Sbjct: 92  ----HLESLVASCNSLT-ELPELPQSL-KSLLVDNNNLKALSD-------LPPLLEYLGV 138

Query: 148 GGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTC 207
             N+L     +       L+ +    N L+  +P++   L     +    N+L   +P  
Sbjct: 139 SNNQLEKLPEL--QNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELPE- 190

Query: 208 FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
             NL  L  ++ D+N L  +P +  +L+    +   +N+       ++ NL  LT I   
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSL 327
            NNLL  +P       SL+ L++  N L   +P     L  L+  +   + LSE+ P +L
Sbjct: 246 -NNLLKTLP---DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-NL 299

Query: 328 EKL 330
             L
Sbjct: 300 YYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.4 bits (230), Expect = 3e-20
 Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 31/255 (12%)

Query: 91  KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGN 150
            +L++     + L   +P    N  +S    + +            G   ++    L   
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 151 KLNGSISITLGK---------LQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
               +  + L              L+ L    N L   +P +   L  L   +     LS
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 202 GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL 261
              P        L  L + +N+L  +P +  N   +  +D  +N     LP    +L+ +
Sbjct: 128 DLPPL-------LEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLKK-LPDLPPSLEFI 178

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
                + NN L ++P  +Q L  L  +   +N L+  +P+     +SLES+   NN L E
Sbjct: 179 A----AGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNNILEE 229

Query: 322 IIPLS-LEKLLYLNI 335
           +  L  L  L  +  
Sbjct: 230 LPELQNLPFLTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 210 NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS-- 267
           + T L+     S+ LT +P    N+K         + +    P   G  + +        
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 268 ----------RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
                      N  L  +P     L+S   L    N L   +P     L SL   + +  
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 318 NLSEIIPLSLEKL 330
            LS++ P  LE L
Sbjct: 125 ALSDLPP-LLEYL 136

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV---- 307
           P  + N  +        ++ L ++P   + +KS        +  + + P    +      
Sbjct: 5   PRNVSNTFLQE--PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 308 ---------SLESLDLSNNNLSEIIPLSLEKLLYLNI 335
                        L+L+N  LS  +P     L  L  
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSS-LPELPPHLESLVA 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (269), Expect = 3e-25
 Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 6/235 (2%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
           L  V    S +   + + +  I         +L  L  + L  N +          L  L
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHL-DSNEL 224
             L    N L         +L+ L +L LR N +  SIP+  F  + +LR L L +   L
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 225 TSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLK 283
           + I       L ++ YL+         +P+ +  L  L  +D S N+L    P + QGL 
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 284 SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI 338
            LQ L +  +++Q    N+FD+L SL  ++L++NNL+ +       L +L  + +
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 3e-23
 Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 5/229 (2%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNLTDLISIDLGGNK 151
            + L++  N +         +    LE + +S  +I   I       L +L +++L  N+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNR 123

Query: 152 LNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL-RGNKLSGSIPTCFGN 210
           L    +     L KL+ L  R N +E         +  L +LDL    +LS      F  
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           L+ LR L+L    L  IP+ L  L  +  LD   N      P     L  L ++   ++ 
Sbjct: 184 LSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           +          L+SL  ++L HN L     + F  L  LE + L +N  
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 24/230 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD----------ELSLSDNYLTSS 77
            +N++  I   +  +L  L++  +  N     + +I             L L DN LT+ 
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRN----HIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI- 136
                    +S    LK+L +  NP++  +P    N   SL  + + +      ISE   
Sbjct: 128 PNGA--FVYLSK---LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
             L++L  ++L    L   I   L  L KL  L   GN L    P     L  L +L + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSN 245
            +++       F NL +L  ++L  N LT +P  +   L  +  +    N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 206 TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID 265
           +C    + +         L  +P  +    +   L+   N       +   +L+ L  + 
Sbjct: 40  SCSNQFSKVI---CVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 266 FSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
            SRN++         GL +L  L L  NRL      +F  L  L+ L L NN +  I   
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 326 SLEKLLYLNIL 336
           +  ++  L  L
Sbjct: 155 AFNRIPSLRRL 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 4e-25
 Identities = 58/202 (28%), Positives = 80/202 (39%), Gaps = 4/202 (1%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
                I L GN+++   + +    + L  L    N L          LA+L QLDL  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 200 LSGSIP-TCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKI-G 256
              S+    F  L  L  LHLD   L  +   +   L  + YL    N     LP     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
           +L  LT +    N +        +GL SL  L L  NR+    P++F DL  L +L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 317 NNLSEIIPLSLEKLLYLNILLI 338
           NNLS +   +L  L  L  L +
Sbjct: 211 NNLSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 4/210 (1%)

Query: 113 NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR 172
               + + I++    IS   +       +L  + L  N L    +     L  L+ L   
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 173 GNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPS- 229
            N    S+       L  L  L L    L   +    F  L AL+ L+L  N L ++P  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 230 ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLS 289
              +L ++ +L    N            L  L R+   +N +    P   + L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 290 LGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           L  N L      +   L +L+ L L++N  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 10/183 (5%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
            L L  N L          + ++    L++LD+S N     +     +    L  + +  
Sbjct: 60  ILWLHSNVLARIDAAA--FTGLAL---LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 126 CNISGGISEEI-GNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNV 183
           C +   +   +   L  L  + L  N L  ++   T   L  L  L   GN +       
Sbjct: 115 CGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 184 LCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDF 242
              L  L +L L  N+++   P  F +L  L  L+L +N L+++P+  L  L+ + YL  
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 243 WSN 245
             N
Sbjct: 233 NDN 235

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  102 bits (257), Expect = 8e-25
 Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 48/176 (27%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN------EDFR------------------- 427
           IG G FG VY+A    G E A+K              E+ R                   
Sbjct: 15  IGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 428 --------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                    LV+E+   G L +VL      +     +N  + +   + YLH     PIIH
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVLSGKR--IPPDILVNWAVQIARGMNYLHDEAIVPIIH 131

Query: 480 CDLKPHNKLLD--------DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DLK  N L+          N +  ++DFG+A+        M+     A   +MAP
Sbjct: 132 RDLKSSNILILQKVENGDLSNKILKITDFGLAREWH-RTTKMSAAGAYA---WMAP 183

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (267), Expect = 9e-25
 Identities = 60/360 (16%), Positives = 116/360 (32%), Gaps = 61/360 (16%)

Query: 43  LSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELS----FLSSMSNC--KYLKKL 96
           L     F +  N     +S    +   + +               +S +  C      +L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
            ++R  L   LP    N    +  + ++   +   + E   +L  L   D   N+L+   
Sbjct: 65  QLNRLNLS-SLPD---NLPPQITVLEITQNALIS-LPELPASLEYL---DACDNRLS--- 113

Query: 157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN 216
                                 ++P +   L     LD+  N+L+  +P     L     
Sbjct: 114 ----------------------TLPELPASLK---HLDVDNNQLT-MLPELPALL---EY 144

Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
           ++ D+N+LT +P +  +L+ +L +    N  +  LP    +L+ L        NLL  +P
Sbjct: 145 INADNNQLTMLPELPTSLE-VLSV---RNNQLTFLPELPESLEAL----DVSTNLLESLP 196

Query: 277 TTIQGLKSLQ----FLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLY 332
                    +    F     NR+   IP +   L    ++ L +N LS  I  SL +   
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 333 LNILLIVVVILALKFGLISRCQK--RATKLPNVSNMQPQASRRRFSYQELLRATDGFSAN 390
                   +  ++  G  +   +             +     + +   E     + FSA 
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  104 bits (260), Expect = 1e-24
 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 42/176 (23%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFR----------------------- 427
             IG+G FG V++ + + G E A+K+F        FR                       
Sbjct: 48  ESIGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 106

Query: 428 ---------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-----FGY 473
                     LV +Y  +GSL   L  + Y + +   + + +   S L +LH        
Sbjct: 107 KDNGTWTQLWLVSDYHEHGSLFDYL--NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQG 164

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
              I H DLK  N L+  N    ++D G+A        ++       +    YMAP
Sbjct: 165 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 220

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (260), Expect = 5e-24
 Identities = 54/305 (17%), Positives = 99/305 (32%), Gaps = 38/305 (12%)

Query: 35  IVSITIFNLSTLKVFDVDNNYV----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNC 90
           I ++ +   + L     D+N +    +  L+ +   L+   N LT            S  
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT-YLNCDTNKLTKLDV--------SQN 126

Query: 91  KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGN 150
             L  L+ +RN L       V + +Q L  +             ++   T L ++D   N
Sbjct: 127 PLLTYLNCARNTLTEI---DVSHNTQ-LTELDCHLNKKIT--KLDVTPQTQLTTLDCSFN 180

Query: 151 KLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGN 210
           K+     + + + + L  L+   N +   +   L     L  LD   NKL+  I      
Sbjct: 181 KIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           LT L       N LT +   +  L  +  L       +  +   + +   L         
Sbjct: 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLE-ID--LTHNTQLIYFQAEGCR 286

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
            + ++   +     L  L      +   +         L  L L+N  L+E+      KL
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELDVSHNTKL 341

Query: 331 LYLNI 335
             L+ 
Sbjct: 342 KSLSC 346

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 55/315 (17%), Positives = 104/315 (33%), Gaps = 61/315 (19%)

Query: 26  IDSQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPE 80
           + +  ++    +I+   L+TL   D  N+ +     + +L+ +  +L  + N +T+    
Sbjct: 24  VAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLT-KLICTSNNITT---- 78

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT 140
           L      S    L  L    N L       V   +  L ++      ++     ++    
Sbjct: 79  LDL----SQNTNLTYLACDSNKLTNL---DVTPLT-KLTYLNCDTNKLT---KLDVSQNP 127

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
            L  ++   N L     I +    +L  L    N+    +   +     L  LD   NK+
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV 260
           +  +         L  L+ D+N +T +                           +     
Sbjct: 183 T-ELD--VSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQ 213

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
           LT +D S +N L +I   +  L  L +     N L   +  S   L  L +L     +L 
Sbjct: 214 LTFLDCS-SNKLTEID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL 267

Query: 321 EIIPLSLEKLLYLNI 335
           EI      +L+Y   
Sbjct: 268 EIDLTHNTQLIYFQA 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 18/218 (8%)

Query: 118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE 177
                 +   +    +     L  L S+D   + +   ++  + KL  L  L    N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

Query: 178 GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDI 237
            ++   L     L  L    NKL+ ++      LT L  L+ D+N+LT +   +     +
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
            YL+   N     +   + +   LT +D   N  +  +   +     L  L    N++  
Sbjct: 130 TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 298 SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
                      L  L+   NN++++      +L +L+ 
Sbjct: 185 L---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDC 219

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 52/297 (17%), Positives = 96/297 (32%), Gaps = 43/297 (14%)

Query: 35  IVSITIFNLSTLKVFDVDNNYVLGRLSSI----VDELSLSDNYLTSSTPELSFLSSMSNC 90
           +  I + + + L   D   N  + +L       +  L  S N +T           +S  
Sbjct: 139 LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--------DVSQN 190

Query: 91  KYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIGNLTDLISIDLG 148
           K L +L+   N +         + +Q   L F+  S   ++     ++  LT L   D  
Sbjct: 191 KLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCS 241

Query: 149 GNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCF 208
            N L     + +  L KL  L     +L   I   L H   L      G +    +    
Sbjct: 242 VNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--V 293

Query: 209 GNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR 268
            + T L  L   +  +T +   L     ++YL   +      L   + +   L  +    
Sbjct: 294 THNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVN 348

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP-----NSFDDLVSLESLDLSNNNLS 320
            ++  D  + +  + +L        +           NS    VS + LD   N ++
Sbjct: 349 AHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 1e-23
 Identities = 59/306 (19%), Positives = 105/306 (34%), Gaps = 53/306 (17%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD----------ELSLSDNYLTSS 77
             N +  +       L  L    + NN    ++S I +          +L +S N+L   
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNN----KISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNI-SGGISE 134
            P L           L +L I  N +        G FS   ++  I M    + + G   
Sbjct: 118 PPNLP--------SSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 135 EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQL 193
              +   L  + +   KL     I     + L  L    N+++ +I    L   + L++L
Sbjct: 167 GAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS 253
            L  N++          L  LR LHLD+N+L+ +P+ L +LK +  +   +N        
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-------- 274

Query: 254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI--PNSFDDLVSLES 311
              N+  +   DF                     +SL +N +      P +F  +    +
Sbjct: 275 ---NITKVGVNDFCPVGFGV-------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 312 LDLSNN 317
           +   N 
Sbjct: 325 IQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 54/228 (23%), Positives = 87/228 (38%), Gaps = 13/228 (5%)

Query: 113 NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR 172
             S     + + + +IS    ++   L  L ++ L  NK++         L+KLQ L   
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI---PS 229
            N L   IP  L   + L +L +  N++       F  L  +  + +  N L +    P 
Sbjct: 111 KNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 230 ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFL 288
               LK + YL        G +P      + L  +    N +   I    +     L  L
Sbjct: 168 AFDGLK-LNYLRISEAKLTG-IPK--DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRL 222

Query: 289 SLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            LGHN+++     S   L +L  L L NN LS  +P  L  L  L ++
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVV 269

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 48/247 (19%), Positives = 83/247 (33%), Gaps = 10/247 (4%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
              LD+  N +              L  + + +  IS    +    L  L  + +  N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI--PTCFGN 210
                I       L  L    N +      V   L  +  +++ GN L  S   P  F  
Sbjct: 115 V---EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           L  L  L +   +LT IP  L   + +  L    N         +     L R+    N 
Sbjct: 172 LK-LNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
           +      ++  L +L+ L L +N+L   +P    DL  L+ + L  NN++++       +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287

Query: 331 LYLNILL 337
            +     
Sbjct: 288 GFGVKRA 294

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 58/264 (21%), Positives = 93/264 (35%), Gaps = 47/264 (17%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
            L L +N ++    + +F    S  + L+KL IS+N L      +  N   SL  + + D
Sbjct: 82  ALVLVNNKISKIHEK-AF----SPLRKLQKLYISKNHLV----EIPPNLPSSLVELRIHD 132

Query: 126 CNISGGISEEI-GNLTDLISIDLGGNKL-NGSISITLGKLQKLQFLSFRGNELEGSIPNV 183
             I   + + +   L ++  I++GGN L N           KL +L     +L   IP  
Sbjct: 133 NRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD 190

Query: 184 LCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDF 242
           L     L +L L  NK+  +I        + L  L L  N++  I +             
Sbjct: 191 L--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN------------- 234

Query: 243 WSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS 302
                          L  L  +    N L   +P  +  LK LQ + L  N +     N 
Sbjct: 235 --GSL--------SFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 303 FDDL------VSLESLDLSNNNLS 320
           F  +           + L NN + 
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 5/123 (4%)

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
           LR +      L ++P  +    D   LD  +N            L+ L  +    N +  
Sbjct: 35  LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
                   L+ LQ L +  N L    PN      SL  L + +N + ++       L  +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 334 NIL 336
           N +
Sbjct: 150 NCI 152

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 7e-23
 Identities = 52/273 (19%), Positives = 98/273 (35%), Gaps = 22/273 (8%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           L+  V  L LS+N +T  +      S +  C  L+ L ++ N ++        +    LE
Sbjct: 50  LTEAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LE 103

Query: 120 FIWMSDCNISGGISEEI-GNLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELE 177
            + +S   +S  +S      L+ L  ++L GN       +     L KLQ L     +  
Sbjct: 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 178 GSIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILW-NLK 235
             I       L  L +L++  + L    P    ++  + +L L   +   +  I      
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 236 DILYLDFWSNLFVGPLPSKI--------GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF 287
            +  L+           S++                +  +  +L   +   +  +  L  
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 288 LSLGHNRLQGSIPNS-FDDLVSLESLDLSNNNL 319
           L    N+L+ S+P+  FD L SL+ + L  N  
Sbjct: 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.2 bits (237), Expect = 2e-21
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 13/209 (6%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
             + S+DL  N++    +  L +   LQ L    N +     +    L  L  LDL  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 200 LSGSIPT-CFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWSNLFVGPLPSKI- 255
           LS ++ +  F  L++L  L+L  N   ++   S+  +L  +  L   +      +  K  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS 315
             L  L  ++   ++L    P +++ ++++  L L   +    +    D   S+E L+L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 316 NNNL--------SEIIPLSLEKLLYLNIL 336
           + +L        S     SL K      +
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNV 259

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 33/218 (15%)

Query: 28  SQNKLVGIVSITIF-NLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTP 79
             N    +   ++F +L+ L++  V N     ++           +EL +  + L S  P
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
           +     S+ + + +  L +        L  +  + + S+E + + D ++         + 
Sbjct: 192 K-----SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF------HF 239

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           ++L + +             L K    + +      L   +  +L  ++ L +L+   N+
Sbjct: 240 SELSTGETNS----------LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 200 LSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKD 236
           L  S+P   F  LT+L+ + L +N        +  L  
Sbjct: 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 99.8 bits (249), Expect = 9e-23
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 37/174 (21%)

Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFAIKV---------------------------FHF 419
           F   +++G G+ G++    + D  + A+K                            +  
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFC 85

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
           +  +  F+ + +E     +L++ +   ++    L+ + ++   TS L +LH   S  I+H
Sbjct: 86  TEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVH 141

Query: 480 CDLKPHNKLL-----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA-IIGYMAP 527
            DLKPHN L+        I A +SDFG+ K L     S ++   +    G++AP
Sbjct: 142 RDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAP 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 18/254 (7%)

Query: 84  LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI 143
           +          K+   ++ +   +     +    +  +      ++    E +  L +LI
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADLDG-ITTLSAFGTGVTT--IEGVQYLNNLI 66

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
            ++L  N++   ++  L  L K+  L   GN L+ ++   +  L  +  LDL   +++  
Sbjct: 67  GLELKDNQIT-DLA-PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDV 122

Query: 204 IPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTR 263
            P     L+ L+ L+LD N++T+I   L  L ++ YL   +        + + NL  LT 
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177

Query: 264 IDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII 323
           +    +N + DI   +  L +L  + L +N++    P    +  +L  + L+N  ++   
Sbjct: 178 LKAD-DNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 324 PLSLEKLLYLNILL 337
                 L+  N++ 
Sbjct: 234 VFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 26/270 (9%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
           +++   + +T          + ++   +  L      +       V   +  L  + + D
Sbjct: 23  KIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTIEG--VQYLNN-LIGLELKD 72

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
             I+      + NLT +  ++L GN L  ++S  +  LQ ++ L     ++    P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN 245
            L+ L  L L  N+++   P     LT L+ L + + +++ +   L NL  +  L    N
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN 183

Query: 246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD 305
                  S + +L  L  +    NN + D+   +    +L  ++L +  +        ++
Sbjct: 184 KISDI--SPLASLPNLIEVHLK-NNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 306 LVSLESLDLSNNNLSEIIPLSL-EKLLYLN 334
           LV      +   + + I P ++ +   Y +
Sbjct: 240 LVVP--NVVKGPSGAPIAPATISDNGTYAS 267

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 95.5 bits (238), Expect = 6e-22
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 45/177 (25%)

Query: 393 IGRGSFGSVYKARL-QDGMEFAIKVF---------------------------HF--SCS 422
           +G+G FG   K    + G    +K                              F     
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            +     + EY   G+L  ++ S +      QR++   D+ S + YLH   S  IIH DL
Sbjct: 78  KDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDL 134

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ---------TLAIIG---YMAP 527
             HN L+ +N    ++DFG+A+L+  E       +            ++G   +MAP
Sbjct: 135 NSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAP 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 9e-22
 Identities = 76/329 (23%), Positives = 128/329 (38%), Gaps = 45/329 (13%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY---------VLGRLSSIVDELSLSDNYLTSST 78
             N+ + + +     L+ L+V  +                 L+S ++ L L DN +    
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQ 145

Query: 79  PELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ------SLEFIWMSDCNISGGI 132
           P   F  +M        LD++ N +       + NF         L  I + D N     
Sbjct: 146 PASFF-LNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 133 SEEIGN---LTDLISIDLGGNKLNGSIS---ITLGKLQKLQFLSFRGNELEG-------- 178
            E+ GN    T + ++DL GN    S++          K+Q L    +   G        
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 179 -SIPNVLCH---LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWN 233
               N        + +   DL  +K+   + + F + T L  L L  NE+  I     W 
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 234 LKDILYLDFWSNLFVGPLPSKI-GNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLG 291
           L  +L L+   N   G + S++  NL  L  +D S N++   +   +  GL +L+ L+L 
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALD 379

Query: 292 HNRLQGSIPNS-FDDLVSLESLDLSNNNL 319
            N+L+ S+P+  FD L SL+ + L  N  
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 54/304 (17%), Positives = 98/304 (32%), Gaps = 38/304 (12%)

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWM 123
           V+ + LS N +          +S S  + L+ L + +      +         SL  + +
Sbjct: 32  VNYVDLSLNSIAELNE-----TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 124 SDCNISGGISEEI-GNLTDLISIDLGGNKLNGSI--SITLGKLQKLQFLSFRGNELEGSI 180
                   +       L +L  + L    L+G++        L  L+ L  R N ++   
Sbjct: 87  DYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 181 PN-VLCHLAVLFQLDLRGNKLSGSIPTCFGNLTA--LRNLHLDSNELTSIPSI------- 230
           P     ++     LDL  NK+         N        L L S  L  +          
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 231 --LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRI-------------DFSRNNLLGDI 275
              +    I  LD   N F   +  +  +    T+I              F   N     
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 276 PTTIQGLK--SLQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNNNLSEIIPLSLEKLLY 332
             T +GL+   ++   L  +++  ++    F     LE L L+ N +++I   +   L +
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324

Query: 333 LNIL 336
           L  L
Sbjct: 325 LLKL 328

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 7e-18
 Identities = 43/240 (17%), Positives = 72/240 (30%), Gaps = 23/240 (9%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGN 198
             +  +DL  N +      +  +LQ LQFL          I  N    L+ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 199 KLSGSIPT-CFGNLTALRNLHLDSNELTSI---PSILWNLKDILYLDFWSNLFVGPLPSK 254
           +    + T  F  L  L  L L    L       +    L  +  L    N      P+ 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 255 I-GNLKVLTRIDFSRNNL----------LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF 303
              N++    +D + N +                T+  L S+    +    L      + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 304 DDLVSLESLDLSNNNLSEIIP------LSLEKLLYLNILLIVVVILALKFGLISRCQKRA 357
               S+ +LDLS N   E +       ++  K+  L +     +  +             
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT-TI 279
           +  L  +P +  ++    Y+D   N       +    L+ L  +   +      I   T 
Sbjct: 19  NRGLHQVPELPAHVN---YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 280 QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII 323
           +GL SL  L L +N+       +F+ L +LE L L+  NL   +
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 35/230 (15%)

Query: 6   LNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVD 65
           L+       M       I     Q+ ++        +       D DN    G  +S V 
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
              LS + +  +  +  F    S+   L++L +++N +              ++      
Sbjct: 279 TCDLSKSKIF-ALLKSVF----SHFTDLEQLTLAQNEI------------NKID------ 315

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVL 184
                        LT L+ ++L  N L    S     L KL+ L    N +  ++     
Sbjct: 316 -------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSF 367

Query: 185 CHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELT-SIPSILW 232
             L  L +L L  N+L  S+P   F  LT+L+ + L +N    S P I +
Sbjct: 368 LGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 51/175 (29%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHF------------------------SCSNED 425
             +GRGSFG V++ +  Q G + A+K                            +     
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGP 123

Query: 426 FRALVLEYTTNGSLEKVL---------YSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
           +  + +E    GSL +++          +  Y+   L+           LEYLH   +  
Sbjct: 124 WVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALE----------GLEYLH---TRR 170

Query: 477 IIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           I+H D+K  N LL  +   A L DFG A  L  +    +      I G   +MAP
Sbjct: 171 ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAP 225

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.3 bits (230), Expect = 4e-21
 Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGN 198
               ++DL  N L    S +     +LQ L     E++ +I       L+ L  L L GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 199 KLSGSIPT-CFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSN-LFVGPLPSKI 255
            +  S+    F  L++L+ L      L S+ +  + +LK +  L+   N +    LP   
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 256 GNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQF----LSLGHNRLQGSIPNSFDDLVSLE 310
            NL  L  +D S N  +  I    ++ L  +      L L  N +    P +F ++  L+
Sbjct: 146 SNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 203

Query: 311 SLDLSNNNLSEIIPLSLEKLLYLNIL 336
            L L  N L  +     ++L  L  +
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKI 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 9/152 (5%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPL 251
           LDL  N L       F +   L+ L L   E+ +I      +L  +  L    N  +  L
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSL 91

Query: 252 PSKI-GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP--NSFDDLVS 308
                  L  L ++     NL       I  LK+L+ L++ HN +Q S      F +L +
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

Query: 309 LESLDLSNNNLSEIIP---LSLEKLLYLNILL 337
           LE LDLS+N +  I       L ++  LN+ L
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 32/231 (13%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG---NLTDLISIDLGG 149
            K LD+S NPL         +F + L+ + +S C I    + E G   +L+ L ++ L G
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTG 85

Query: 150 NKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPT-- 206
           N +          L  LQ L      L  S+    + HL  L +L++  N +  S     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143

Query: 207 CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDF 266
            F NLT L +L L SN++ SI                           +  + +L     
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYC---------------TDL-----RVLHQMPLLNLSLD 183

Query: 267 SRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
              N +  I         L+ L+L  N+L+      FD L SL+ + L  N
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 53/235 (22%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI----------VDELSLSDNYLTSS 77
           S N L  + S + F+   L+V D+        + +I          +  L L+ N + S 
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG 137
                     S    L+KL      L             SLE             +  IG
Sbjct: 92  ALGAF-----SGLSSLQKLVAVETNL------------ASLE-------------NFPIG 121

Query: 138 NLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVL----F 191
           +L  L  +++  N +           L  L+ L    N+++ SI    L  L  +     
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSN 245
            LDL  N ++   P  F  +  L+ L LD+N+L S+P  I   L  +  +   +N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
           ++P       S + L L  N L+     SF     L+ LDLS   +  I   + + L +L
Sbjct: 25  NLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 334 NIL 336
           + L
Sbjct: 79  STL 81

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.1 bits (229), Expect = 6e-21
 Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 30/185 (16%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
            D   + L  N L      TL    +L  L+    EL   +  V   L VL  LDL  N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ 88

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           L  S+P     L AL  L +  N LTS+P                          +G L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPL---------------GAL-----RGLGELQ 127

Query: 260 VLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIP-NSFDDLVSLESLDLSNN 317
            L    + + N L  +P  +      L+ LSL +N L   +P    + L +L++L L  N
Sbjct: 128 EL----YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 318 NLSEI 322
           +L  I
Sbjct: 183 SLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.7 bits (215), Expect = 4e-19
 Identities = 47/146 (32%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
            L L  N L           T L  L+LD  ELT +  +   L  +  LD   N     L
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS-L 92

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS-FDDLVSLE 310
           P     L  LT +D S N L       ++GL  LQ L L  N L+ ++P         LE
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151

Query: 311 SLDLSNNNLSEIIPLSLEKLLYLNIL 336
            L L+NNNL+E+    L  L  L+ L
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 15/184 (8%)

Query: 65  DELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMS 124
             L LS+N L + +      +++     L +L++ R  L   L   V      L  + +S
Sbjct: 34  TILHLSENLLYTFSL-----ATLMPYTRLTQLNLDRAEL-TKLQ--VDGTLPVLGTLDLS 85

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIP-N 182
              +   +      L  L  +D+  N+L  S+ +  L  L +LQ L  +GNEL+ ++P  
Sbjct: 86  HNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPG 142

Query: 183 VLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLD 241
           +L     L +L L  N L+  +P      L  L  L L  N L +IP   +    + +  
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 242 FWSN 245
              N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 14/137 (10%)

Query: 205 PTC-FGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT 262
           P C    + +   ++ D   LT++P  +  +      L    NL      + +     LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLT 58

Query: 263 RIDFSRNNLLGDIPTTIQ---GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
           +++  R  L     T +Q    L  L  L L HN+LQ S+P     L +L  LD+S N L
Sbjct: 59  QLNLDRAEL-----TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

Query: 320 SEIIPLSLEKLLYLNIL 336
           + +   +L  L  L  L
Sbjct: 113 TSLPLGALRGLGELQEL 129

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 92.0 bits (229), Expect = 8e-21
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 50/215 (23%)

Query: 352 RCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGM 410
             Q +  + P V   QPQ + R       L     F     IGRG F  VY+A  L DG+
Sbjct: 2   DEQSQGMQGPPVPQFQPQKALRPDMGYNTL---ANFRIEKKIGRGQFSEVYRAACLLDGV 58

Query: 411 EFAIK-VFHFSCSNEDFRA-------------------------------LVLEYTTNGS 438
             A+K V  F   +   RA                               +VLE    G 
Sbjct: 59  PVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGD 118

Query: 439 LEKVL---YSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA 495
           L +++        ++         + + SALE++H   S  ++H D+KP N  +    V 
Sbjct: 119 LSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVV 175

Query: 496 HLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            L D G+ +  + +  +   +     +G   YM+P
Sbjct: 176 KLGDLGLGRFFSSKT-TAAHSL----VGTPYYMSP 205

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.5 bits (235), Expect = 8e-21
 Identities = 49/306 (16%), Positives = 103/306 (33%), Gaps = 14/306 (4%)

Query: 42  NLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN 101
              T K F    +  +  ++++              +  LS L+ +     L  L ++  
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 102 PLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIG-----NLTDLISIDLGGNKLNG 154
                    +       ++ +  +S+  + G +          +L  L    +  +    
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 155 SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL 214
             S        +   +F  +            ++    LD   N L+ ++    G+LT L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 215 RNLHLDSNELTSIP---SILWNLKDILYLDFWSNLFVGPLPSKI-GNLKVLTRIDFSRNN 270
             L L  N+L  +     +   +K +  LD   N              K L  ++ S N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL 330
           L   I   +     ++ L L  N+++ SIP     L +L+ L++++N L  +     ++L
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467

Query: 331 LYLNIL 336
             L  +
Sbjct: 468 TSLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 8e-19
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 32/262 (12%)

Query: 62  SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFI 121
           + V   S+S+  L        F  S ++ K L    +  +        +   FS  +   
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN-MNIK 305

Query: 122 WMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE--GS 179
             +              ++  + +D   N L  ++    G L +L+ L  + N+L+    
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 180 IPNVLCHLAVLFQLDLRGNKLSGSIPTC-FGNLTALRNLHLDSNELTSIPSILWNLKDIL 238
           I  +   +  L QLD+  N +S            +L +L++ SN LT             
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--------- 416

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
                       LP +      +  +D   N +   IP  +  L++LQ L++  N+L+ S
Sbjct: 417 ----------RCLPPR------IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S 458

Query: 299 IPN-SFDDLVSLESLDLSNNNL 319
           +P+  FD L SL+ + L  N  
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.1 bits (200), Expect = 2e-16
 Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 42/338 (12%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNY-------VLGRLSSIVDELSLSDNYLTSSTPE 80
           SQN +  + +  I +LS L++  + +N        V      + + L LS N L      
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL-EYLDLSHNKLVK---- 83

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIGN 138
           +S          LK LD+S N  D  LP     F     L+F+ +S  ++       I +
Sbjct: 84  ISC----HPTVNLKHLDLSFNAFDA-LPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR-- 196
           L     + + G             LQ     S           + +  ++V    +L   
Sbjct: 138 LNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 197 --------------GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLK----DIL 238
                          + L+        +   L N+    N    I  ++W+       I 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
            +     L          +LK L+      +          +   ++   +   +  +  
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 299 IPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
                  +     LD SNN L++ +  +   L  L  L
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 7/212 (3%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
                +++  N ++   +  +  L KL+ L    N ++    +V      L  LDL  NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           L   I         L++L L  N   ++P      N+  + +L   +          I +
Sbjct: 81  LV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
           L +   +                GL+     SL          +   D+      +L  +
Sbjct: 138 LNISKVLLVLGETYGEKEDPE--GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 318 NLSEIIPLSLEKLLYLNILLIVVVILALKFGL 349
           N+  ++  +        +  +          L
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 28/296 (9%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           LS     L++S NY++         S + +   L+ L IS N +   L   V  F+Q LE
Sbjct: 19  LSQKTTILNISQNYISELWT-----SDILSLSKLRILIISHNRIQY-LDISVFKFNQELE 72

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEG 178
           ++ +S   +            +L  +DL  N  +   I    G + +L+FL      LE 
Sbjct: 73  YLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 179 SIPNVLCHLAVL-FQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDI 237
           S    + HL +    L L         P    +        +          +  ++K +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 238 LYLDF---------WSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGL---KSL 285
             L+              +   + +K+     L+ +  +      +    I  L    ++
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 286 QFLSLGHNRLQG-----SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            + S+ + +LQG         S   L +L    + ++          E    +NI 
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
           +    N L  +P                      L  K       T ++ S+N +     
Sbjct: 5   VDRSKNGLIHVPK--------------------DLSQK------TTILNISQNYISELWT 38

Query: 277 TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
           + I  L  L+ L + HNR+Q    + F     LE LDLS+N L +I       L +L++
Sbjct: 39  SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSL 327
             N L  +P  +   +    L++  N +     +    L  L  L +S+N +  +     
Sbjct: 8   SKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65

Query: 328 EKLLYLNIL 336
           +    L  L
Sbjct: 66  KFNQELEYL 74

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 91.9 bits (229), Expect = 9e-21
 Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 48/174 (27%)

Query: 392 LIGRGSFGSVYKARLQD---GMEFAIKVFHFS-CSNEDFRA------------------- 428
           L+GRG  G VY+A   D       A+K+   +  S+  FR                    
Sbjct: 41  LVGRGGMGDVYEAE--DTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVP 98

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       + +       L  +L      L   + + I+  + SAL+  H   +  
Sbjct: 99  IHDFGEIDGQLYVDMRLINGVDLAAML-RRQGPLAPPRAVAIVRQIGSALDAAH---AAG 154

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             H D+KP N L+  +  A+L DFGIA   T  D+ +TQ      +G   YMAP
Sbjct: 155 ATHRDVKPENILVSADDFAYLVDFGIASATT--DEKLTQLGN--TVGTLYYMAP 204

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 40/169 (23%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
            +G GS+G V+K R  +DG  +A+K           RA                      
Sbjct: 64  RLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLE 123

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                     L  E     SL++   +    L   Q    + D   AL +LH   S  ++
Sbjct: 124 QAWEEGGILYLQTEL-CGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLV 179

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H D+KP N  L       L DFG+   L        Q        YMAP
Sbjct: 180 HLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGD---PRYMAP 225

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 44/172 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFS-CSNEDFRA--------------------- 428
            +G G   +VY A      ++ AIK         E+                        
Sbjct: 18  KLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMI 77

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                     LV+EY    +L + +  S+  L +   +N    +   +++ H      I+
Sbjct: 78  DVDEEDDCYYLVMEYIEGPTLSEYI-ESHGPLSVDTAINFTNQILDGIKHAH---DMRIV 133

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           H D+KP N L+D N    + DFGIAK L+  + S+TQT    ++G   Y +P
Sbjct: 134 HRDIKPQNILIDSNKTLKIFDFGIAKALS--ETSLTQTNH--VLGTVQYFSP 181

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 89.6 bits (223), Expect = 4e-20
 Identities = 46/178 (25%), Positives = 63/178 (35%), Gaps = 47/178 (26%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
            IG GS+G   K R   DG     K   +    E  +                       
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 72

Query: 429 -----------LVLEYTTNGSLEKVL---YSSNYILDILQRLNIMIDVTSALEYLH--FG 472
                      +V+EY   G L  V+         LD    L +M  +T AL+  H    
Sbjct: 73  RIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSD 132

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
               ++H DLKP N  LD      L DFG+A++L   D S  +T     +G   YM+P
Sbjct: 133 GGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN-HDTSFAKT----FVGTPYYMSP 185

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 46/176 (26%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFS-CSNEDFRA--------------------- 428
           ++G G    V+ AR L+D  + A+KV       +  F                       
Sbjct: 19  ILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVY 78

Query: 429 --------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS 474
                         +V+EY    +L  ++  +   +   + + ++ D   AL + H    
Sbjct: 79  DTGEAETPAGPLPYIVMEYVDGVTLRDIV-HTEGPMTPKRAIEVIADACQALNFSH---Q 134

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             IIH D+KP N ++       + DFGIA+ +     S+TQT    +IG   Y++P
Sbjct: 135 NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAA--VIGTAQYLSP 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 5e-20
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
              + I  +L    +  ++  T  +L  +  +    ++++ S+   + +L  + +L L G
Sbjct: 19  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKI-- 255
           NKL+  I     NL  L  L LD N++  + S L +LK +  L    N       S I  
Sbjct: 75  NKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGI-----SDING 126

Query: 256 -GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL 314
             +L  L  +    NN + DI T +  L  L  LSL  N++   I      L  L++L L
Sbjct: 127 LVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 182

Query: 315 SNNNLSEIIPLS-LEKLLYLNI 335
           S N++S++  L+ L+ L  L +
Sbjct: 183 SKNHISDLRALAGLKNLDVLEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 6e-20
 Identities = 52/271 (19%), Positives = 94/271 (34%), Gaps = 47/271 (17%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
           E       +         +          K ++ +  +   +         S++ I  ++
Sbjct: 3   ETITVSTPIKQ-------IFPDDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANN 52

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
            +I     + I  L ++  + L GNKL   I   L  L+ L +L    N+++  + + L 
Sbjct: 53  SDIK--SVQGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLSS-LK 106

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN 245
            L  L  L L  N +S  I     +L  L +L+L +N++T I  +               
Sbjct: 107 DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVL--------------- 149

Query: 246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD 305
                       L  L  +    N +  DI   + GL  LQ L L  N +  S   +   
Sbjct: 150 ----------SRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHI--SDLRALAG 195

Query: 306 LVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           L +L+ L+L +             L+  N +
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 2e-17
 Identities = 54/267 (20%), Positives = 109/267 (40%), Gaps = 27/267 (10%)

Query: 42  NLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
             +     ++    V        L+SI D++  +++ + S       +  +     + KL
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQNELNSI-DQIIANNSDIKS-------VQGIQYLPNVTKL 70

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
            ++ N L    P  + N   +L ++++ +  I       + +L  L S+ L  N ++  I
Sbjct: 71  FLNGNKLTDIKP--LTNLK-NLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DI 124

Query: 157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN 216
           +  L  L +L+ L    N++   I   L  L  L  L L  N++S  I      LT L+N
Sbjct: 125 N-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179

Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP 276
           L+L  N ++ + + L  LK++  L+ +S   +    +   NL V   +  +  +L    P
Sbjct: 180 LYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTP 236

Query: 277 TTIQGLKSLQFLSLGHNRLQGSIPNSF 303
             I      +  ++  +  + +   SF
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 7e-11
 Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 36/225 (16%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTP--- 79
            +  +   V+     L+++     +N+ +     +  L ++  +L L+ N LT   P   
Sbjct: 29  KKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVT-KLFLNGNKLTDIKPLTN 85

Query: 80  -----ELSF-------LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSD 125
                 L         LSS+ + K LK L +  N +       +        LE +++ +
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGN 140

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC 185
             I+      +  LT L ++ L  N+++  I   L  L KLQ L    N +   +   L 
Sbjct: 141 NKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LA 194

Query: 186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI 230
            L  L  L+L   +          NL     +      L +   I
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 92.6 bits (230), Expect = 6e-20
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 60/178 (33%)

Query: 392 LIGRGSFGSVYKA---RLQDGMEFAIKVFHFSCSNEDFRA-------------------- 428
            I  G  G +Y A    + +G    +K    S  + + +A                    
Sbjct: 87  CIAHGGLGWIYLALDRNV-NGRPVVLKGLVHS-GDAEAQAMAMAERQFLAEVVHPSIVQI 144

Query: 429 ----------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG 472
                           +V+EY    SL++        L + + +  ++++  AL YLH  
Sbjct: 145 FNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK---LPVAEAIAYLLEILPALSYLH-- 199

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            S  +++ DLKP N +L +  +  L D G           +       + G   + AP
Sbjct: 200 -SIGLVYNDLKPENIMLTEEQLK-LIDLGAVS-------RINSFG--YLYGTPGFQAP 246

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 90.3 bits (224), Expect = 6e-20
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 5/202 (2%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDL-RG 197
            + I +     KL             L+ +    N++   I  +V  +L  L ++ + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSK-I 255
           N L    P  F NL  L+ L + +  +  +P     +    + LD   N+ +  +     
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 256 GNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL 314
             L   + I +   N + +I      G +  +     +N L+    + F        LD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 315 SNNNLSEIIPLSLEKLLYLNIL 336
           S   +  +    LE L  L   
Sbjct: 210 SRTRIHSLPSYGLENLKKLRAR 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 49/250 (19%), Positives = 84/250 (33%), Gaps = 35/250 (14%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNLTDLISIDL-GGN 150
             +L      L          F   LE I +S  ++   I  ++  NL  L  I +   N
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 151 KLNGSISITLGKLQKLQFLSFRGNELEGSIPN-VLCHLAVLFQLDLRGNKLSGSIPT-CF 208
            L          L  LQ+L      ++  +P+    H      LD++ N    +I    F
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 209 GNLTA-LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
             L+     L L+ N +  I +               + F         N   L  ++ S
Sbjct: 150 VGLSFESVILWLNKNGIQEIHN---------------SAF---------NGTQLDELNLS 185

Query: 268 RNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL- 325
            NN L ++P  +  G      L +   R+        ++L  L +   S  NL ++  L 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPTLE 243

Query: 326 SLEKLLYLNI 335
            L  L+  ++
Sbjct: 244 KLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
           EL      L           + S    L+K++IS+N +   +   V +    L  I +  
Sbjct: 34  ELRFVLTKLRVIQK-----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 126 CN----ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP 181
            N    I+    + + NL  L    +    +     +      +   L  + N    +I 
Sbjct: 89  ANNLLYINPEAFQNLPNLQYL---LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 182 -NVLCHLAV-LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDIL 238
            N    L+     L L  N +     + F           D+N L  +P+ +       +
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNR 294
            LD         LPS    L+ L ++       L  +PT ++ L +L   SL +  
Sbjct: 206 ILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 35/200 (17%)

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
                 +K+     I     +    L F   +L             L ++++  N +   
Sbjct: 13  VFLCQESKVT---EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 204 IPT-CFGNLTALRNLHL-DSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL 261
           I    F NL  L  + +  +N L  I                   F   LP+       L
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINP---------------EAFQN-LPN-------L 106

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP-NSFDDLVS-LESLDLSNNNL 319
             +  S   +                L +  N    +I  NSF  L      L L+ N +
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 320 SEIIP-----LSLEKLLYLN 334
            EI         L++L   +
Sbjct: 167 QEIHNSAFNGTQLDELNLSD 186

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD 274
           R      +++T IPS L   ++ + L F                  L +I+ S+N++L  
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 275 IPT-TIQGLKSLQFLSLGH-NRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLY 332
           I       L  L  + +   N L    P +F +L +L+ L +SN  +  +  +     L 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 333 LNILLI 338
             +L I
Sbjct: 130 KVLLDI 135

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 20/222 (9%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTPE 80
              KL  I          L+  ++  N VL  + + V        E+ +           
Sbjct: 38  VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97

Query: 81  LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI--GN 138
            +F     N   L+ L IS   +   LP V    S     + + D      I      G 
Sbjct: 98  EAF----QNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
             + + + L  N +    +      Q  +      N LE    +V    +    LD+   
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 199 KLSGSIPTC-FGNLTALRNLHLDSNELTSIPSI--LWNLKDI 237
           ++  S+P+    NL  LR        L  +P++  L  L + 
Sbjct: 213 RIH-SLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 28  SQNKLVGIVSITIF-NLSTLKVFDVDNNYVLGRLSSIV-------DELSLSDNYLTSSTP 79
           SQN ++ ++   +F NL  L    ++    L  ++            L +S+  +    P
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-P 120

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVV-GNFSQSLEFIWMSDCNISGGISEEIGN 138
           ++  + S+        LDI  N     + R      S     +W++   I   I     N
Sbjct: 121 DVHKIHSLQ----KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN 175

Query: 139 LTDLISIDL-GGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
            T L  ++L   N L    +           L      +       L +L  L       
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSN 222
            K    +PT    L AL    L   
Sbjct: 236 LK---KLPT-LEKLVALMEASLTYP 256

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 44/172 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
            IG GSFG     +  +DG ++ IK  + S  +   R                       
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE 90

Query: 429 ---------LVLEYTTNGSLEKVL-YSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                    +V++Y   G L K +      +    Q L+  + +  AL+++H      I+
Sbjct: 91  SFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKIL 147

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           H D+K  N  L  +    L DFGIA++L      + +      IG   Y++P
Sbjct: 148 HRDIKSQNIFLTKDGTVQLGDFGIARVLN-STVELARA----CIGTPYYLSP 194

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 39/170 (22%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
             IG G    V++   +    +AIK  +   ++                           
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +V+E   N  L   L      +D  +R +   ++  A+  +H      I
Sbjct: 94  YDYEITDQYIYMVMECG-NIDLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGI 148

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +H DLKP N L+ D ++  L DFGIA  +  +  S+ +   +  + YM P
Sbjct: 149 VHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 197

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 49/180 (27%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKV-------------------------FHFSCSNE 424
            LIG G FG V+KA+   DG  + IK                          ++      
Sbjct: 17  ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGF 76

Query: 425 DFRA----------------LVLEYTTNGSLEKVL-YSSNYILDILQRLNIMIDVTSALE 467
           D+                  + +E+   G+LE+ +       LD +  L +   +T  ++
Sbjct: 77  DYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVD 136

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           Y+H   S  +I+ DLKP N  L D     + DFG+   L  + +      TL    YM+P
Sbjct: 137 YIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLR---YMSP 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.0 bits (211), Expect = 3e-19
 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 11/186 (5%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
                ++  LG +      +IT  ++  L +++     +   +   + +   +  L +  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIG 256
              +   P     L+ L  L +   ++TS     L  L  +  LD   +     + +KI 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
            L  +  ID S N  + DI   ++ L  L+ L++  + +        +D   L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 317 NNLSEI 322
             +   
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNEL 176
           SL +I +++ N++      I    ++  + +       + +  +  L  L+ L   G ++
Sbjct: 45  SLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDV 100

Query: 177 EGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKD 236
                  L  L  L  LD+  +    SI T    L  + ++ L  N   +    L  L +
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 237 ILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL 271
           +  L+   +         I +   L ++      +
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 9e-13
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 41/198 (20%)

Query: 35  IVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSN 89
             +IT   +++L    + N  V     +    +I  +L++++ + T+     + +S +SN
Sbjct: 35  TANITEAQMNSLTYITLANINVTDLTGIEYAHNIK-DLTINNIHATN----YNPISGLSN 89

Query: 90  CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGG 149
              L++L I                            +++      +  LT L  +D+  
Sbjct: 90  ---LERLRIMGK-------------------------DVTSDKIPNLSGLTSLTLLDISH 121

Query: 150 NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFG 209
           +  + SI   +  L K+  +    N     I   L  L  L  L+++ + +         
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 210 NLTALRNLHLDSNELTSI 227
           +   L  L+  S  +   
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 210 NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRN 269
              A  N  L  +   +I      +  + Y+   +          I     +  +  + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN-N 75

Query: 270 NLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK 329
               +    I GL +L+ L +    +      +   L SL  LD+S++   + I   +  
Sbjct: 76  IHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 330 LLYLNIL 336
           L  +N +
Sbjct: 135 LPKVNSI 141

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 4e-19
 Identities = 55/293 (18%), Positives = 106/293 (36%), Gaps = 17/293 (5%)

Query: 37  SITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
            + + N+             L  L+     L+++  ++ ++      L      + ++ L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 97  DISRNPLDGFLPRVVGNFS----QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
           +I    +   + R    +S    +SL    + +               ++    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLT 212
                +         FL+F  N    S+      L  L  L L+ N L  +         
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 213 ALRNLHLDSNELTSIPSILWN-----LKDILYLDFWSN-LFVGPLPSKIGNLKVLTRIDF 266
            + +L      L S+ S  ++      + IL L+  SN L           +KVL   D 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DL 457

Query: 267 SRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNNN 318
             N ++  IP  +  L++LQ L++  N+L+ S+P+  FD L SL+ + L +N 
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 9/201 (4%)

Query: 141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL 200
           ++ ++ +         + +   L+ L     +      S   +    A +    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 201 SGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLF--VGPLPSKIGN 257
                 C  + ++   L+   N  T         LK +  L    N       +     N
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 258 LKVLTRIDFSRNNLL-GDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV-SLESLDLS 315
           +  L  +D S N+L       T    +S+  L+L  N L GS+   F  L   ++ LDL 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLH 458

Query: 316 NNNLSEIIPLSLEKLLYLNIL 336
           NN +   IP  +  L  L  L
Sbjct: 459 NNRIMS-IPKDVTHLQALQEL 478

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPL 251
           L L  N +S         L+ LR L L  N + S+   +    +D+ YLD   N     +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-I 115

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTT--IQGLKSLQFLSLGHNRLQGSIPNSFDDL-VS 308
                 +  L  +D S  N    +P       L  L FL L   + +         L +S
Sbjct: 116 SC--CPMASLRHLDLS-FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 309 LESLDLSNNNLSEIIPLSLEKLLYLNILL 337
              LDL + ++      SL+      + L
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHL 201

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 47/290 (16%), Positives = 80/290 (27%), Gaps = 30/290 (10%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGF-LPRVVGNFSQSLEFIWMS 124
            L +S N L +    +S          L+ LD+S N  D   + +  GN +  L F+ +S
Sbjct: 104 YLDVSHNRLQN----ISC----CPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLS 154

Query: 125 DCNISGGISEEIGNL-TDLISIDLGGNKLNGSISITLGKLQ-KLQFLSFRGNELEGSIPN 182
                      + +L    I +DL    + G  + +L      +  L F  N L     N
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 183 VLCHLAVLFQLDLRGNKLSGSIPTCFGNLT------------ALRNLHLDSNELTSIPSI 230
           +   +  L  L L   KL+                        L+++         +   
Sbjct: 215 MS--VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 231 LWNLK----DILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQ 286
            W       +I  L     +           LK L          L            + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 287 FLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
              L  +              S   L+ + N  ++ +      L  L  L
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS-FDDLVSLESLDLSNNNL 319
              +  S+N++       I  L  L+ L L HNR++ S+    F     LE LD+S+N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 320 SEIIPLSLEKLLYLNI 335
             I    +  L +L++
Sbjct: 113 QNISCCPMASLRHLDL 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 51/334 (15%), Positives = 87/334 (26%), Gaps = 42/334 (12%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP 252
           +D     L+  +P         + L L  N ++ +                         
Sbjct: 36  VDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELR-----------------------M 69

Query: 253 SKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
             I  L  L  +  S N  +  +   +    + L++L + HNRLQ +I      + SL  
Sbjct: 70  PDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRH 125

Query: 312 LDLSNNNLSEIIPLSL-EKLLYLNIL-LIVVVILALKFGLISRCQKRATKLPNVSNMQPQ 369
           LDLS N+   +        L  L  L L       L    ++        L  VS     
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 370 ASRRRFSYQELLRATDGFSANNLIGRGSFGSV-YKARLQDGMEFAIKVFHFSCSNEDFRA 428
                            F  N+L       SV     LQ                     
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST---PIIHCDLKPH 485
                  N +L+ +  +    + + Q           +EYL+    T    I   +    
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWP-----RPVEYLNIYNLTITERIDREEFTYS 300

Query: 486 NKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
              L   ++ H+ +               +    
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 87.9 bits (218), Expect = 5e-19
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 46/213 (21%)

Query: 351 SRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGM 410
           ++ +++    P++       +    +    ++    +S    IG G    V++   +   
Sbjct: 23  AKFERQHMDSPDLGTDDDDKASSSANECISVKGRI-YSILKQIGSGGSSKVFQVLNEKKQ 81

Query: 411 EFAIKV---------------------------------FHFSCSNEDFRALVLEYTTNG 437
            +AIK                                   +     + +  +V+E   N 
Sbjct: 82  IYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG-NI 140

Query: 438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL 497
            L   L      +D  +R +   ++  A+  +H      I+H DLKP N L+ D ++  L
Sbjct: 141 DLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVDGML-KL 195

Query: 498 SDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            DFGIA  +  +  S+ +      +G   YM P
Sbjct: 196 IDFGIANQMQPDTTSVVKDS---QVGAVNYMPP 225

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 39/170 (22%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
             IG G    V++   +    +AIK  +   ++                           
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      +V+E   N  L   L      +D  +R +   ++  A+  +H      I
Sbjct: 75  YDYEITDQYIYMVMECG-NIDLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGI 129

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +H DLKP N L+ D ++  L DFGIA  +  +  S+ +   +  + YM P
Sbjct: 130 VHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 178

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 7/175 (4%)

Query: 166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDSNEL 224
            + L  + N+L          L  L  L L  NKL  ++P   F  L  L  L +  N+L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 225 TSIPS-ILWNLKDILYLDFWSNLFVGPLPSKI-GNLKVLTRIDFSRNNLLGDIPTTI-QG 281
            ++P  +   L ++  L    N     LP ++  +L  LT +    N L   +P  +   
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 282 LKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           L SL+ L L +N+L+     +FD L  L++L L NN L  +   + + L  L +L
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 33/196 (16%)

Query: 138 NLTDLISIDLGGNKLNGSISITL-GKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDL 195
            LT L  + L  NKL  ++   +  +L+ L+ L    N+L+ ++P  V   L  L +L L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 196 RGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK 254
             N+L  S+P   F +LT L  L L  NEL S+P                 +F       
Sbjct: 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPK---------------GVFDK----- 155

Query: 255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL 314
              L  L  +    N L          L  L+ L L +N+L+     +FD L  L+ L L
Sbjct: 156 ---LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 315 SNNNL----SEIIPLS 326
             N      + II ++
Sbjct: 213 QENPWDCTCNGIIYMA 228

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           K  G + +C  N     ++   S +LT+IPS I  + K    LD  SN            
Sbjct: 6   KKDGGVCSCNNNKN---SVDCSSKKLTAIPSNIPADTK---KLDLQSNKLSSLPSKAFHR 59

Query: 258 LKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIP-NSFDDLVSLESLDLS 315
           L  L  +  + N  L  +P  I + LK+L+ L +  N+LQ ++P   FD LV+L  L L 
Sbjct: 60  LTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 316 NNNLSEI---IPLSLEKLLYLN 334
            N L  +   +  SL KL YL+
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLS 139

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 24/184 (13%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
            L L+DN L +  P   F   + N   L+ L ++ N L   LP  V +   +L  + +  
Sbjct: 65  LLYLNDNKLQT-LPAGIF-KELKN---LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118

Query: 126 CNISGGISEEI-GNLTDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEGSIP 181
             +   +   +  +LT L  + LG N+L    S+  G   KL  L+ L    N+L+    
Sbjct: 119 NQLKS-LPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWN--LKDILY 239
                L  L  L L  N+L       F +L  L+ L L  N     P   W+     I+Y
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN-----P---WDCTCNGIIY 226

Query: 240 LDFW 243
           +  W
Sbjct: 227 MAKW 230

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.3 bits (211), Expect = 2e-18
 Identities = 46/271 (16%), Positives = 80/271 (29%), Gaps = 37/271 (13%)

Query: 79  PELSFLSSMSNCKYLKKLDISRNPL-DGFLPRVVGNFSQS-LEFIWMSDCNISGGISEEI 136
            +L   + +     LK+L +    +    L   +     S L+ + + +  ++G     +
Sbjct: 56  ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115

Query: 137 GNLT--DLISIDLGGNKLNGSIS----ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVL 190
              T  DL  ++L         +    +       L+ LS             +     L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 191 FQLDLRGNKLSGSIP----TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNL 246
             LDL  N   G        C      L+ L L +  + +   +   L            
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------------ 223

Query: 247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPNSFDD 305
                         L  +D S N+L              L  L+L    L+  +P     
Sbjct: 224 --------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 306 LVSLESLDLSNNNLSEI-IPLSLEKLLYLNI 335
              L  LDLS N L     P  L ++  L++
Sbjct: 273 PAKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 4e-18
 Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 36/241 (14%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSD 125
           EL+L +  +T + P     ++  +   L   ++S    D +L  +       L+ + ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 126 CNISGGISEEIGNLTDLISIDLGGNKLNGSI----SITLGKLQKLQFLSFRGNELE---G 178
            +      E++     L ++DL  N   G      ++   K   LQ L+ R   +E   G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDSNELTSIPSILWNLKDI 237
               +      L  LDL  N L  +         + L +L+L    L  +P         
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-------- 270

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
                        LP+K      L+ +D S N  L   P +   L  +  LSL  N    
Sbjct: 271 ------------GLPAK------LSVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNPFLD 310

Query: 298 S 298
           S
Sbjct: 311 S 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 122 WMSDCNISGGISEEI--GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNEL-EG 178
           W S  N  G    E+  G  +    +     + +      + K   L+ L+ R   +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 179 SIPNVLCHLAV--LFQLDLRGNKLSGSIPTCFGNLT--ALRNLHLDSNELTSIPSIL--- 231
            +   L  L +  L +L L   +++G+ P      T   L  L+L +    +  + L   
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 232 --WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ----GLKSL 285
             W    +  L       +     ++     L+ +D S N  LG+             +L
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 286 QFLSLGHNRLQ---GSIPNSFDDLVSLESLDLSNNNLSEIIPLS----LEKLLYLNI 335
           Q L+L +  ++   G         V L+ LDLS+N+L +           +L  LN+
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSI----------VDELSLSDNYLTSS 77
           +Q   +      +     L   D+ +N  LG    I          +  L+L +  + + 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 78  TPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG 137
           +   S L   +    L+ LD+S N L         ++   L  + +S   +   + + + 
Sbjct: 217 SGVCSAL--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
               L  +DL  N+L+ + S    +L ++  LS +GN    S
Sbjct: 273 -PAKLSVLDLSYNRLDRNPSP--DELPQVGNLSLKGNPFLDS 311

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 64/182 (35%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSC 421
           ++G+G++G VY  R L + +  AIK                              +  S 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88

Query: 422 SNEDFRALVLEYTTNGSLEKVLYS------------SNYILDILQRLNIMIDVTSALEYL 469
           S   F  + +E    GSL  +L S              Y   IL+           L+YL
Sbjct: 89  SENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILE----------GLKYL 138

Query: 470 HFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YM 525
           H      I+H D+K  N L++  + V  +SDFG +K L G         T    G   YM
Sbjct: 139 H---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG-----INPCTETFTGTLQYM 190

Query: 526 AP 527
           AP
Sbjct: 191 AP 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 7/205 (3%)

Query: 139 LTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRG 197
                ++ L    L    S     L  +  +    +     +  +   +L+ +  +++R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 198 NKLSGSIPT-CFGNLTALRNLHLDSNELTSIP--SILWNLKDILYLDFWSNLFVGPLPSK 254
            +    I       L  L+ L + +  L   P  + +++      L+   N ++  +P  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 255 I-GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP-NSFDDLVS-LES 311
               L   T      NN    +         L  + L  N+    I  ++F  + S    
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 312 LDLSNNNLSEIIPLSLEKLLYLNIL 336
           LD+S  +++ +    LE L  L   
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 206 TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID 265
            C        +  +   ++  IPS+  + +    L                NL  ++RI 
Sbjct: 9   ECHQE----EDFRVTCKDIQRIPSLPPSTQ---TLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 266 FSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIP-NSFDDLVSLESLDLSNNNLSEII 323
            S +  L  + +     L  +  + + + R    I  ++  +L  L+ L + N  L    
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 324 PLSLEKLLYLNILL 337
            L+      +  +L
Sbjct: 122 DLTKVYSTDIFFIL 135

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 52/189 (27%)

Query: 387 FSANNLIGRGSFGSVYKARLQDGMEFAIKV---------------------------FHF 419
             +  ++G GS G+V       G   A+K                            ++ 
Sbjct: 17  VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYC 76

Query: 420 SCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRL------NIMIDVTSALEYLHFGY 473
           S + + F  + LE   N +L+ ++ S N   + L+        +++  + S + +LH   
Sbjct: 77  SETTDRFLYIALEL-CNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH--- 132

Query: 474 STPIIHCDLKPHNKLLD-------------DNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           S  IIH DLKP N L+              +N+   +SDFG+ K L     S        
Sbjct: 133 SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNP 192

Query: 521 I--IGYMAP 527
               G+ AP
Sbjct: 193 SGTSGWRAP 201

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 45/182 (24%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-----------------------H-- 418
             +  ++++G+G+  +V++ R  + G  FAIKVF                       H  
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 419 -------FSCSNEDFRALVLEYTTNGSLEKVLYS--SNYILDILQRLNIMIDVTSALEYL 469
                     +    + L++E+   GSL  VL    + Y L   + L ++ DV   + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 470 HFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
                  I+H ++KP N +     D   V  L+DFG A+ L  ++Q ++   T     Y+
Sbjct: 129 R---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTE---EYL 182

Query: 526 AP 527
            P
Sbjct: 183 HP 184

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 57/201 (28%)

Query: 381 LRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV----------------------- 416
           LR    F    ++G+G+FG V KAR   D   +AIK                        
Sbjct: 2   LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH 61

Query: 417 ------FHFSCSNEDFRA------------LVLEYTTNGSLEKVLYSSNYILDILQRLNI 458
                 +       +F              + +EY  NG+L  +++S N      +   +
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRL 121

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
              +  AL Y+H   S  IIH DLKP N  +D++    + DFG+AK +      +     
Sbjct: 122 FRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQ 178

Query: 519 LAI---------IG---YMAP 527
                       IG   Y+A 
Sbjct: 179 NLPGSSDNLTSAIGTAMYVAT 199

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 37/180 (20%), Positives = 52/180 (28%), Gaps = 47/180 (26%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------------HF 419
            +G G F  V     L DG  +A+K                                 + 
Sbjct: 36  KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95

Query: 420 SCSNEDFRA--LVLEYTTNGSLEKVLY---SSNYILDILQRLNIMIDVTSALEYLHFGYS 474
                      L+L +   G+L   +         L   Q L +++ +   LE +H   +
Sbjct: 96  LRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---A 152

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG-------YMAP 527
               H DLKP N LL D     L D G         +   Q  TL           Y AP
Sbjct: 153 KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAP 212

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 58/191 (30%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL--------------------- 429
            +GRG FG V++A+   D   +AIK             +                     
Sbjct: 12  CLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNA 71

Query: 430 ---------------------VLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTSAL 466
                                 ++     +L+  +    +    +    L+I + +  A+
Sbjct: 72  WLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAV 131

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG--- 523
           E+LH   S  ++H DLKP N     + V  + DFG+   +  +++  T    +       
Sbjct: 132 EFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHT 188

Query: 524 -------YMAP 527
                  YM+P
Sbjct: 189 GQVGTKLYMSP 199

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 5e-17
 Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 16/253 (6%)

Query: 84  LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI 143
           + S        K ++ +  +   +         S++ I  ++ +I     + I  L ++ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK--SVQGIQYLPNVT 71

Query: 144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS 203
            + L GNKL   I   L  L+ L +L    N+++  + + L  L  L  L L  N +S  
Sbjct: 72  KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-D 126

Query: 204 IPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTR 263
           I     +L  L +L+L +N++T I ++L  L  +  L    N         +  L  L  
Sbjct: 127 ING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN 182

Query: 264 IDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII 323
           +  S  N + D+   + GLK+L  L L          N   +LV   ++  ++ +L    
Sbjct: 183 LYLS-KNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 324 PLSLEKLLYLNIL 336
            +S +       +
Sbjct: 241 IISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 51/305 (16%), Positives = 101/305 (33%), Gaps = 57/305 (18%)

Query: 25  TIDSQNKLVGIVSITIFNLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTP 79
           TI     +  I S      +     ++    V        L+SI D++  +++ + S   
Sbjct: 7   TITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVTQNELNSI-DQIIANNSDIKS--- 60

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ--SLEFIWMSDCNISGGISEEIG 137
               +  +     + KL ++ N L       +   +   +L ++++ +  +       + 
Sbjct: 61  ----VQGIQYLPNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKVK--DLSSLK 109

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
           +L  L S+ L  N ++  I+  L  L +L+ L    N++   I   L  L  L  L L  
Sbjct: 110 DLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLED 165

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           N++S  I      LT L+NL+L  N ++ + ++                           
Sbjct: 166 NQIS-DIV-PLAGLTKLQNLYLSKNHISDLRAL-------------------------AG 198

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
           LK L  ++      L         L     +      L    P    D    E  ++  +
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

Query: 318 NLSEI 322
                
Sbjct: 257 LPEFT 261

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 81.0 bits (200), Expect = 8e-17
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 46/170 (27%)

Query: 393 IGRGSFGSVYKARL-QDGMEFAIKVFHFSCSNEDFRAL---------------------- 429
           +G G+ G V+K      G+  A K+ H          +                      
Sbjct: 41  LGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 100

Query: 430 --------VLEYTTNGSLEKVLYSSNYIL-DILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
                    +E+   GSL++VL  +  I   IL +  + I V   L YL   +   I+H 
Sbjct: 101 YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGK--VSIAVIKGLTYLREKHK--IMHR 156

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           D+KP N L++      L DFG++  L     SM  +     +G   YM+P
Sbjct: 157 DVKPSNILVNSRGEIKLCDFGVSGQLI---DSMANS----FVGTRSYMSP 199

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 81.4 bits (201), Expect = 9e-17
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 45/182 (24%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF-----------------------H-- 418
             +  ++++G+G+  +V++ R  + G  FAIKVF                       H  
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 419 -------FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQR--LNIMIDVTSALEYL 469
                     +    + L++E+   GSL  VL   +    + +   L ++ DV   + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 470 HFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYM 525
                  I+H ++KP N +     D   V  L+DFG A+ L  ++Q ++   T     Y+
Sbjct: 129 R---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEE---YL 182

Query: 526 AP 527
            P
Sbjct: 183 HP 184

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 50/175 (28%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTT---------------- 435
           IGRG++GSV K      G   A+K    +   ++ + L+++                   
Sbjct: 30  IGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGA 89

Query: 436 --------------NGSLEKVLYSSNYIL------DILQRLNIMIDVTSALEYLHFGYST 475
                         + S +K       +L      +IL +  I +    AL +L      
Sbjct: 90  LFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGK--ITLATVKALNHLKENLK- 146

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            IIH D+KP N LLD +    L DFGI+  L     S+ +T+     G   YMAP
Sbjct: 147 -IIHRDIKPSNILLDRSGNIKLCDFGISGQLV---DSIAKTRD---AGCRPYMAP 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 4e-16
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 30/148 (20%)

Query: 193 LDLRGNKLSGSIP--TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGP 250
           LDL  N LS  +        LT L +L L  N L  I S  +                  
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV----------------- 85

Query: 251 LPSKIGNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLGHNRLQGSIP-NSFDDLVS 308
                  +  L  +D S N+L   +       L++L+ L L +N +   +  N+F+D+  
Sbjct: 86  ------PVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 309 LESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           L+ L LS N +S      ++    L  L
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKL 165

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 42/189 (22%), Positives = 60/189 (31%), Gaps = 35/189 (18%)

Query: 140 TDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRG 197
           +    +DL  N L+      T  +L  L  L    N L   I       +  L  LDL  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 198 NKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
           N L  ++    F +L AL  L L +N +  +                 N F         
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDR---------------NAFED------- 134

Query: 257 NLKVLTRIDFSRNNLLGDIP----TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSL--E 310
            +  L ++  S  N +   P         L  L  L L  N+L+         L +    
Sbjct: 135 -MAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 311 SLDLSNNNL 319
            L L NN L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 36/174 (20%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           L S    L LS N L+    E +  + ++N   L  L +S N L+ F+      F     
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTP-TRLTN---LHSLLLSHNHLN-FISS--EAFV---- 85

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
                              + +L  +DL  N L+         LQ L+ L    N +   
Sbjct: 86  ------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 180 IP-NVLCHLAVLFQLDLRGNKLSGSIP----TCFGNLTALRNLHLDSNELTSIP 228
           +  N    +A L +L L  N++S   P         L  L  L L SN+L  +P
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 27/146 (18%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP 252
           + L  N +    P  F     LR + L +N+++ +                 + F G   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP---------------DAFQG--- 78

Query: 253 SKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLVSLE 310
                L+ L  +    N +  ++P ++ +GL SLQ L L  N++   +   +F DL +L 
Sbjct: 79  -----LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN 131

Query: 311 SLDLSNNNLSEIIPLSLEKLLYLNIL 336
            L L +N L  I   +   L  +  +
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
           T I   +N +    P      K L+ + L +N++    P++F  L SL SL L  N ++E
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 322 IIPLSLEKLLYLNIL 336
           +     E L  L +L
Sbjct: 95  LPKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 40/172 (23%), Positives = 58/172 (33%), Gaps = 39/172 (22%)

Query: 59  RLSSI-------VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVV 111
            L+ I       + E+ L  N +    P  +F    S  K L+++D+S N +   L    
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIKV-IPPGAF----SPYKKLRRIDLSNNQIS-ELA--P 73

Query: 112 GNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF 171
             F                        L  L S+ L GNK+          L  LQ L  
Sbjct: 74  DAFQG----------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 172 RGNELEGSIPN-VLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN 222
             N++   +       L  L  L L  NKL       F  L A++ +HL  N
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 77.4 bits (191), Expect = 7e-16
 Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 49/178 (27%)

Query: 390 NNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA-------------------- 428
           +  IGRGSF +VYK    +  +E A          +  R                     
Sbjct: 31  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 90

Query: 429 ---------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                          LV E  T+G+L+  L     ++ I    +    +   L++LH   
Sbjct: 91  YDSWESTVKGKKCIVLVTELMTSGTLKTYL-KRFKVMKIKVLRSWCRQILKGLQFLH-TR 148

Query: 474 STPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           + PIIH DLK  N  +        + D G+A L          +   A+IG   +MAP
Sbjct: 149 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL-------KRASFAKAVIGTPEFMAP 199

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 77.3 bits (190), Expect = 1e-15
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 53/194 (27%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR------LQDGMEFAIKV--------------------- 416
           +     ++L+G G+F  VY+A        ++  +F +KV                     
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 417 --------FHFSCSNEDFRALVLEYTTNGSL----EKVLYSSNYILDILQRLNIMIDVTS 464
                   F+ +   ++   LV E  + G+L         +   ++     ++  + +  
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY 183

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH-----------LSDFGIAKLLTGEDQSM 513
            +E +H      IIH D+KP N +L +  +             L D G +  +    +  
Sbjct: 184 MIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGT 240

Query: 514 TQTQTLAIIGYMAP 527
             T      G+   
Sbjct: 241 IFTAKCETSGFQCV 254

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 70/194 (36%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
            IG G FGSV+K     DG  +AIK      +                            
Sbjct: 18  KIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYF 77

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDIL---QRLNIMIDVTSALEYLHFGYST 475
                     +  EY   GSL   +  +  I+      +  ++++ V   L Y+H   S 
Sbjct: 78  SAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SM 134

Query: 476 PIIHCDLKPHNKLLDDN-------------------IVAHLSDFGIAKLLTGEDQSMTQT 516
            ++H D+KP N  +                      ++  + D G    +     S  Q 
Sbjct: 135 SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRI-----SSPQV 189

Query: 517 QTLAIIG---YMAP 527
           +     G   ++A 
Sbjct: 190 E----EGDSRFLAN 199

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 51/175 (29%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTN--------------- 436
           +GRG++G V K R +  G   A+K    + ++++ + L+++   +               
Sbjct: 15  LGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGA 74

Query: 437 ---------------GSLEKVLYSSNYILDILQRLN------IMIDVTSALEYLHFGYST 475
                           SL+K       ++D  Q +       I + +  ALE+LH   S 
Sbjct: 75  LFREGDVWICMELMDTSLDKFY---KQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS- 130

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            +IH D+KP N L++      + DFGI+  L      + +       G   YMAP
Sbjct: 131 -VIHRDVKPSNVLINALGQVKMCDFGISGYLV---DDVAKDID---AGCKPYMAP 178

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 36/166 (21%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTN--------------- 436
           +G G+ G V+K R  + G   A+K    S + E+ + ++++                   
Sbjct: 33  MGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGT 92

Query: 437 ---------------GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                             EK+       +       + + +  AL YL   +   +IH D
Sbjct: 93  FITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG--VIHRD 150

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +KP N LLD+     L DFGI+  L        + ++     YMAP
Sbjct: 151 VKPSNILLDERGQIKLCDFGISGRLV---DDKAKDRSAGCAAYMAP 193

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 51/186 (27%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHF-------SCSNE-----------------DF 426
           ++  G F  VY+A+ +  G E+A+K           +   E                   
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94

Query: 427 RALVLEYTTNGSLEKVL---YSSNYILDILQR------------LNIMIDVTSALEYLHF 471
            ++  E +  G  E +L        +++ L++            L I      A++++H 
Sbjct: 95  ASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH- 153

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG-------- 523
               PIIH DLK  N LL +     L DFG A  ++         Q  A++         
Sbjct: 154 RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTT 213

Query: 524 --YMAP 527
             Y  P
Sbjct: 214 PMYRTP 219

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 76/216 (35%)

Query: 361 PNVSNMQPQASRRRFSYQ--ELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVF 417
            ++ + QP    R+   +  +  +         ++G GSF +V  AR      E+AIK+ 
Sbjct: 13  GSLQHAQPPPQPRKKRPEDFKFGK---------ILGEGSFSTVVLARELATSREYAIKIL 63

Query: 418 --------------------------------HFSCSNEDFRALVLEYTTNGSLEKVLYS 445
                                           +F+  +++     L Y  NG L      
Sbjct: 64  EKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL------ 117

Query: 446 SNYILDILQRLNIMID---------VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH 496
               L  ++++    +         + SALEYLH      IIH DLKP N LL+++   H
Sbjct: 118 ----LKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNED--MH 168

Query: 497 --LSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             ++DFG AK+L+ E +      +   +G   Y++P
Sbjct: 169 IQITDFGTAKVLSPESKQAR-ANSF--VGTAQYVSP 201

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 76.5 bits (188), Expect = 6e-15
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 32/165 (19%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFH-FSCSNEDFRA--------------------- 428
             +G+G FG V+          AIK     + S E F                       
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 332

Query: 429 -----LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                +V EY + GSL   L       L + Q +++   + S + Y+        +H DL
Sbjct: 333 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDL 389

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +  N L+ +N+V  ++DFG+A+L+   + +  Q      I + AP
Sbjct: 390 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP-IKWTAP 433

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 75.6 bits (186), Expect = 8e-15
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 32/165 (19%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFH-FSCSNEDFRA--------------------- 428
             +G+G FG V+          AIK     + S E F                       
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249

Query: 429 -----LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                +V EY + GSL   L       L + Q +++   + S + Y+        +H DL
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDL 306

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +  N L+ +N+V  ++DFG+A+L+   + +  Q      I + AP
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP-IKWTAP 350

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 44/194 (22%)

Query: 370 ASRRRFSYQELLRATD---GFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------- 416
           + R+   Y+ + R  D    +     +G G+FG VYKA+  + G   A KV         
Sbjct: 1   SMRKSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL 60

Query: 417 --------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRL 456
                                  +  ++    +++E+   G+++ ++   +  L   Q  
Sbjct: 61  EDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQ 120

Query: 457 NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT 516
            +   +  AL +LH   S  IIH DLK  N L+       L+DFG++       +++ + 
Sbjct: 121 VVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL---KTLQKR 174

Query: 517 QTLAIIG---YMAP 527
            +   IG   +MAP
Sbjct: 175 DSF--IGTPYWMAP 186

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 75.1 bits (184), Expect = 2e-14
 Identities = 45/177 (25%), Positives = 62/177 (35%), Gaps = 48/177 (27%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVF-----------------------H---------- 418
           +G G FG V +      G + AIK                         H          
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP 81

Query: 419 ---FSCSNEDFRALVLEYTTNGSLEKVL--YSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                 +  D   L +EY   G L K L  + +   L       ++ D++SAL YLH   
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH--- 138

Query: 474 STPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              IIH DLKP N +L      ++  + D G AK L   +       TL    Y+AP
Sbjct: 139 ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTL---QYLAP 192

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 34/166 (20%)

Query: 393 IGRGSFGSVYKARLQ-DGMEFAIKVFHFSCSNEDFRA----------------------- 428
           IGRG+FG V+  RL+ D    A+K    +   +                           
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 429 -------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                  +V+E    G     L +    L +   L ++ D  + +EYL    S   IH D
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRD 238

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L+ +  V  +SDFG+++       + +       + + AP
Sbjct: 239 LAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAP 284

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 49/174 (28%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVF-------------------------------- 417
             +G+G FG+VY AR  Q     A+KV                                 
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 74

Query: 418 --HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
             +F  +   +  L+LEY   G++ + L   +   +       + ++ +AL Y H   S 
Sbjct: 75  YGYFHDATRVY--LILEYAPLGTVYRELQKLSKFDEQRTA-TYITELANALSYCH---SK 128

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ--TLAIIGYMAP 527
            +IH D+KP N LL       ++DFG +        S       TL    Y+ P
Sbjct: 129 RVIHRDIKPENLLLGSAGELKIADFGWSVHA---PSSRRTDLCGTLD---YLPP 176

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 54/202 (26%), Positives = 78/202 (38%), Gaps = 44/202 (21%)

Query: 362 NVSNMQPQASRRRF--SYQELLRATDG---FSANNLIGRGSFGSVYKAR-LQDGMEFAIK 415
           ++  +Q +   RR      E          F     +G GS+GSVYKA   + G   AIK
Sbjct: 1   SLETVQLRNPPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIK 60

Query: 416 V---------------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNY 448
                                       ++ S        +V+EY   GS+  ++   N 
Sbjct: 61  QVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNK 120

Query: 449 ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG 508
            L   +   I+      LEYLH       IH D+K  N LL+    A L+DFG+A  LT 
Sbjct: 121 TLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLT- 176

Query: 509 EDQSMTQTQTLAIIG---YMAP 527
              +M +  T  +IG   +MAP
Sbjct: 177 --DTMAKRNT--VIGTPFWMAP 194

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 42/171 (24%)

Query: 393 IGRGSFGSVYKARLQDGMEF---AIKVFHFSCSNEDFRA--------------------- 428
           +G G+FGSV +   +   +    AIKV        D                        
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 429 --------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTPI 477
                   LV+E    G L K L      + +     ++  V+  ++YL   +F      
Sbjct: 78  VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF------ 131

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H DL   N LL +   A +SDFG++K L  +D   T        + + AP
Sbjct: 132 VHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAP 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 37/203 (18%)

Query: 134 EEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQL 193
                L + +  +LG   +   +  +  +L  +Q  +   + ++ S+   +     L +L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS 253
            L  N++S  + +   +LT L  L ++ N L ++  I                       
Sbjct: 69  HLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGI----------------------- 103

Query: 254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLD 313
                  L+R+    N L  D   ++  LK+L+ LS+ +N+L+ SI      L  LE LD
Sbjct: 104 ---PSACLSRLFLDNNELR-DT-DSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLD 156

Query: 314 LSNNNLSEIIPLS-LEKLLYLNI 335
           L  N ++    L+ L+K+ ++++
Sbjct: 157 LHGNEITNTGGLTRLKKVNWIDL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 39/247 (15%)

Query: 80  ELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNL 139
            ++ +          K ++ +  +   +       S  ++     + NI       +   
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSG-VQNFNGDNSNIQ--SLAGMQFF 62

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           T+L  + L  N+++  +S  L  L KL+ LS   N L+ ++  +    A L +L L  N+
Sbjct: 63  TNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNE 117

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           L         +L  L  L + +N+L SI  +                         G L 
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLKSIVML-------------------------GFLS 150

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L  +D    N + +    +  LK + ++ L   +          +L    ++   +   
Sbjct: 151 KLEVLDLH-GNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 320 SEIIPLS 326
                +S
Sbjct: 209 ISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 219 LDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTT 278
                +  +      L + +  +                L  +   +   N+ +  +   
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGD-NSNIQSL-AG 58

Query: 279 IQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
           +Q   +L+ L L HN++   +     DL  LE L ++ N L  +  +    L  L +
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 41/189 (21%), Positives = 62/189 (32%), Gaps = 72/189 (38%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------------F 417
           IG+G F  V +    + G +FA+K+                                   
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVEL 91

Query: 418 HFSCSNEDFRALVLEYTTNGSL---------EKVLYS----SNYILDILQRLNIMIDVTS 464
             + S++    +V E+     L            +YS    S+Y+  IL           
Sbjct: 92  LETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL----------E 141

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           AL Y H      IIH D+KPH  LL   +++    L  FG+A  L               
Sbjct: 142 ALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGG-----R 193

Query: 522 IG---YMAP 527
           +G   +MAP
Sbjct: 194 VGTPHFMAP 202

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 73.4 bits (180), Expect = 6e-14
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)

Query: 393 IGRGSFGSVYKARLQDG---MEFAIKVFHFSCSNEDFRA--------------------- 428
           +G G+FGSV +   +     ++ AIKV        D                        
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 429 --------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTPI 477
                   LV+E    G L K L      + +     ++  V+  ++YL   +F      
Sbjct: 404 VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF------ 457

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           +H +L   N LL +   A +SDFG++K L  +D   T        + + AP
Sbjct: 458 VHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAP 508

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 38/166 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFH-FSCSNEDFRA----------------------- 428
           IG G FG V+     +  + AIK     + S EDF                         
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 75

Query: 429 ----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTPIIHCD 481
               LV E+  +G L   L +   +      L + +DV   + YL           IH D
Sbjct: 76  APICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV------IHRD 129

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L+ +N V  +SDFG+ + +  +DQ  + T T   + + +P
Sbjct: 130 LAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASP 174

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 52/201 (25%)

Query: 360 LPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV-- 416
           +P V +     +   F   E+LRA         IG+GSFG V   +  D    +A+K   
Sbjct: 2   MPPVFDENEDVNFDHF---EILRA---------IGKGSFGKVCIVQKNDTKKMYAMKYMN 49

Query: 417 --------------------------F----HFSCSNEDFRALVLEYTTNGSLEKVLYSS 446
                                     F     +S  +E+   +V++    G L   L  +
Sbjct: 50  KQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN 109

Query: 447 NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
            +  +   +L I  ++  AL+YL    +  IIH D+KP N LLD++   H++DF IA +L
Sbjct: 110 VHFKEETVKLFIC-ELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAML 165

Query: 507 TGEDQSMTQTQTLAIIGYMAP 527
             E Q  T   T     YMAP
Sbjct: 166 PRETQITTMAGTKP---YMAP 183

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 65/182 (35%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV-------------------------------FHFS 420
           +G+G+F  V +   +  G E+A  +                                H S
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 421 CSNEDFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALEYLHF 471
            S E    L+ +  T G L      +  YS    S+ I  IL           A+ + H 
Sbjct: 79  ISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL----------EAVLHCH- 127

Query: 472 GYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YM 525
                ++H +LKP N LL          L+DFG+A  + GE Q+          G   Y+
Sbjct: 128 --QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG-----FAGTPGYL 180

Query: 526 AP 527
           +P
Sbjct: 181 SP 182

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 48/206 (23%)

Query: 362 NVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV---- 416
           ++++  P  S        L      F    L+G G++G VYK R ++ G   AIKV    
Sbjct: 1   SMASDSPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT 60

Query: 417 ------------------------------FHFSCSNEDFRA-LVLEYTTNGSLEKVL-Y 444
                                            +    D +  LV+E+   GS+  ++  
Sbjct: 61  GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKN 120

Query: 445 SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           +    L       I  ++   L +LH      +IH D+K  N LL +N    L DFG++ 
Sbjct: 121 TKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSA 177

Query: 505 LLTGEDQSMTQTQTLAIIG---YMAP 527
            L    +++ +  T   IG   +MAP
Sbjct: 178 QLD---RTVGRRNT--FIGTPYWMAP 198

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 44/169 (26%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA----------------------- 428
           IG+GSFG V+K    +     AIK+     + ++                          
Sbjct: 30  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 89

Query: 429 -------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                  +++EY   GS   +L      LD  Q   I+ ++   L+YLH   S   IH D
Sbjct: 90  LKDTKLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRD 144

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +K  N LL ++    L+DFG+A  LT    +  +  T   +G   +MAP
Sbjct: 145 IKAANVLLSEHGEVKLADFGVAGQLT---DTQIKRNTF--VGTPFWMAP 188

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 53/217 (24%)

Query: 354 QKRATKLPNVSNMQPQASRRRFSYQELLRA----------TDGFSANNLIGRGSFGSVYK 403
               +   ++            ++++   A               +   IG GS G V  
Sbjct: 4   HHHHSSGVDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCL 63

Query: 404 AR-LQDGMEFAIKV-----------------------------FHFSCSNEDFRALVLEY 433
           AR    G + A+K+                              + S    +   +++E+
Sbjct: 64  AREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEF 123

Query: 434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI 493
              G+L  ++  S   L+  Q   +   V  AL YLH   +  +IH D+K  + LL  + 
Sbjct: 124 LQGGALTDIV--SQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDG 178

Query: 494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
              LSDFG    ++   + + + ++L  +G   +MAP
Sbjct: 179 RVKLSDFGFCAQIS---KDVPKRKSL--VGTPYWMAP 210

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 57/176 (32%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV---------------------------FHFSCSNE 424
           +G GSF    K    +    FA+K+                            H    ++
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQ 78

Query: 425 DFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALEYLHFGYST 475
               LV+E    G L     +K  +S    S  +  ++          SA+ ++H     
Sbjct: 79  LHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLV----------SAVSHMH---DV 125

Query: 476 PIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQ-TLAIIGYMAP 527
            ++H DLKP N L    +DN+   + DFG A+L   ++Q +     TL    Y AP
Sbjct: 126 GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTL---HYAAP 178

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 31/150 (20%)

Query: 193 LDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
           L L  N+ +    T  F  L  LR ++  +N++T I                   F G  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---------------GAFEG-- 79

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLVSL 309
                    +  I  + +N L ++   + +GL+SL+ L L  NR+   + N SF  L S+
Sbjct: 80  ------ASGVNEILLT-SNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSV 131

Query: 310 ESLDLSNNNLSEIIPL---SLEKLLYLNIL 336
             L L +N ++ + P    +L  L  LN+L
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 28/154 (18%)

Query: 167 QFLSFRGNELEGSIPN-VLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
             L    NE        +   L  L +++   NK++      F   + +  + L SN L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT-TIQGLKS 284
           ++                  +F G        L+ L  +    +N +  +   +  GL S
Sbjct: 95  NVQ---------------HKMFKG--------LESLKTLMLR-SNRITCVGNDSFIGLSS 130

Query: 285 LQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNN 317
           ++ LSL  N++  ++   +FD L SL +L+L  N
Sbjct: 131 VRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ 280
           + +L  IP  +      L L+  +   V         L  L +I+FS N +        +
Sbjct: 20  NQKLNKIPEHIPQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 281 GLKSLQFLSLGHNRLQGSIPNS-FDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           G   +  + L  NRL+ ++ +  F  L SL++L L +N ++ +   S   L  + +L
Sbjct: 79  GASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPN-VLCHLAVLFQLDLR 196
            L  L  I+   NK+             +  +    N LE ++ + +   L  L  L LR
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 197 GNKLSGSIPT-CFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLF 247
            N+++  +    F  L+++R L L  N++T++       L  +  L+  +N F
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 40/183 (21%)

Query: 59  RLSSI-------VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVV 111
           +L+ I         EL L++N  T       F         L+K++ S N +        
Sbjct: 22  KLNKIPEHIPQYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKI-------- 69

Query: 112 GNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF 171
                 +E           G  E    + ++    L  N+L          L+ L+ L  
Sbjct: 70  ----TDIE----------EGAFEGASGVNEI---LLTSNRLENVQHKMFKGLESLKTLML 112

Query: 172 RGNELEGSIPN-VLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPS 229
           R N +   + N     L+ +  L L  N+++ ++    F  L +L  L+L +N       
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCNCY 170

Query: 230 ILW 232
           + W
Sbjct: 171 LAW 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 61/198 (30%), Positives = 82/198 (41%), Gaps = 41/198 (20%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
            D   +DL    L      T   L KL +L+   N+L+     V   L  L  L L  N+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 200 LSGSIPT-CFGNLTALRNLHLDSNELTSIPS----ILWNLKDILYLDFWSNLFVGPLPSK 254
           L+ S+P   F +LT L  L+L  N+L S+PS     L  LK  L L+             
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK-ELRLN------------- 139

Query: 255 IGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIP-NSFDDLVSLESL 312
                          N L  IP      L +LQ LSL  N+LQ S+P  +FD L  L+++
Sbjct: 140 --------------TNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184

Query: 313 DLSNNNL----SEIIPLS 326
            L  N       EI+ LS
Sbjct: 185 TLFGNQFDCSRCEILYLS 202

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 54/149 (36%)

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
           +LDL+   L+      F  LT L  L+LD N+L ++ +                +F    
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---------------GVF---- 79

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS-FDDLVSLE 310
                                         L  L  L L +N+L  S+P   FD L  L+
Sbjct: 80  ----------------------------DDLTELGTLGLANNQLA-SLPLGVFDHLTQLD 110

Query: 311 SLDLSNNNLSEIIPLSLEKL-----LYLN 334
            L L  N L  +     ++L     L LN
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLN 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 32/189 (16%)

Query: 65  DELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMS 124
           ++L L    L + +      ++      L  L++  N L   L   V +    L  + ++
Sbjct: 38  EKLDLQSTGLATLSD-----ATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 125 DCNIS---GGISEEIGNLTDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEG 178
           +  ++    G+ + +  L  L    LGGN+L    S+  G   +L KL+ L    N+L+ 
Sbjct: 92  NNQLASLPLGVFDHLTQLDKL---YLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQ- 144

Query: 179 SIPN-VLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDSNELTSIPSILWN--L 234
           SIP      L  L  L L  N+L  S+P   F  L  L+ + L  N         ++   
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN-----Q---FDCSR 195

Query: 235 KDILYLDFW 243
            +ILYL  W
Sbjct: 196 CEILYLSQW 204

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
            ++D     L      T +GL  L +L+L +N+LQ      FDDL  L +L L+NN L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 322 I---IPLSLEKLLYLN 334
           +   +   L +L  L 
Sbjct: 98  LPLGVFDHLTQLDKLY 113

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 38/166 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN-EDFRA----------------------- 428
           +G G FG V   + +   + AIK+      + ++F                         
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ 91

Query: 429 ----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTPIIHCD 481
               ++ EY  NG L   L    +     Q L +  DV  A+EYL    F      +H D
Sbjct: 92  RPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF------LHRD 145

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L++D  V  +SDFG+++ +  +D+  +   +   + +  P
Sbjct: 146 LAARNCLVNDQGVVKVSDFGLSRYVL-DDEYTSSVGSKFPVRWSPP 190

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 57/176 (32%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVF-------------HFSCSN-----------EDFR 427
           IG GS+    +       MEFA+K+                               +D +
Sbjct: 30  IGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGK 89

Query: 428 A--LVLEYTTNGSLEKVLYSSNYILD-ILQRLN--------IMIDVTSALEYLHFGYSTP 476
              +V E    G L          LD IL++          ++  +T  +EYLH   +  
Sbjct: 90  YVYVVTELMKGGEL----------LDKILRQKFFSEREASAVLFTITKTVEYLH---AQG 136

Query: 477 IIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQ-TLAIIGYMAP 527
           ++H DLKP N L      +     + DFG AK L  E+  +     T     ++AP
Sbjct: 137 VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTA---NFVAP 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
            L  +  I    + +     I    L  +++L+  GN+L   I   L  L  L  L L G
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTG 94

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPLPSKI- 255
           N+L       F  LT L+ L L  N+L S+P  +   L ++ YL+   N     LP  + 
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVF 153

Query: 256 GNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLVSLESLD 313
             L  LT +D S  N L  +P  +   L  L+ L L  N+L+ S+P+  FD L SL+ + 
Sbjct: 154 DKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 314 LSNN 317
           L +N
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 33/199 (16%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
            + I  +L    +  + ++T  +L  +  +    ++++ S+   + +L  +  L L GNK
Sbjct: 19  AETIKANLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNK 74

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           L   I      LT L  L L  N+L S+P+                +F          L 
Sbjct: 75  LH-DISA-LKELTNLTYLILTGNQLQSLPN---------------GVFDK--------LT 109

Query: 260 VLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPNS-FDDLVSLESLDLSNN 317
            L  +    N L   +P  +   L +L +L+L HN+LQ S+P   FD L +L  LDLS N
Sbjct: 110 NLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167

Query: 318 NLSEIIPLSLEKLLYLNIL 336
            L  +     +KL  L  L
Sbjct: 168 QLQSLPEGVFDKLTQLKDL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 26/127 (20%)

Query: 139 LTDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL 195
           LT+L  + L  N+L    S+  G   KL  L +L+   N+L+     V   L  L +LDL
Sbjct: 108 LTNLKELVLVENQLQ---SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164

Query: 196 RGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPS-ILWNLK-----------------D 236
             N+L  S+P   F  LT L++L L  N+L S+P  +   L                   
Sbjct: 165 SYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223

Query: 237 ILYLDFW 243
           I YL  W
Sbjct: 224 IRYLSEW 230

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 38/166 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN-EDFRA----------------------- 428
           +G G FG V   + +   + A+K+      + ++F                         
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE 75

Query: 429 ----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTPIIHCD 481
               +V EY +NG L   L S    L+  Q L +  DV   + +L    F      IH D
Sbjct: 76  YPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF------IHRD 129

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L+D ++   +SDFG+ + +  +DQ ++   T   + + AP
Sbjct: 130 LAARNCLVDRDLCVKVSDFGMTRYVL-DDQYVSSVGTKFPVKWSAP 174

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 66/215 (30%)

Query: 360 LPNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV-- 416
           + +++  Q       F      + +D +     +G+G+F  V +      G+EFA K+  
Sbjct: 4   MASMTGGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIIN 63

Query: 417 -----------------------------FHFSCSNEDFRALVLEYTTNGSL-----EKV 442
                                         H S   E F  LV +  T G L      + 
Sbjct: 64  TKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVARE 123

Query: 443 LYS----SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVA 495
            YS    S+ I  IL           ++ Y H   S  I+H +LKP N LL         
Sbjct: 124 FYSEADASHCIQQIL----------ESIAYCH---SNGIVHRNLKPENLLLASKAKGAAV 170

Query: 496 HLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            L+DFG+A  +  + ++          G   Y++P
Sbjct: 171 KLADFGLAIEV-NDSEAWHG-----FAGTPGYLSP 199

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 43/174 (24%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKV----------------------------- 416
           ++    IG+G+ G+VY A  +  G E AI+                              
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
           +  S    D   +V+EY   GSL  V+  +   +D  Q   +  +   ALE+LH   S  
Sbjct: 82  YLDSYLVGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQALEFLH---SNQ 136

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           +IH D+K  N LL  +    L+DFG    +T      ++  T+  +G   +MAP
Sbjct: 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQIT---PEQSKRSTM--VGTPYWMAP 185

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 40/215 (18%)

Query: 349 LISRCQKRATKL------PNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVY 402
           L+      A  L      P     +P       +Y +        +  + +G G +G VY
Sbjct: 178 LVHHHSTVADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVY 237

Query: 403 KARLQD-GMEFAIKVF-HFSCSNEDFRA---------------------------LVLEY 433
           +   +   +  A+K     +   E+F                             ++ E+
Sbjct: 238 EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297

Query: 434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN 492
            T G+L   L   N   +  +  L +   ++SA+EYL        IH +L   N L+ +N
Sbjct: 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGEN 354

Query: 493 IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            +  ++DFG+++L+T  D           I + AP
Sbjct: 355 HLVKVADFGLSRLMT-GDTYTAHAGAKFPIKWTAP 388

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 40/155 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVF--------------------------------- 417
           L+G+GSF  VY+A  +  G+E AIK+                                  
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELY 77

Query: 418 -HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
            +F  SN  +  LVLE   NG + + L +        +  + M  + + + YLH   S  
Sbjct: 78  NYFEDSNYVY--LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHG 132

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           I+H DL   N LL  N+   ++DFG+A  L    +
Sbjct: 133 ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE 167

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 37/153 (24%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------FH 418
            +G+G F   ++         FA K+                                FH
Sbjct: 48  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 107

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
               + DF  +VLE     SL ++      + +   R   +  +    +YLH      +I
Sbjct: 108 GFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLRQIVLGCQYLH---RNRVI 163

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           H DLK  N  L++++   + DFG+A  +  + +
Sbjct: 164 HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 196

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 50/215 (23%), Positives = 75/215 (34%), Gaps = 56/215 (26%)

Query: 357 ATKLPNVSNMQPQASRRRFSYQELLRATDGFSANN---------LIGRGSFGSVYKAR-L 406
              L     M P  +  R    +     + F  ++          IG GSFG+VY AR +
Sbjct: 17  TENLYFQGAMDPMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDV 76

Query: 407 QDGMEFAIKVFHFSC--SNEDFRALVLE----------YTTN------------------ 436
           ++    AIK   +S   SNE ++ ++ E           T                    
Sbjct: 77  RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC 136

Query: 437 -GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA 495
            GS   +L      L  ++   +       L YLH   S  +IH D+K  N LL +  + 
Sbjct: 137 LGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLV 193

Query: 496 HLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            L DFG A         M    +   +G   +MAP
Sbjct: 194 KLGDFGSA-------SIMAPANSF--VGTPYWMAP 219

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 43/172 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF-----AIKVFHFSCSNEDFRA------------------- 428
           +G G+FG+VYK       E      AIK    + S +  +                    
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYST 475
                     L+ +    G L   +      +     LN  + +   + YL         
Sbjct: 83  LGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL---- 138

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             +H DL   N L+       ++DFG+AKLL  E++          I +MA 
Sbjct: 139 --VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 37/169 (21%)

Query: 393 IGRGSFGSVYKARLQDGMEF-----AIKVFHFSCSNEDFRA------------------- 428
           +G G FG+V+K       E       IKV       + F+A                   
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 80

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                     LV +Y   GSL   +      L     LN  + +   + YL       ++
Sbjct: 81  LGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMV 137

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H +L   N LL       ++DFG+A LL  +D+ +  ++    I +MA 
Sbjct: 138 HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMAL 186

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 71/187 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------------- 416
           +GRG    V +        E+A+K+                                   
Sbjct: 25  LGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHP 84

Query: 417 ----FHFSCSNEDFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVT 463
                  +     F  LV +    G L     EKV  S       +  +L          
Sbjct: 85  NIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALL---------- 134

Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
             +  LH      I+H DLKP N LLDD++   L+DFG +  L    + + +     + G
Sbjct: 135 EVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL-DPGEKLRE-----VCG 185

Query: 524 ---YMAP 527
              Y+AP
Sbjct: 186 TPSYLAP 192

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 41/179 (22%), Positives = 59/179 (32%), Gaps = 60/179 (33%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK-----------------------------VFHFSCS 422
           +G G  G V +    +   +FA+K                             V+    +
Sbjct: 70  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYA 129

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILD-ILQRLN----------IMIDVTSALEYLHF 471
                 +V+E    G L             I  R +          IM  +  A++YLH 
Sbjct: 130 GRKCLLIVMECLDGGEL----------FSRIQDRGDQAFTEREASEIMKSIGEAIQYLH- 178

Query: 472 GYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             S  I H D+KP N L      N +  L+DFG AK  T  +   T   T     Y+AP
Sbjct: 179 --SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTP---YYVAP 232

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 37/153 (24%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------FH 418
            +G+G F   ++         FA K+                                FH
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 81

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
               + DF  +VLE     SL ++      + +   R   +  +    +YLH      +I
Sbjct: 82  GFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLRQIVLGCQYLH---RNRVI 137

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           H DLK  N  L++++   + DFG+A  +  + +
Sbjct: 138 HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 170

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 31/148 (20%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSN-EDFRA--------------------- 428
             +G G FG V+ A      + A+K       + E F A                     
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT 253

Query: 429 -----LVLEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                ++ E+   GSL   L S       + + ++    +   + ++        IH DL
Sbjct: 254 KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDL 310

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           +  N L+  ++V  ++DFG+A+++   +
Sbjct: 311 RAANILVSASLVCKIADFGLARVIEDNE 338

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 40/173 (23%), Positives = 60/173 (34%), Gaps = 49/173 (28%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV---------------------------------- 416
            +G+G FG+VY AR  Q+    A+KV                                  
Sbjct: 21  PLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMY 80

Query: 417 FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
            +F      +  L+LE+   G L K L       +       M ++  AL Y H      
Sbjct: 81  NYFHDRKRIY--LMLEFAPRGELYKELQKHGRFDEQRSA-TFMEELADALHYCH---ERK 134

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ--TLAIIGYMAP 527
           +IH D+KP N L+       ++DFG +           +T   TL    Y+ P
Sbjct: 135 VIHRDIKPENLLMGYKGELKIADFGWSVH---APSLRRRTMCGTLD---YLPP 181

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 44/184 (23%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRAL-------------- 429
           D +    +IG G+   V  A       + AIK  +          L              
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 430 ----------------VLEYTTNGSLEKVL-YSSNYILDILQRLN------IMIDVTSAL 466
                           V++  + GS+  ++ +           L+      I+ +V   L
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 134

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG--- 523
           EYLH       IH D+K  N LL ++    ++DFG++  L               +G   
Sbjct: 135 EYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC 191

Query: 524 YMAP 527
           +MAP
Sbjct: 192 WMAP 195

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 51/232 (21%), Positives = 75/232 (32%), Gaps = 74/232 (31%)

Query: 351 SRCQKRATKLPNVSNMQPQASRRRFSYQELLRATDGFSAN----NLIGRGSFGSVYKAR- 405
           +  +K     P  +      S           A   F       ++IGRG    V +   
Sbjct: 56  AEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVH 115

Query: 406 LQDGMEFAIKV--------------------------------------FHFSCSNEDFR 427
              G EFA+K+                                         S  +  F 
Sbjct: 116 RATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFM 175

Query: 428 ALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
            LV +    G L     EKV  S     + +  +L           A+ +LH   +  I+
Sbjct: 176 FLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLL----------EAVSFLH---ANNIV 222

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           H DLKP N LLDDN+   LSDFG +  L    + + +     + G   Y+AP
Sbjct: 223 HRDLKPENILLDDNMQIRLSDFGFSCHL-EPGEKLRE-----LCGTPGYLAP 268

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 44/173 (25%)

Query: 393 IGRGSFGSVYKARLQDG----MEFAIKVFHFSCSNE---DFRA----------------- 428
           IG G  G V   RL+      +  AIK      +     DF +                 
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE 116

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYST 475
                     +V EY  NGSL+  L + +    I+Q + ++  V + + YL    +    
Sbjct: 117 GVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY---- 172

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
             +H DL   N L+D N+V  +SDFG++++L  +  +   T    I I + AP
Sbjct: 173 --VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAP 223

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 44/190 (23%), Positives = 63/190 (33%), Gaps = 38/190 (20%)

Query: 349 LISRCQKRATKLPN-----VSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYK 403
           L+      A  L              A++  F                 IG+G FG V  
Sbjct: 152 LVEHYTTDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVML 211

Query: 404 ARLQDGMEFAIKVFHFSCSNEDFRA----------------------------LVLEYTT 435
              + G + A+K      + + F A                            +V EY  
Sbjct: 212 GDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 270

Query: 436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV 494
            GSL   L S    +L     L   +DV  A+EYL        +H DL   N L+ ++ V
Sbjct: 271 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNV 327

Query: 495 AHLSDFGIAK 504
           A +SDFG+ K
Sbjct: 328 AKVSDFGLTK 337

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 43/182 (23%), Positives = 64/182 (35%), Gaps = 66/182 (36%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV-------------------------------FHFS 420
           +G+G+F  V +      G+EFA K+                                H S
Sbjct: 14  LGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS 73

Query: 421 CSNEDFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALEYLHF 471
              E F  LV +  T G L      +  YS    S+ I  IL           ++ Y H 
Sbjct: 74  IQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQIL----------ESIAYCH- 122

Query: 472 GYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YM 525
             S  I+H +LKP N LL          L+DFG+A  +  + ++          G   Y+
Sbjct: 123 --SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDSEAWHG-----FAGTPGYL 174

Query: 526 AP 527
           +P
Sbjct: 175 SP 176

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 45/174 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF-----AIKVFHFSCSNE---DFRA---------------- 428
           IG G FG VYK  L+          AIK      + +   DF                  
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYS 474
                      ++ EY  NG+L+K L   +    +LQ + ++  + + ++YL   ++   
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY--- 168

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
              +H DL   N L++ N+V  +SDFG++++L  + ++   T    I I + AP
Sbjct: 169 ---VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 219

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 46/202 (22%), Positives = 66/202 (32%), Gaps = 70/202 (34%)

Query: 383 ATDGFSAN---------NLIGRGSFGSVYKAR-LQDGMEFAIKV---------------- 416
           +TD FS           +++G G+   V     L    E+A+K+                
Sbjct: 2   STDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREV 61

Query: 417 --------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILD-ILQRLN---- 457
                                ED   LV E    GS+          L  I +R +    
Sbjct: 62  EMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI----------LSHIHKRRHFNEL 111

Query: 458 ----IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLT-GE 509
               ++ DV SAL++LH   +  I H DLKP N L    +      + DF +   +    
Sbjct: 112 EASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNG 168

Query: 510 DQSMTQTQTLAII----GYMAP 527
           D S   T  L        YMAP
Sbjct: 169 DCSPISTPELLTPCGSAEYMAP 190

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 53/279 (18%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 61  SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF 120
            S V    L    L    P+ +F    +     K+  + ++  + +  R      Q    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRC 354

Query: 121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS---FRGNELE 177
                   S  +  E+ +  +L  ++        +I + +  L  L +        + L+
Sbjct: 355 E--LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 178 GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLK 235
              P    +L  L    L  N +             +R LHL   +LT +  +  L  + 
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYAD------VRVLHLAHKDLTVLCHLEQLLLVT 466

Query: 236 DILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL 295
              +LD   N     LP  +  L+ L  +  S +N L ++   +  L  LQ L L +NRL
Sbjct: 467 ---HLDLSHNRLRA-LPPALAALRCLEVLQAS-DNALENVDG-VANLPRLQELLLCNNRL 520

Query: 296 QG-SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
           Q  +          L  L+L  N+L +   +       L
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 7e-08
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 15/169 (8%)

Query: 30  NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSN 89
           + L  +  +    L  L+   +  N VL    + V  L L+   LT        L  +  
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-------LCHLEQ 461

Query: 90  CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGG 149
              +  LD+S N L   LP  +    + LE +  SD  +     + + NL  L  + L  
Sbjct: 462 LLLVTHLDLSHNRLRA-LPPALAAL-RCLEVLQASDNALE--NVDGVANLPRLQELLLCN 517

Query: 150 NKLNGSISI-TLGKLQKLQFLSFRGNEL---EGSIPNVLCHLAVLFQLD 194
           N+L  S +I  L    +L  L+ +GN L   EG    +   L  +  + 
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 42/154 (27%)

Query: 393 IGRGSFGSVYKARLQDGMEF----AIKVFHFSCSNEDFRA-------------------- 428
           IG G FG V++             AIK      S+                         
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTP 476
                    +++E  T G L   L    Y LD+   +     +++AL YL    F     
Sbjct: 83  GVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF----- 137

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
            +H D+   N L+  N    L DFG+++ +    
Sbjct: 138 -VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 44/173 (25%)

Query: 393 IGRGSFGSVYKARLQ----DGMEFAIKVFHFSCSNE---DFRA----------------- 428
           +G G FG V   RL+      +  AIK      + +   DF                   
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE 112

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYST 475
                     +V EY  NGSL+  L   +    ++Q + ++  + S ++YL    +    
Sbjct: 113 GVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGY---- 168

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
             +H DL   N L++ N+V  +SDFG+ ++L  + ++   T+   I I + +P
Sbjct: 169 --VHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSP 219

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 34/174 (19%), Positives = 51/174 (29%), Gaps = 45/174 (25%)

Query: 393 IGRGSFGSVYKARLQ----DGMEFAIKV-----FHFSCSNEDFRA--------------- 428
           +G GSFG V +          +  A+K           + +DF                 
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYS 474
                      +V E    GSL   L        +       + V   + YL    F   
Sbjct: 86  LYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRF--- 142

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
              IH DL   N LL    +  + DFG+ + L   D      +   +   + AP
Sbjct: 143 ---IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP 193

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 67/349 (19%), Positives = 122/349 (34%), Gaps = 61/349 (17%)

Query: 42  NLSTLKVFDVDNNYV-----------LGRLSSIVDELSLSDNYLTSSTPELSFLSSM-SN 89
            L TL+   + +N +           L      +++L L    L++++     L+S+   
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--CEPLASVLRA 168

Query: 90  CKYLKKLDISRNPLDG----FLPRVVGNFSQSLEFIWMSDCNIS----GGISEEIGNLTD 141
               K+L +S N ++      L + + +    LE + +  C ++      +   + +   
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228

Query: 142 LISIDLGGNKL--NGSISITLGKLQ---KLQFLSFRGNELE----GSIPNVLCHLAVLFQ 192
           L  + LG NKL   G   +  G L    +L+ L      +     G +  VL     L +
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 193 LDLRGNKLSGS-----IPTCFGNLTALRNLHLDSNELTS-----IPSILWNLKDILYLDF 242
           L L GN+L          T       L +L + S   T+       S+L   + +L L  
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 243 WSN--------LFVGPLPSKIGNLKVLTRIDFSRNNL----LGDIPTTIQGLKSLQFLSL 290
            +N             L        VL  +  +  ++       +  T+    SL+ L L
Sbjct: 349 SNNRLEDAGVRELCQGLGQ---PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 291 GHNRLQGSIPNSFDDLV-----SLESLDLSNNNLSEIIPLSLEKLLYLN 334
            +N L  +      + V      LE L L +   SE +   L+ L    
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 55/327 (16%), Positives = 112/327 (34%), Gaps = 51/327 (15%)

Query: 44  STLKVFDVDNNYV----LGRLSSIVD---ELSLSDNYLTSSTPELSFLSSM-SNCKYLKK 95
             ++  D+    +       L  ++     + L D  LT +      +SS       L +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAE 60

Query: 96  LDISRNPLDG----FLPRVVGNFSQSLEFIWMSDCNIS----GGISEEIGNLTDLISIDL 147
           L++  N L       + + +   S  ++ + + +C ++    G +S  +  L  L  + L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 148 GGNKLN--GSISITLGKLQ---KLQFLSFRGNEL--EG--SIPNVLCHLAVLFQLDLRGN 198
             N L   G   +  G L    +L+ L      L       + +VL       +L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 199 KLSGS----IPTCFGNLTA-LRNLHLDSNELT-----SIPSILWNLKDILYLDFWSNLF- 247
            ++ +    +     +    L  L L+S  +T      +  I+ +   +  L   SN   
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 248 ----VGPLPSKIGNLKVLTRIDFSRNNL----LGDIPTTIQGLKSLQFLSLGHNRLQGSI 299
                   P  +     L  +      +     GD+   ++  +SL+ LSL  N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 300 PNSFDDLV-----SLESLDLSNNNLSE 321
                + +      LESL + + + + 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTA 327

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 57/346 (16%), Positives = 112/346 (32%), Gaps = 81/346 (23%)

Query: 42  NLSTLKVFDVDNNYV-----------LGRLSSIVDELSLSDNYLTSSTPELSFLSSM-SN 89
               L   ++ +N +           L   S  + +LSL +  LT +      LSS    
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA--GCGVLSSTLRT 111

Query: 90  CKYLKKLDISRNPLDG----FLPRVVGNFSQSLEFIWMSDCNIS----GGISEEIGNLTD 141
              L++L +S N L       L   + +    LE + +  C++S      ++  +    D
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 142 LISIDLGGNKLNGSISITLGKLQK-----LQFLSFRGNELE----GSIPNVLCHLAVLFQ 192
              + +  N +N +    L +  K     L+ L      +       +  ++   A L +
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 193 LDLRGNKLSGS-----IPTCFGNLTALRNLHLDSNELTS-----IPSILWNLKDILYLDF 242
           L L  NKL         P      + LR L +    +T+     +  +L   + +  L  
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 243 WSNLFVGPLPSKIG-------------NLKVLTRIDFSRNNL----LGDIPTTIQGLKSL 285
             N        ++G                 L  +     +          + +   + L
Sbjct: 292 AGN--------ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 286 QFLSLGHNRLQGS----------IPNSFDDLVSLESLDLSNNNLSE 321
             L + +NRL+ +           P S      L  L L++ ++S+
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADCDVSD 384

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 46/177 (25%)

Query: 391 NLIGRGSFGSVYKARLQDG----MEFAIKVFHFSCSNEDFRAL----------------- 429
            +IGRG FG VY   L D     +  A+K  +      +                     
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 430 --------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFG 472
                         VL Y  +G L   + +  +   +   +   + V   +++L    F 
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF- 213

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
                +H DL   N +LD+     ++DFG+A+ +  ++      +T A   + +MA 
Sbjct: 214 -----VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMAL 265

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 31/146 (21%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSN-EDFRA----------------------- 428
           +G G FG V+        + A+K       + + F A                       
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQE 80

Query: 429 ---LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP 484
              ++ EY  NGSL   L + +   L I + L++   +   + ++        IH DL+ 
Sbjct: 81  PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRA 137

Query: 485 HNKLLDDNIVAHLSDFGIAKLLTGED 510
            N L+ D +   ++DFG+A+L+   +
Sbjct: 138 ANILVSDTLSCKIADFGLARLIEDNE 163

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 47/214 (21%), Positives = 72/214 (33%), Gaps = 66/214 (30%)

Query: 361 PNVSNMQPQASRRRFSYQELLRATDGFSAN----NLIGRGSFGSVYKAR-LQDGMEFAIK 415
              ++  P  +     Y       D  S      + +GRG+   VY+ +       +A+K
Sbjct: 25  SVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALK 84

Query: 416 VFHFSCSNEDFRA---------------------------LVLEYTTNGSL-----EKVL 443
           V   +   +  R                            LVLE  T G L     EK  
Sbjct: 85  VLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGY 144

Query: 444 YS----SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAH 496
           YS    ++ +  IL           A+ YLH      I+H DLKP N L      +    
Sbjct: 145 YSERDAADAVKQIL----------EAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLK 191

Query: 497 LSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           ++DFG++K++      M       + G   Y AP
Sbjct: 192 IADFGLSKIV-EHQVLMKT-----VCGTPGYCAP 219

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 43/172 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF-----AIKVFHFSCSNEDFRA------------------- 428
           +G G+FG+VYK       E      AIK    + S +  +                    
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYST 475
                     L+ +    G L   +      +     LN  + +   + YL         
Sbjct: 83  LGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL---- 138

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             +H DL   N L+       ++DFG+AKLL  E++          I +MA 
Sbjct: 139 --VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPL 251
           L L  N+++   P  F +L  L+ L+L SN+L ++P  +  +L  +  LD  +N  +  L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVL 103

Query: 252 PSKI-GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN-SFDDLVSL 309
           PS +   L  L  +     N L ++P  I+ L  L  L+L  N+L+ SIP+ +FD L SL
Sbjct: 104 PSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSL 161

Query: 310 ESLDLSNN 317
               L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
           DC      S   G  T+   + L  N++          L  L+ L    N+L      V 
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84

Query: 185 CHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFW 243
             L  L  LDL  N+L+  +P+  F  L  L+ L +  N+LT +P  +  L  + +L   
Sbjct: 85  DSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD 143

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRN 269
            N            L  LT      N
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 25/127 (19%)

Query: 138 NLTDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD 194
           +L +L  + LG N+L    ++ +G    L +L  L    N+L      V   L  L +L 
Sbjct: 62  SLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118

Query: 195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLK-----------------D 236
           +  NKL+  +P     LT L +L LD N+L SIP      L                  D
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177

Query: 237 ILYLDFW 243
           I+YL  W
Sbjct: 178 IMYLRNW 184

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 69/183 (37%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSC 421
           ++G G+F  V+  +    G  FA+K                                   
Sbjct: 16  VLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIY 75

Query: 422 SNEDFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALEYLHFG 472
            +     LV++  + G L     E+ +Y+    S  I  +L          SA++YLH  
Sbjct: 76  ESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVL----------SAVKYLH-- 123

Query: 473 YSTPIIHCDLKPHNKLL-----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---Y 524
               I+H DLKP N L      +  I+  ++DFG++K+   ++  M+        G   Y
Sbjct: 124 -ENGIVHRDLKPENLLYLTPEENSKIM--ITDFGLSKME--QNGIMST-----ACGTPGY 173

Query: 525 MAP 527
           +AP
Sbjct: 174 VAP 176

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 51/272 (18%), Positives = 94/272 (34%), Gaps = 82/272 (30%)

Query: 306 LVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILALKFGLISRCQKRATKLPNVSN 365
           L  LE   L     +     S+E LL +    ++ +        + R +     L     
Sbjct: 6   LRQLEQFILDGPAQTNGQCFSVETLLDI----LICLYDECNNSPLRREKNILEYLEWAKP 61

Query: 366 MQPQASRRRFSYQ--ELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV------ 416
              +  + R   +  E+L+         +IGRG+FG V   +L++    FA+K+      
Sbjct: 62  FTSKVKQMRLHREDFEILK---------VIGRGAFGEVAVVKLKNADKVFAMKILNKWEM 112

Query: 417 --------------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYIL 450
                                      H++  +++   LV++Y   G L          L
Sbjct: 113 LKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDL----------L 162

Query: 451 DILQRLNIMID----------VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LS 498
            +L +    +           +  A++ +H       +H D+KP N L+D N   H  L+
Sbjct: 163 TLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMN--GHIRLA 217

Query: 499 DFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
           DFG    L  +    +       +G   Y++P
Sbjct: 218 DFGSCLKLMEDGTVQSSV----AVGTPDYISP 245

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 42/154 (27%)

Query: 393 IGRGSFGSVYKARLQDGMEF----AIKVFHFSCSN---EDFRA----------------- 428
           +G G FG VY+    +        A+K     C+    E F +                 
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTP 476
                    +++E    G L   L  +   L +L  +   + +  A+ YL   +      
Sbjct: 80  GIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC----- 134

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
            +H D+   N L+       L DFG+++ +  ED
Sbjct: 135 -VHRDIAVRNILVASPECVKLGDFGLSRYIEDED 167

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 61/180 (33%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVF------------HFSCSN-----------EDFR 427
           ++G G  G V +    + G + A+K+             H+  S            E+  
Sbjct: 36  VLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMH 95

Query: 428 A------LVLEYTTNGSLEKVLYSSNYILD-ILQRLN----------IMIDVTSALEYLH 470
                  +++E    G L             I +R +          IM D+ +A+++LH
Sbjct: 96  HGKRCLLIIMECMEGGEL----------FSRIQERGDQAFTEREAAEIMRDIGTAIQFLH 145

Query: 471 FGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              S  I H D+KP N L    + + V  L+DFG AK  T ++   T   T     Y+AP
Sbjct: 146 ---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT-QNALQTPCYTP---YYVAP 198

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 46/178 (25%)

Query: 387 FSANNLIGRGSFGSVYKARLQD-GMEFAIKVF---------------------------- 417
           FS + +IGRG FG VY  R  D G  +A+K                              
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250

Query: 418 -------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH 470
                   ++    D  + +L+    G L   L       +   R     ++   LE++H
Sbjct: 251 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EIILGLEHMH 309

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA-IIGYMAP 527
              +  +++ DLKP N LLD++    +SD G+A   + +     +        GYMAP
Sbjct: 310 ---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK-----KPHASVGTHGYMAP 359

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 405 RLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI--LDILQRLNIMIDV 462
           R+               S + +  + ++     +L+  +     +   +    L+I I +
Sbjct: 114 RMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQI 173

Query: 463 TSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAII 522
             A+E+LH   S  ++H DLKP N     + V  + DFG+   +  +++  T    +   
Sbjct: 174 AEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAY 230

Query: 523 G----------YMAP 527
                      YM+P
Sbjct: 231 ATHTGQVGTKLYMSP 245

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEK----VLYSS 446
            +GRG FG V++A+   D   +AIK             ++ E      LE       +++
Sbjct: 13  CMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNA 72

Query: 447 NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF 500
                  +    M ++    E   +  S+P          + +D     +    
Sbjct: 73  WLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQ 126

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 66.5 bits (162), Expect = 6e-12
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 43/175 (24%)

Query: 393 IGRG--SFGSVYKAR-LQDGMEFAIKVFHF-SCSNEDFRAL------------------- 429
           IG+G     +V  AR    G    ++  +  +CSNE    L                   
Sbjct: 33  IGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYR 92

Query: 430 -----------VLEYTTNGSLEKVL-YSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
                      V  +   GS + ++       ++ L    I+  V  AL+Y+H       
Sbjct: 93  ATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGY 149

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLL--TGEDQSMTQTQTLAIIG---YMAP 527
           +H  +K  + L+  +   +LS       +   G+ Q +        +    +++P
Sbjct: 150 VHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSP 204

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 43/171 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF----AIKVFHFSCS---NEDFRA----------------- 428
           IG G FG V++             AIK      S    E F                   
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTP 476
                    +++E  T G L   L    + LD+   +     +++AL YL    F     
Sbjct: 458 GVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRF----- 512

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            +H D+   N L+  N    L DFG+++ +         ++    I +MAP
Sbjct: 513 -VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAP 561

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 46/177 (25%)

Query: 391 NLIGRGSFGSVYKARLQDG----MEFAIKVFHFSCSNEDFRAL----------------- 429
            +IGRG FG VY   L D     +  A+K  +      +                     
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90

Query: 430 --------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFG 472
                         VL Y  +G L   + +  +   +   +   + V   ++YL    F 
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF- 149

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
                +H DL   N +LD+     ++DFG+A+ +  ++      +T A   + +MA 
Sbjct: 150 -----VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMAL 201

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 64.9 bits (159), Expect = 7e-12
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 60/204 (29%)

Query: 367 QPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFH-FSCSNE 424
              + R    +Q      + ++   ++G+GSFG V K +      E+A+KV +  S  N+
Sbjct: 6   HHSSGRENLYFQGTFA--ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK 63

Query: 425 DFRA------------------------------LVLEYTTNGSL-----EKVLYSSNYI 449
           D                                 +V E  T G L     ++  +S +  
Sbjct: 64  DTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDA 123

Query: 450 LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLL 506
             I      +  V S + Y+H      I+H DLKP N LL   + +    + DFG++   
Sbjct: 124 ARI------IKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174

Query: 507 TGEDQSMTQTQTLAIIG---YMAP 527
             ++  M        IG   Y+AP
Sbjct: 175 -QQNTKMKD-----RIGTAYYIAP 192

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 44/172 (25%)

Query: 393 IGRGSFGSVYKARLQDGMEF---AIKVFHFSCSN----EDFRA----------------- 428
           +G G+FG+V K   Q        A+K+     ++    ++  A                 
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFGYSTP 476
                    LV+E    G L K L  + + +     + ++  V+  ++YL   +F     
Sbjct: 85  GICEAESWMLVMEMAELGPLNKYLQQNRH-VKDKNIIELVHQVSMGMKYLEESNF----- 138

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            +H DL   N LL     A +SDFG++K L  ++            + + AP
Sbjct: 139 -VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAP 189

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 44/159 (27%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIK-----------------------------VFHFSCSN 423
           IG GSFG V++A+L +  E AIK                              F+ +   
Sbjct: 48  IGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDK 107

Query: 424 EDFRA--LVLEY--TTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
           +D     LVLEY   T   + +           + +L     M  +  +L Y+H   S  
Sbjct: 108 KDEVFLNLVLEYVPET---VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIG 161

Query: 477 IIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMT 514
           I H D+KP N LLD  + V  L DFG AK+L    +   
Sbjct: 162 ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI-AGEPNV 199

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 51/251 (20%), Positives = 90/251 (35%), Gaps = 68/251 (27%)

Query: 326 SLEKLLYLNILLIVVVILALKFGLISRCQKRAT-KLPNVSNMQPQASRRRFSYQELLRAT 384
           S+++L+     L +  +L L  G+          +   V++    A       +E+    
Sbjct: 1   SMQQLVLDPGFLGLEPLLDLLLGVHQELGASELAQDKYVADFLQWAEPIVVRLKEVRLQR 60

Query: 385 DGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV--------------------------- 416
           D F    +IGRG+F  V   +++  G  +A+K+                           
Sbjct: 61  DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR 120

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID---------- 461
                 HF+  +E++  LV+EY   G L          L +L +    I           
Sbjct: 121 RWITQLHFAFQDENYLYLVMEYYVGGDL----------LTLLSKFGERIPAEMARFYLAE 170

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTL 519
           +  A++ +H       +H D+KP N LLD     H  L+DFG    L  +    +     
Sbjct: 171 IVMAIDSVH---RLGYVHRDIKPDNILLDRC--GHIRLADFGSCLKLRADGTVRSLV--- 222

Query: 520 AIIG---YMAP 527
             +G   Y++P
Sbjct: 223 -AVGTPDYLSP 232

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 65/187 (34%)

Query: 387 FSANNLIGRGSFGSVYKARLQD-GMEFAIKVF---------------------------- 417
           +    +IGRG+FG V   R +     +A+K+                             
Sbjct: 71  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 130

Query: 418 ----HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMID--------VTSA 465
                ++  ++ +  +V+EY   G L          ++++   ++           V  A
Sbjct: 131 VVQLFYAFQDDRYLYMVMEYMPGGDL----------VNLMSNYDVPEKWARFYTAEVVLA 180

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           L+ +H   S   IH D+KP N LLD +   H  L+DFG    +  E      T     +G
Sbjct: 181 LDAIH---SMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNKEGMVRCDT----AVG 231

Query: 524 ---YMAP 527
              Y++P
Sbjct: 232 TPDYISP 238

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPT-TIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLE 310
              +   + LT +       L  +    ++GL  L+ L++  + L+   P++F     L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 311 SLDLSNNNLSEI-----IPLSLEKL 330
            L+LS N L  +       LSL++L
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNNNLS 320
           + +  +R+  L D    + G ++L  L + + +    +       L  L +L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 321 EIIPLSLEKLLYLNIL 336
            + P +      L+ L
Sbjct: 70  FVAPDAFHFTPRLSRL 85

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 23/142 (16%), Positives = 35/142 (24%), Gaps = 49/142 (34%)

Query: 179 SIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDI 237
              + L     L +L +   +    +       L  LRNL +  + L  +          
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------- 72

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
                                                 P        L  L+L  N L+ 
Sbjct: 73  --------------------------------------PDAFHFTPRLSRLNLSFNALES 94

Query: 298 SIPNSFDDLVSLESLDLSNNNL 319
               +   L SL+ L LS N L
Sbjct: 95  LSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 125 DCNISGGIS--EEIGNLTDLISIDLGGNKLNGSI-SITLGKLQKLQFLSFRGNELEGSIP 181
            C   G +     +    +L  + +   +    +    L  L +L+ L+   + L    P
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
           +       L +L+L  N L          L+ L+ L L  N L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/187 (21%), Positives = 62/187 (33%), Gaps = 71/187 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH----------FSCSNEDFRA------------- 428
           +G G+ G V  A   +   + AIK+             +    +                
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 429 -------------LVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSAL 466
                        +VLE    G L                 Y   +L           A+
Sbjct: 78  IKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQML----------LAV 127

Query: 467 EYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           +YLH      IIH DLKP N LL   +++ +  ++DFG +K+L GE   M       + G
Sbjct: 128 QYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL-GETSLMRT-----LCG 178

Query: 524 ---YMAP 527
              Y+AP
Sbjct: 179 TPTYLAP 185

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 46/177 (25%)

Query: 391 NLIGRGSFGSVYKARLQDGMEF----AIKVFHFSCSNEDFRAL----------------- 429
            +IG+G FG VY     D  +     AIK        +   A                  
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLA 86

Query: 430 --------------VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFG 472
                         +L Y  +G L + + S      +   ++  + V   +EYL    F 
Sbjct: 87  LIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF- 145

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
                +H DL   N +LD++    ++DFG+A+ +   +    Q    A   + + A 
Sbjct: 146 -----VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTAL 197

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 34/165 (20%)

Query: 393 IGRGSFGSVYKARLQDG-MEFAIKVFHFSCSN-EDFRA---------------------- 428
           +G G +G VY+   +   +  A+K         E+F                        
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80

Query: 429 -----LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                ++ E+ T G+L   L   N   +  +  L +   ++SA+EYL        IH DL
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDL 137

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              N L+ +N +  ++DFG+++L+T  D           I + AP
Sbjct: 138 AARNCLVGENHLVKVADFGLSRLMT-GDTYTAHAGAKFPIKWTAP 181

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 44/172 (25%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKVF--------------------------------H 418
           ++G+G FG V   +++  G  +A K                                   
Sbjct: 191 VLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLA 250

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMI-DVTSALEYLHFGYSTPI 477
           ++   +D   LVL     G L+  +Y          R      ++   LE LH      I
Sbjct: 251 YAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERI 307

Query: 478 IHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           ++ DLKP N LLDD+   H  +SD G+A  +        +  T   +GYMAP
Sbjct: 308 VYRDLKPENILLDDH--GHIRISDLGLAVHVPEGQTIKGRVGT---VGYMAP 354

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 28/127 (22%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP 252
           L L GN+ +  +P    N   L  + L +N ++++ +                 F     
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN---------------QSF----- 74

Query: 253 SKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLVSLE 310
               N+  L  +  S N L   IP     GLKSL+ LSL  N +   +P  +F+DL +L 
Sbjct: 75  ---SNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS 129

Query: 311 SLDLSNN 317
            L +  N
Sbjct: 130 HLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 20/122 (16%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
            D+  + L GN+    +   L   + L  +    N +         ++  L  L L  N+
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 200 LSGSIPT-CFGNLTALRNLHLDSNELTSIP-SILWNLK----------------DILYLD 241
           L   IP   F  L +LR L L  N+++ +P     +L                 ++ +L 
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148

Query: 242 FW 243
            W
Sbjct: 149 DW 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ 280
           +  L  +P  +      LYLD   N F   +P ++ N K LT ID S N +      +  
Sbjct: 19  NKGLKVLPKGIPRDVTELYLD--GNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 281 GLKSLQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNNNLSEI 322
            +  L  L L +NRL+  IP  +FD L SL  L L  N++S +
Sbjct: 76  NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 20/68 (29%), Positives = 31/68 (45%)

Query: 269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE 328
            N    +P  +   K L  + L +NR+      SF ++  L +L LS N L  I P + +
Sbjct: 40  GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99

Query: 329 KLLYLNIL 336
            L  L +L
Sbjct: 100 GLKSLRLL 107

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 44/166 (26%), Positives = 63/166 (37%), Gaps = 38/166 (22%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
             IG+G FG V     + G + A+K      + + F A                      
Sbjct: 27  QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 85

Query: 429 ------LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                 +V EY   GSL   L S    +L     L   +DV  A+EYL        +H D
Sbjct: 86  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRD 142

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L+ ++ VA +SDFG+ K     + S TQ      + + AP
Sbjct: 143 LAARNVLVSEDNVAKVSDFGLTK-----EASSTQDTGKLPVKWTAP 183

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 43/180 (23%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVF-------------------------- 417
           D F    ++GRG FG V+  +++  G  +A K                            
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS 244

Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDIL--QRLNIMI-DVTSALEY 468
                  ++   +    LV+     G +   +Y+ +         R       + S LE+
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA-IIGYMAP 527
           LH      II+ DLKP N LLDD+    +SD G+A  L       T+T+  A   G+MAP
Sbjct: 305 LH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAGTPGFMAP 358

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 63.5 bits (154), Expect = 6e-11
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 450 LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
           L    RL + + V   L  LH      ++H  L+P + +LD      L+ F         
Sbjct: 208 LVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV----R 260

Query: 510 DQSMTQTQTLAIIG---YMAP 527
           D +   +            A 
Sbjct: 261 DGASAVSPIGRGFAPPETTAE 281

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 39/154 (25%)

Query: 393 IGRGSFGSVYKARL-----QDGMEFAIKVFHFSCSN--EDFRA----------------- 428
           +G+G+FGSV   R        G   A+K    S  +   DF+                  
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       LV+EY  +G L   L      LD  + L     +   +EYL    S  
Sbjct: 91  GVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRR 147

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
            +H DL   N L++      ++DFG+AKLL  + 
Sbjct: 148 CVHRDLAARNILVESEAHVKIADFGLAKLLPLDK 181

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 60/204 (29%)

Query: 367 QPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------- 416
              + R    +Q      + ++   ++G+GSFG V K +      E+A+KV         
Sbjct: 6   HHSSGRENLYFQGTFA--ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK 63

Query: 417 ----------------------FHFSCSNEDFRALVLEYTTNGSL-----EKVLYSSNYI 449
                                       +     +V E  T G L     ++  +S +  
Sbjct: 64  DTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDA 123

Query: 450 LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLL 506
             I      +  V S + Y+H      I+H DLKP N LL   + +    + DFG++   
Sbjct: 124 ARI------IKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174

Query: 507 TGEDQSMTQTQTLAIIG---YMAP 527
             ++  M        IG   Y+AP
Sbjct: 175 -QQNTKMKD-----RIGTAYYIAP 192

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 38/161 (23%), Positives = 54/161 (33%), Gaps = 57/161 (35%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK-----------------------------VFHFSCS 422
           +G G  G V +    +   +FA+K                             V+    +
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYA 85

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILD-ILQRLN----------IMIDVTSALEYLHF 471
                 +V+E    G L             I  R +          IM  +  A++YLH 
Sbjct: 86  GRKCLLIVMECLDGGEL----------FSRIQDRGDQAFTEREASEIMKSIGEAIQYLH- 134

Query: 472 GYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGE 509
             S  I H D+KP N L      N +  L+DFG AK  TGE
Sbjct: 135 --SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE 173

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 41/173 (23%)

Query: 393 IGRGSFGSVYKARL-----QDGMEFAIKVFHFSCSNEDFRA------------------- 428
           +G G FG V   R        G + A+K                                
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88

Query: 429 -------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                        L++E+  +GSL++ L  +   +++ Q+L   + +   ++YL    S 
Sbjct: 89  KGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SR 145

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL-TGEDQSMTQTQTLAIIGYMAP 527
             +H DL   N L++      + DFG+ K + T ++    +    + + + AP
Sbjct: 146 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAP 198

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 42/148 (28%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCSN 423
           IG G+FG +   + L      AIK+                             ++    
Sbjct: 17  IGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPC 76

Query: 424 EDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             + A+VLE    G SLE +    +    +   L I I + S +EY+H   S  +I+ D+
Sbjct: 77  GKYNAMVLELL--GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDV 131

Query: 483 KPHNKLL------DDNIVAHLSDFGIAK 504
           KP N L+         ++ H+ DF +AK
Sbjct: 132 KPENFLIGRPGNKTQQVI-HIIDFALAK 158

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 41/176 (23%), Positives = 58/176 (32%), Gaps = 56/176 (31%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSCS 422
           IGRGS+G V  A      +  A K                               + +  
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE 76

Query: 423 NEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
           +     LV+E  T G L      K ++  +    I      M DV SA+ Y H      +
Sbjct: 77  DNTDIYLVMELCTGGELFERVVHKRVFRESDAARI------MKDVLSAVAYCH---KLNV 127

Query: 478 IHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
            H DLKP N L      +    L DFG+A       + M        +G   Y++P
Sbjct: 128 AHRDLKPENFLFLTDSPDSPLKLIDFGLAARF-KPGKMMRT-----KVGTPYYVSP 177

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 47/157 (29%), Positives = 62/157 (39%), Gaps = 39/157 (24%)

Query: 393 IGRGSFGSVYKARLQD-GMEFAIK-----------------------------VFHFSCS 422
           IG GSFG VY+A+L D G   AIK                              F+ S  
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGE 121

Query: 423 NEDFRAL--VLEY--TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
            +D   L  VL+Y   T   + +    +   L ++     M  +  +L Y+H   S  I 
Sbjct: 122 KKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGIC 178

Query: 479 HCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMT 514
           H D+KP N LLD D  V  L DFG AK L    +   
Sbjct: 179 HRDIKPQNLLLDPDTAVLKLCDFGSAKQLV-RGEPNV 214

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 44/207 (21%), Positives = 65/207 (31%), Gaps = 63/207 (30%)

Query: 367 QPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------- 416
              + R    +Q  +   D F     +G G+FG V+       G+E  IK          
Sbjct: 6   HHSSGRENLYFQGTID--DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVP 63

Query: 417 ---------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQR 455
                                      +     +V+E    G L         I+    R
Sbjct: 64  MEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGEL------LERIVSAQAR 117

Query: 456 L---------NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIA 503
                      +M  + +AL Y H   S  ++H DLKP N L      +    + DFG+A
Sbjct: 118 GKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174

Query: 504 KLLTGEDQSMTQTQTLAIIG---YMAP 527
           +L    D+  T        G   YMAP
Sbjct: 175 ELF-KSDEHSTN-----AAGTALYMAP 195

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 40/146 (27%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCSN 423
           IG GSFG +Y    +  G E AIK+                              +  + 
Sbjct: 17  IGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAE 76

Query: 424 EDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            D+  +V+E    G SLE +    +    +   L +   + S +EY+H   S   IH D+
Sbjct: 77  GDYNVMVMELL--GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDV 131

Query: 483 KPHNKLL----DDNIVAHLSDFGIAK 504
           KP N L+      N+V ++ DFG+AK
Sbjct: 132 KPDNFLMGLGKKGNLV-YIIDFGLAK 156

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 36/154 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA----------------------- 428
           IG GS+G V+K R    G   AIK F  S  +   +                        
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70

Query: 429 --------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
                   LV EY  + ++   L      +      +I      A+ + H       IH 
Sbjct: 71  FRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH---KHNCIHR 126

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
           D+KP N L+  + V  L DFG A+LLTG      
Sbjct: 127 DVKPENILITKHSVIKLCDFGFARLLTGPSDYYD 160

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 39/150 (26%)

Query: 393 IGRGSFGSVYKARL-----QDGMEFAIKVFHFSCSNE--DFRA----------------- 428
           +G+G+FGSV   R        G   A+K    S      DF                   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       L++EY   GSL   L      +D ++ L     +   +EYL    +  
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKR 165

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
            IH DL   N L+++     + DFG+ K+L
Sbjct: 166 YIHRDLATRNILVENENRVKIGDFGLTKVL 195

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 39/150 (26%)

Query: 393 IGRGSFGSVYKARL-----QDGMEFAIKVFHFSCSN--EDFRA----------------- 428
           +G+G+FGSV   R        G   A+K    S      DF                   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       L++EY   GSL   L      +D ++ L     +   +EYL    +  
Sbjct: 78  GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKR 134

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLL 506
            IH DL   N L+++     + DFG+ K+L
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVL 164

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 69/186 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH----------FSCSNEDFRA------------- 428
           +G G+ G V  A   +   + AI++             +    +                
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 202

Query: 429 -------------LVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSAL 466
                        +VLE    G L                 Y   +L           A+
Sbjct: 203 IKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQML----------LAV 252

Query: 467 EYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQ--TLAI 521
           +YLH      IIH DLKP N LL   +++ +  ++DFG +K+L   + S+ +T   T   
Sbjct: 253 QYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL--GETSLMRTLCGTP-- 305

Query: 522 IGYMAP 527
             Y+AP
Sbjct: 306 -TYLAP 310

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 58/186 (31%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV-------------------------- 416
            D +  +  +G G+FG V++      G  FA K                           
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 417 ---FHFSCSNEDFRALVLEYTTNGSL------EKVLYS----SNYILDILQRLNIMIDVT 463
               H +  +++   ++ E+ + G L      E    S      Y+  +           
Sbjct: 216 LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC---------- 265

Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL--SDFGIAKLLTGEDQSMTQTQTLAI 521
             L ++H       +H DLKP N +        L   DFG+   L  +      T T   
Sbjct: 266 KGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTA-- 320

Query: 522 IGYMAP 527
             + AP
Sbjct: 321 -EFAAP 325

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 75/237 (31%)

Query: 348 GLISRCQKRATKLPNVSNMQPQASRRRFSYQ--ELLRATDGFSANNLIGRGSFGSVYKAR 405
           G +   +   +   N+  +      +        ++R          + +G F  +    
Sbjct: 1   GPLGSMKDILSNYSNLIYLNKYVKEKDKYINDYRIIR---------TLNQGKFNKIILCE 51

Query: 406 LQDGMEFAI---------KVFHFSCSNEDFRA---------------------------- 428
            +D   +A+         K   F+ SN D  +                            
Sbjct: 52  -KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEG 110

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRL-------NIMIDVTSALEYLHFG 472
                    ++ EY  N S+ K       +               I+  V ++  Y+H  
Sbjct: 111 IITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH-- 168

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ--TLAIIGYMAP 527
               I H D+KP N L+D N    LSDFG ++ +        +    T     +M P
Sbjct: 169 NEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVD---KKIKGSRGTYE---FMPP 219

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 7/130 (5%)

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGP 250
            LDL  N L       F  LT+L  L+L  N+L S+P+ +   L  + YL+  +N     
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 251 LPSKI-GNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLV 307
           LP+ +   L  L  +  +  N L  +P  +   L  L+ L L  N+L+ S+P+  FD L 
Sbjct: 91  LPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148

Query: 308 SLESLDLSNN 317
           SL+ + L +N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 26/128 (20%)

Query: 138 NLTDLISIDLGGNKLNGSISITLG---KLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD 194
            LT L  + LGGNKL    S+  G   KL  L +L+   N+L+     V   L  L +L 
Sbjct: 50  ELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106

Query: 195 LRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPS-ILWNLK----------------- 235
           L  N+L  S+P   F  LT L++L L  N+L S+P  +   L                  
Sbjct: 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165

Query: 236 DILYLDFW 243
            I YL  W
Sbjct: 166 GIRYLSEW 173

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
           T +D   N+L          L SL  L LG N+LQ      F+ L SL  L+LS N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 322 IIPL---SLEKLLYLN 334
           +       L +L  L 
Sbjct: 91  LPNGVFDKLTQLKELA 106

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 52/175 (29%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV-------------------------------FHFS 420
           +G G++G V   R     +E AIK+                                +  
Sbjct: 45  LGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDF 104

Query: 421 CSNEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
             ++    LV+E    G L      ++ ++      I      +  V S + YLH     
Sbjct: 105 FEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVI------IKQVLSGVTYLH---KH 155

Query: 476 PIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            I+H DLKP N LL   + + +  + DFG++ +   + +   +  T     Y+AP
Sbjct: 156 NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGT---AYYIAP 207

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 43/208 (20%), Positives = 68/208 (32%), Gaps = 53/208 (25%)

Query: 361 PNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--- 416
           P        A+   F        +D +    ++G+GSFG V   +    G E A+KV   
Sbjct: 2   PGSMMDHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISK 61

Query: 417 -----------------------------FHFSCSNEDFRALVLEYTTNGSL-----EKV 442
                                         +    ++ +  LV E  T G L      + 
Sbjct: 62  RQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK 121

Query: 443 LYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSD 499
            +S      I      +  V S + Y+H      I+H DLKP N LL     +    + D
Sbjct: 122 RFSEVDAARI------IRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIID 172

Query: 500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           FG++       +   +  T     Y+AP
Sbjct: 173 FGLSTHFEASKKMKDKIGT---AYYIAP 197

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 68/188 (36%)

Query: 387 FSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSN--EDFRA--------------- 428
            S   ++G G FG V+K      G++ A K+         E+ +                
Sbjct: 91  VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ 150

Query: 429 ------------LVLEYTTNGSL------EKVLYS----SNYILDILQRLNIMIDVTSAL 466
                       LV+EY   G L      E    +      ++  I             +
Sbjct: 151 LYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQIC----------EGI 200

Query: 467 EYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAII 522
            ++H  Y   I+H DLKP N L        I   + DFG+A+      + +         
Sbjct: 201 RHMHQMY---ILHLDLKPENILCVNRDAKQIK--IIDFGLARRY-KPREKLKV-----NF 249

Query: 523 G---YMAP 527
           G   ++AP
Sbjct: 250 GTPEFLAP 257

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 54/166 (32%)

Query: 393 IGRGSFGSVYKARLQD--------GMEFAIKVFHFSCSN--EDFRA-------------- 428
           +G+G+F  ++K   ++          E  +KV   +  N  E F                
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75

Query: 429 -------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL---HFG 472
                        LV E+   GSL+  L  +   ++IL +L +   + +A+ +L      
Sbjct: 76  LNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTL- 134

Query: 473 YSTPIIHCDL--------KPHNKLLDDNIVAHLSDFGIAKLLTGED 510
                IH ++        +  ++   +     LSD GI+  +  +D
Sbjct: 135 -----IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD 175

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 42/148 (28%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCSN 423
           IG GSFG +++   L +  + AIK                              ++    
Sbjct: 18  IGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE 77

Query: 424 EDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                LV++    G SLE +L        +         + + ++ +H      +++ D+
Sbjct: 78  GLHNVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDI 132

Query: 483 KPHNKLL------DDNIVAHLSDFGIAK 504
           KP N L+      + N++ ++ DFG+ K
Sbjct: 133 KPDNFLIGRPNSKNANMI-YVVDFGMVK 159

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 58/177 (32%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSCS 422
           +G G+FG V++      G  F  K                               H +  
Sbjct: 59  LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE 118

Query: 423 NEDFRALVLEYTTNGSL------EKVLYS----SNYILDILQRLNIMIDVTSALEYLHFG 472
           ++    L+LE+ + G L      E    S     NY+                L+++H  
Sbjct: 119 DKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQAC----------EGLKHMH-- 166

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHL--SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
               I+H D+KP N + +    + +   DFG+A  L   D+ +  T   A   + AP
Sbjct: 167 -EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL-NPDEIVKVTTATA--EFAAP 219

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 57/176 (32%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCSN 423
           +GRG FG V++         +  K                              H S  +
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES 72

Query: 424 EDFRALVLEYTTNGSL------EKVLYS----SNYILDILQRLNIMIDVTSALEYLHFGY 473
            +   ++ E+ +   +           +     +Y+  +            AL++LH   
Sbjct: 73  MEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVC----------EALQFLHSHN 122

Query: 474 STPIIHCDLKPHNKLLDDNIVAHL--SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              I H D++P N +      + +   +FG A+ L     +     T     Y AP
Sbjct: 123 ---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK-PGDNFRLLFTAP--EYYAP 172

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 42/187 (22%), Positives = 60/187 (32%), Gaps = 71/187 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH--------FSCSNEDFRA--------------- 428
           +G G F  V K R    G+E+A K              S E+                  
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 429 ------------LVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALE 467
                       L+LE  + G L     +K   S    +++I  IL            + 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQIL----------DGVN 129

Query: 468 YLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           YLH   +  I H DLKP N +L           L DFG+A  +  +           I G
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI-EDGVEFKN-----IFG 180

Query: 524 ---YMAP 527
              ++AP
Sbjct: 181 TPEFVAP 187

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 43/147 (29%)

Query: 392 LIGRGSFGSVYKARLQD---GMEFAIKVFHFSCSN-EDFRA------------------- 428
             G       ++A   D     + A+          +D                      
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       +V E+   GSL++V  +S      +  +  M  + +A +  H      
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAG 149

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIA 503
           +      P    +  +    L+     
Sbjct: 150 VALSIDHPSRVRVSIDGDVVLAYPATM 176

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 36/157 (22%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA--------------------- 428
            L+G GS+G V K R    G   AIK F  S  ++  +                      
Sbjct: 31  GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLL 90

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                     LV E+  + ++   L      LD       +  + + + + H   S  II
Sbjct: 91  EVCKKKKRWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCH---SHNII 146

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           H D+KP N L+  + V  L DFG A+ L    +    
Sbjct: 147 HRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDD 183

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 48/179 (26%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV--------------------------- 416
           D F     +G GSFG V   + ++ G  +A+K+                           
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                  FS  +     +V+EY   G +   L       +   R      +    EYLH 
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAA-QIVLTFEYLH- 158

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG---YMAP 527
             S  +I+ DLKP N L+D      ++DFG AK + G      +T TL   G    +AP
Sbjct: 159 --SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWTLC--GTPEALAP 207

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 65/206 (31%)

Query: 368 PQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV---------- 416
           P+ ++ R S Q  L+  D F  + ++G+GSFG V+ A  +     FAIK           
Sbjct: 1   PELNKERPSLQIKLKIED-FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDD 59

Query: 417 -------------------F----HFSCSNEDFRALVLEYTTNGSLEKVLYSSN------ 447
                              F      +   ++    V+EY   G L   + S +      
Sbjct: 60  DVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSR 119

Query: 448 ---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGI 502
              Y  +I+            L++LH   S  I++ DLK  N LLD +  I   ++DFG+
Sbjct: 120 ATFYAAEII----------LGLQFLH---SKGIVYRDLKLDNILLDKDGHIK--IADFGM 164

Query: 503 AKLLTGEDQSMTQTQTL-AIIGYMAP 527
            K     D     T T      Y+AP
Sbjct: 165 CKENMLGDAK---TNTFCGTPDYIAP 187

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 61/181 (33%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------FHF 419
           +GRG F  V +      G E+A K                                  H 
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 420 SCSNEDFRALVLEYTTNGSL-EKVLYSSNYILDILQRL------NIMIDVTSALEYLHFG 472
              N     L+LEY   G +          + ++ + +       ++  +   + YLH  
Sbjct: 97  VYENTSEIILILEYAAGGEIFSLC------LPELAEMVSENDVIRLIKQILEGVYYLHQN 150

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAH---LSDFGIAKLLTGEDQSMTQTQTLAIIG---YMA 526
               I+H DLKP N LL          + DFG+++ + G    + +     I+G   Y+A
Sbjct: 151 N---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI-GHACELRE-----IMGTPEYLA 201

Query: 527 P 527
           P
Sbjct: 202 P 202

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 47/173 (27%)

Query: 384 TDGFSANNLIGRGSFGSVYKARLQD-GMEFAIK-VF--------------------H--- 418
            D F    + G+G+FG+V   + +  GM  AIK V                     H   
Sbjct: 22  MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNI 81

Query: 419 -------FSCSNEDFR----ALVLEY--TTNGSLEKVLYSSNYILDILQRLNI---MIDV 462
                  ++    D R     +V+EY   T   L +   +          + I   +  +
Sbjct: 82  VQLQSYFYTLGERDRRDIYLNVVMEYVPDT---LHRCCRNYYRRQVAPPPILIKVFLFQL 138

Query: 463 TSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMT 514
             ++  LH   S  + H D+KPHN L++  +    L DFG AK L    +   
Sbjct: 139 IRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKL-SPSEPNV 189

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 47/187 (25%), Positives = 66/187 (35%), Gaps = 78/187 (41%)

Query: 392 LIGRGSFGSVYKARLQDGME-FAIKVF--------------------------------H 418
            +G GSFG V+  R +     +A+KV                                  
Sbjct: 13  TLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMW 72

Query: 419 FSCSNEDFRALVLEYTTNGSL-----------EKV--LYSSNYILDILQRLNIMIDVTSA 465
            +  +     ++++Y   G L             V   Y++              +V  A
Sbjct: 73  GTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAA--------------EVCLA 118

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           LEYLH   S  II+ DLKP N LLD N   H  ++DFG AK +         T TL   G
Sbjct: 119 LEYLH---SKDIIYRDLKPENILLDKN--GHIKITDFGFAKYVP------DVTYTLC--G 165

Query: 524 ---YMAP 527
              Y+AP
Sbjct: 166 TPDYIAP 172

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 429 LVLEYTTNGSLEKVL------YSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
             L      +L+          S++  L    RL + + V   L  LH      ++H  L
Sbjct: 176 FFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYL 232

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +P + +LD      L+ F       G     + ++     G+  P
Sbjct: 233 RPVDIVLDQRGGVFLTGFEHLVRD-GARVVSSVSR-----GFEPP 271

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFS 420
           ++G+    +  +A   + G  F + V +F+
Sbjct: 80  VLGQEDPYAYLEATDQETGESFEVHVPYFT 109

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 41/187 (21%), Positives = 59/187 (31%), Gaps = 71/187 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFH--------FSCSNEDFRA--------------- 428
           +G G F  V K R    G+E+A K                E+                  
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 429 ------------LVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALE 467
                       L+LE  + G L     +K   S    +++I  IL            + 
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQIL----------DGVN 129

Query: 468 YLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           YLH   +  I H DLKP N +L           L DFG+A  +  +           I G
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI-EDGVEFKN-----IFG 180

Query: 524 ---YMAP 527
              ++AP
Sbjct: 181 TPEFVAP 187

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 45/187 (24%), Positives = 60/187 (32%), Gaps = 71/187 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------------- 416
           +G G F  V K R    G E+A K                                    
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 417 FHFSCSNEDFRALVLEYTTNGSL-----EKVLYS----SNYILDILQRLNIMIDVTSALE 467
            H    N+    L+LE  + G L     EK   +    + ++  IL            + 
Sbjct: 73  LHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQIL----------DGVH 122

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAH----LSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           YLH   S  I H DLKP N +L D  V +    L DFGIA  +              I G
Sbjct: 123 YLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI-EAGNEFKN-----IFG 173

Query: 524 ---YMAP 527
              ++AP
Sbjct: 174 TPEFVAP 180

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 58/179 (32%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKVF--------------------------------H 418
           L+G+G+FG V   + +  G  +A+K+                                  
Sbjct: 155 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALK 214

Query: 419 FSCSNEDFRALVLEYTTNGSL------EKVLYSSN---YILDILQRLNIMIDVTSALEYL 469
           +S    D    V+EY   G L      E+V        Y  +I+          SAL+YL
Sbjct: 215 YSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV----------SALDYL 264

Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL-AIIGYMAP 527
           H   +  +++ DLK  N +LD +    ++DFG+ K    +  +    +T      Y+AP
Sbjct: 265 HSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT---MKTFCGTPEYLAP 318

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 28/128 (21%)

Query: 193 LDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL 251
           L L  N+L        FG L  L  L L  N+LT I                 N F    
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------------NAF---- 74

Query: 252 PSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDLVSL 309
                    +  +    N +  +I   +  GL  L+ L+L  N++   +   SF+ L SL
Sbjct: 75  ----EGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSL 128

Query: 310 ESLDLSNN 317
            SL+L++N
Sbjct: 129 TSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 140 TDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
                + L  N+L   S     G+L  L  L  + N+L G  PN     + + +L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 199 KLSGSIPT-CFGNLTALRNLHLDSNELTSIP 228
           K+   I    F  L  L+ L+L  N+++ + 
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ 280
              L  IP  +      L L+  + L         G L  L +++  RN L G  P   +
Sbjct: 17  GRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 281 GLKSLQFLSLGHNRLQGSIPN-SFDDLVSLESLDLSNNNLSEI 322
           G   +Q L LG N+++  I N  F  L  L++L+L +N +S +
Sbjct: 76  GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCV 117

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 269 NNLLGDIPTT--IQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS 326
           +N LG I +      L  L  L L  N+L G  PN+F+    ++ L L  N + EI    
Sbjct: 38  DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97

Query: 327 LEKLLYLNIL 336
              L  L  L
Sbjct: 98  FLGLHQLKTL 107

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 37/180 (20%)

Query: 367 QPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDF 426
              +S R   Y +     + +     +G G++G VYKA+   G   A+K       +E  
Sbjct: 5   HHHSSGRENLYFQ--GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGI 62

Query: 427 -----R--------------------------ALVLEYTTNGSLEKVLYSSNYILDILQR 455
                R                           LV E+     L+KVL  +   L   Q 
Sbjct: 63  PSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQI 121

Query: 456 LNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
              +  +   + + H      I+H DLKP N L++ +    L+DFG+A+      +S T 
Sbjct: 122 KIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTH 178

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 63/188 (33%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------- 416
             +G G++G V   +      E AIKV                                 
Sbjct: 42  RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK 101

Query: 417 ---------FHFSCSNEDFRALVLEYTTNGSL-----EKVLYSSNYILDILQRLNIMIDV 462
                          ++ +  LV E+   G L      +  +      +I      M  +
Sbjct: 102 SLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANI------MKQI 155

Query: 463 TSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
            S + YLH      I+H D+KP N LL   +  +   + DFG++   + + +   +  T 
Sbjct: 156 LSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGT- 211

Query: 520 AIIGYMAP 527
               Y+AP
Sbjct: 212 --AYYIAP 217

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 71/185 (38%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKV----------------------------F----H 418
           L+G+G+FG V   R +  G  +A+K+                            F     
Sbjct: 12  LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 71

Query: 419 FSCSNEDFRALVLEYTTNGSL-----------EK--VLYSSNYILDILQRLNIMIDVTSA 465
           ++    D    V+EY   G L           E+    Y +              ++ SA
Sbjct: 72  YAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA--------------EIVSA 117

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTL-AII 522
           LEYLH   S  +++ D+K  N +LD +   H  ++DFG+ K    +  +    +T     
Sbjct: 118 LEYLH---SRDVVYRDIKLENLMLDKD--GHIKITDFGLCKEGISDGAT---MKTFCGTP 169

Query: 523 GYMAP 527
            Y+AP
Sbjct: 170 EYLAP 174

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 56.6 bits (136), Expect = 8e-09
 Identities = 23/195 (11%), Positives = 46/195 (23%), Gaps = 22/195 (11%)

Query: 346 KFGLISRCQKRAT------KLPNVSNMQPQASRRRFSYQEL-LRATDGFSANNLIGRGSF 398
              ++   +          K+  +     ++   R            G S      R   
Sbjct: 74  DRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRL 133

Query: 399 GSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKV------LYSSNYILDI 452
                A          ++            L+L    +  LE +      +Y       I
Sbjct: 134 LLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGI 193

Query: 453 LQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS 512
           L    +   +      L    S  ++H    P N  +  +    L D      +      
Sbjct: 194 LALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVG----- 245

Query: 513 MTQTQTLAIIGYMAP 527
            T+    ++    AP
Sbjct: 246 -TRGPASSVPVTYAP 259

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFS 420
            +  G    V+  R ++   +FA+KVF   
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMG 98

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 20/128 (15%)

Query: 217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRI---DFSRNNLLG 273
           LH     +  + + L  LK   +L   +N        KI +L  +  +      RN +  
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLI-- 82

Query: 274 DIPTTIQGL----KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS-LE 328
                I+ L     +L+ L + +N++  S+    + LV+L  L +SNN ++    +  L 
Sbjct: 83  ---KKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 329 KLLYLNIL 336
            L  L  L
Sbjct: 138 ALDKLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 34/188 (18%)

Query: 151 KLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGN 210
           +    ++    K++    L      +E  +   L  L     L L  N +   I +    
Sbjct: 16  ERKSVVATEAEKVE----LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSG 68

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           +  LR L L  N +  I ++      +  L    N        +I +L  +         
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYN--------QIASLSGI--------- 111

Query: 271 LLGDIPTTIQGLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK 329
                    + L +L+ L + +N++      +    L  LE L L+ N L      +   
Sbjct: 112 ---------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162

Query: 330 LLYLNILL 337
             Y   ++
Sbjct: 163 SEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 132 ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF 191
           +   +  L     + L  N +   IS +L  ++ L+ LS   N ++  I N+      L 
Sbjct: 40  MDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLKDILYLDFWSNLFVG 249
           +L +  N+++ S+ +    L  LR L++ +N++T+   I  L  L  +  L    N    
Sbjct: 97  ELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 250 PLPSK----------IGNLKVLTRID 265
                          +  L  L ++D
Sbjct: 155 DYKENNATSEYRIEVVKRLPNLKKLD 180

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 56.9 bits (137), Expect = 9e-09
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 40/146 (27%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCSN 423
           IG GSFG +Y    +Q   E AIK+                              +    
Sbjct: 15  IGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVE 74

Query: 424 EDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            D+  LV++    G SLE +    +  L +   L +   + + +E++H   S   +H D+
Sbjct: 75  GDYNVLVMDLL--GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDI 129

Query: 483 KPHNKLL----DDNIVAHLSDFGIAK 504
           KP N L+      N V ++ DFG+AK
Sbjct: 130 KPDNFLMGLGRRANQV-YIIDFGLAK 154

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 39/156 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVF--------------------------H------ 418
           L+G GS+G V +    +     A+K+                           H      
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

Query: 419 ---FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                   +    +V+EY   G  E +         + Q       +   LEYLH   S 
Sbjct: 72  VDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQ 128

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
            I+H D+KP N LL       +S  G+A+ L     
Sbjct: 129 GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAA 164

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 43/196 (21%), Positives = 62/196 (31%), Gaps = 71/196 (36%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVF------------------------- 417
            D +     +G G F  V K R    G+++A K                           
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 418 HFSCSN--------EDFRA--LVLEYTTNGSL-----EKVLYS----SNYILDILQRLNI 458
                N        E+     L+LE    G L     EK   +    + ++  IL     
Sbjct: 70  EIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQIL----- 124

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH----LSDFGIAKLLTGEDQSMT 514
                + + YLH   S  I H DLKP N +L D  V      + DFG+A  +        
Sbjct: 125 -----NGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI-DFGNEFK 175

Query: 515 QTQTLAIIG---YMAP 527
                 I G   ++AP
Sbjct: 176 N-----IFGTPEFVAP 186

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 68/184 (36%)

Query: 392 LIGRGSFGSVYKARLQDGME-FAIKV-----------------------------F---- 417
           ++G+GSFG V  AR+++  + +A+KV                             F    
Sbjct: 30  VLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQL 89

Query: 418 HFSCSNEDFRALVLEYTTNGSL-----------EK--VLYSSNYILDILQRLNIMIDVTS 464
                  D    V+E+   G L           E     Y++              ++ S
Sbjct: 90  FCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAA--------------EIIS 135

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL-AIIG 523
           AL +LH      II+ DLK  N LLD      L+DFG+ K       +   T T      
Sbjct: 136 ALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVT---TATFCGTPD 189

Query: 524 YMAP 527
           Y+AP
Sbjct: 190 YIAP 193

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 48/180 (26%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +G+GSFG VY+   +  ++       AIK  + + S  +                     
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92

Query: 430 -------------VLEYTTNGSLEKVL---------YSSNYILDILQRLNIMIDVTSALE 467
                        ++E  T G L+  L                 + + + +  ++   + 
Sbjct: 93  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA 152

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           YL+   +   +H DL   N ++ ++    + DFG+ + +   D      + L  + +M+P
Sbjct: 153 YLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP 209

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 35/154 (22%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDF-----R-------------------- 427
           IG G++G VYKA+   G  FA+K       +E       R                    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69

Query: 428 ------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                  LV E+     L+K+L      L+ +   + ++ + + + Y H      ++H D
Sbjct: 70  HTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRD 125

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           LKP N L++      ++DFG+A+      +  T 
Sbjct: 126 LKPQNLLINREGELKIADFGLARAFGIPVRKYTH 159

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 42/215 (19%), Positives = 64/215 (29%), Gaps = 75/215 (34%)

Query: 361 PNVSNMQPQASRRRFSYQ--ELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKVF 417
             +S      +R R        L          ++G+GSFG V  +  +     +A+K+ 
Sbjct: 324 NTISKFDNNGNRDRMKLTDFNFLM---------VLGKGSFGKVMLSERKGTDELYAVKIL 374

Query: 418 ---------------------------------HFSCSNEDFRALVLEYTTNGSL----- 439
                                            H      D    V+EY   G L     
Sbjct: 375 KKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQ 434

Query: 440 -EKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA 495
                   +   Y  +I             L +L    S  II+ DLK  N +LD     
Sbjct: 435 QVGRFKEPHAVFYAAEIA----------IGLFFLQ---SKGIIYRDLKLDNVMLDSE--G 479

Query: 496 H--LSDFGIAKLLTGEDQSMTQTQTLA-IIGYMAP 527
           H  ++DFG+ K    +      T+T      Y+AP
Sbjct: 480 HIKIADFGMCKENIWDGV---TTKTFCGTPDYIAP 511

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 54/183 (29%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKV-----------------F--------HFS------- 420
           +G G FGSV +  L+     ++KV                 F         FS       
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101

Query: 421 ---CSNEDFRA-----LVLEYTTNGSLEKVL-----YSSNYILDILQRLNIMIDVTSALE 467
              C     +      ++L +   G L   L      +    + +   L  M+D+   +E
Sbjct: 102 LGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME 161

Query: 468 YL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
           YL   +F      +H DL   N +L D++   ++DFG++K +   D           + +
Sbjct: 162 YLSNRNF------LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKW 215

Query: 525 MAP 527
           +A 
Sbjct: 216 IAI 218

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 40/177 (22%), Positives = 55/177 (31%), Gaps = 58/177 (32%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCS 422
            IG G+FG     R        A+K                             F     
Sbjct: 27  DIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVIL 86

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLN----------IMIDVTSALEYLHFG 472
                A+++EY + G L         I +   R +          ++    S + Y H  
Sbjct: 87  TPTHLAIIMEYASGGEL------YERICN-AGRFSEDEARFFFQQLL----SGVSYCH-- 133

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHL--SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            S  I H DLK  N LLD +    L   DFG +K      Q  +   T A   Y+AP
Sbjct: 134 -SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPA---YIAP 186

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 37/173 (21%), Positives = 59/173 (34%), Gaps = 43/173 (24%)

Query: 393 IGRGSFGSVYKARLQD-----GMEFAIKVFHFSCS---NEDFRA---------------- 428
           +G G FG V            G   A+K             ++                 
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98

Query: 429 -------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
                        LV+EY   GSL   L   +  + + Q L     +   + YLH   + 
Sbjct: 99  KGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQ 153

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL-TGEDQSMTQTQTLAIIGYMAP 527
             IH DL   N LLD++ +  + DFG+AK +  G +    +    + + + AP
Sbjct: 154 HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAP 206

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 47/162 (29%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK------------------------------------ 415
           +G G F +VYKAR        AIK                                    
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77

Query: 416 --VFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              F     ++   +LV ++     LE ++  ++ +L        M+     LEYLH   
Sbjct: 78  LDAFG----HKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH--- 129

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
              I+H DLKP+N LLD+N V  L+DFG+AK     +++ T 
Sbjct: 130 QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTH 171

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 27/109 (24%)

Query: 429 LVLEYTTNGSLEKVLYSSNYILDILQ--RLN------IMIDVTSALEYLHFGYSTPIIHC 480
           +V E    G +          +++     L+         D+   +EYLH      IIH 
Sbjct: 115 MVFELVNQGPV----------MEVPTLKPLSEDQARFYFQDLIKGIEYLH---YQKIIHR 161

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ--TLAIIGYMAP 527
           D+KP N L+ ++    ++DFG++    G D ++      T A   +MAP
Sbjct: 162 DIKPSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPA---FMAP 206

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 35/131 (26%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS----ILWNLKDILYLDFWSNLFV 248
           L+L  NKL       F  LT L  L L  N++ S+P      L  L  ILYL        
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-ILYLH------- 84

Query: 249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDDL 306
                                N L  +P  +   L  L+ L+L  N+L+ S+P+  FD L
Sbjct: 85  --------------------ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRL 123

Query: 307 VSLESLDLSNN 317
            SL+ + L  N
Sbjct: 124 TSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
           +    ++L  NKL         KL +L  LS   N+++     V   L  L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 200 LSGSIPT-CFGNLTALRNLHLDSNELTSIPS-ILWNLK-----------------DILYL 240
           L  S+P   F  LT L+ L LD+N+L S+P  I   L                   I YL
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146

Query: 241 DFW 243
             W
Sbjct: 147 SRW 149

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS-FDDLVSLESLDLSNNNLS 320
           TR++   N L          L  L  LSL  N++Q S+P+  FD L  L  L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 321 EIIPLSLEKLLYLNIL 336
            +     +KL  L  L
Sbjct: 90  SLPNGVFDKLTQLKEL 105

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 71/188 (37%)

Query: 392 LIGRGSFGSVYKARLQDGME----FAIKVF------------------------------ 417
           ++G G++G V+  R   G +    +A+KV                               
Sbjct: 61  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 120

Query: 418 ----HFSCSNEDFRALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTS 464
               H++   E    L+L+Y   G L   L             Y+ +I+           
Sbjct: 121 LVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIV----------L 170

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQSMTQTQTLAII 522
           ALE+LH      II+ D+K  N LLD N  +V  L+DFG++K    ++            
Sbjct: 171 ALEHLH---KLGIIYRDIKLENILLDSNGHVV--LTDFGLSKEFVADETERAYD----FC 221

Query: 523 G---YMAP 527
           G   YMAP
Sbjct: 222 GTIEYMAP 229

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 36/155 (23%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDF-----R------------------- 427
           IG G++G+V+KA+  +     A+K       +E       R                   
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDV 69

Query: 428 -------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
                   LV E+     L+K   S N  LD     + +  +   L + H   S  ++H 
Sbjct: 70  LHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHR 125

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           DLKP N L++ N    L++FG+A+      +  + 
Sbjct: 126 DLKPQNLLINRNGELKLANFGLARAFGIPVRCYSA 160

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 55/184 (29%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKV-----------------F--------HFS------- 420
           +G+G FGSV +A+L+      +KV                 F         F        
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90

Query: 421 ---CSNEDFRA------LVLEYTTNGSLEKVLYSS-----NYILDILQRLNIMIDVTSAL 466
                    +       ++L +  +G L   L +S      + L +   +  M+D+   +
Sbjct: 91  VGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGM 150

Query: 467 EYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
           EYL   +F      IH DL   N +L +++   ++DFG+++ +   D       +   + 
Sbjct: 151 EYLSSRNF------IHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVK 204

Query: 524 YMAP 527
           ++A 
Sbjct: 205 WLAL 208

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 210 NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRN 269
           N    R L L   ++  I ++   L     +DF  N        K+              
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-----RKLDGF----------- 60

Query: 270 NLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNN---LSEIIPLS 326
                       L+ L+ L + +NR+          L  L  L L+NN+   L ++ PL+
Sbjct: 61  ----------PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 327 -LEKLLYLNIL 336
            L+ L YL IL
Sbjct: 111 SLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 133 SEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQ 192
           + +  N      +DL G K+   I      L +   + F  NE+   +      L  L  
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKT 68

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLKDILYLDFWSN----- 245
           L +  N++          L  L  L L +N L  +  +  L +LK + YL    N     
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 246 ----LFVGPLPSKIGNLKVLTRIDFSR 268
               L+V      I  +  +  +DF +
Sbjct: 129 KHYRLYV------IYKVPQVRVLDFQK 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 184 LCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFW 243
             +     +LDLRG K+   I      L     +    NE+  +      L+ +  L   
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVN 72

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRNNL--LGDIPTTIQGLKSLQFLSLGHN 293
           +N            L  LT +  + N+L  LGD+   +  LKSL +L +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 41/164 (25%)

Query: 42  NLSTLKVFDVDNNYV-----LGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL 96
           N    +  D+    +     LG      D +  SDN +         L      + LK L
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-------LDGFPLLRRLKTL 69

Query: 97  DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI 156
            ++ N +                      C I  G+ + + +LT+L    L  N L    
Sbjct: 70  LVNNNRI----------------------CRIGEGLDQALPDLTEL---ILTNNSLVELG 104

Query: 157 SIT-LGKLQKLQFLSFRGN---ELEGSIPNVLCHLAVLFQLDLR 196
            +  L  L+ L +L    N     +     V+  +  +  LD +
Sbjct: 105 DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 60/167 (35%)

Query: 392 LIGRGSFGSVYKAR------LQDGMEFAIKVFH--------------------------- 418
            IG+G FG +Y A       +       +KV                             
Sbjct: 42  PIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIR 101

Query: 419 -----------------FSCSNEDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMI 460
                               + + +R ++++    G  L+K+  ++         L + +
Sbjct: 102 TRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF--GSDLQKIYEANAKRFSRKTVLQLSL 159

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAK 504
            +   LEY+H       +H D+K  N LL   + + V +L D+G+A 
Sbjct: 160 RILDILEYIH---EHEYVHGDIKASNLLLNYKNPDQV-YLVDYGLAY 202

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 52/186 (27%), Positives = 70/186 (37%), Gaps = 72/186 (38%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKV-----------------------------F---- 417
           +IG+GSFG V  AR +   + +A+KV                             F    
Sbjct: 45  VIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 104

Query: 418 HFSCSNEDFRALVLEYTTNGSL-----------EK--VLYSSNYILDILQRLNIMIDVTS 464
           HFS    D    VL+Y   G L           E     Y++              ++ S
Sbjct: 105 HFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAA--------------EIAS 150

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQSMTQTQTL-AI 521
           AL YLH   S  I++ DLKP N LLD    IV  L+DFG+ K     + +   T T    
Sbjct: 151 ALGYLH---SLNIVYRDLKPENILLDSQGHIV--LTDFGLCKENIEHNST---TSTFCGT 202

Query: 522 IGYMAP 527
             Y+AP
Sbjct: 203 PEYLAP 208

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 46/186 (24%), Positives = 62/186 (33%), Gaps = 72/186 (38%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKV-----------------------------F---- 417
           +IGRGS+  V   RL+     +A+KV                             F    
Sbjct: 16  VIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGL 75

Query: 418 HFSCSNEDFRALVLEYTTNGSL-----------EK--VLYSSNYILDILQRLNIMIDVTS 464
           H     E     V+EY   G L           E+    YS+              +++ 
Sbjct: 76  HSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSA--------------EISL 121

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQSMTQTQTL-AI 521
           AL YLH      II+ DLK  N LLD    I   L+D+G+ K           T T    
Sbjct: 122 ALNYLH---ERGIIYRDLKLDNVLLDSEGHIK--LTDYGMCKEGLRPGD---TTSTFCGT 173

Query: 522 IGYMAP 527
             Y+AP
Sbjct: 174 PNYIAP 179

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 60/166 (36%)

Query: 393 IGRGSFGSVYKAR---------LQDGMEFAIKV--------------------------- 416
             R + G +Y+A               +F++K+                           
Sbjct: 50  QTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWK 109

Query: 417 ------------FHFSCSNED-FRALVLEYTTNG-SLEKVL-YSSNYILDILQRLNIMID 461
                             ++D +R LVL     G SL+  L  S  ++L     L +   
Sbjct: 110 KLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL--GRSLQSALDVSPKHVLSERSVLQVACR 167

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAK 504
           +  ALE+LH       +H ++   N  +   D + V  L+ +G A 
Sbjct: 168 LLDALEFLH---ENEYVHGNVTAENIFVDPEDQSQV-TLAGYGFAF 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 96/555 (17%), Positives = 162/555 (29%), Gaps = 160/555 (28%)

Query: 45  TLKVFDVDNNYVLGRLSSIVD---ELSLSDNY--LTSSTPELSFLSSMSNCKYLKKLDIS 99
           TL++F      +L +   +V    E  L  NY  L S         SM    Y+++ D  
Sbjct: 64  TLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 100 RNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISIT 159
            N    F    V      L+            + + +  L    ++ + G  + GS    
Sbjct: 120 YNDNQVFAKYNVSRLQPYLK------------LRQALLELRPAKNVLIDG--VLGS---- 161

Query: 160 LGK-------------LQKLQF----LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL-- 200
            GK               K+ F    L+ +      ++  +L  L  L+Q+D        
Sbjct: 162 -GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSD 218

Query: 201 -SGSIPTCFGNL-TALRNLHLDS---NELTSIPSIL---WNLKDILYLDFWSNLFVGPLP 252
            S +I     ++   LR L       N L     +L    N K     +           
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNL---------S 265

Query: 253 SKIGNLKVLTR----IDFSRNNLLGDIPT--TIQGL---KSLQFLSL------------- 290
            KI  L + TR     DF        I        L   +    L               
Sbjct: 266 CKI--L-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 291 --GHNRLQGSIPNSFDDLVSL--ESLDLSNNNLSEIIPLSLEKL-------LY------- 332
              + R    I  S  D ++       ++ + L+ II  SL  L       ++       
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 333 --LNILLIVVVIL--ALKFGLISRCQKRATKLPNVSNMQPQASRRRFS----YQELLRAT 384
              +I  I++ ++   +     S       KL   S ++ Q      S    Y EL    
Sbjct: 383 PSAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 385 DGFSA--NNLIGRGSFGSVYK-----ARLQDGMEFAIKVFHFSCSNED-----FRALVLE 432
           +   A   +++   +    +          D   ++    H            FR + L+
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 433 YTTNGSLE-KVLYS------SNYILDILQRLNI----MIDVTSALE-----YLHF--GYS 474
           +     LE K+ +       S  IL+ LQ+L      + D     E      L F     
Sbjct: 500 F---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 475 TPIIHCDLKPHNKLL 489
             +I      +  LL
Sbjct: 557 ENLICS---KYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 52/284 (18%), Positives = 103/284 (36%), Gaps = 65/284 (22%)

Query: 62  SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFI 121
           SI D L+  DN+   +  +L+ +   S    L  L+          P         L  +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESS----LNVLE----------PAEYRKMFDRL-SV 380

Query: 122 WMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP 181
           +    +I           T L+S+ +  + +   + + + KL K   +  +  E   SIP
Sbjct: 381 FPPSAHIP----------TILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 182 NVLCHLAVLFQLDLRG---NKL--SGSIPTCFGNLTALRNL-----------HLDSNELT 225
           ++  +L +  +L+        +    +IP  F +   +              HL + E  
Sbjct: 430 SI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 226 SIPSILWNLKDILYLDF-WSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS 284
                   L  +++LDF +       L  KI       R D +  N  G I  T+Q LK 
Sbjct: 488 E----RMTLFRMVFLDFRF-------LEQKI-------RHDSTAWNASGSILNTLQQLKF 529

Query: 285 -LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSL 327
              ++     + +  +    D L  +E  +L  +  ++++ ++L
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEE-NLICSKYTDLLRIAL 572

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 53/160 (33%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV------------------------------FHFS 420
            +G G++G V  A         A+K+                              F+  
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGH 73

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI---------MIDVTSALEYLHF 471
               + + L LEY + G L       + I      +           ++   + + YLH 
Sbjct: 74  RREGNIQYLFLEYCSGGEL------FDRIEP-DIGMPEPDAQRFFHQLM---AGVVYLH- 122

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
                I H D+KP N LLD+     +SDFG+A +    ++
Sbjct: 123 --GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 83/218 (38%)

Query: 362 NVSNMQPQASRRRFSYQ--ELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV-- 416
            VS      +R R        L          ++G+GSFG V  +  +     +A+K+  
Sbjct: 4   TVSKFDNNGNRDRMKLTDFNFLM---------VLGKGSFGKVMLSERKGTDELYAVKILK 54

Query: 417 ---------------------------F----HFSCSNEDFRALVLEYTTNGSL------ 439
                                      F    H      D    V+EY   G L      
Sbjct: 55  KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ 114

Query: 440 -----EK--VLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN 492
                E   V Y++              ++   L +L    S  II+ DLK  N +LD  
Sbjct: 115 VGRFKEPHAVFYAA--------------EIAIGLFFLQ---SKGIIYRDLKLDNVMLDSE 157

Query: 493 IVAH--LSDFGIAKLLTGEDQSMTQTQTL-AIIGYMAP 527
              H  ++DFG+ K    +      T+T      Y+AP
Sbjct: 158 --GHIKIADFGMCKENIWDGV---TTKTFCGTPDYIAP 190

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 45/186 (24%), Positives = 62/186 (33%), Gaps = 72/186 (38%)

Query: 392 LIGRGSFGSVYKARLQD-GMEFAIKV-----------------------------F---- 417
           +IGRGS+  V   RL+     +A++V                             F    
Sbjct: 59  VIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGL 118

Query: 418 HFSCSNEDFRALVLEYTTNGSL-----------EK--VLYSSNYILDILQRLNIMIDVTS 464
           H     E     V+EY   G L           E+    YS+              +++ 
Sbjct: 119 HSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSA--------------EISL 164

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTL-AI 521
           AL YLH      II+ DLK  N LLD     H  L+D+G+ K           T T    
Sbjct: 165 ALNYLH---ERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKEGLRPGD---TTSTFCGT 216

Query: 522 IGYMAP 527
             Y+AP
Sbjct: 217 PNYIAP 222

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 65/183 (35%)

Query: 392 LIGRGSFGSVYKARLQDGME----FAIKVF------------------------------ 417
           ++G+GSFG V+  +   G +    +A+KV                               
Sbjct: 31  VLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVK 90

Query: 418 -HFSCSNEDFRALVLEYTTNGSL-----EKVLYSSN----YILDILQRLNIMIDVTSALE 467
            H++   E    L+L++   G L     ++V+++      Y+ ++            AL+
Sbjct: 91  LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELA----------LALD 140

Query: 468 YLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQSMTQTQTL-AIIGY 524
           +LH   S  II+ DLKP N LLD+   I   L+DFG++K     ++      +    + Y
Sbjct: 141 HLH---SLGIIYRDLKPENILLDEEGHIK--LTDFGLSKESIDHEKK---AYSFCGTVEY 192

Query: 525 MAP 527
           MAP
Sbjct: 193 MAP 195

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 36/169 (21%), Positives = 54/169 (31%), Gaps = 52/169 (30%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIK-------------VF-----------------HFSCS 422
           I  GS+G+V      +G+  AIK             +                  HF   
Sbjct: 30  ISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHP 89

Query: 423 N-------------EDFRA--LVLEY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSAL 466
           N                    LV E   T+  L +V++    ++        M  +   L
Sbjct: 90  NILGLRDIFVHFEEPAMHKLYLVTELMRTD--LAQVIHDQRIVISPQHIQYFMYHILLGL 147

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
             LH      ++H DL P N LL DN    + DF +A+     D + T 
Sbjct: 148 HVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAR-EDTADANKTH 192

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 53/160 (33%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV------------------------------FHFS 420
            +G G++G V  A         A+K+                              F+  
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGH 73

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNI---------MIDVTSALEYLHF 471
               + + L LEY + G L       + I      +           ++   + + YLH 
Sbjct: 74  RREGNIQYLFLEYCSGGEL------FDRIEP-DIGMPEPDAQRFFHQLM---AGVVYLH- 122

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
                I H D+KP N LLD+     +SDFG+A +    ++
Sbjct: 123 --GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 42/192 (21%)

Query: 361 PNVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHF 419
             +            S      + D +     +G G++G VYKA         AIK    
Sbjct: 10  GTLEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRL 69

Query: 420 SCSNEDF-----R--------------------------ALVLEYTTNGSLEKVLYSSNY 448
               E       R                           L+ EY  N  L+K +   N 
Sbjct: 70  EHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYM-DKNP 127

Query: 449 ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH-----LSDFGIA 503
            + +    + +  + + + + H   S   +H DLKP N LL  +  +      + DFG+A
Sbjct: 128 DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184

Query: 504 KLLTGEDQSMTQ 515
           +      +  T 
Sbjct: 185 RAFGIPIRQFTH 196

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 46/165 (27%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK----VF-----------------HFSCSN------- 423
           IG GS+G V +A    +    AIK    VF                   +  +       
Sbjct: 61  IGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDI 120

Query: 424 ------EDFRA--LVLEY--TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                 E F    +VLE   +     +K+  +  Y+ ++  +  ++ ++   ++Y+H   
Sbjct: 121 VIPKDVEKFDELYVVLEIADS---DFKKLFRTPVYLTELHIKT-LLYNLLVGVKYVH--- 173

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
           S  I+H DLKP N L++ +    + DFG+A+ +   +   +Q   
Sbjct: 174 SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPI 218

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 75/189 (39%)

Query: 392 LIGRGSFGSVYKARLQDGME----FAIKVF------------------------------ 417
           ++G+G +G V++ R   G      FA+KV                               
Sbjct: 24  VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83

Query: 418 ---HFSCSNEDFRALVLEYTTNGSL------EKVL-------YSSNYILDILQRLNIMID 461
               ++        L+LEY + G L      E +        Y +              +
Sbjct: 84  VDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLA--------------E 129

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQSMTQTQTL 519
           ++ AL +LH      II+ DLKP N +L+    +   L+DFG+ K    +      T T 
Sbjct: 130 ISMALGHLH---QKGIIYRDLKPENIMLNHQGHVK--LTDFGLCKESIHDGTV---THTF 181

Query: 520 A-IIGYMAP 527
              I YMAP
Sbjct: 182 CGTIEYMAP 190

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 457 NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL--SDFGIAKLLTGEDQSMT 514
           NIM  + SAL YLH   +  I H D+KP N L   N    +   DFG++K     +    
Sbjct: 172 NIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228

Query: 515 QTQTLAI--IGYMAP 527
              T       ++AP
Sbjct: 229 YGMTTKAGTPYFVAP 243

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 59/165 (35%)

Query: 392 LIGRGSFGSVYKA-RLQDGMEFAIKV---------------------------------- 416
            IG G FG +Y A       + A  V                                  
Sbjct: 44  KIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERK 103

Query: 417 ---------FHFS----CSNEDFRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDV 462
                    F+ S         +R +V+E    G  L+K +   N        L + I +
Sbjct: 104 QLDYLGIPLFYGSGLTEFKGRSYRFMVMERL--GIDLQK-ISGQNGTFKKSTVLQLGIRM 160

Query: 463 TSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAK 504
              LEY+H       +H D+K  N LL   + + V +L+D+G++ 
Sbjct: 161 LDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQV-YLADYGLSY 201

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 54/183 (29%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKV------------F--------HFS------ 420
           +G G+FG VY+ ++            A+K             F         F+      
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 421 ----CSNEDFRALVLEYTTNGSLEKVLYSS------NYILDILQRLNIMIDVTSALEYL- 469
                     R +++E    G L+  L  +         L +L  L++  D+    +YL 
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157

Query: 470 --HFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
             HF      IH D+   N LL       VA + DFG+A+ +            +  + +
Sbjct: 158 ENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 211

Query: 525 MAP 527
           M P
Sbjct: 212 MPP 214

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 47/157 (29%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC-SNEDFRA--------------------- 428
            +G G+FG V        G + A+K+ +     + D                        
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLY 77

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYI-----LDILQRLNIMIDVTSALEYLHFGY 473
                     +V+EY + G L       +YI     ++ ++   +   + SA++Y H   
Sbjct: 78  QVISTPTDFFMVMEYVSGGEL------FDYICKHGRVEEMEARRLFQQILSAVDYCH--- 128

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
              ++H DLKP N LLD ++ A ++DFG++ +++  +
Sbjct: 129 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 47/154 (30%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC-SNEDFRA--------------------- 428
            +G G+FG V   +    G + A+K+ +     + D                        
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLY 82

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYI-----LDILQRLNIMIDVTSALEYLHFGY 473
                     +V+EY + G L       +YI     LD  +   +   + S ++Y H   
Sbjct: 83  QVISTPSDIFMVMEYVSGGEL------FDYICKNGRLDEKESRRLFQQILSGVDYCH--- 133

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
              ++H DLKP N LLD ++ A ++DFG++ +++
Sbjct: 134 RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 167

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 65/301 (21%)

Query: 66  ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNF---SQSLEFIW 122
             SL  + +T+   + S  + +     +K++ +S N +     R +       + LE   
Sbjct: 8   GKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66

Query: 123 MSDCNISGG----------ISEEIGNLTDLISIDLGGNKLNG----SISITLGKLQKLQF 168
            SD                + + +     L ++ L  N         +   L K   L+ 
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 169 LSFRGNEL-------------EGSIPNVLCHLAVLFQLDLRGNKLSG----SIPTCFGNL 211
           L    N L             E ++     +   L  +    N+L           F + 
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 212 TALRNLHLDSNELTS------IPSILWNLKDILYLDFWSNLF----VGPLPSKIGNLKVL 261
             L  + +  N +        +   L   +++  LD   N F       L   + +   L
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSL-QFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
             +  + + LL       +G  ++    S   N               L++L L  N + 
Sbjct: 247 RELGLN-DCLLSA-----RGAAAVVDAFSKLENI-------------GLQTLRLQYNEIE 287

Query: 321 E 321
            
Sbjct: 288 L 288

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 52/163 (31%)

Query: 391 NLIGRGSFGSVYKARLQDG---MEFAIKVFHFSCSNEDFRAL------------------ 429
           ++IG G+FG V KAR++     M+ AIK      S +D R                    
Sbjct: 31  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90

Query: 430 -------------VLEYTTNGSLEKVL---------------YSSNYILDILQRLNIMID 461
                         +EY  +G+L   L                S+   L   Q L+   D
Sbjct: 91  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 150

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           V   ++YL        IH DL   N L+ +N VA ++DFG+++
Sbjct: 151 VARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 48/167 (28%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------------------------- 415
            AT  +     IG G++G+VYKAR    G   A+K                         
Sbjct: 6   MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALL 65

Query: 416 ----------------VFHFSCSNEDFRA-LVLEYTTNGSLEKVLYSSNYI-LDILQRLN 457
                           V   S ++ + +  LV E+     L   L  +    L      +
Sbjct: 66  RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 124

Query: 458 IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
           +M      L++LH   +  I+H DLKP N L+       L+DFG+A+
Sbjct: 125 LMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLAR 168

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 48/153 (31%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA----------------------- 428
           IG+G+F  V  AR +  G E AIK+   +  N                            
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEV 82

Query: 429 --------LVLEYTTNGSLEKVLYSSNYILDILQRLN------IMIDVTSALEYLHFGYS 474
                   L++EY + G +       +Y++    R+           + SA++Y H    
Sbjct: 83  IETEKTLYLIMEYASGGEV------FDYLVA-HGRMKEKEARSKFRQIVSAVQYCH---Q 132

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
             I+H DLK  N LLD ++   ++DFG +   T
Sbjct: 133 KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 165

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 37/158 (23%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDF-----R----------------- 427
             IG G++G VYKAR    G   A+K        E       R                 
Sbjct: 9   EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL 68

Query: 428 ---------ALVLEYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPI 477
                     LV E+     L+K + +S    + +    + +  +   L + H   S  +
Sbjct: 69  DVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRV 124

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           +H DLKP N L++      L+DFG+A+      ++ T 
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH 162

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 54/183 (29%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +G G+FG VY+ ++            A+K     CS +D                     
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138

Query: 430 -------------VLEYTTNGSLEKVLYSS------NYILDILQRLNIMIDVTSALEYL- 469
                        +LE    G L+  L  +         L +L  L++  D+    +YL 
Sbjct: 139 CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 198

Query: 470 --HFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
             HF      IH D+   N LL       VA + DFG+A+ +            +  + +
Sbjct: 199 ENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW 252

Query: 525 MAP 527
           M P
Sbjct: 253 MPP 255

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 60/189 (31%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSN---EDFRA--------------- 428
           +G   FG VYK  L            AIK           E+FR                
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 429 ------------LVLEYTTNGSLEKVL---------------YSSNYILDILQRLNIMID 461
                       ++  Y ++G L + L                +    L+    ++++  
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQ 136

Query: 462 VTSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
           + + +EYL   H       +H DL   N L+ D +   +SD G+ + +   D       +
Sbjct: 137 IAAGMEYLSSHHV------VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNS 190

Query: 519 LAIIGYMAP 527
           L  I +MAP
Sbjct: 191 LLPIRWMAP 199

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 49/180 (27%)

Query: 393 IGRGSFGSVYKARLQD---GMEFAIKVFH---FSCSN----------------------- 423
           +GRG++G VYKA+ +D     ++A+K       S S                        
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFL 88

Query: 424 ---EDFRALVLEYTTNGSLEKVL--------YSSNYILDILQRLNIMIDVTSALEYLHFG 472
              +    L+ +Y  +  L  ++              L      +++  +   + YLH  
Sbjct: 89  SHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH-- 145

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAH----LSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            +  ++H DLKP N L+           ++D G A+L     + +     + +   Y AP
Sbjct: 146 -ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP 204

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 43/166 (25%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQDGMEF-AIK---------------------------- 415
           + +   + +G G++ +VYK + +      A+K                            
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 416 ------VFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYL 469
                 + H     E    LV EY     L++ L     I+++      +  +   L Y 
Sbjct: 62  IVTLHDIIH----TEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYC 116

Query: 470 HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           H      ++H DLKP N L+++     L+DFG+A+  +   ++   
Sbjct: 117 H---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDN 159

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 61/163 (37%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK------------------------------------ 415
           +G G+FG V+ A   +   E  +K                                    
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 416 -----VFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLN------IMIDVTS 464
                +F     N+ F  LV+E   +G L+  L+   +I D   RL+      I   + S
Sbjct: 92  IKVLDIF----ENQGFFQLVMEKHGSG-LD--LF--AFI-DRHPRLDEPLASYIFRQLVS 141

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
           A+ YL       IIH D+K  N ++ ++    L DFG A  L 
Sbjct: 142 AVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLE 181

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 56/165 (33%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSC 421
           L+G+G FG+V+    L D ++ AIKV                                  
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGH 97

Query: 422 SN----EDFRA------LVLEYTTNGSLEKVLYSSNYILDILQRL------NIMIDVTSA 465
                  D+        LVLE       +  L+  +YI +    L           V +A
Sbjct: 98  PGVIRLLDWFETQEGFMLVLERPLPAQ-D--LF--DYITE-KGPLGEGPSRCFFGQVVAA 151

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGE 509
           +++ H   S  ++H D+K  N L+D     A L DFG   LL  E
Sbjct: 152 IQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDE 193

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 57/189 (30%)

Query: 393 IGRGSFGSVYKARLQDGMEF--------AIKVFHFSCSNEDFRAL--------------- 429
           +G G+FG V  A      +         A+K+     + +D   L               
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102

Query: 430 ----------------VLEYTTNGSL---------------EKVLYSSNYILDILQRLNI 458
                           ++EY + G+L                 +       +     ++ 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
              +   +EYL    S   IH DL   N L+ +N V  ++DFG+A+ +   D     T  
Sbjct: 163 TYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNG 219

Query: 519 LAIIGYMAP 527
              + +MAP
Sbjct: 220 RLPVKWMAP 228

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 59/190 (31%)

Query: 391 NLIGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL--------------- 429
             +G G+FG V +A      +       A+K+   +   ++  AL               
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111

Query: 430 ----------------VLEYTTNGSL-------------EKVLYSSNYILDILQRLNIMI 460
                           + EY   G L             +     +N        L+   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSS 171

Query: 461 DVTSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
            V   + +L   +       IH D+   N LL +  VA + DFG+A+ +  +   + +  
Sbjct: 172 QVAQGMAFLASKNC------IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGN 225

Query: 518 TLAIIGYMAP 527
               + +MAP
Sbjct: 226 ARLPVKWMAP 235

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/165 (20%), Positives = 51/165 (30%), Gaps = 58/165 (35%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKV-------- 442
           L+G G FGSVY    + D +  AIK           +  + ++    +  +V        
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVE--------KDRISDWGELPNGTRVPMEVVLLK 101

Query: 443 -----------LY----SSNYILDIL----------------QRLN------IMIDVTSA 465
                      L       +  + IL                  L           V  A
Sbjct: 102 KVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEA 161

Query: 466 LEYLHFGYSTPIIHCDLKPHNKLLDDNIV-AHLSDFGIAKLLTGE 509
           + + H   +  ++H D+K  N L+D N     L DFG   LL   
Sbjct: 162 VRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT 203

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 44/162 (27%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------------------------- 415
                +     IG+G+FG V+KAR  + G + A+K                         
Sbjct: 14  DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 73

Query: 416 ----------VFHFSCSNEDFRA----LVLEYTTNGSLEKVLYSSNYILDILQRLNIMID 461
                     +     S  +       LV ++  +  L  +L +      + +   +M  
Sbjct: 74  KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQM 132

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA 503
           + + L Y+H      I+H D+K  N L+  + V  L+DFG+A
Sbjct: 133 LLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 20/96 (20%)

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELT 225
           Q L    N++    P V   L  L +LDL  N+L+  +P   F  LT L  L L+ N+L 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91

Query: 226 SIPS-ILWNLK-----------------DILYLDFW 243
           SIP     NLK                 DILYL  W
Sbjct: 92  SIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW 127

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 38/132 (28%)

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS----ILWNLKDILYLDFWSNLF 247
            +D  G  L+ S+PT  G  T  + L+L  N++T +       L  L   L LD      
Sbjct: 13  TVDCSGKSLA-SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLT-RLDLD------ 62

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDD 305
                                NN L  +P  +   L  L  LSL  N+L+ SIP  +FD+
Sbjct: 63  ---------------------NNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDN 100

Query: 306 LVSLESLDLSNN 317
           L SL  + L NN
Sbjct: 101 LKSLTHIWLLNN 112

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 57/189 (30%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +G G+FG V +A     ++       A+K+   S    +  AL                 
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90

Query: 430 --------------VLEYTTNGSL-----------------EKVLYSSNYILDILQRLNI 458
                         + EY   G L                   ++      LD+   L+ 
Sbjct: 91  NLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
              V   + +L    S   IH DL   N LL    +  + DFG+A+ +  +   + +   
Sbjct: 151 SYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNA 207

Query: 519 LAIIGYMAP 527
              + +MAP
Sbjct: 208 RLPVKWMAP 216

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 35/96 (36%), Positives = 41/96 (42%), Gaps = 20/96 (20%)

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELT 225
           Q L    N++    P V  HL  L QL    NKL+ +IPT  F  LT L  L L+ N L 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94

Query: 226 SIPS-ILWNLK-----------------DILYLDFW 243
           SIP     NLK                 DI+YL  W
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 38/132 (28%)

Query: 192 QLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS----ILWNLKDILYLDFWSNLF 247
            ++ +  +L+ S+P   G  T  + L L++N++T +       L NL+  LY +      
Sbjct: 16  LVNCQNIRLA-SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ-LYFN------ 65

Query: 248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI-QGLKSLQFLSLGHNRLQGSIPN-SFDD 305
                                +N L  IPT +   L  L  L L  N L+ SIP  +FD+
Sbjct: 66  ---------------------SNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDN 103

Query: 306 LVSLESLDLSNN 317
           L SL  + L NN
Sbjct: 104 LKSLTHIYLYNN 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 132 ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLF 191
           +        +L  +      L  SI+  L KL KL+ L    N + G +  +      L 
Sbjct: 34  LEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91

Query: 192 QLDLRGNKLSG-SIPTCFGNLTALRNLHLDSNELTSIP----SILWNLKDILYLD 241
            L+L GNK+   S       L  L++L L + E+T++     ++   L  + YLD
Sbjct: 92  HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 238 LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG 297
           L LD   +   G L       + L  +    N  L  I   +  L  L+ L L  NR+ G
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTI-NVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 298 SIPNSFDDLVSLESLDLSNNN---LSEIIPLS-LEKLLYLNIL 336
            +    +   +L  L+LS N    LS I PL  LE L  L++ 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 7/119 (5%)

Query: 132 ISEEIG--NLTDLISIDLGGNKLN-GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLA 188
           I  E+     +D+  + L  ++ N G +     + ++L+FLS     L  SI N L  L 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLN 64

Query: 189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLKDILYLDFWSN 245
            L +L+L  N++SG +         L +L+L  N++  + +I  L  L+++  LD ++ 
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 210 NLTALRNLHLDSNELT--SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNL---KVLTRI 264
             + ++ L LD++      +  +    +++ +L   +        + I NL     L ++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 265 DFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEI 322
           + S N + G +    +   +L  L+L  N+++  S       L +L+SLDL N  ++ +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 56  VLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS 115
           +  R  S V EL L ++       E          + L+ L      L       + N  
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGL-----TSIANLP 61

Query: 116 Q--SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISIT-LGKLQKLQFLSFR 172
           +   L+ + +SD  +SGG+        +L  ++L GNK+    +I  L KL+ L+ L   
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 173 GNEL 176
             E+
Sbjct: 122 NCEV 125

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 56/188 (29%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +GRG+FG V +A      +       A+K+     ++ + RAL                 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94

Query: 430 ---------------VLEYTTNGSLEKVLYSS---------------NYILDILQRLNIM 459
                          ++E+   G+L   L S                   L +   +   
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154

Query: 460 IDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
             V   +E+L    S   IH DL   N LL +  V  + DFG+A+ +  +   + +    
Sbjct: 155 FQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR 211

Query: 520 AIIGYMAP 527
             + +MAP
Sbjct: 212 LPLKWMAP 219

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 57/189 (30%)

Query: 393 IGRGSFGSVYKARLQDGMEF--------AIKVFHFSCSNEDFRAL--------------- 429
           +G G+FG V  A      +         A+K+     + +D   L               
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 430 ----------------VLEYTTNGSL---------------EKVLYSSNYILDILQRLNI 458
                           ++EY + G+L                   ++    L     ++ 
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 196

Query: 459 MIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
              V   +EYL    S   IH DL   N L+ ++ V  ++DFG+A+ +   D     T  
Sbjct: 197 AYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 253

Query: 519 LAIIGYMAP 527
              + +MAP
Sbjct: 254 RLPVKWMAP 262

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 46/165 (27%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEF-AIK------------------------ 415
           RA   +     IG G++G V+KAR L++G  F A+K                        
Sbjct: 8   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 67

Query: 416 --------------VFHFSCSNEDFRA-LVLEYTTNGSLEKVLYSSNYI-LDILQRLNIM 459
                         V   S ++ + +  LV E+     L   L       +      ++M
Sbjct: 68  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMM 126

Query: 460 IDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
             +   L++LH   S  ++H DLKP N L+  +    L+DFG+A+
Sbjct: 127 FQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 138 NLTDLISIDLGGNKLN-GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
               +  + L   K N G I     +   L+FLS     L  S+ N L  L  L +L+L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLKDILYLDFWSN 245
            N++ G +      L  L +L+L  N+L  I ++  L  L+ +  LD ++ 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 190 LFQLDLRGNKLS-GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFV 248
           + +L L   K + G I         L  L L +  L S+ S L  L  +  L+   N   
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF 84

Query: 249 GPLPSKIGNLKVLTRIDFSRNNL--LGDIPTTIQGLKSLQFLSLGHNRLQGSIPN----S 302
           G L      L  LT ++ S N L  +  +   ++ L+ L+ L L +  +  ++ +     
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT-NLNDYRESV 142

Query: 303 FDDLVSLESLDLSNNNLSEI 322
           F  L  L  LD  +    E 
Sbjct: 143 FKLLPQLTYLDGYDREDQEA 162

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 32/133 (24%)

Query: 210 NLTALRNLHLDSNELT--SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
              A+R L LD+ +     I  +     ++ +L   +          + NL         
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNL--------- 67

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNN---LSEIIP 324
                         L  L+ L L  NR+ G +    + L +L  L+LS N    +S + P
Sbjct: 68  ------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 325 LS-LEKLLYLNIL 336
           L  LE L  L++ 
Sbjct: 116 LKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 58  GRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQ- 116
            R  + V EL L +        E       +    L+ L +    L       V N  + 
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIE----GLTAEFVNLEFLSLINVGL-----ISVSNLPKL 70

Query: 117 -SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISIT-LGKLQKLQFLSFRGN 174
             L+ + +S+  I GG+      L +L  ++L GNKL    ++  L KL+ L+ L     
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 175 ---ELEGSIPNVLCHLAVLFQLDLR 196
               L     +V   L  L  LD  
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSL 327
             +  G I        +L+FLSL +  L  S+ N    L  L+ L+LS N +   + +  
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLA 91

Query: 328 EKLLYLNILLI 338
           EKL  L  L +
Sbjct: 92  EKLPNLTHLNL 102

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 58/187 (31%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKV-----------F--------HFS------- 420
           +G G+FG V+ A   + +        A+K            F                  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 421 ---CSNEDFRALVLEYTTNGSLEKVLYSS--------------NYILDILQRLNIMIDVT 463
              C+      +V EY  +G L + L S                  L + Q L +   V 
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 168

Query: 464 SALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
           + + YL   HF      +H DL   N L+   +V  + DFG+++ +   D      +T+ 
Sbjct: 169 AGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 222

Query: 521 IIGYMAP 527
            I +M P
Sbjct: 223 PIRWMPP 229

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 63/192 (32%)

Query: 393 IGRGSFGSVYKARLQDGMEF--------AIKVFHFSCSNEDFRAL--------------- 429
           +G G FG V  A      +         A+K+     + +D   L               
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148

Query: 430 ----------------VLEYTTNGSLEKVLYSS---------------NYILDILQRLNI 458
                           ++EY + G+L + L +                   +     ++ 
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 208

Query: 459 MIDVTSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
              +   +EYL           IH DL   N L+ +N V  ++DFG+A+ +   D     
Sbjct: 209 TYQLARGMEYLASQKC------IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKT 262

Query: 516 TQTLAIIGYMAP 527
           T     + +MAP
Sbjct: 263 TNGRLPVKWMAP 274

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 59/188 (31%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKV-----------F--------HFS------- 420
           +G G+FG V+ A   +          A+K            F        +         
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 421 ---CSNEDFRALVLEYTTNGSLEKVL---------------YSSNYILDILQRLNIMIDV 462
              C + D   +V EY  +G L K L                 +   L + Q L+I   +
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 142

Query: 463 TSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTL 519
            S + YL   HF      +H DL   N L+  N++  + DFG+++ +   D       T+
Sbjct: 143 ASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTM 196

Query: 520 AIIGYMAP 527
             I +M P
Sbjct: 197 LPIRWMPP 204

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 48/163 (29%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK----------------------------------VF 417
           +G G++ +VYK      G+  A+K                                  V 
Sbjct: 13  LGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI 72

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI-----LDILQRLNIMIDVTSALEYLHFG 472
           H     E+   LV E+  N  L+K + S         L++         +   L + H  
Sbjct: 73  H----TENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN 127

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
               I+H DLKP N L++      L DFG+A+       + + 
Sbjct: 128 K---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSS 167

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 55/198 (27%)

Query: 363 VSNMQPQASRRR--FSYQELLRA----TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK 415
           +++     S+ R  F  QEL +      + +   + +G G++GSV  A   + G+  A+K
Sbjct: 1   MAHHHHHHSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVK 60

Query: 416 -----------------------------------VFHFSCSNEDFRA--LVLEY-TTNG 437
                                              VF  + S E+F    LV      + 
Sbjct: 61  KLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGAD- 119

Query: 438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL 497
            L  ++       D +Q   ++  +   L+Y+H   S  IIH DLKP N  ++++    +
Sbjct: 120 -LNNIVKCQKLTDDHVQ--FLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKI 173

Query: 498 SDFGIAKLLTGEDQSMTQ 515
            DFG+A+        MT 
Sbjct: 174 LDFGLAR---HTADEMTG 188

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 52/205 (25%)

Query: 354 QKRATKLPNVSNMQPQASRRRFSYQELLRAT----DGFSANNLIGRGSFGSVYKAR-LQD 408
           Q   + +    NM       +F   E+  +T      +     IG G+ G V  A     
Sbjct: 27  QVDVSYIAKHYNMSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVL 86

Query: 409 GMEFAIK-----------------------------------VFHFSCSNEDFRA--LVL 431
               AIK                                   VF    + E+F+   LV+
Sbjct: 87  DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 146

Query: 432 EY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD 490
           E    N  L +V+      LD  +   ++  +   +++LH   S  IIH DLKP N ++ 
Sbjct: 147 ELMDAN--LCQVIQME---LDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVK 198

Query: 491 DNIVAHLSDFGIAKLLTGEDQSMTQ 515
            +    + DFG+A+   G    MT 
Sbjct: 199 SDCTLKILDFGLAR-TAGTSFMMTP 222

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 48/154 (31%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSC-SNEDFRA--------------------- 428
            +G GSFG V  A   +   + A+K          D                        
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLY 75

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYI-----LDILQRLNIMIDVTSALEYLHFGY 473
                     +V+EY   G L       +YI     +   +       +  A+EY H   
Sbjct: 76  DVITTPTDIVMVIEYA-GGEL------FDYIVEKKRMTEDEGRRFFQQIICAIEYCH--- 125

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT 507
              I+H DLKP N LLDDN+   ++DFG++ ++T
Sbjct: 126 RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 159

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 44/164 (26%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK----VF-----------------HFSCSN------- 423
           IGRGS+G VY A         AIK    +F                              
Sbjct: 34  IGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDL 93

Query: 424 ------EDFRA--LVLEY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS 474
                   F    +VLE   ++  L+K+  +  ++ +   +  I+ ++     ++H    
Sbjct: 94  IIPDDLLKFDELYIVLEIADSD--LKKLFKTPIFLTEEHIKT-ILYNLLLGENFIH---E 147

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
           + IIH DLKP N LL+ +    + DFG+A+ +  E  +      
Sbjct: 148 SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDL 191

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 68/197 (34%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKV------------F--------HFS------ 420
           IG G+FG V++AR    + +      A+K+            F         F       
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114

Query: 421 ----CSNEDFRALVLEYTTNGSLEKVLYSS-----------------------NYILDIL 453
               C+      L+ EY   G L + L S                           L   
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 174

Query: 454 QRLNIMIDVTSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
           ++L I   V + + YL    F      +H DL   N L+ +N+V  ++DFG+++ +   D
Sbjct: 175 EQLCIARQVAAGMAYLSERKF------VHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 228

Query: 511 QSMTQTQTLAIIGYMAP 527
                      I +M P
Sbjct: 229 YYKADGNDAIPIRWMPP 245

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 68/197 (34%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +G G FG V KA              A+K+   + S  + R L                 
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90

Query: 430 -------------VLEYTTNGSLEKVLYSS-----------------------NYILDIL 453
                        ++EY   GSL   L  S                          L + 
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMG 150

Query: 454 QRLNIMIDVTSALEYL---HFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED 510
             ++    ++  ++YL           +H DL   N L+ +     +SDFG+++ +  ED
Sbjct: 151 DLISFAWQISQGMQYLAEMKL------VHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204

Query: 511 QSMTQTQTLAIIGYMAP 527
             + ++Q    + +MA 
Sbjct: 205 SYVKRSQGRIPVKWMAI 221

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 46/150 (30%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV------FHFSCSNE-------------------- 424
           +IG+GSFG V KA   +     A+K+      FH   + E                    
Sbjct: 104 VIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIH 163

Query: 425 -----DFRA---LVLEYTTNGSLEKVLYSSNYI---LDILQRLNIMIDVTSALEYLHFGY 473
                 FR    +  E  +  +L +++  + +    L ++++      +   L+ LH   
Sbjct: 164 MLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPLVRK--FAHSILQCLDALH--- 217

Query: 474 STPIIHCDLKPHNKLLDDNIVAH--LSDFG 501
              IIHCDLKP N LL     +   + DFG
Sbjct: 218 KNRIIHCDLKPENILLKQQGRSGIKVIDFG 247

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 62/194 (31%)

Query: 393 IGRGSFGSVYKARLQDGMEF------AIKVFHFSCSNEDFRAL----------------- 429
           +G G+FG V  A      +       A+K+      + +  AL                 
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112

Query: 430 --------------VLEYTTNGSLEKVL----------------------YSSNYILDIL 453
                         + EY   G L   L                           +L   
Sbjct: 113 NLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172

Query: 454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
             L     V   +E+L        +H DL   N L+    V  + DFG+A+ +  +   +
Sbjct: 173 DLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYV 229

Query: 514 TQTQTLAIIGYMAP 527
            +      + +MAP
Sbjct: 230 VRGNARLPVKWMAP 243

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 53/194 (27%)

Query: 366 MQPQASRRR-FSYQELLRAT----DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK---- 415
           M  ++ R   F   E+  +T      +     IG G+ G V  A         AIK    
Sbjct: 1   MGSRSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 60

Query: 416 -------------------------------VFHFSCSNEDFRA--LVLEY-TTNGSLEK 441
                                          VF    S E+F+   +V+E    N  L +
Sbjct: 61  PFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN--LCQ 118

Query: 442 VLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG 501
           V+      LD  +   ++  +   +++LH   S  IIH DLKP N ++  +    + DFG
Sbjct: 119 VIQME---LDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG 172

Query: 502 IAKLLTGEDQSMTQ 515
           +A+   G    MT 
Sbjct: 173 LAR-TAGTSFMMTP 185

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 46/297 (15%), Positives = 97/297 (32%), Gaps = 67/297 (22%)

Query: 66  ELSLSDNYLTSSTPELSFLSSM--SNCKYLKKLDISRNPLD----GFLPRVVGNFSQSLE 119
            L LS N L S       L     +    +  L++S N L       L +++     ++ 
Sbjct: 26  SLDLSLNNLYSI--STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 120 FIWMSDCNISGGISEEIGNL-----TDLISIDLGGNKLNGSISITLGKL-----QKLQFL 169
            + +S   +S   S+E+          +  +DLG N  +   S    +        +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 170 SFRGNELE--------GSIPNVLCHLAVLFQLDLRGNKLS----GSIPTCFGNL-TALRN 216
           + RGN+L           +  +  ++     L+LRGN L+      +     ++  ++ +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVN---SLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 217 LHLDSNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL--- 271
           L L +N L       + +                            +  ++   N L   
Sbjct: 201 LDLSANLLGLKSYAELAYIFSS--------------------IPNHVVSLNLCLNCLHGP 240

Query: 272 -LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS-------LESLDLSNNNLS 320
            L ++      LK LQ + L ++ ++         L +       +  +D +   + 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 26/194 (13%)

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFG--N 210
              +S  L  +  L  L  +G            +L  L   ++    L  S+       +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL---EIISGGLPDSVVEDILGSD 217

Query: 211 LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN 270
           L  L  L L          +     D     F         P+       L  +      
Sbjct: 218 LPNLEKLVLYVG-------VEDYGFDGDMNVFRPLFSKDRFPN-------LKWLGIVDAE 263

Query: 271 LLGDIPTTI---QGLKSLQFLSLGHNRLQGS----IPNSFDDLVSLESLDLSNNNLSEII 323
               +         L  L+ + +    L       + +  D +  L+ +++  N LS+ +
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 324 PLSLEKLLYLNILL 337
              L+K L + I +
Sbjct: 324 KKELQKSLPMKIDV 337

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 58/165 (35%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV---------------------------------- 416
            +G G F +V+ A+ + +    A+K+                                  
Sbjct: 26  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 85

Query: 417 ---------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI---LDILQRLNIMIDVTS 464
                    F+    N     +V E     +L  ++    +    L  +++  I   +  
Sbjct: 86  NHILKLLDHFNHKGPNGVHVVMVFE-VLGENLLALIKKYEHRGIPLIYVKQ--ISKQLLL 142

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH------LSDFGIA 503
            L+Y+H      IIH D+KP N L++            ++D G A
Sbjct: 143 GLDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNA 185

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 65/197 (32%)

Query: 368 PQASRRRFSYQELLRA----TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------- 415
           P  +R  F  QE+ +        +     +G G++G+V  A   + G + AIK       
Sbjct: 4   PPPARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ 63

Query: 416 ----------------------------VFHFSCSNEDFRA--LVLEY-TTNGSLEKVLY 444
                                       VF    + +DF    LV+ +  T+  L K++ 
Sbjct: 64  SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTD--LGKLMK 121

Query: 445 SSNYILDILQRLN------IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS 498
                    ++L       ++  +   L Y+H   +  IIH DLKP N  ++++    + 
Sbjct: 122 H--------EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKIL 170

Query: 499 DFGIAKLLTGEDQSMTQ 515
           DFG+A+     D  MT 
Sbjct: 171 DFGLAR---QADSEMTG 184

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 67/187 (35%)

Query: 393 IGRGSFGSVYKARLQD-GMEFAIK-----------------------------VFHFSCS 422
           +G GSFG V +    + G  FA+K                              F+ +  
Sbjct: 15  LGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFY-TTG 73

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY----LH-------- 470
           +E+ +        N    K    +N+   ++   +    +   +EY    LH        
Sbjct: 74  DEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIR 133

Query: 471 ------------FGY----------STPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLT 507
                       + Y          S  I H D+KP N L++  +    L DFG AK L 
Sbjct: 134 SGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLI 193

Query: 508 GEDQSMT 514
              +   
Sbjct: 194 -PSEPSV 199

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 55/161 (34%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK-------------------------------VFHFS 420
           +GRG +  V++A  + +  +  +K                               +    
Sbjct: 44  LGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDP 103

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSN------YILDILQRLNIMIDVTSALEYLHFGYS 474
            S     ALV E+  N   +++  +        Y+ +IL+          AL+Y H   S
Sbjct: 104 VSRTP--ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILK----------ALDYCH---S 148

Query: 475 TPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMT 514
             I+H D+KPHN ++D ++    L D+G+A+      Q   
Sbjct: 149 MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYN 188

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 66/197 (33%)

Query: 368 PQASRRRFSYQELLRA----TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK------- 415
               ++ F  Q++ +        + +   +G G++GSV  A   + G + AIK       
Sbjct: 3   SLIRKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ 62

Query: 416 ----------------------------VFHFSCSNEDFRA--LVLEY-TTNGSLEKVLY 444
                                       VF  + S  +F    LV+ +  T+  L+K+  
Sbjct: 63  SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTD--LQKI-- 118

Query: 445 SSNYILDILQRLN------IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS 498
                  +  + +      ++  +   L+Y+H   S  ++H DLKP N  ++++    + 
Sbjct: 119 -------MGLKFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKIL 168

Query: 499 DFGIAKLLTGEDQSMTQ 515
           DFG+A+     D  MT 
Sbjct: 169 DFGLAR---HADAEMTG 182

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN 492
            +     E         L +   +     V   +E+L    S   IH DL   N LL + 
Sbjct: 173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEK 229

Query: 493 IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            V  + DFG+A+ +  +   + +      + +MAP
Sbjct: 230 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 264

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 42/305 (13%), Positives = 90/305 (29%), Gaps = 45/305 (14%)

Query: 61  SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPL-DGFLPRVVGNFSQSLE 119
               D   + D +     P +  +SS  +  +L+++ + R  + D  L  +  +F  + +
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVVTDDCLELIAKSFK-NFK 133

Query: 120 FIWMSDC-NIS-GGISEEIGNLTDLISIDLGGNKLNG-------SISITLGKLQKLQFLS 170
            + +S C   S  G++       +L  +DL  + ++            T   L  L    
Sbjct: 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

Query: 171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHL-------DSNE 223
                   ++  ++     L  L L        + T       L  L           + 
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 224 LTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD--------- 274
            + +   L   K++  L  + +     LP+       LT ++ S   +            
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 275 ----------------IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNN 318
                           +       K L+ L +  +      PN       L S+ +    
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373

Query: 319 LSEII 323
           L  ++
Sbjct: 374 LESVL 378

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 63/202 (31%)

Query: 364 SNMQPQASRRRFSYQELLRA----TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK--- 415
            +    A+      + +          ++  + IG G++G V  A    + +  AIK   
Sbjct: 2   HHHHHMAAAAAAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKIS 61

Query: 416 VF-----------------HF-------------SCSNEDFRA--LVLEY-TTNGSLEKV 442
            F                  F             + + E  +   +V +   T+  L K+
Sbjct: 62  PFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETD--LYKL 119

Query: 443 LYSSNYILDILQRLN------IMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH 496
           L +        Q L+       +  +   L+Y+H   S  ++H DLKP N LL+      
Sbjct: 120 LKT--------QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLK 168

Query: 497 LSDFGIAKLLTGEDQS---MTQ 515
           + DFG+A++   +      +T+
Sbjct: 169 ICDFGLARVADPDHDHTGFLTE 190

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 45/342 (13%), Positives = 108/342 (31%), Gaps = 31/342 (9%)

Query: 12  DGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSD 71
              +  +      T         +  +   +   + V D+D + +    +  ++ L L  
Sbjct: 88  MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147

Query: 72  NYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFS------QSLEFIWMSD 125
               ++      LS +++C+ +K L +  +       + +   +      + L F     
Sbjct: 148 CSGFTTD---GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 126 CNIS-GGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
             IS   +     N   L+S+ +G  ++   +         L+         +  +P   
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKY 263

Query: 185 CHLAVLFQLDLRGNKLSG--SIPTCFGNLTALRNLHLDSNELTS--IPSILWNLKDILYL 240
            +L    +L   G    G   +P  F     +R L L    L +    +++    ++  L
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323

Query: 241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP 300
           +  + +    L       K L R+   R      +      +     ++L          
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG------- 376

Query: 301 NSFDDLVSLESLDLSNNNLS----EIIPLSLEKLLYLNILLI 338
                   LE + +  ++++    E I   L+ L    ++L+
Sbjct: 377 -----CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 43/162 (26%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK----VF-----------------HFSC--------- 421
           +G+G++G V+K+   + G   A+K     F                   S          
Sbjct: 17  LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLN 76

Query: 422 --SNEDFRA--LVLEY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
               ++ R   LV +Y  T+  L  V+ ++  IL+ + +  ++  +   ++YLH   S  
Sbjct: 77  VLRADNDRDVYLVFDYMETD--LHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGG 129

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
           ++H D+KP N LL+      ++DFG+++      +       
Sbjct: 130 LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPL 171

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 44/162 (27%)

Query: 393 IGRGSFGSVYKAR-LQDGMEFAIK---VF-----------------HF------------ 419
           +G G++G V  A     G   AIK    F                 HF            
Sbjct: 19  LGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78

Query: 420 -SCSNEDFRA--LVLEY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
              S E+F    ++ E   T+  L +V+  S  +L        +     A++ LH    +
Sbjct: 79  RPDSFENFNEVYIIQELMQTD--LHRVI--STQMLSDDHIQYFIYQTLRAVKVLH---GS 131

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQ 517
            +IH DLKP N L++ N    + DFG+A+++       ++  
Sbjct: 132 NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPT 173

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 47/140 (33%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFR--AL----VLEYTTNG------- 437
            +G G+FG V   + + +   +A+KV     + + +   A     +L+   N        
Sbjct: 42  KMGDGTFGRVLLCQHIDNKKYYAVKVVR---NIKKYTRSAKIEADILKKIQNDDINNNNI 98

Query: 438 ----------------------SLEKVLYSSNYI---LDILQRLNIMIDVTSALEYLHFG 472
                                 SL +++  +NY    ++ ++     I++  AL YL   
Sbjct: 99  VKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKL--YCIEILKALNYLR-- 154

Query: 473 YSTPIIHCDLKPHNKLLDDN 492
               + H DLKP N LLDD 
Sbjct: 155 -KMSLTHTDLKPENILLDDP 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	527
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.97
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.97
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.97
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.96
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.93
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.92
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.91
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.91
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.91
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.91
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.91
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.9
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.9
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.9
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.9
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.9
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.9
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.9
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.9
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.9
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.9
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.9
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.9
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.9
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.9
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.89
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.89
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.89
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.89
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.89
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.89
3niz_A	311	Rhodanese family protein; structural genomics, str	99.89
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.89
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.89
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.89
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.89
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.89
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.89
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.89
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.89
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.89
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.89
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.89
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.88
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.88
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.88
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.88
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.88
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.88
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.88
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.88
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.88
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.88
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.88
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.88
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.88
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.88
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.88
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.88
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.88
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.88
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.88
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.88
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.88
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.88
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.88
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.88
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.88
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.88
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.87
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.87
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.87
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.87
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.87
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.87
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.87
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.87
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.87
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.87
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.87
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.87
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.87
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.87
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.87
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.87
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.87
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.87
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.87
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.87
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.87
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.87
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.87
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.87
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.87
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.87
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.87
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.87
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.87
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.87
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.87
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.86
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.86
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.86
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.86
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.86
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.86
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.86
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.86
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.86
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.86
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.86
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.86
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.86
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.86
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.86
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.86
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.86
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.86
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.86
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.86
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.86
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.86
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.86
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.86
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.86
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.85
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.85
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.85
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.85
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.85
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.85
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.85
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.85
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.85
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.85
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.85
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.85
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.85
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.85
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.85
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.85
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.85
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.85
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.85
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.85
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.85
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.85
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.85
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.85
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.85
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.85
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.85
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.85
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.85
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.85
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.85
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.85
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.85
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.85
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.85
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.85
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.85
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.85
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.85
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.84
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.84
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.84
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.84
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.84
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.84
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.84
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.84
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.84
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.84
3bhy_A	283	Death-associated protein kinase 3; death associate	99.84
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.84
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.84
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.84
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.84
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.84
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.84
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.84
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.84
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.84
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.84
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.84
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.84
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.84
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.84
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.83
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.83
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.83
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.83
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.83
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.83
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.83
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.83
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.83
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.83
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.83
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.83
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.83
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.82
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.82
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.82
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.81
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.81
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.79
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
3uqc_A	286	Probable conserved transmembrane protein; structur	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.71
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.91
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.85
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.71
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.56
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.46
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.27
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.97
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.07
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.86
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.74
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	95.66
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.22
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.91
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	90.96
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	87.36
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	83.45

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-40  Score=368.28  Aligned_cols=325  Identities=31%  Similarity=0.446  Sum_probs=270.5

Q ss_pred             hcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc-------ccceEEcccccccC-CCCCCc--------
Q 035895           20 CYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS-------IVDELSLSDNYLTS-STPELS--------   82 (527)
Q Consensus        20 ~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~-------~l~~L~Ls~N~l~~-~~~~~~--------   82 (527)
                      |..+..++ ++|++++.+|..|.++++|++|++++|.+.+.+|.       .++.|+|++|.+++ .+..+.        
T Consensus       293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            56777777 78888888888888888888888888877655552       36677777777763 222110        


Q ss_pred             -----------ccccCCC--CCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeec
Q 035895           83 -----------FLSSMSN--CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGG  149 (527)
Q Consensus        83 -----------~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  149 (527)
                                 .+..+..  +++|++|++++|++++.+|..+..+. +|+.|++++|.+++..|..+..+++|++|++++
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  451 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL  451 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence                       0112222  67788888888888888888888775 799999999999888888899999999999999


Q ss_pred             CcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-Cc
Q 035895          150 NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IP  228 (527)
Q Consensus       150 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-lp  228 (527)
                      |++++..|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..|+.+++|++|++++|++++ +|
T Consensus       452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            99988888888899999999999999988889899999999999999999998899999999999999999999985 78


Q ss_pred             hhhhCCCCccEEEccCCcccccCCccc-----------------------------------------------------
Q 035895          229 SILWNLKDILYLDFWSNLFVGPLPSKI-----------------------------------------------------  255 (527)
Q Consensus       229 ~~~~~l~~L~~l~l~~n~~~~~~p~~~-----------------------------------------------------  255 (527)
                      ..+..+++|+.|++++|.+.+.+|..+                                                     
T Consensus       532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (768)
T 3rgz_A          532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN  611 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred             HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            888889999999999988887766543                                                     


Q ss_pred             -----------------cCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCc
Q 035895          256 -----------------GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNN  318 (527)
Q Consensus       256 -----------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~  318 (527)
                                       +.++.|++|||++|+++|.+|..|+.+++|+.|+|++|+++|.+|..|+.+++|+.|||++|+
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence                             335678899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccchhhhccCCeeEeeeeeeec
Q 035895          319 LSEIIPLSLEKLLYLNILLIVVVILAL  345 (527)
Q Consensus       319 l~~~~p~~~~~l~~L~~L~~~~~~~~~  345 (527)
                      ++|.+|..+..++.|+.|+++.+.+..
T Consensus       692 l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          692 LDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             ccCcCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999887753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-40  Score=363.01  Aligned_cols=330  Identities=31%  Similarity=0.441  Sum_probs=232.8

Q ss_pred             ccccccchhhhcchhccc-CCCceeecCchhhhcC-CCCCEEEcccccccccccc------ccceEEcccccccC-CCCC
Q 035895           10 QLDGGMTGDVCYRICTID-SQNKLVGIVSITIFNL-STLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTS-STPE   80 (527)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l-~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~-~~~~   80 (527)
                      .+.+..+...+..+..++ ++|++++.+|..+.++ ++|++|+|++|.+.+.+|.      .++.|+|++|.+++ ++. 
T Consensus       258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-  336 (768)
T 3rgz_A          258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM-  336 (768)
T ss_dssp             CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-
T ss_pred             cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-
Confidence            344445555677889999 9999999999888776 9999999999999877664      47899999999984 332 


Q ss_pred             CcccccCCCCCCCCEEEcccCCCCcccChhHhhcccc--------------------------ccEEEcccCccccccch
Q 035895           81 LSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQS--------------------------LEFIWMSDCNISGGISE  134 (527)
Q Consensus        81 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~--------------------------L~~L~Ls~n~l~~~~~~  134 (527)
                          ..+..+++|++|++++|++++.+|..+..+..+                          |+.|++++|.+++.+|.
T Consensus       337 ----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  412 (768)
T 3rgz_A          337 ----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP  412 (768)
T ss_dssp             ----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred             ----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence                125677888888888888877777766655333                          45555555555555566


Q ss_pred             hhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccC
Q 035895          135 EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL  214 (527)
Q Consensus       135 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  214 (527)
                      .+..+++|++|++++|++++..|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|+++++|
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            66666666666666666666666666666666666666666666666666666777777777777766666667777777


Q ss_pred             ceeeCCCCCCCC-CchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhh-------------
Q 035895          215 RNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ-------------  280 (527)
Q Consensus       215 ~~L~L~~N~l~~-lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-------------  280 (527)
                      ++|++++|++++ +|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|+++|.+|..+.             
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            777777777763 666666677777777777777777777777777777777777776665554332             


Q ss_pred             ---------------------------------------------------------cCCCCCEEEcccccceeecCCCC
Q 035895          281 ---------------------------------------------------------GLKSLQFLSLGHNRLQGSIPNSF  303 (527)
Q Consensus       281 ---------------------------------------------------------~l~~L~~L~L~~N~l~~~~p~~~  303 (527)
                                                                               .+++|++|+|++|+++|.+|..|
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                     23556677777777777777777


Q ss_pred             CCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          304 DDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       304 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +.+++|+.|+|++|++++.+|..+..++.|+.|+++.+.+.
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            77777777777777777777777777777777777766654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-37  Score=322.70  Aligned_cols=319  Identities=19%  Similarity=0.202  Sum_probs=252.2

Q ss_pred             cchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc-------cccceEEcccccccCCCCCCcccccCCCCCC
Q 035895           21 YRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS-------SIVDELSLSDNYLTSSTPELSFLSSMSNCKY   92 (527)
Q Consensus        21 ~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~-------~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~   92 (527)
                      ..+..+| ++|+++++.|..|.++++|++|++++|.+.+.++       ..++.|+|++|.++...+.     .|.++++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~  104 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-----AFNGLAN  104 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-----TTTTCTT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-----hccCccc
Confidence            5677788 8889999888899999999999999998764443       2478899999988876443     5788889


Q ss_pred             CCEEEcccCCCCcccChh--HhhccccccEEEcccCccccccchh-hcCCcCCcEEEeecCcccccCcccccCC--CCCC
Q 035895           93 LKKLDISRNPLDGFLPRV--VGNFSQSLEFIWMSDCNISGGISEE-IGNLTDLISIDLGGNKLNGSISITLGKL--QKLQ  167 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~  167 (527)
                      |++|++++|++++..|..  +..+. +|++|+|++|.+++..|.. +..+++|++|++++|++++..+..+..+  .+|+
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            999999999888744443  65554 7999999999998877765 7888999999999999888777776655  4555


Q ss_pred             EEeccCcccccccChh--------hhcCcccCeeeeecccCCCCCCccc-------------------------------
Q 035895          168 FLSFRGNELEGSIPNV--------LCHLAVLFQLDLRGNKLSGSIPTCF-------------------------------  208 (527)
Q Consensus       168 ~L~l~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~~-------------------------------  208 (527)
                      .|++++|.+.+..+..        +..+++|+.|++++|++++..|..+                               
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence            5556555555433222        1234556666666666554333322                               


Q ss_pred             ------cC--CccCceeeCCCCCCCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhh
Q 035895          209 ------GN--LTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI  279 (527)
Q Consensus       209 ------~~--l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  279 (527)
                            ..  .++|++|++++|+++++ |..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..|..|
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence                  11  25799999999999884 6678889999999999999999889999999999999999999988888999


Q ss_pred             hcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeeec
Q 035895          280 QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILAL  345 (527)
Q Consensus       280 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~~  345 (527)
                      .++++|++|++++|++++..|..|..+++|++|++++|+++++++..+..++.|+.|+++.+.+..
T Consensus       344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            999999999999999998889999999999999999999999888888999999999998877754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-37  Score=335.17  Aligned_cols=325  Identities=22%  Similarity=0.254  Sum_probs=269.7

Q ss_pred             Cccccccchhhh---cchhccc-CCCceeecCchhhhcCCCCCEEEcccccc----------------------------
Q 035895            9 RQLDGGMTGDVC---YRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYV----------------------------   56 (527)
Q Consensus         9 ~~~~~~~~~~~~---~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~----------------------------   56 (527)
                      -+-|+...|..|   .++..++ ++|.++|.+|.+|.+|++|++|||++|.+                            
T Consensus        66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l  145 (636)
T 4eco_A           66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY  145 (636)
T ss_dssp             GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred             cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence            355533366667   4788888 89999999999999999999999999943                            


Q ss_pred             --------------------------------------------------cccccc------ccceEEcccccccC----
Q 035895           57 --------------------------------------------------LGRLSS------IVDELSLSDNYLTS----   76 (527)
Q Consensus        57 --------------------------------------------------~~~~~~------~l~~L~Ls~N~l~~----   76 (527)
                                                                        .+ +|.      .++.|+|++|.+++    
T Consensus       146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~  224 (636)
T 4eco_A          146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC  224 (636)
T ss_dssp             HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred             HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccc
Confidence                                                              23 343      37889999999987    


Q ss_pred             --------------CCCCCcccccCC--CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCc-ccc-ccchhhcC
Q 035895           77 --------------STPELSFLSSMS--NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN-ISG-GISEEIGN  138 (527)
Q Consensus        77 --------------~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~  138 (527)
                                    ++.      .+.  ++++|++|+|++|++.+.+|..+..+. +|++|++++|. +++ .+|..++.
T Consensus       225 ~~~~~~~~~~~~~~ip~------~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~  297 (636)
T 4eco_A          225 EAWENENSEYAQQYKTE------DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQA  297 (636)
T ss_dssp             SSCSCTTSHHHHHHTTS------CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHH
T ss_pred             ccccccccchhcccCch------hhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHh
Confidence                          443      456  889999999999999999998888875 79999999998 888 78888877


Q ss_pred             C------cCCcEEEeecCcccccCcc--cccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccC
Q 035895          139 L------TDLISIDLGGNKLNGSISI--TLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGN  210 (527)
Q Consensus       139 l------~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  210 (527)
                      +      ++|++|++++|+++ .+|.  .++.+++|+.|++++|+++|.+| .|..+++|+.|++++|+++ .+|..|..
T Consensus       298 L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~  374 (636)
T 4eco_A          298 LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG  374 (636)
T ss_dssp             HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE
T ss_pred             hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh
Confidence            6      89999999999998 6777  89999999999999999998888 8999999999999999998 67888999


Q ss_pred             Ccc-CceeeCCCCCCCCCchhhhCCC--CccEEEccCCcccccCCcccc-------CCCCCCEEEccCCCCCCCChhhhh
Q 035895          211 LTA-LRNLHLDSNELTSIPSILWNLK--DILYLDFWSNLFVGPLPSKIG-------NLKVLTRIDFSRNNLLGDIPTTIQ  280 (527)
Q Consensus       211 l~~-L~~L~L~~N~l~~lp~~~~~l~--~L~~l~l~~n~~~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~  280 (527)
                      +++ |++|++++|+++.+|..+..+.  +|+.|++++|.+.+..|..+.       .+++|++|++++|++....+..+.
T Consensus       375 l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  454 (636)
T 4eco_A          375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS  454 (636)
T ss_dssp             ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred             hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence            999 9999999999999998776654  899999999999998888888       788999999999999865555567


Q ss_pred             cCCCCCEEEcccccceeecCCCCCCCC-------CCCEEeCCCCcccccCccchh--hhccCCeeEeeeeeeec
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSFDDLV-------SLESLDLSNNNLSEIIPLSLE--KLLYLNILLIVVVILAL  345 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~~~l~-------~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~~~~~~~~~  345 (527)
                      .+++|++|+|++|+++...+..+....       +|+.|++++|+++. +|..+.  .++.|+.|+++.+.+..
T Consensus       455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC
Confidence            789999999999999843333444333       88999999998884 566665  88888888888776643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=316.06  Aligned_cols=308  Identities=20%  Similarity=0.201  Sum_probs=265.8

Q ss_pred             CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccC
Q 035895           28 SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN  101 (527)
Q Consensus        28 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  101 (527)
                      ++++++.++.. +  .++++.|+|++|.+.+..+.      .++.|+|++|.++.+.+.     .|.++++|++|+|++|
T Consensus        19 ~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           19 HRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-----AFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             CSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECCSS
T ss_pred             CCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-----hhhCCccCCEEECCCC
Confidence            34556655442 2  25789999999988765443      478899999988876543     5788999999999999


Q ss_pred             CCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccC
Q 035895          102 PLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP  181 (527)
Q Consensus       102 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  181 (527)
                      +++++.+..|..+. +|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus        91 ~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            99987666676664 79999999999998889999999999999999999998888899999999999999999997777


Q ss_pred             hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-CchhhhCCCCccEEEccCCcccccCCccccCCCC
Q 035895          182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV  260 (527)
Q Consensus       182 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~  260 (527)
                      ..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+ +|.......+|+.|++++|.+.+..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            789999999999999999998888899999999999999987655 7777777779999999999988665578899999


Q ss_pred             CCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeee
Q 035895          261 LTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVV  340 (527)
Q Consensus       261 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~  340 (527)
                      |++|+|++|.+.+..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|+++++.+..|..++.|+.|+++.
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            99999999999988888899999999999999999999999999999999999999999998888889999999999888


Q ss_pred             eeee
Q 035895          341 VILA  344 (527)
Q Consensus       341 ~~~~  344 (527)
                      +.+.
T Consensus       330 N~l~  333 (477)
T 2id5_A          330 NPLA  333 (477)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            7764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.5e-36  Score=325.23  Aligned_cols=324  Identities=21%  Similarity=0.222  Sum_probs=267.5

Q ss_pred             cchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccC
Q 035895           15 MTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSM   87 (527)
Q Consensus        15 ~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~   87 (527)
                      ++.++...+..+| ++|+++++.|.+|.++++|++|+|++|.+.+..|.      .++.|+|++|.++...+.     .|
T Consensus        27 iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~  101 (606)
T 3t6q_A           27 IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-----AL  101 (606)
T ss_dssp             CCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-----TT
T ss_pred             CcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-----hh
Confidence            3444555678888 89999999999999999999999999988766553      478999999999876553     57


Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQ  167 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  167 (527)
                      .++++|++|++++|++++..|..+..+. +|++|++++|.+++...+.+..+++|++|++++|++++..+..++.+++|+
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             cccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            8899999999999999987666676664 799999999999876555556689999999999999988888888999998


Q ss_pred             --EEeccCcccccccChhhhcC---------------------------------------------------cccCeee
Q 035895          168 --FLSFRGNELEGSIPNVLCHL---------------------------------------------------AVLFQLD  194 (527)
Q Consensus       168 --~L~l~~N~l~~~~p~~~~~l---------------------------------------------------~~L~~L~  194 (527)
                        .|++++|.+.+..|..|...                                                   .+|+.|+
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence              88999998887766554321                                                   1677888


Q ss_pred             eecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCC
Q 035895          195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD  274 (527)
Q Consensus       195 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~  274 (527)
                      +++|.+++..+..|+++++|++|++++|+++.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            88888888888888999999999999999999988888888999999999988888888888888899999988888766


Q ss_pred             Chh-hhhcCCCCCEEEcccccceeec--CCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          275 IPT-TIQGLKSLQFLSLGHNRLQGSI--PNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       275 ~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +|. .+..+++|++|++++|++++..  |..+..+++|+.|++++|.+++..|..+..++.|+.|+++.+.+.
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            654 4888888888888888888766  778888888888888888888888888888888888888766553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-36  Score=328.27  Aligned_cols=312  Identities=20%  Similarity=0.214  Sum_probs=266.5

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEccccc-ccc-ccc------------cccceEEcccccccCCCCCCcc
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNY-VLG-RLS------------SIVDELSLSDNYLTSSTPELSF   83 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-~~~-~~~------------~~l~~L~Ls~N~l~~~~~~~~~   83 (527)
                      .+..+..++ ++|++.+.+|..|.++++|++|++++|. +.+ .+|            ..++.|+|++|.++.++..   
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~---  323 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE---  323 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH---
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch---
Confidence            456788888 8899999999999999999999999998 877 555            4688999999999854430   


Q ss_pred             cccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcC-CcEEEeecCcccccCcccccC
Q 035895           84 LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD-LISIDLGGNKLNGSISITLGK  162 (527)
Q Consensus        84 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~  162 (527)
                       ..+.++++|++|++++|+++|.+| .+..+. +|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..
T Consensus       324 -~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~  398 (636)
T 4eco_A          324 -TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA  398 (636)
T ss_dssp             -HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred             -hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence             146788999999999999998888 776664 7999999999998 77888999999 999999999998 56777776


Q ss_pred             CC--CCCEEeccCcccccccChhhh-------cCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhC
Q 035895          163 LQ--KLQFLSFRGNELEGSIPNVLC-------HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWN  233 (527)
Q Consensus       163 l~--~L~~L~l~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~  233 (527)
                      ++  +|+.|++++|.+.+..|..|.       .+++|+.|++++|+++..++..+..+++|++|++++|+++.+|...+.
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence            54  899999999999998888888       788999999999999976666677899999999999999998876544


Q ss_pred             C--------CCccEEEccCCcccccCCcccc--CCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEc------cccccee
Q 035895          234 L--------KDILYLDFWSNLFVGPLPSKIG--NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSL------GHNRLQG  297 (527)
Q Consensus       234 l--------~~L~~l~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~  297 (527)
                      .        ++|+.|++++|.+. .+|..+.  .+++|++|+|++|++++ +|..+..+++|++|++      ++|++.+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence            2        28999999999998 6788887  99999999999999997 8889999999999999      5677888


Q ss_pred             ecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          298 SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       298 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      .+|..|..+++|+.|++++|++ +.+|..+.  +.|+.|+++.+.+
T Consensus       557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred             cChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence            9999999999999999999999 45566555  6889999887755

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.1e-36  Score=313.04  Aligned_cols=298  Identities=19%  Similarity=0.188  Sum_probs=273.5

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCK   91 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~   91 (527)
                      +-..+..+| ++|+++++.+..|.++++|++|+|++|.+.+..+.      .++.|+|++|.++.++..     .|.+++
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~  104 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLS  104 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-----SSTTCT
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-----cccCCC
Confidence            345678888 99999999999999999999999999998776553      478999999999987654     478999


Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      +|++|+|++|++++..|..+..+. +|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            999999999999998888888775 7999999999999999999999999999999999999888888999999999999


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEEccCCccccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      ++|.+.+..+..|..+++|+.|++++|.+.+.+|..+....+|+.|++++|+++.+|. .+..+++|+.|++++|.+.+.
T Consensus       184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence            9999998888899999999999999999888787777777799999999999999985 678899999999999999998


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                      .+..|..+++|++|+|++|++.+..|..|.++++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            889999999999999999999999999999999999999999999988888899999999999999999754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.8e-35  Score=318.20  Aligned_cols=317  Identities=20%  Similarity=0.235  Sum_probs=243.9

Q ss_pred             hcchhccc-CCCceeecCchhhhcCCCCC--EEEcccccccccccc----------------------------------
Q 035895           20 CYRICTID-SQNKLVGIVSITIFNLSTLK--VFDVDNNYVLGRLSS----------------------------------   62 (527)
Q Consensus        20 ~~~~~~~~-s~N~l~~~~~~~~~~l~~L~--~L~Ls~N~~~~~~~~----------------------------------   62 (527)
                      +..+..++ ++|+++++.+..|.++++|+  .|++++|.+.+..+.                                  
T Consensus       152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW  231 (606)
T ss_dssp             CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEE
T ss_pred             CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhee
Confidence            55666666 66677777677777777777  667777665543321                                  


Q ss_pred             -----------------------ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhcccccc
Q 035895           63 -----------------------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE  119 (527)
Q Consensus        63 -----------------------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~  119 (527)
                                             .++.|++++|.++.+++.     .|..+++|++|++++|+++. +|..+..+. +|+
T Consensus       232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~-~L~  304 (606)
T 3t6q_A          232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN-----TFHCFSGLQELDLTATHLSE-LPSGLVGLS-TLK  304 (606)
T ss_dssp             CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT-----TTTTCTTCSEEECTTSCCSC-CCSSCCSCT-TCC
T ss_pred             chhhccccccccChhHhchhhcCceeEEEeecCccCccCHH-----HhccccCCCEEeccCCccCC-CChhhcccc-cCC
Confidence                                   234455666666554432     36778888888888888884 566666654 788


Q ss_pred             EEEcccCccccccchhhcCCcCCcEEEeecCcccccCcc-cccCCCCCCEEeccCccccccc--ChhhhcCcccCeeeee
Q 035895          120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSI--PNVLCHLAVLFQLDLR  196 (527)
Q Consensus       120 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~L~  196 (527)
                      +|++++|.+++..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..  |..+..+++|+.|+++
T Consensus       305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  384 (606)
T 3t6q_A          305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS  384 (606)
T ss_dssp             EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred             EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence            888888888887788888888888888888888754443 4788888888888888887665  6778888888888888


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCCC-c-hhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCC
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSI-P-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD  274 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l-p-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~  274 (527)
                      +|++.+..|..|..+++|++|++++|+++.. | ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            8888888888888888888888888888764 3 3367788888888888888888888888888888888888888762


Q ss_pred             ---ChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          275 ---IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       275 ---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                         .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .|+++.+.+.
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence               33568888888888888888888888888888888888888888888888888888888 8887776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-35  Score=327.35  Aligned_cols=317  Identities=20%  Similarity=0.221  Sum_probs=245.5

Q ss_pred             chhhh---cchhccc-CCCceeecCchhhhcCCCCCEEEc-cccccccc-------------------------------
Q 035895           16 TGDVC---YRICTID-SQNKLVGIVSITIFNLSTLKVFDV-DNNYVLGR-------------------------------   59 (527)
Q Consensus        16 ~~~~~---~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~L-s~N~~~~~-------------------------------   59 (527)
                      .|..|   .++..++ ++|.++|.+|.+|.+|++|+.||| ++|.+.|.                               
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~  394 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY  394 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence            66667   4788888 999999999999999999999999 88865433                               


Q ss_pred             ---------------------------------------------ccc------ccceEEcccccccC------------
Q 035895           60 ---------------------------------------------LSS------IVDELSLSDNYLTS------------   76 (527)
Q Consensus        60 ---------------------------------------------~~~------~l~~L~Ls~N~l~~------------   76 (527)
                                                                   +|.      .++.|+|++|.|++            
T Consensus       395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence                                                         343      36788899988887            


Q ss_pred             ------CCCCCcccccCC--CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCc-ccc-ccchhhcCCc------
Q 035895           77 ------STPELSFLSSMS--NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN-ISG-GISEEIGNLT------  140 (527)
Q Consensus        77 ------~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~------  140 (527)
                            ++.      .+.  ++++|++|+|++|++.+.+|..+..+. +|+.|+|++|+ +++ .+|..+..++      
T Consensus       475 n~~~g~iP~------~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l  547 (876)
T 4ecn_A          475 DYAKQYENE------ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTG  547 (876)
T ss_dssp             HHHHHHTTS------CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred             ccccccCCh------hhhhccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence                  333      344  888899999999988888888888775 79999999997 887 6777766665      


Q ss_pred             -CCcEEEeecCcccccCcc--cccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCcc-Cce
Q 035895          141 -DLISIDLGGNKLNGSISI--TLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTA-LRN  216 (527)
Q Consensus       141 -~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~  216 (527)
                       +|++|+|++|+++ .+|.  .++.+++|+.|++++|+++ .+| .|..+++|+.|+|++|+++ .+|..+.++++ |+.
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence             8899999999888 6666  7888899999999999888 777 7888889999999999888 67778888888 999


Q ss_pred             eeCCCCCCCCCchhhhCCC--CccEEEccCCcccccCCccc---c--CCCCCCEEEccCCCCCCCChhhhhcCCCCCEEE
Q 035895          217 LHLDSNELTSIPSILWNLK--DILYLDFWSNLFVGPLPSKI---G--NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLS  289 (527)
Q Consensus       217 L~L~~N~l~~lp~~~~~l~--~L~~l~l~~n~~~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  289 (527)
                      |++++|+++.+|..+..+.  +|+.|++++|.+.+.+|...   .  .+++|+.|++++|.+....+..+..+++|+.|+
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~  703 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII  703 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence            9999999888887766554  38888888888877655322   2  334788888888888744444455788888888


Q ss_pred             cccccceeecCCC-CCCC-------CCCCEEeCCCCcccccCccchh--hhccCCeeEeeeeeeec
Q 035895          290 LGHNRLQGSIPNS-FDDL-------VSLESLDLSNNNLSEIIPLSLE--KLLYLNILLIVVVILAL  345 (527)
Q Consensus       290 L~~N~l~~~~p~~-~~~l-------~~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~~~~~~~~~  345 (527)
                      |++|+++ .+|.. +...       ++|+.|+|++|+++ .+|..+.  .++.|+.|+++.+.+..
T Consensus       704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence            8888887 44443 3322       27888888888887 4566665  78888888887766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.9e-36  Score=322.49  Aligned_cols=137  Identities=23%  Similarity=0.232  Sum_probs=95.6

Q ss_pred             hhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCC
Q 035895           18 DVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNC   90 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l   90 (527)
                      ++...+..++ ++|+++++.+.+|.++++|++|+|++|.+.+..+.      .++.|+|++|.++...+.     .|.++
T Consensus        29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l  103 (606)
T 3vq2_A           29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-----SFSGL  103 (606)
T ss_dssp             TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-----SSTTC
T ss_pred             CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-----hcCCc
Confidence            3345677777 77888888887888888888888888877665443      367788888887776443     46777


Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCcccc-ccchhhcCCcCCcEEEeecCcccccCcccc
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISG-GISEEIGNLTDLISIDLGGNKLNGSISITL  160 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  160 (527)
                      ++|++|++++|++++..+..+..+. +|++|++++|.+++ .+|..+.++++|++|++++|++++..+..+
T Consensus       104 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          104 TSLENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TTCCEEECTTSCCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccCCEEEccCCccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence            7777777777777766556666654 67777777777765 347777777777777777777665544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-35  Score=320.14  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCK   91 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~   91 (527)
                      .|..+..+| ++|+++++.|.+|.++++|++|+|++|.+.+..|.      .++.|+|++|.++.+++.     .+.+++
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~  128 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF-----PIGQLI  128 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS-----CCTTCT
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc-----ccCCCC
Confidence            356788888 88899999888899999999999999988766553      367888888888776542     356677


Q ss_pred             CCCEEEcccCCCCc-ccChhHhhccccccEEEcccCccccccchhh
Q 035895           92 YLKKLDISRNPLDG-FLPRVVGNFSQSLEFIWMSDCNISGGISEEI  136 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  136 (527)
                      +|++|++++|++++ .+|..+..+. +|++|++++|.+++..+..+
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTT
T ss_pred             CCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhh
Confidence            77777777777765 3466666654 57777777776665554433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-35  Score=311.45  Aligned_cols=314  Identities=22%  Similarity=0.287  Sum_probs=201.9

Q ss_pred             cchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccC
Q 035895           15 MTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSM   87 (527)
Q Consensus        15 ~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~   87 (527)
                      ++.++...+..+| ++|++++++|.+|.++++|++|+|++|.+.+..|.      .++.|+|++|+|+.++..       
T Consensus        15 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------   87 (520)
T 2z7x_B           15 VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-------   87 (520)
T ss_dssp             CCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-------
T ss_pred             ccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-------
Confidence            3333446788888 88888888888888888888888888888766543      467888888888764331       


Q ss_pred             CCCCCCCEEEcccCCCCcc-cChhHhhccccccEEEcccCccccccchhhcCCcCC--cEEEeecCcc--cccCcccccC
Q 035895           88 SNCKYLKKLDISRNPLDGF-LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL--ISIDLGGNKL--NGSISITLGK  162 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~  162 (527)
                       .+++|++|++++|++++. +|..+..+. +|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~  162 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD  162 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred             -ccCCccEEeccCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence             577788888888888763 567777664 67888887777764   234444555  6666666655  3333333332


Q ss_pred             CC------------------------------------------------------------------------------
Q 035895          163 LQ------------------------------------------------------------------------------  164 (527)
Q Consensus       163 l~------------------------------------------------------------------------------  164 (527)
                      +.                                                                              
T Consensus       163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  242 (520)
T 2z7x_B          163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ  242 (520)
T ss_dssp             CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred             cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence            11                                                                              


Q ss_pred             -----CCCEEeccCcccccccChhh-----------------------------------------------------hc
Q 035895          165 -----KLQFLSFRGNELEGSIPNVL-----------------------------------------------------CH  186 (527)
Q Consensus       165 -----~L~~L~l~~N~l~~~~p~~~-----------------------------------------------------~~  186 (527)
                           +|+.|++++|++.+.+|..+                                                     ..
T Consensus       243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  322 (520)
T 2z7x_B          243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK  322 (520)
T ss_dssp             HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred             HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence                 45555555555554444433                                                     45


Q ss_pred             CcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCC---chhhhCCCCccEEEccCCcccccCCc-cccCCCCCC
Q 035895          187 LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI---PSILWNLKDILYLDFWSNLFVGPLPS-KIGNLKVLT  262 (527)
Q Consensus       187 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~l~~L~  262 (527)
                      +++|++|++++|++++..|..++.+++|++|++++|+++++   |..+..+++|++|++++|.+.+.+|. .+..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            56666666666666666666666666677777777766643   34556666667777776666664443 356666677


Q ss_pred             EEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeee
Q 035895          263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVI  342 (527)
Q Consensus       263 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~  342 (527)
                      +|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..++.|+.|+++.+.
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            777777666655554443  56677777777766 555555566777777777777765444446666667766666655


Q ss_pred             e
Q 035895          343 L  343 (527)
Q Consensus       343 ~  343 (527)
                      +
T Consensus       480 ~  480 (520)
T 2z7x_B          480 W  480 (520)
T ss_dssp             B
T ss_pred             C
Confidence            4

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-35  Score=307.86  Aligned_cols=308  Identities=17%  Similarity=0.187  Sum_probs=263.4

Q ss_pred             CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccC-CCCCCcccccCCCCCCCCEEEccc
Q 035895           28 SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTS-STPELSFLSSMSNCKYLKKLDISR  100 (527)
Q Consensus        28 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~-~~~~~~~~~~~~~l~~L~~L~Ls~  100 (527)
                      ++++++.++.  +  .++|++|||++|.+.+..+.      .++.|+|++|.+.. +++     ..|.++++|++|+|++
T Consensus        18 ~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-----~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           18 INRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----NTFRGLSSLIILKLDY   88 (455)
T ss_dssp             CSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-----TTTTTCTTCCEEECTT
T ss_pred             CCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc-----ccccccccCCEEeCCC
Confidence            5666776655  2  27899999999999876553      47899999998863 222     3578999999999999


Q ss_pred             CCCCcccChhHhhccccccEEEcccCccccccchh--hcCCcCCcEEEeecCcccccCccc-ccCCCCCCEEeccCcccc
Q 035895          101 NPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE--IGNLTDLISIDLGGNKLNGSISIT-LGKLQKLQFLSFRGNELE  177 (527)
Q Consensus       101 N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~  177 (527)
                      |++++..|..+..+. +|++|+|++|.+++..+..  +..+++|++|+|++|++++..|.. +..+++|++|++++|.++
T Consensus        89 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999998898888875 7999999999999755554  899999999999999999887766 889999999999999999


Q ss_pred             cccChhhhcC--cccCeeeeecccCCCCCCccc--------cCCccCceeeCCCCCCCC-CchhhhC-------------
Q 035895          178 GSIPNVLCHL--AVLFQLDLRGNKLSGSIPTCF--------GNLTALRNLHLDSNELTS-IPSILWN-------------  233 (527)
Q Consensus       178 ~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~--------~~l~~L~~L~L~~N~l~~-lp~~~~~-------------  233 (527)
                      +..|..+..+  ..|+.|++++|.+.+..+..+        ..+++|++|++++|++++ +|..+..             
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            9888888876  789999999999997665543        367899999999999876 3433321             


Q ss_pred             --------------------------CCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCE
Q 035895          234 --------------------------LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF  287 (527)
Q Consensus       234 --------------------------l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  287 (527)
                                                .++|+.+++++|.+.+..|..++.+++|++|++++|++.+..|..|.++++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence                                      257889999999999989999999999999999999999888889999999999


Q ss_pred             EEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeeec
Q 035895          288 LSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILAL  345 (527)
Q Consensus       288 L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~~  345 (527)
                      |++++|++++..|..|..+++|++|++++|++++..|..+..++.|+.|+++.+.+..
T Consensus       328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            9999999998888999999999999999999999999999999999999998876643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.4e-35  Score=311.20  Aligned_cols=315  Identities=20%  Similarity=0.221  Sum_probs=247.6

Q ss_pred             cchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccC
Q 035895           15 MTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSM   87 (527)
Q Consensus        15 ~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~   87 (527)
                      ++.+....+..+| ++|.++++++.+|.++++|++|+|++|.+.+..+.      .++.|+|++|+|+.++..       
T Consensus        46 ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------  118 (562)
T 3a79_B           46 VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-------  118 (562)
T ss_dssp             CCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-------
T ss_pred             CCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-------
Confidence            4455557788888 88899998888999999999999999988766553      478899999988865432       


Q ss_pred             CCCCCCCEEEcccCCCCcc-cChhHhhccccccEEEcccCccccccchhhcCCcCC--cEEEeecCcc--cccCcccccC
Q 035895           88 SNCKYLKKLDISRNPLDGF-LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL--ISIDLGGNKL--NGSISITLGK  162 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~  162 (527)
                       .+++|++||+++|++++. .|..+..+. +|++|++++|.+++.   .+..+++|  ++|++++|++  ++..|..+..
T Consensus       119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~  193 (562)
T 3a79_B          119 -PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI  193 (562)
T ss_dssp             -CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred             -ccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence             678899999999998874 357777765 799999999888753   34444555  8888888877  5554444443


Q ss_pred             CC------------------------------------------------------------------------------
Q 035895          163 LQ------------------------------------------------------------------------------  164 (527)
Q Consensus       163 l~------------------------------------------------------------------------------  164 (527)
                      +.                                                                              
T Consensus       194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  273 (562)
T 3a79_B          194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF  273 (562)
T ss_dssp             CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence            32                                                                              


Q ss_pred             ---CCCEEeccCcccccccChhh-----------------------------------------------------hcCc
Q 035895          165 ---KLQFLSFRGNELEGSIPNVL-----------------------------------------------------CHLA  188 (527)
Q Consensus       165 ---~L~~L~l~~N~l~~~~p~~~-----------------------------------------------------~~l~  188 (527)
                         +|++|++++|.+++.+|..+                                                     ..++
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~  353 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS  353 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence               67777777777776666544                                                     5678


Q ss_pred             ccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCc---hhhhCCCCccEEEccCCcccccCCc-cccCCCCCCEE
Q 035895          189 VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP---SILWNLKDILYLDFWSNLFVGPLPS-KIGNLKVLTRI  264 (527)
Q Consensus       189 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp---~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L  264 (527)
                      +|++|++++|++++..|..|+++++|++|++++|+++++|   ..+..+++|++|++++|.+.+.+|. .+..+++|++|
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence            8999999999999888889999999999999999999765   4577889999999999999884554 58888999999


Q ss_pred             EccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          265 DFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       265 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..++.|+.++++.+.+.
T Consensus       434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            9999999876665543  68999999999998 56776669999999999999999765555888999999998887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.4e-34  Score=313.00  Aligned_cols=322  Identities=22%  Similarity=0.234  Sum_probs=198.5

Q ss_pred             chhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCC--CCcc--cccCCCC
Q 035895           22 RICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTP--ELSF--LSSMSNC   90 (527)
Q Consensus        22 ~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~--~~~~--~~~~~~l   90 (527)
                      .+..+| ++|+++++.+.+|.++++|++|++++|.+.+..+.      .++.|++++|.......  .++.  ...|..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            366777 77777777777777788888888887776654432      24555555543321100  0000  0134455


Q ss_pred             CCCCEEEcccCCCCcccChhHhhcc---------------------------ccccEEEcccCccccccchhhcCCcCCc
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFS---------------------------QSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ++|++|++++|++++..+..+..+.                           .+|+.|++++|.+++..|..|..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            5566666666665555444444332                           2355555555666666666666666666


Q ss_pred             EEEeecCcccccCc-ccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC--CCCCccccCCccCceeeCC
Q 035895          144 SIDLGGNKLNGSIS-ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS--GSIPTCFGNLTALRNLHLD  220 (527)
Q Consensus       144 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~  220 (527)
                      +|++++|++++.++ ..|.++++|+.|++++|++.+..+..|..+++|+.|++++|.+.  +..|..|.++++|++|+++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            66666666655433 45666666666666666666666666666666666666666665  3456667777777777777


Q ss_pred             CCCCCCCch-hhhCCCCccEEEccCCcccccCC--------ccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcc
Q 035895          221 SNELTSIPS-ILWNLKDILYLDFWSNLFVGPLP--------SKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLG  291 (527)
Q Consensus       221 ~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  291 (527)
                      +|+++.+|. .+..+++|++|++++|.+.+..+        ..+..+++|++|++++|++....+..|.++++|++|+++
T Consensus       489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence            777776654 35566677777777776654321        235666777777777777765444556777777777777


Q ss_pred             cccceeecCCCCCCCCCCCEEeCCCCcccccCccchh-hhccCCeeEeeeeee
Q 035895          292 HNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE-KLLYLNILLIVVVIL  343 (527)
Q Consensus       292 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~~~~~~~  343 (527)
                      +|++++..+..|..+++|+.|++++|++++.+|..+. .++.|+.++++.+.+
T Consensus       569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            7777766566666777777777777777776666665 566666666665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=312.68  Aligned_cols=160  Identities=28%  Similarity=0.298  Sum_probs=126.1

Q ss_pred             hcCcccCeeeeecccCCCCC--CccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCC-ccccCCCCC
Q 035895          185 CHLAVLFQLDLRGNKLSGSI--PTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP-SKIGNLKVL  261 (527)
Q Consensus       185 ~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~L  261 (527)
                      ..+++|+.|++++|++++..  |..+.++++|++|++++|.++++|..+..+++|+.|++++|.+.+..| ..+..+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            35677788888888887554  667788888888888888888877767778888888888888877655 467788888


Q ss_pred             CEEEccCCCCCCCChhhhhcCCCCCEEEcccccce-eecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeee
Q 035895          262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ-GSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVV  340 (527)
Q Consensus       262 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~  340 (527)
                      ++|++++|.+.+..|..|.++++|++|++++|+++ +.+|..|..+++|+.|++++|++++..|..+..++.|+.|+++.
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            88888888888777888888888888888888876 56778888888888888888888887788888888888888777


Q ss_pred             eeee
Q 035895          341 VILA  344 (527)
Q Consensus       341 ~~~~  344 (527)
                      +.+.
T Consensus       504 n~l~  507 (570)
T 2z63_A          504 NQLK  507 (570)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            6553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-34  Score=320.95  Aligned_cols=311  Identities=19%  Similarity=0.209  Sum_probs=246.9

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEccccc-ccc-cccc-------------ccceEEcccccccCCCCCCc
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNY-VLG-RLSS-------------IVDELSLSDNYLTSSTPELS   82 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-~~~-~~~~-------------~l~~L~Ls~N~l~~~~~~~~   82 (527)
                      .+..+..++ ++|++.+.+|..|.+|++|+.|+|++|. +.+ .+|.             .++.|+|++|.++.++..  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~--  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS--  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH--
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh--
Confidence            346788888 8888899899999999999999999997 776 5553             588899999988854430  


Q ss_pred             ccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcC-CcEEEeecCcccccCccccc
Q 035895           83 FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD-LISIDLGGNKLNGSISITLG  161 (527)
Q Consensus        83 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~  161 (527)
                        ..+.++++|++|+|++|+++ .+| .+..+. +|+.|+|++|.++ .+|..+..+++ |++|+|++|+++ .+|..+.
T Consensus       567 --~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~  639 (876)
T 4ecn_A          567 --ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN  639 (876)
T ss_dssp             --HHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred             --hhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence              14678889999999999988 566 666654 7999999999988 77778888888 999999999988 5667776


Q ss_pred             CCCC--CCEEeccCcccccccChhh---h--cCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCC
Q 035895          162 KLQK--LQFLSFRGNELEGSIPNVL---C--HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNL  234 (527)
Q Consensus       162 ~l~~--L~~L~l~~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l  234 (527)
                      .++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|+++..++..+..+++|+.|+|++|+++.+|..++..
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~  719 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP  719 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence            6654  8999999999887665432   2  3447888999999988544445568888999999999998888766543


Q ss_pred             C--------CccEEEccCCcccccCCcccc--CCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccc------ccceee
Q 035895          235 K--------DILYLDFWSNLFVGPLPSKIG--NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH------NRLQGS  298 (527)
Q Consensus       235 ~--------~L~~l~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~  298 (527)
                      .        +|+.|++++|++. .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence            3        8889999999887 6777776  88899999999999886 788888899999998876      777888


Q ss_pred             cCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          299 IPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       299 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +|..|..+++|+.|+|++|++ +.+|..+.  +.|+.|+++.+.+
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence            888888899999999999998 55666554  5788888887665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=312.51  Aligned_cols=135  Identities=24%  Similarity=0.323  Sum_probs=117.0

Q ss_pred             cCCccCceeeCCCCCCCCC---chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh-hhhhcCCC
Q 035895          209 GNLTALRNLHLDSNELTSI---PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP-TTIQGLKS  284 (527)
Q Consensus       209 ~~l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  284 (527)
                      ..+++|++|++++|+++.+   |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..|..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            4678889999999998876   67788899999999999998876554 8899999999999999987766 57889999


Q ss_pred             CCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc-ccCccchhhhccCCeeEeeeeeee
Q 035895          285 LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS-EIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       285 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      |++|++++|++.+..|..|.++++|+.|++++|.++ +.+|..+..++.|+.|+++.+.+.
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence            999999999999888999999999999999999997 578888999999999998876654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-33  Score=310.13  Aligned_cols=322  Identities=21%  Similarity=0.240  Sum_probs=199.8

Q ss_pred             chhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCC
Q 035895           16 TGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMS   88 (527)
Q Consensus        16 ~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~   88 (527)
                      +.++..++..+| ++|.++++++..|.++++|++|+|++|.+.+..+.      .++.|+|++|.++.+++.     +|.
T Consensus        20 p~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~   94 (680)
T 1ziw_A           20 PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-----TFA   94 (680)
T ss_dssp             CSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT-----TTT
T ss_pred             ccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh-----hhc
Confidence            334446777888 88888888888888888888888888887766553      367888888888876543     467


Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCccccc--CCCCC
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLG--KLQKL  166 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L  166 (527)
                      ++++|++|++++|++++..|..+..+. +|++|++++|.+++..|..+..+++|++|++++|++++..+..+.  .+++|
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             cCCCCCEEECCCCccCccChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            788888888888888776666676664 688888888888777777777788888888888877766655443  34667


Q ss_pred             CEEeccCcccccccChhhhcC---------------------------cccCeeeeecccCCCCCCccccCCcc--Ccee
Q 035895          167 QFLSFRGNELEGSIPNVLCHL---------------------------AVLFQLDLRGNKLSGSIPTCFGNLTA--LRNL  217 (527)
Q Consensus       167 ~~L~l~~N~l~~~~p~~~~~l---------------------------~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L  217 (527)
                      +.|++++|.+++..|..|..+                           ++|+.|++++|.+++..|..|.+++.  |++|
T Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L  253 (680)
T 1ziw_A          174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML  253 (680)
T ss_dssp             SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred             cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence            777777776665555444332                           22334444444444444444444432  4444


Q ss_pred             eCCCCCCCCCc-hhhhCCCCccEEEccCCcccccCCc---------------------------------cccCCCCCCE
Q 035895          218 HLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPS---------------------------------KIGNLKVLTR  263 (527)
Q Consensus       218 ~L~~N~l~~lp-~~~~~l~~L~~l~l~~n~~~~~~p~---------------------------------~~~~l~~L~~  263 (527)
                      ++++|+++.++ ..+..+++|++|++++|.+.+..|.                                 .|..+++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            44444444432 2334444444444444444333332                                 3444555666


Q ss_pred             EEccCCCCCCCChhhhhcCCCCCEEEcc----------------------------cccceeecCCCCCCCCCCCEEeCC
Q 035895          264 IDFSRNNLLGDIPTTIQGLKSLQFLSLG----------------------------HNRLQGSIPNSFDDLVSLESLDLS  315 (527)
Q Consensus       264 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~----------------------------~N~l~~~~p~~~~~l~~L~~L~ls  315 (527)
                      |++++|.+.+..|..|.++++|++|+++                            +|++++..|..|..+++|+.|+++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            6666666665555555555555554444                            444555555666666666666666


Q ss_pred             CCcccccCc-cchhhhccCCeeEeeeeee
Q 035895          316 NNNLSEIIP-LSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       316 ~N~l~~~~p-~~~~~l~~L~~L~~~~~~~  343 (527)
                      +|.+++.+| ..+..+..|+.|+++.+.+
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  442 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKY  442 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred             CCcCccccCcccccCcccccEEecCCCCc
Confidence            666665433 4566666666666655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-33  Score=301.85  Aligned_cols=155  Identities=26%  Similarity=0.337  Sum_probs=104.1

Q ss_pred             hcCcccCeeeeecccCCCCCC---ccccCCccCceeeCCCCCCCCCch---hhhCCCCccEEEccCCcccccCCccccCC
Q 035895          185 CHLAVLFQLDLRGNKLSGSIP---TCFGNLTALRNLHLDSNELTSIPS---ILWNLKDILYLDFWSNLFVGPLPSKIGNL  258 (527)
Q Consensus       185 ~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~l~l~~n~~~~~~p~~~~~l  258 (527)
                      ..+++|+.|++++|++++..|   ..++.+++|++|++++|+++++|.   .+..+++|++|++++|++. .+|..+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            467778888888888876553   346777888888888888887753   4677788888888888777 567777777


Q ss_pred             CCCCEEEccCCCCCCCChhhh------------------hcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          259 KVLTRIDFSRNNLLGDIPTTI------------------QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       259 ~~L~~L~Ls~N~l~~~~p~~~------------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      ++|++|++++|.+.+ +|..+                  ..+++|++|++++|+++ .+|. ...+++|+.|++++|+++
T Consensus       410 ~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~  486 (549)
T 2z81_A          410 EKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK  486 (549)
T ss_dssp             TTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred             ccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence            777777777777753 23222                  24556666666666665 3443 345566666666666666


Q ss_pred             ccCccchhhhccCCeeEeeeeee
Q 035895          321 EIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       321 ~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +.+|..+..++.|+.|+++.+.+
T Consensus       487 ~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          487 SVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CcCHHHHhcCcccCEEEecCCCc
Confidence            66666666666666666665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=314.42  Aligned_cols=297  Identities=22%  Similarity=0.229  Sum_probs=177.6

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc-------cccceEEcccccccCCCCCCcccccCCCC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS-------SIVDELSLSDNYLTSSTPELSFLSSMSNC   90 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~-------~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l   90 (527)
                      ....+..+| ++|.++++.+..|.++++|++|||++|...+.++       ..++.|+|++|.++...+.     .|.++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-----~~~~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-----AFQGL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-----SSCSC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-----HccCC
Confidence            334566666 6777777777777777777777777775443332       1356677777776655332     46666


Q ss_pred             CCCCEEEcccCCCCcccChh--HhhccccccEEEcccCccccccc-hhhcCCcCCcEEEeecCcccccCcccccCC--CC
Q 035895           91 KYLKKLDISRNPLDGFLPRV--VGNFSQSLEFIWMSDCNISGGIS-EEIGNLTDLISIDLGGNKLNGSISITLGKL--QK  165 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~  165 (527)
                      ++|++|+|++|.+++..|..  +..+. +|++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..+..+  ++
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~  175 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT  175 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred             cccCEeeCcCCCCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence            77777777777776544433  44443 57777777777665543 456677777777777777766666666655  66


Q ss_pred             CCEEeccCcccccccChhhhcCcc------cCeeeeecccCCCCCCccccC-----------------------------
Q 035895          166 LQFLSFRGNELEGSIPNVLCHLAV------LFQLDLRGNKLSGSIPTCFGN-----------------------------  210 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~p~~~~~-----------------------------  210 (527)
                      |+.|++++|.+.+..|..+..+.+      |+.|++++|.+++..|..+..                             
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            666666666666655555444443      666666666655444433321                             


Q ss_pred             ---------CccCceeeCCCCCCCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhh
Q 035895          211 ---------LTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ  280 (527)
Q Consensus       211 ---------l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  280 (527)
                               .++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+.+..|..|.
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence                     13455556665555553 33445555566666666655555555555566666666666665555555555


Q ss_pred             cCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                      ++++|++|++++|++.+..+..|..+++|+.|++++|.+++
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            56666666666666555555555555666666666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.5e-34  Score=282.23  Aligned_cols=248  Identities=27%  Similarity=0.482  Sum_probs=127.2

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEccc-CCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCC
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISR-NPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL  142 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  142 (527)
                      ++.|+|++|.+++.   ...+..+.++++|++|++++ |.+.+.+|..+..+. +|++|+|++|.+++..|..+..+++|
T Consensus        52 l~~L~L~~~~l~~~---~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           52 VNNLDLSGLNLPKP---YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             EEEEEEECCCCSSC---EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEECCCCCccCC---cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            44555555555430   00112344555555555553 555555555554443 45555555555555555555555555


Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCc-ccCeeeeecccCCCCCCccccCCccCceeeCCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLA-VLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS  221 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  221 (527)
                      ++|++++|++++..|..+..+++|++|++++|++++.+|..+..++ .|+.|++++|++++..|..|..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            5555555555555555555555555555555555555555555554 555555555555555555555554 55555555


Q ss_pred             CCCCC-CchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecC
Q 035895          222 NELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP  300 (527)
Q Consensus       222 N~l~~-lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  300 (527)
                      |++++ +|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|++++.+|..|..+++|++|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            55543 334444455555555555555444333 4445555555555555554555555555555555555555555554


Q ss_pred             CCCCCCCCCCEEeCCCCc
Q 035895          301 NSFDDLVSLESLDLSNNN  318 (527)
Q Consensus       301 ~~~~~l~~L~~L~ls~N~  318 (527)
                      .. ..+++|+.|++++|+
T Consensus       286 ~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSS
T ss_pred             CC-ccccccChHHhcCCC
Confidence            43 445555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.7e-34  Score=282.12  Aligned_cols=249  Identities=26%  Similarity=0.425  Sum_probs=224.1

Q ss_pred             cchhccc-CCCceee--cCchhhhcCCCCCEEEccc-cccccccccccceEEcccccccCCCCCCcccccCCCCCCCCEE
Q 035895           21 YRICTID-SQNKLVG--IVSITIFNLSTLKVFDVDN-NYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKL   96 (527)
Q Consensus        21 ~~~~~~~-s~N~l~~--~~~~~~~~l~~L~~L~Ls~-N~~~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L   96 (527)
                      .++..++ ++|.+++  .+|..|.++++|++|++++ |.+.+.+|                       ..|.++++|++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-----------------------~~l~~l~~L~~L  106 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-----------------------PAIAKLTQLHYL  106 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-----------------------GGGGGCTTCSEE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC-----------------------hhHhcCCCCCEE
Confidence            3566677 7777777  6777777888888877774 65554433                       246778999999


Q ss_pred             EcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCC-CCCEEeccCcc
Q 035895           97 DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQ-KLQFLSFRGNE  175 (527)
Q Consensus        97 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~  175 (527)
                      +|++|++++.+|..+..+. +|++|++++|.+++.+|..+..+++|++|++++|++++..|..+..++ +|+.|++++|+
T Consensus       107 ~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          107 YITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            9999999998999998875 799999999999999999999999999999999999999999999998 99999999999


Q ss_pred             cccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccc
Q 035895          176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKI  255 (527)
Q Consensus       176 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~  255 (527)
                      +++..|..|..+. |+.|++++|++++..|..|..+++|+.|++++|+++..++.+..+++|++|++++|.+.+.+|..+
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence            9999999999998 999999999999999999999999999999999999877778889999999999999999999999


Q ss_pred             cCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccc
Q 035895          256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL  295 (527)
Q Consensus       256 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (527)
                      ..+++|++|++++|++++.+|.. ..+++|+.|++++|+.
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            99999999999999999999886 8899999999999983

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.7e-33  Score=309.85  Aligned_cols=309  Identities=21%  Similarity=0.236  Sum_probs=270.3

Q ss_pred             ccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEccccccc-CCCCCCcccccCCCCCCCCEE
Q 035895           25 TID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLT-SSTPELSFLSSMSNCKYLKKL   96 (527)
Q Consensus        25 ~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~-~~~~~~~~~~~~~~l~~L~~L   96 (527)
                      .+| ++++++.+++    -.++|++|||++|.+.+..+.      .++.|+|++|.+. .+++     ..|.++++|++|
T Consensus         8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~-----~~f~~L~~L~~L   78 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK-----EAFRNLPNLRIL   78 (844)
T ss_dssp             EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT-----TTTSSCTTCCEE
T ss_pred             EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCH-----HHhcCCCCCCEE
Confidence            344 6788888876    458999999999999876553      4789999999543 3323     368999999999


Q ss_pred             EcccCCCCcccChhHhhccccccEEEcccCccccccchh--hcCCcCCcEEEeecCcccccCc-ccccCCCCCCEEeccC
Q 035895           97 DISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEE--IGNLTDLISIDLGGNKLNGSIS-ITLGKLQKLQFLSFRG  173 (527)
Q Consensus        97 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~  173 (527)
                      +|++|++++..|..|..+. +|++|+|++|.+++..|..  +..+++|++|+|++|.+++..+ ..|+.+++|+.|++++
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             ECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            9999999999899998875 7999999999999866655  8999999999999999987654 5799999999999999


Q ss_pred             cccccccChhhhcC--cccCeeeeecccCCCCCCccccCCcc------CceeeCCCCCCCC-CchhhhC-----------
Q 035895          174 NELEGSIPNVLCHL--AVLFQLDLRGNKLSGSIPTCFGNLTA------LRNLHLDSNELTS-IPSILWN-----------  233 (527)
Q Consensus       174 N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~-lp~~~~~-----------  233 (527)
                      |.+++..|..+..+  ++|+.|++++|.+.+..|..++.+++      |+.|++++|.++. +|..+..           
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            99999999999888  89999999999999988888777766      9999999998764 3322211           


Q ss_pred             ---------------------------CCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCC
Q 035895          234 ---------------------------LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQ  286 (527)
Q Consensus       234 ---------------------------l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  286 (527)
                                                 .++|+.|++++|.+.+..|..|..+++|+.|+|++|.+.+..|..|.++++|+
T Consensus       238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  317 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ  317 (844)
T ss_dssp             CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred             cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence                                       25799999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          287 FLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       287 ~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +|+|++|++++..|..|..+++|+.|++++|.++++.+..+..++.|+.|+++.+.+
T Consensus       318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            999999999988899999999999999999999999999999999999999987654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.1e-33  Score=297.75  Aligned_cols=312  Identities=19%  Similarity=0.151  Sum_probs=203.3

Q ss_pred             ccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCccccc
Q 035895           14 GMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSS   86 (527)
Q Consensus        14 ~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~   86 (527)
                      ...+..|.....+| ++|+++++++..+   ++|++|+|++|.+.+..+.      .++.|+|++|.|+++.+.     .
T Consensus        24 ~~~~~~~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~   95 (562)
T 3a79_B           24 SMTPFSNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-----V   95 (562)
T ss_dssp             ---------CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-----T
T ss_pred             cccccccCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-----H
Confidence            34455666667788 8999998665433   8999999999999876543      478999999999987553     5


Q ss_pred             CCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCcccccc-chhhcCCcCCcEEEeecCcccccCcccccCCCC
Q 035895           87 MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGI-SEEIGNLTDLISIDLGGNKLNGSISITLGKLQK  165 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  165 (527)
                      |.++++|++|||++|+++.+ |..  .+ ++|++|++++|.+++.. |..|.++++|++|++++|++++.   .+..+++
T Consensus        96 ~~~l~~L~~L~Ls~N~l~~l-p~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~  168 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQNI-SCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAH  168 (562)
T ss_dssp             TTTCTTCCEEECTTSCCCEE-CSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTT
T ss_pred             hCCCCCCCEEECCCCcCCcc-Ccc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhh
Confidence            88999999999999999964 544  44 58999999999999754 68999999999999999999863   4556666


Q ss_pred             C--CEEeccCccc--ccccChhhhcCc-----------------------------------------------------
Q 035895          166 L--QFLSFRGNEL--EGSIPNVLCHLA-----------------------------------------------------  188 (527)
Q Consensus       166 L--~~L~l~~N~l--~~~~p~~~~~l~-----------------------------------------------------  188 (527)
                      |  +.|++++|.+  ++..|..|..+.                                                     
T Consensus       169 L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             SCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             ceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence            6  9999999998  666665555433                                                     


Q ss_pred             ----------------------------ccCeeeeecccCCCCCCccc-----cCCcc----------------------
Q 035895          189 ----------------------------VLFQLDLRGNKLSGSIPTCF-----GNLTA----------------------  213 (527)
Q Consensus       189 ----------------------------~L~~L~L~~N~l~~~~p~~~-----~~l~~----------------------  213 (527)
                                                  +|++|++++|++++.+|..+     .+++.                      
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~  328 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF  328 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred             CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence                                        67778888888887777665     33332                      


Q ss_pred             ----CceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCC--hhhhhcCCCCCE
Q 035895          214 ----LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI--PTTIQGLKSLQF  287 (527)
Q Consensus       214 ----L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~  287 (527)
                          |+.|++++|.+..++. ...+++|++|++++|.+.+..|..++.+++|++|++++|++.+..  |..|.++++|++
T Consensus       329 ~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          329 AEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             HTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             ccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence                2223333333222110 034455666666666666555555666666666666666655422  344556666666


Q ss_pred             EEcccccceeecC-CCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          288 LSLGHNRLQGSIP-NSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       288 L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      |++++|++++.+| ..|..+++|+.|++++|++++..|..+.  ..|+.|+++.+.+
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l  462 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI  462 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence            6666666655233 3355555555566655555554444332  3455555554433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.1e-33  Score=293.37  Aligned_cols=295  Identities=20%  Similarity=0.217  Sum_probs=233.9

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc---cccceEEcccccccCCCCCCcccccCCCCCCCC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS---SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLK   94 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~---~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~   94 (527)
                      .+.++..++ ++|+++++.|.+|.++++|++|||++|.+....+   ..+++|+|++|.+++.+.    +..|.++++|+
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~----p~~~~~l~~L~  118 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPI----CKEFGNMSQLK  118 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCC----CGGGGGCTTCC
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccccc----hhhhccCCcce
Confidence            356788899 9999999999999999999999999999874322   358899999999987432    23577888888


Q ss_pred             EEEcccCCCCcccChhHhhccccc--cEEEcccCcc--ccccchhhcCCc------------------------------
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSL--EFIWMSDCNI--SGGISEEIGNLT------------------------------  140 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~~~~l~------------------------------  140 (527)
                      +|++++|++++.   .+..+. +|  +.|++++|.+  .+..|..+..+.                              
T Consensus       119 ~L~L~~n~l~~~---~~~~l~-~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  194 (520)
T 2z7x_B          119 FLGLSTTHLEKS---SVLPIA-HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL  194 (520)
T ss_dssp             EEEEEESSCCGG---GGGGGT-TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred             EEEecCcccchh---hccccc-cceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence            888888887652   222222 34  5555555555  333333333321                              


Q ss_pred             -----------------------------------------------------CCcEEEeecCcccccCcccc-------
Q 035895          141 -----------------------------------------------------DLISIDLGGNKLNGSISITL-------  160 (527)
Q Consensus       141 -----------------------------------------------------~L~~L~L~~N~l~~~~~~~~-------  160 (527)
                                                                           +|++|++++|++++.+|..+       
T Consensus       195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~  274 (520)
T 2z7x_B          195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS  274 (520)
T ss_dssp             CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred             ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence                                                                 45555555555554333322       


Q ss_pred             ----------------------------------------------cCCCCCCEEeccCcccccccChhhhcCcccCeee
Q 035895          161 ----------------------------------------------GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD  194 (527)
Q Consensus       161 ----------------------------------------------~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  194 (527)
                                                                    ..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus       275 l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  354 (520)
T 2z7x_B          275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI  354 (520)
T ss_dssp             CCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred             CceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence                                                          6788999999999999988999999999999999


Q ss_pred             eecccCCC--CCCccccCCccCceeeCCCCCCCC-Cchh-hhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCC
Q 035895          195 LRGNKLSG--SIPTCFGNLTALRNLHLDSNELTS-IPSI-LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN  270 (527)
Q Consensus       195 L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~  270 (527)
                      +++|++++  ..|..|+.+++|++|++++|++++ +|.. +..+++|++|++++|.+.+..|..+.  ++|++|++++|+
T Consensus       355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred             ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence            99999997  456789999999999999999998 8875 67789999999999999888877665  789999999999


Q ss_pred             CCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      ++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|+++...+
T Consensus       433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            98 788888899999999999999995444459999999999999999987543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2e-32  Score=275.04  Aligned_cols=304  Identities=21%  Similarity=0.311  Sum_probs=249.9

Q ss_pred             ccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccccCC
Q 035895           14 GMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLSSMS   88 (527)
Q Consensus        14 ~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~~~~   88 (527)
                      -.....+..+..++ ++|.+..+.  .+..+++|++|++++|.+....+    ..++.|+|++|.++.+       +.+.
T Consensus        37 ~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~  107 (347)
T 4fmz_A           37 VVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-------SALQ  107 (347)
T ss_dssp             EECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-------GGGT
T ss_pred             cccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc-------hHHc
Confidence            34445666778888 778887764  38889999999999998765332    2478999999988764       2478


Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCE
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF  168 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  168 (527)
                      .+++|++|++++|++++..+  +..+ ++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CCCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            89999999999999987533  5555 479999999996654444 48899999999999999986544  788999999


Q ss_pred             EeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccc
Q 035895          169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFV  248 (527)
Q Consensus       169 L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~  248 (527)
                      |++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|+++.+|. +..+++|++|++++|.+.
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC
Confidence            9999999985433  8889999999999999986554  8889999999999999999887 888899999999999887


Q ss_pred             ccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchh
Q 035895          249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLE  328 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~  328 (527)
                      +.  +.+..+++|++|++++|.+.+.  +.+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|  +.
T Consensus       257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence            64  5688899999999999999864  468899999999999999998888889999999999999999998777  78


Q ss_pred             hhccCCeeEeeeeee
Q 035895          329 KLLYLNILLIVVVIL  343 (527)
Q Consensus       329 ~l~~L~~L~~~~~~~  343 (527)
                      .++.|+.|+++.+.+
T Consensus       331 ~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          331 SLSKMDSADFANQVI  345 (347)
T ss_dssp             GCTTCSEESSSCC--
T ss_pred             hhhccceeehhhhcc
Confidence            888999888776553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.1e-32  Score=272.06  Aligned_cols=282  Identities=20%  Similarity=0.272  Sum_probs=234.6

Q ss_pred             CCCEEEccccccccc---cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEE
Q 035895           45 TLKVFDVDNNYVLGR---LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFI  121 (527)
Q Consensus        45 ~L~~L~Ls~N~~~~~---~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L  121 (527)
                      +++.+++++|.+...   +++.++.|+|++|.++.+++.     .|.++++|++|++++|++++..|..+..+. +|++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-----DFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEE
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-----HhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEE
Confidence            688899998876532   234678899999998876543     578899999999999999988788887775 79999


Q ss_pred             EcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccc--cccChhhhcCcccCeeeeeccc
Q 035895          122 WMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE--GSIPNVLCHLAVLFQLDLRGNK  199 (527)
Q Consensus       122 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~L~~N~  199 (527)
                      ++++|.++.. |..+.  ++|++|++++|++++..+..|..+++|+.|++++|.++  +..|..|..+ +|+.|++++|+
T Consensus       108 ~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            9999999854 44333  78999999999999877778899999999999999986  3667778888 89999999999


Q ss_pred             CCCCCCccccCCccCceeeCCCCCCCCCc-hhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhh
Q 035895          200 LSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTT  278 (527)
Q Consensus       200 l~~~~p~~~~~l~~L~~L~L~~N~l~~lp-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  278 (527)
                      +++ +|..+.  ++|++|++++|+++.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..
T Consensus       184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence            986 454443  68999999999999876 56788899999999999999888888999999999999999997 68888


Q ss_pred             hhcCCCCCEEEcccccceeecCCCCCCC------CCCCEEeCCCCccc--ccCccchhhhccCCeeEeee
Q 035895          279 IQGLKSLQFLSLGHNRLQGSIPNSFDDL------VSLESLDLSNNNLS--EIIPLSLEKLLYLNILLIVV  340 (527)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~L~~~~  340 (527)
                      +..+++|++|++++|++++..+..|...      ..|+.|++++|++.  ++.|..+..++.|+.++++.
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence            9999999999999999998777777653      67899999999987  67788888899998887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-32  Score=280.04  Aligned_cols=261  Identities=22%  Similarity=0.228  Sum_probs=119.6

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ++.|+|++|.++.+++.     .|..+++|++|++++|++++..|..+..+. +|++|++++|.++..++..|..+++|+
T Consensus        71 L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcEEECCCCcccccChh-----hccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            44445555544443321     244445555555555555544444444432 455555555555443333344455555


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCee-------------------eeecccCCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQL-------------------DLRGNKLSGSI  204 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L-------------------~L~~N~l~~~~  204 (527)
                      +|++++|++++..+..+..+++|+.|++++|.+++.   .+..+++|+.|                   ++++|.+....
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            555555555444444445555555555555554432   12334444444                   44444444321


Q ss_pred             CccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCC
Q 035895          205 PTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS  284 (527)
Q Consensus       205 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  284 (527)
                      ..   ..++|+.|++++|.++.++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ +|..+..+++
T Consensus       222 ~~---~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~  296 (390)
T 3o6n_A          222 GP---VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT  296 (390)
T ss_dssp             CC---CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTT
T ss_pred             cc---ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCC
Confidence            11   1234455555555554432 34444455555555555444444445555555555555554442 3333444445


Q ss_pred             CCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeee
Q 035895          285 LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVI  342 (527)
Q Consensus       285 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~  342 (527)
                      |++|++++|+++ .+|..+..+++|+.|++++|+++...   +..++.|+.|+++.+.
T Consensus       297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             CCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCC
Confidence            555555555544 23333444445555555555544331   3334444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.3e-33  Score=296.16  Aligned_cols=316  Identities=20%  Similarity=0.243  Sum_probs=243.8

Q ss_pred             hhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCK   91 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~   91 (527)
                      +...+..+| ++|+++++.|.+|.++++|++|+|++|.+.+..+.      .++.|+|++|.+++.++.     .|.+++
T Consensus        24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~   98 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-----WFGPLS   98 (549)
T ss_dssp             CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-----HHTTCT
T ss_pred             CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-----HhccCC
Confidence            335788888 88899999888999999999999999988766543      478899999998876542     477889


Q ss_pred             CCCEEEcccCCCCcc-cChhHhhccccccEEEcccCc-cccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEE
Q 035895           92 YLKKLDISRNPLDGF-LPRVVGNFSQSLEFIWMSDCN-ISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFL  169 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  169 (527)
                      +|++|++++|++++. .|..+..+. +|++|++++|. +....+..+..+++|++|++++|++++..|..+..+++|+.|
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            999999999998863 455666664 79999999998 454555788899999999999999998888889999999999


Q ss_pred             eccCcccccccChhhhcCcccCeeeeecccCCCCC--Ccc----------------------------------------
Q 035895          170 SFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI--PTC----------------------------------------  207 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~----------------------------------------  207 (527)
                      ++++|.+....+..+..+++|+.|++++|++++..  |..                                        
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~  257 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE  257 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence            99999886433333467899999999999988631  100                                        


Q ss_pred             ------------------------------------------------ccCCccCceeeCCCCCCCCCchhhh-CCCCcc
Q 035895          208 ------------------------------------------------FGNLTALRNLHLDSNELTSIPSILW-NLKDIL  238 (527)
Q Consensus       208 ------------------------------------------------~~~l~~L~~L~L~~N~l~~lp~~~~-~l~~L~  238 (527)
                                                                      +..+++|+.|++++|+++.+|..++ .+++|+
T Consensus       258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~  337 (549)
T 2z81_A          258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE  337 (549)
T ss_dssp             EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred             cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence                                                            0112357777777888888887764 688899


Q ss_pred             EEEccCCcccccCC---ccccCCCCCCEEEccCCCCCCCCh--hhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEe
Q 035895          239 YLDFWSNLFVGPLP---SKIGNLKVLTRIDFSRNNLLGDIP--TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLD  313 (527)
Q Consensus       239 ~l~l~~n~~~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  313 (527)
                      .|++++|.+.+..|   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus       338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred             EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence            99999998887664   346788889999999998876433  46888899999999999988 6788888888999999


Q ss_pred             CCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          314 LSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       314 ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +++|+++++.....   ..|+.|+++.+.+.
T Consensus       417 Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~  444 (549)
T 2z81_A          417 LSSTGIRVVKTCIP---QTLEVLDVSNNNLD  444 (549)
T ss_dssp             CTTSCCSCCCTTSC---TTCSEEECCSSCCS
T ss_pred             CCCCCcccccchhc---CCceEEECCCCChh
Confidence            99998876443222   46677777766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.6e-32  Score=281.51  Aligned_cols=299  Identities=27%  Similarity=0.376  Sum_probs=203.4

Q ss_pred             hhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccccCCCCCC
Q 035895           18 DVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLSSMSNCKY   92 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~   92 (527)
                      ..|..+..+| ++|.++++++  |.++++|++|++++|.+.+..+    ..++.|+|++|.++..+       .+..+++
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~l~~  135 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-------PLKNLTN  135 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-------GGTTCTT
T ss_pred             hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh-------HHcCCCC
Confidence            3455666677 6777777655  6777777777777776654332    23667777777766542       2456667


Q ss_pred             CCEEEcccCCCCcccCh--------------------hHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcc
Q 035895           93 LKKLDISRNPLDGFLPR--------------------VVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL  152 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~--------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  152 (527)
                      |++|++++|++.+. +.                    .+..+ ++|+.|++++|.++..  ..+..+++|++|++++|.+
T Consensus       136 L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          136 LNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             CSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             CCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            77777777766543 11                    12222 2566666666666543  2356666677777777766


Q ss_pred             cccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhh
Q 035895          153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILW  232 (527)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~  232 (527)
                      ++..+  ++.+++|+.|++++|.+++.  +.+..+++|+.|++++|.+++..|  +..+++|+.|++++|.++.+|. +.
T Consensus       212 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~  284 (466)
T 1o6v_A          212 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LA  284 (466)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GT
T ss_pred             ccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-cc
Confidence            65444  55667777777777776642  356677777777777777776544  6777777788887777777766 66


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEE
Q 035895          233 NLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESL  312 (527)
Q Consensus       233 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  312 (527)
                      .+++|+.|++++|.+.+..|  +..+++|++|++++|++.+..|  +..+++|++|++++|++++.  ..+..+++|+.|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence            77778888888877766443  6777888888888888876555  67778888888888887754  367778888888


Q ss_pred             eCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          313 DLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       313 ~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ++++|++++..|  +..++.|+.|+++.+.+.
T Consensus       359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          359 SAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             eCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            888888887766  777788888877766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-32  Score=297.60  Aligned_cols=134  Identities=23%  Similarity=0.257  Sum_probs=109.2

Q ss_pred             chhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCC
Q 035895           22 RICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLK   94 (527)
Q Consensus        22 ~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~   94 (527)
                      .+..+| ++|+|+++.+.+|.++++|++|||++|.+.+..+.      .++.|+|++|+|+.+++.     .|.++++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-----~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-----GGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-----HhcCCCCCC
Confidence            567788 89999999999999999999999999988765543      378899999999887653     578899999


Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccc-cchhhcCCcCCcEEEeecCcccccCccccc
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG-ISEEIGNLTDLISIDLGGNKLNGSISITLG  161 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  161 (527)
                      +|+|++|+++++.+..|..+. +|++|+|++|.++.. .|..+..+++|++|++++|++++..+..+.
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             EEECCCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            999999999887666677765 799999999998764 577888899999999999988765554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-32  Score=293.98  Aligned_cols=298  Identities=19%  Similarity=0.190  Sum_probs=190.0

Q ss_pred             hhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCCE
Q 035895           23 ICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKK   95 (527)
Q Consensus        23 ~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~   95 (527)
                      +..++ ++|.+..+++..|.++++|++|+|++|.+.+..+.      .++.|+|++|.|+.+++.     .|.++++|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~  127 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTV  127 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCE
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-----HHcCCCCCCE
Confidence            34444 55666666666667777777777777766554432      356677777776665443     3566667777


Q ss_pred             EEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcc
Q 035895           96 LDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE  175 (527)
Q Consensus        96 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  175 (527)
                      |+|++|.++++.+..|..+. +|++|+|++|.+++..|..|..+++|++|++++|.+++..   ++.+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            77777777655444445543 5777777777776666666667777777777777766532   4456666666666666


Q ss_pred             cccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccc
Q 035895          176 LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKI  255 (527)
Q Consensus       176 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~  255 (527)
                      +++.     .....|+.|++++|.+....+..   .++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..|..|
T Consensus       204 l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          204 LSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             CSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            6532     23345666777777666433322   24677777777777664 455666777777777777777767777


Q ss_pred             cCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCe
Q 035895          256 GNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI  335 (527)
Q Consensus       256 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  335 (527)
                      +.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++..   +..++.|+.
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence            777777777777777764 4555666777777777777776 45555666777777777777776543   445556666


Q ss_pred             eEeeeeee
Q 035895          336 LLIVVVIL  343 (527)
Q Consensus       336 L~~~~~~~  343 (527)
                      |+++.+.+
T Consensus       350 L~l~~N~~  357 (597)
T 3oja_B          350 LTLSHNDW  357 (597)
T ss_dssp             EECCSSCE
T ss_pred             EEeeCCCC
Confidence            66666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.9e-31  Score=266.14  Aligned_cols=284  Identities=18%  Similarity=0.241  Sum_probs=212.8

Q ss_pred             CCCCEEEccccccccc---cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccE
Q 035895           44 STLKVFDVDNNYVLGR---LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF  120 (527)
Q Consensus        44 ~~L~~L~Ls~N~~~~~---~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  120 (527)
                      .+++.++++++.+...   ++..++.|+|++|.++.+++.     .|.++++|++|++++|++++..|..+..+. +|++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~  104 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILINNKISKISPGAFAPLV-KLER  104 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCE
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-----hhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCE
Confidence            3577888887766432   334577888888888776542     467788888888888888877777777764 6888


Q ss_pred             EEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCccccc--ccChhhhcCcccCeeeeecc
Q 035895          121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG--SIPNVLCHLAVLFQLDLRGN  198 (527)
Q Consensus       121 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~N  198 (527)
                      |++++|.++.. |..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+..  ..+..|..+++|+.|++++|
T Consensus       105 L~Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          105 LYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             EECCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            88888888743 33332  678888888888887777778888888888888888753  56777888888888888888


Q ss_pred             cCCCCCCccccCCccCceeeCCCCCCCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChh
Q 035895          199 KLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT  277 (527)
Q Consensus       199 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  277 (527)
                      .++. +|..+.  ++|++|++++|+++++ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.
T Consensus       182 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          182 NITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             CCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             cccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence            8875 444333  6788888888888876 566777888888888888888777777888888888888888887 6777


Q ss_pred             hhhcCCCCCEEEcccccceeecCCCCCCC------CCCCEEeCCCCcccc--cCccchhhhccCCeeEeee
Q 035895          278 TIQGLKSLQFLSLGHNRLQGSIPNSFDDL------VSLESLDLSNNNLSE--IIPLSLEKLLYLNILLIVV  340 (527)
Q Consensus       278 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~~~~  340 (527)
                      .+..+++|++|++++|++++..+..|...      +.|+.|++++|++..  +.|..+..+..++.++++.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence            78888888888888888887766666543      677888888888764  5667777777777776553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.9e-31  Score=266.56  Aligned_cols=280  Identities=23%  Similarity=0.346  Sum_probs=241.4

Q ss_pred             hhhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccccCCCCC
Q 035895           17 GDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLSSMSNCK   91 (527)
Q Consensus        17 ~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~   91 (527)
                      -..|..+..++ ++|+++++.+  |.++++|++|++++|.+.....    ..++.|+|++|.++..++       +..++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-------~~~l~  132 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-------LANLT  132 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-------GTTCT
T ss_pred             hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-------hccCC
Confidence            34577899999 8999998876  9999999999999998865311    258999999999987532       67899


Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      +|++|++++|.....++ .+..+. +|++|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|+.|++
T Consensus       133 ~L~~L~l~~n~~~~~~~-~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          133 KMYSLNLGANHNLSDLS-PLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             TCCEEECTTCTTCCCCG-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             ceeEEECCCCCCccccc-chhhCC-CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence            99999999996655444 366654 79999999999986554  8899999999999999986544  889999999999


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccC
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL  251 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~  251 (527)
                      ++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+. 
T Consensus       207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-  280 (347)
T 4fmz_A          207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-  280 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-
T ss_pred             ccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC-
Confidence            9999986544  8899999999999999997554  899999999999999999985 578899999999999998875 


Q ss_pred             CccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       252 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                       +.+..+++|++|++++|.+.+..|..|.++++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence             568899999999999999999999999999999999999999997766  889999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.7e-31  Score=271.27  Aligned_cols=266  Identities=17%  Similarity=0.163  Sum_probs=216.4

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ++.|++++|.++.+++.     .|..+++|++|++++|.+++..+..+..+. +|++|+|++|.+++..|..|..+++|+
T Consensus        47 l~~l~l~~~~l~~l~~~-----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAA-----LLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CSEEEEESCEESEECTH-----HHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ceEEEecCCchhhCChh-----HhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            34455555555544432     256788999999999999998777888775 799999999999999999999999999


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCce-------
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN-------  216 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~-------  216 (527)
                      +|++++|+++...+..|..+++|++|++++|.+++..|..|..+++|+.|++++|++++..   ++.+++|+.       
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence            9999999999777777899999999999999999888889999999999999999998754   334445555       


Q ss_pred             ------------eeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCC
Q 035895          217 ------------LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS  284 (527)
Q Consensus       217 ------------L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  284 (527)
                                  |++++|.++.+|...  .++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..|..+++
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR  273 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred             ccccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence                        455555554444322  35788888888888764  57888999999999999998888889999999


Q ss_pred             CCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          285 LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       285 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      |++|++++|++++ +|..+..+++|+.|++++|++++ +|..+..++.|+.|+++.+.+.
T Consensus       274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccc
Confidence            9999999999985 56677888999999999999985 5666888899999988876653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.7e-31  Score=286.15  Aligned_cols=284  Identities=20%  Similarity=0.205  Sum_probs=251.6

Q ss_pred             hcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhc
Q 035895           41 FNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNF  114 (527)
Q Consensus        41 ~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  114 (527)
                      ..+++++.+++++|.+....+.      .++.|+|++|.|+.+++.     .|..+++|++|+|++|.+++..|..|..+
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            4578999999999988765442      488999999999986653     57899999999999999999888888877


Q ss_pred             cccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeee
Q 035895          115 SQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD  194 (527)
Q Consensus       115 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  194 (527)
                      . +|++|+|++|.+++.++..|..+++|++|+|++|.+++..|..|+.+++|+.|++++|.+++..   +..+++|+.|+
T Consensus       123 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~  198 (597)
T 3oja_B          123 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN  198 (597)
T ss_dssp             T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred             C-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence            5 7999999999999888888899999999999999999999989999999999999999998652   56788999999


Q ss_pred             eecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCC
Q 035895          195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD  274 (527)
Q Consensus       195 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~  274 (527)
                      +++|.+++     +...++|+.|++++|.++.+|..+.  ++|+.|++++|.+.+  +..+..+++|++|+|++|.+.+.
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred             cccCcccc-----ccCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence            99999875     3445689999999999999876543  689999999999987  47899999999999999999999


Q ss_pred             ChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          275 IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       275 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.+++ +|..+..++.|+.|+++.+.+.
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred             CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCC
Confidence            99999999999999999999996 57778889999999999999985 6777899999999999987764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=5e-31  Score=263.07  Aligned_cols=266  Identities=19%  Similarity=0.188  Sum_probs=236.2

Q ss_pred             ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCC
Q 035895           63 IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL  142 (527)
Q Consensus        63 ~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  142 (527)
                      .++.++++++.++.++..+        .+.|++|++++|++++..+..+..+. +|++|++++|.+++..|..|..+++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--------PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--------CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCeEEEecCCCccccCccC--------CCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            4788999999999876543        26899999999999998777887775 79999999999999889999999999


Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCC--CCCccccCCccCceeeCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG--SIPTCFGNLTALRNLHLD  220 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~  220 (527)
                      ++|++++|+++.. |..+.  ++|+.|++++|.+++..+..|..+++|+.|++++|.+..  ..+..|.++++|++|+++
T Consensus       103 ~~L~Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          103 ERLYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CEEECCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            9999999999854 44433  799999999999998888889999999999999999964  778899999999999999


Q ss_pred             CCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecC
Q 035895          221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP  300 (527)
Q Consensus       221 ~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  300 (527)
                      +|.++.+|..+.  ++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|+++ .+|
T Consensus       180 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  256 (330)
T 1xku_A          180 DTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP  256 (330)
T ss_dssp             SSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             CCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence            999999997664  78999999999999998999999999999999999999888889999999999999999998 788


Q ss_pred             CCCCCCCCCCEEeCCCCcccccCccchhhh------ccCCeeEeeeeee
Q 035895          301 NSFDDLVSLESLDLSNNNLSEIIPLSLEKL------LYLNILLIVVVIL  343 (527)
Q Consensus       301 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~~~~~~~  343 (527)
                      ..+..+++|+.|++++|+++++.+..|...      ..+..++++.+.+
T Consensus       257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            899999999999999999999888777543      5566676666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.98  E-value=1.1e-30  Score=273.25  Aligned_cols=305  Identities=24%  Similarity=0.338  Sum_probs=180.1

Q ss_pred             cccccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccc
Q 035895           11 LDGGMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLS   85 (527)
Q Consensus        11 ~~~~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~   85 (527)
                      +.+.+.......+..++ +++.+..++  .+..+++|++|+|++|.+.+..+    ..++.|++++|.++..++      
T Consensus        36 ~~~~i~~~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~------  107 (466)
T 1o6v_A           36 VTDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP------  107 (466)
T ss_dssp             TTSEECHHHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG------
T ss_pred             cccccChhHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh------
Confidence            34445545566778888 778887764  37889999999999999876543    358899999999987532      


Q ss_pred             cCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCC
Q 035895           86 SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK  165 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  165 (527)
                       +.++++|++|++++|++++..+  +..+ ++|++|++++|.+++..  .+..+++|++|+++ |.+.+..  .+..+++
T Consensus       108 -~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~  178 (466)
T 1o6v_A          108 -LANLTNLTGLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTT  178 (466)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTT
T ss_pred             -hcCCCCCCEEECCCCCCCCChH--HcCC-CCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCC
Confidence             6789999999999999998643  6665 47999999999988642  35555555555554 2332221  1444555


Q ss_pred             CCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCC--------------------ccccCCccCceeeCCCCCCC
Q 035895          166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP--------------------TCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------------------~~~~~l~~L~~L~L~~N~l~  225 (527)
                      |+.|++++|.+++.  ..+..+++|+.|++++|.+++..|                    +.+..+++|+.|++++|.++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc
Confidence            55555555554422  224444445555555544443332                    23444455555555555555


Q ss_pred             CCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCC
Q 035895          226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDD  305 (527)
Q Consensus       226 ~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  305 (527)
                      +++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|++.+..|  +..+++|+.|++++|++++..|  +..
T Consensus       257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          257 NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence            4443 4444555555555555444322  4455555555555555544322  4555555555555555554433  445


Q ss_pred             CCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          306 LVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       306 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +++|+.|++++|.+++.  ..+..++.|+.|+++.+.+
T Consensus       330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence            55555555555555543  2445555555555554444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.3e-31  Score=263.12  Aligned_cols=265  Identities=20%  Similarity=0.211  Sum_probs=235.8

Q ss_pred             ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCC
Q 035895           63 IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL  142 (527)
Q Consensus        63 ~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  142 (527)
                      .++.++++++.++.++..+        .++|++|++++|.+++..|..+..+. +|++|++++|.+++..|..|..+++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--------~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--------SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--------CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCCccccCCCC--------CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCC
Confidence            4789999999999876643        26899999999999998888888875 79999999999999999999999999


Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC--CCCCccccCCccCceeeCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS--GSIPTCFGNLTALRNLHLD  220 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~  220 (527)
                      ++|++++|+++.. |..+.  ++|+.|++++|++++..+..|..+++|+.|++++|.++  +..|..|..+ +|+.|+++
T Consensus       105 ~~L~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            9999999999854 44433  89999999999999877788999999999999999996  4778889988 99999999


Q ss_pred             CCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecC
Q 035895          221 SNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP  300 (527)
Q Consensus       221 ~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  300 (527)
                      +|+++.+|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|+++ .+|
T Consensus       181 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  257 (332)
T 2ft3_A          181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP  257 (332)
T ss_dssp             SSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred             CCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence            999999998665  78999999999999988899999999999999999999988889999999999999999998 788


Q ss_pred             CCCCCCCCCCEEeCCCCcccccCccchhhh------ccCCeeEeeeeee
Q 035895          301 NSFDDLVSLESLDLSNNNLSEIIPLSLEKL------LYLNILLIVVVIL  343 (527)
Q Consensus       301 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~~~~~~~  343 (527)
                      ..+..+++|+.|++++|+++++.+..+...      ..++.++++.+.+
T Consensus       258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            889999999999999999999888777654      4566777666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.2e-30  Score=271.39  Aligned_cols=298  Identities=19%  Similarity=0.195  Sum_probs=236.9

Q ss_pred             cchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc---cccceEEcccccccCCCCCCcccccCCCC
Q 035895           15 MTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS---SIVDELSLSDNYLTSSTPELSFLSSMSNC   90 (527)
Q Consensus        15 ~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~---~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l   90 (527)
                      .....+.++..+| ++|.++++ | .|..+++|++|++++|.+.+..-   ..++.|+|++|.+++++        +.++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~l  105 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--------VTPL  105 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--------CTTC
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--------cCCC
Confidence            3444577888888 88999987 3 68999999999999998876421   24789999999998741        5788


Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      ++|++|++++|+++++ |  +..+ ++|++|++++|.+++. +  +..+++|++|++++|+..+..  .+..+++|+.|+
T Consensus       106 ~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            9999999999999874 4  5555 4799999999999875 2  778899999999999655444  478899999999


Q ss_pred             ccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccccc
Q 035895          171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      +++|++++ +|  +..+++|+.|++++|++++.   .++.+++|++|++++|+++++|  +..+++|+.|++++|.+.+.
T Consensus       177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred             CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc
Confidence            99999986 45  78889999999999999875   3888999999999999999988  77889999999999999887


Q ss_pred             CCccccCCC-------CCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC--------CCCCCCCCCEEeCC
Q 035895          251 LPSKIGNLK-------VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN--------SFDDLVSLESLDLS  315 (527)
Q Consensus       251 ~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--------~~~~l~~L~~L~ls  315 (527)
                      .+..+..++       +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.        .+.++++|+.|+++
T Consensus       249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~  326 (457)
T 3bz5_A          249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN  326 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence            655555554       45666667776666665  46778889999998887666654        25566788889999


Q ss_pred             CCcccccCccchhhhccCCeeEeeeeeee
Q 035895          316 NNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       316 ~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      +|+++++   .+..++.|+.|+++.+.+.
T Consensus       327 ~N~l~~l---~l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          327 NTELTEL---DVSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             TCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred             CCccccc---ccccCCcCcEEECCCCCCC
Confidence            9998885   3778888888888776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-31  Score=268.82  Aligned_cols=255  Identities=19%  Similarity=0.229  Sum_probs=214.4

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      +++|+|++|.++.+++.     .|.++++|++|++++|++++..|..+..+. +|++|++++|.+++..+..+..+++|+
T Consensus        54 L~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           54 VKSLDLSNNRITYISNS-----DLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             CCEEECTTSCCCEECTT-----TTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             CcEEECCCCcCcccCHH-----HhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            44555555555544332     477889999999999999998888888775 799999999999987777799999999


Q ss_pred             EEEeecCcccccCc-ccccCCCCCCEEeccCc-ccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC
Q 035895          144 SIDLGGNKLNGSIS-ITLGKLQKLQFLSFRGN-ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS  221 (527)
Q Consensus       144 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  221 (527)
                      +|++++|++++..+ ..+..+++|+.|++++| .+....+..|..+++|+.|++++|++++..|..|..+++|++|++++
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999999996655 57899999999999999 57766778899999999999999999998899999999999999999


Q ss_pred             CCCCCCchhhh-CCCCccEEEccCCcccccCCcccc---CCCCCCEEEccCCCCCC----CChhhhhcCCCCCEEEcccc
Q 035895          222 NELTSIPSILW-NLKDILYLDFWSNLFVGPLPSKIG---NLKVLTRIDFSRNNLLG----DIPTTIQGLKSLQFLSLGHN  293 (527)
Q Consensus       222 N~l~~lp~~~~-~l~~L~~l~l~~n~~~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N  293 (527)
                      |+++.+|..+. .+++|+.|++++|.+.+..+..+.   ....++.++++++.+.+    .+|..+..+++|++|++++|
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            99999887654 588999999999999876655443   46678899999998876    46888999999999999999


Q ss_pred             cceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       294 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      +++...+..|..+++|+.|++++|++.+..|
T Consensus       288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9995444457999999999999999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.4e-30  Score=269.52  Aligned_cols=248  Identities=22%  Similarity=0.223  Sum_probs=204.2

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ...++.+++.++.++..++        ++|++|+|++|++++..|..|..+. +|+.|+|++|.+++..+..|..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--------~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--------SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--------TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCC--------CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCC
Confidence            3467777777777665432        5788899999998888788887765 799999999988888888888899999


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec-ccCCCCCCccccCCccCceeeCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG-NKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      +|+|++|++++..+..|..+++|+.|++++|.++...+..|..+++|+.|++++ |.+....+..|.++++|++|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            999999998887777788889999999999988877777888889999999988 5565555567888899999999999


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCC
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      +++.+|. +..+++|+.|++++|.+.+..|..|..+++|++|++++|++.+..|..|.++++|+.|+|++|++++..+..
T Consensus       207 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             ccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            9888864 667788888888888888888888888888888888888888878888888888888888888888777777


Q ss_pred             CCCCCCCCEEeCCCCcccc
Q 035895          303 FDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~~  321 (527)
                      |..+++|+.|+|++|++.-
T Consensus       286 ~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             STTCTTCCEEECCSSCEEC
T ss_pred             hccccCCCEEEccCCCcCC
Confidence            8888888888888887753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=268.09  Aligned_cols=247  Identities=23%  Similarity=0.237  Sum_probs=202.9

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      ...++.+++.++.++..++        ++++.|+|++|++++..+..|..+. +|+.|+|++|.++.+.+..|.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--------~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--------TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--------TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCC--------CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCC
Confidence            3466777777777665432        5788889999988887777777764 788999999988888888888899999


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec-ccCCCCCCccccCCccCceeeCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG-NKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      +|+|++|++++..+..|..+++|+.|++++|.++...+..|..+++|+.|++++ |.+....+..|.++++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            999999998877777888889999999999988877777888889999999988 4555555567888999999999999


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCC
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      +++.+|. +..+++|+.|++++|.+.+..|..|..+++|++|++++|++.+..|..|.++++|++|+|++|++++..+..
T Consensus       196 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            9988874 667788888888888888887888888888888888888888877888888888888888888888777777


Q ss_pred             CCCCCCCCEEeCCCCccc
Q 035895          303 FDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~  320 (527)
                      |..+++|+.|+|++|++.
T Consensus       275 ~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEcCCCCcc
Confidence            888888888888888875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=6.3e-30  Score=277.25  Aligned_cols=332  Identities=23%  Similarity=0.236  Sum_probs=261.0

Q ss_pred             cCCCccccccchhhhcchhccc-CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCC
Q 035895            6 LNNRQLDGGMTGDVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSST   78 (527)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~   78 (527)
                      |+.+.+..+.+. .+.+++.+| ++|+|+++++.+|.+|++|++|+|++|.+.+..+.      .++.|+|++|+|++++
T Consensus        62 N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           62 NPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             SCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            333444443332 367899999 99999999999999999999999999998765543      4789999999999876


Q ss_pred             CCCcccccCCCCCCCCEEEcccCCCCcc-cChhHhhccccccEEEcccCccccccchhhcCCc-----------------
Q 035895           79 PELSFLSSMSNCKYLKKLDISRNPLDGF-LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLT-----------------  140 (527)
Q Consensus        79 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-----------------  140 (527)
                      +.     .|+++++|++|++++|++++. .|..+..+. .|+.|++++|.+++..+..+..+.                 
T Consensus       141 ~~-----~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          141 NF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             TC-----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             hh-----hhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            53     478899999999999999764 466666664 799999999988766554443222                 


Q ss_pred             --------------------------------------------------------------------------------
Q 035895          141 --------------------------------------------------------------------------------  140 (527)
Q Consensus       141 --------------------------------------------------------------------------------  140 (527)
                                                                                                      
T Consensus       215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~  294 (635)
T 4g8a_A          215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY  294 (635)
T ss_dssp             EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred             ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence                                                                                            


Q ss_pred             ----------------------------------CCcEEEeecCcccccCc-------------------ccccCCCCCC
Q 035895          141 ----------------------------------DLISIDLGGNKLNGSIS-------------------ITLGKLQKLQ  167 (527)
Q Consensus       141 ----------------------------------~L~~L~L~~N~l~~~~~-------------------~~~~~l~~L~  167 (527)
                                                        .|+.|++.+|.+....+                   .....+++|+
T Consensus       295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~  374 (635)
T 4g8a_A          295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE  374 (635)
T ss_dssp             EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred             ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence                                              12233333333221111                   1122456778


Q ss_pred             EEeccCcccccc-------------------------cChhhhcCcccCeeeeecccCCCCCC-ccccCCccCceeeCCC
Q 035895          168 FLSFRGNELEGS-------------------------IPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDS  221 (527)
Q Consensus       168 ~L~l~~N~l~~~-------------------------~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~  221 (527)
                      .|+++.|.+...                         .+..+..+++|+.++++.|......+ ..|..+++++.++++.
T Consensus       375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~  454 (635)
T 4g8a_A          375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  454 (635)
T ss_dssp             EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred             cchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            888888776421                         23346677889999999888766544 5689999999999999


Q ss_pred             CCCCCC-chhhhCCCCccEEEccCCccc-ccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeec
Q 035895          222 NELTSI-PSILWNLKDILYLDFWSNLFV-GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSI  299 (527)
Q Consensus       222 N~l~~l-p~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  299 (527)
                      |.+..+ |..+..++.++.|++++|... +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..
T Consensus       455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence            999986 456677899999999999854 567889999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCEEeCCCCcccccCccchhhh-ccCCeeEeeeeeee
Q 035895          300 PNSFDDLVSLESLDLSNNNLSEIIPLSLEKL-LYLNILLIVVVILA  344 (527)
Q Consensus       300 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l-~~L~~L~~~~~~~~  344 (527)
                      |..|..+++|++|||++|++++++|..+..+ .+|+.|+++.+.+.
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9999999999999999999999999999988 68999999887764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=261.89  Aligned_cols=141  Identities=28%  Similarity=0.464  Sum_probs=114.1

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCccceeEEEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNEDFRALVL  431 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~~~~~lv~  431 (527)
                      ...++|++.+.||+|+||+||+|+++.  .||||+++..                              +..++..++||
T Consensus        33 i~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVm  110 (307)
T 3omv_A           33 IEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT  110 (307)
T ss_dssp             CCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEE
T ss_pred             EcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEE
Confidence            345678889999999999999999764  6999987421                              11235578999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |||+||+|.+++...+..+++.++..|+.|||.||+|||   +++||||||||+|||+++++.+||+|||+|+.......
T Consensus       111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred             EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence            999999999999877777999999999999999999999   89999999999999999999999999999997654333


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ....+..+||+.||||
T Consensus       188 ~~~~~~~~GT~~ymAP  203 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAP  203 (307)
T ss_dssp             ------CCCCTTSCCH
T ss_pred             ceeecccccCCCccCH
Confidence            2233456799999998

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.97  E-value=1.4e-31  Score=260.95  Aligned_cols=140  Identities=32%  Similarity=0.520  Sum_probs=120.1

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++..                                ...+++..++|
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35799999999999999999985 5799999999852                                12345677899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||+||+|.+++.+.+ .++..++..|+.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.+....
T Consensus       111 mEy~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~  186 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES  186 (311)
T ss_dssp             ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred             EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence            99999999999997653 5788899999999999999999   9999999999999999999999999999999875443


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      ........+||+.||||
T Consensus       187 ~~~~~~~~~GTp~YmAP  203 (311)
T 4aw0_A          187 KQARANSFVGTAQYVSP  203 (311)
T ss_dssp             TCCCBCCCCSCGGGCCH
T ss_pred             CcccccCcccCcccCCH
Confidence            33333456899999998

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.1e-30  Score=258.13  Aligned_cols=225  Identities=20%  Similarity=0.278  Sum_probs=140.5

Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      +.++.|+|++|.++. +|..+..+. +|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~-lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-FPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSS-CCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchh-cChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            456666666666663 344444443 5666666666666 55556666666666666666666 4455566666666666


Q ss_pred             ccCcccccccChhhhc---------CcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEE
Q 035895          171 FRGNELEGSIPNVLCH---------LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLD  241 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~  241 (527)
                      +++|++.+.+|..+..         +++|++|++++|+++ .+|..++.+++|++|++++|+++++|..+..+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            6666555555554433         666666666666666 455666666666666666666666666666666666666


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          242 FWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       242 l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      +++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666655443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=4.5e-30  Score=253.32  Aligned_cols=248  Identities=23%  Similarity=0.286  Sum_probs=190.5

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccc--cchhhcCCcCCc
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG--ISEEIGNLTDLI  143 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~  143 (527)
                      .++.+++.++.++..+        .++|++|++++|+++.+.+..+..+. +|++|+|++|.++..  .+..+..+++|+
T Consensus        11 ~l~c~~~~l~~ip~~~--------~~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI--------PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             EEECCSSCCSSCCSCC--------CTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             EEEcCCCCcccCCCCC--------CCCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccC
Confidence            4555666666554432        14677777777777754444455543 677777777777633  256666777788


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccC-hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      +|++++|.+++ ++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence            88888887774 44557778888888888888775544 56777888888888888887777777888888888888888


Q ss_pred             CCCC--CchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecC
Q 035895          223 ELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIP  300 (527)
Q Consensus       223 ~l~~--lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  300 (527)
                      .+++  +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..|
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            8775  67777778888888888888887778889999999999999999998878889999999999999999999999


Q ss_pred             CCCCCCC-CCCEEeCCCCcccccC
Q 035895          301 NSFDDLV-SLESLDLSNNNLSEII  323 (527)
Q Consensus       301 ~~~~~l~-~L~~L~ls~N~l~~~~  323 (527)
                      ..+..++ +|+.|++++|+++...
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCEECSG
T ss_pred             HHHHhhhccCCEEEccCCCeeccc
Confidence            9999985 9999999999998653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.6e-30  Score=254.51  Aligned_cols=223  Identities=20%  Similarity=0.277  Sum_probs=209.0

Q ss_pred             ccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeee
Q 035895          116 QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL  195 (527)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L  195 (527)
                      ..++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..|..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            47999999999998 66777888999999999999999 77888999999999999999999 78999999999999999


Q ss_pred             ecccCCCCCCccccC---------CccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEc
Q 035895          196 RGNKLSGSIPTCFGN---------LTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDF  266 (527)
Q Consensus       196 ~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~L  266 (527)
                      ++|.+.+.+|..+..         +++|++|++++|+++.+|..+..+++|++|++++|.+.+ +|..++.+++|++|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence            999999899987765         999999999999999999999999999999999999985 6778999999999999


Q ss_pred             cCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeee
Q 035895          267 SRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVI  342 (527)
Q Consensus       267 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~  342 (527)
                      ++|++.+.+|..|.++++|++|++++|++.+.+|..|..+++|+.|++++|++.+.+|..+..++.++.+.+....
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988766443

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.97  E-value=3.3e-31  Score=258.82  Aligned_cols=140  Identities=28%  Similarity=0.460  Sum_probs=115.5

Q ss_pred             CCccccceeccCCceEEEEEEcc------CCcEEEEEEEee-----------------------------ccCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF-----------------------------SCSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~-----------------------------~~~~~~~~~l  429 (527)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.                             .|.+++..++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            46888899999999999999863      478899999742                             2445667899


Q ss_pred             EEEeccCCcHHHHHHhcC------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          430 VLEYTTNGSLEKVLYSSN------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                      |||||++|+|.++++..+            ..++|.++..|+.|||+||+|||   +++||||||||+|||+++++.+||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence            999999999999997642            35899999999999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+|+...............||++||||
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAP  199 (299)
T 4asz_A          170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  199 (299)
T ss_dssp             CCCSCHHHHTGGGCEEETTTEEECGGGCCH
T ss_pred             CCcccceecCCCCceeecCceecChhhcCH
Confidence            999999976543322222335689999998

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=6e-31  Score=258.07  Aligned_cols=140  Identities=24%  Similarity=0.410  Sum_probs=116.6

Q ss_pred             CCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~~~~  428 (527)
                      +++++.+.||+|+||+||+|++.      +++.||||+++.                              .|..++..+
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            44677899999999999999862      568899999742                              234456678


Q ss_pred             EEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC
Q 035895          429 LVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI  493 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~  493 (527)
                      +|||||++|+|.++|....               ..++|.++..|+.|||+||+|||   +++||||||||+|||+++++
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~  182 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL  182 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence            9999999999999996432               35889999999999999999999   99999999999999999999


Q ss_pred             cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+||+|||+|+.+.........+...||++||||
T Consensus       183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAP  216 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAP  216 (308)
T ss_dssp             CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCH
T ss_pred             CEEECCcccceeccCCCceeEecccccCCcccCH
Confidence            9999999999977544333333456789999998

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.97  E-value=9e-31  Score=259.26  Aligned_cols=140  Identities=27%  Similarity=0.438  Sum_probs=109.2

Q ss_pred             CCccccceeccCCceEEEEEEcc------CCcEEEEEEEee-----------------------------ccCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF-----------------------------SCSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~-----------------------------~~~~~~~~~l  429 (527)
                      ++|.+.+.||+|+||+||+|+++      +++.||||+++.                             .|.+++..++
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            45778899999999999999864      578999999742                             2455667899


Q ss_pred             EEEeccCCcHHHHHHhcC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          430 VLEYTTNGSLEKVLYSSN--------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                      |||||++|+|.++++..+              ..++|.+++.|+.|||.||+|||   +++||||||||+|||+++++.+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence            999999999999997542              34889999999999999999999   8999999999999999999999


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|||+|+.+.........+...||+.||||
T Consensus       198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAP  229 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  229 (329)
T ss_dssp             EECCCC----------------CCCCGGGCCH
T ss_pred             EEcccccceeccCCCcceecCcccccccccCh
Confidence            99999999977544333334456789999998

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.97  E-value=6.9e-31  Score=260.40  Aligned_cols=140  Identities=26%  Similarity=0.442  Sum_probs=112.7

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ..+.|++.+.||+|+||+||+|+. .+|+.||||++...                               +.+++..++|
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            457899999999999999999986 57999999998531                               2344577899


Q ss_pred             EEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          431 LEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+||+|.+++...+ ..+++.+...|+.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.+...
T Consensus       102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  178 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST  178 (350)
T ss_dssp             EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred             EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence            99999999999997544 45688888999999999999999   999999999999999999999999999999976432


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .  ...+..+||+.||||
T Consensus       179 ~--~~~~~~~GT~~YmAP  194 (350)
T 4b9d_A          179 V--ELARACIGTPYYLSP  194 (350)
T ss_dssp             H--HHHHHHHSCCTTCCH
T ss_pred             c--ccccccCCCccccCH
Confidence            1  122345799999998

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.97  E-value=1.8e-30  Score=256.29  Aligned_cols=141  Identities=28%  Similarity=0.392  Sum_probs=115.6

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee------------------------ccCccceeEEEEEeccCC
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF------------------------SCSNEDFRALVLEYTTNG  437 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~------------------------~~~~~~~~~lv~ey~~~g  437 (527)
                      ..+.|+..++||+|+||+||+|+. .+|+.||||+++.                        .+.+++..++|||||+||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  135 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG  135 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            345688889999999999999986 5799999999853                        123456778999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCCCc---c
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQS---M  513 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~~~---~  513 (527)
                      +|.+++...+ .+++.++..|+.||+.||+|||   +++||||||||+|||++.++ ++||+|||+|+.+......   .
T Consensus       136 ~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~  211 (336)
T 4g3f_A          136 SLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLL  211 (336)
T ss_dssp             BHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------
T ss_pred             cHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccccee
Confidence            9999997654 5899999999999999999999   99999999999999999887 6999999999987543211   1


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      .....+||+.||||
T Consensus       212 ~~~~~~GT~~YmAP  225 (336)
T 4g3f_A          212 TGDYIPGTETHMAP  225 (336)
T ss_dssp             --CCCCCCGGGCCH
T ss_pred             cCCccccCccccCH
Confidence            22235799999998

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.97  E-value=2e-30  Score=256.71  Aligned_cols=136  Identities=26%  Similarity=0.339  Sum_probs=117.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++...                             +..++..++|||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4599999999999999999986 57999999998531                             23456778999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +||+|.+++.+.  .+++.++..|+.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+.+.....  .
T Consensus       154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~  226 (346)
T 4fih_A          154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R  226 (346)
T ss_dssp             TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--C
T ss_pred             CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--c
Confidence            999999999753  5789999999999999999999   99999999999999999999999999999998754322  2


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .+..+||++||||
T Consensus       227 ~~~~~GTp~YmAP  239 (346)
T 4fih_A          227 RKSLVGTPYWMAP  239 (346)
T ss_dssp             BCCCCSCGGGCCH
T ss_pred             ccccccCcCcCCH
Confidence            2346899999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=7.5e-29  Score=257.64  Aligned_cols=255  Identities=29%  Similarity=0.392  Sum_probs=161.1

Q ss_pred             cchhccc-CCCceeecCchhhhcCCCCCEEEcccccccc--ccccccceEEcccccccCCCCCCcccccCCCCCCCCEEE
Q 035895           21 YRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLG--RLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLD   97 (527)
Q Consensus        21 ~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~--~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~   97 (527)
                      ..+..++ ++|+++++++    .+++|+.|++++|.+.+  ..+..++.|++++|.+++++       .+.++++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-------~~~~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-------ELQNSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-------CCTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-------ccCCCCCCCEEE
Confidence            3555666 6666666432    23667777777777654  23345777777777776533       367788888888


Q ss_pred             cccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccc
Q 035895           98 ISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE  177 (527)
Q Consensus        98 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  177 (527)
                      +++|++++ +|..+    .+|++|++++|.+++ +| .+..+++|++|++++|++++. |..   .++|+.|++++|.++
T Consensus       160 l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE  228 (454)
T ss_dssp             CCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS
T ss_pred             CCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC
Confidence            88888876 44432    368888888888876 44 578888888888888888753 322   257888888888887


Q ss_pred             cccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccc--cCCccc
Q 035895          178 GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG--PLPSKI  255 (527)
Q Consensus       178 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~--~~p~~~  255 (527)
                       .+|. +..+++|+.|++++|++++ +|..   +++|+.|++++|+++++|..   .++|+.|++++|.+.+  .+|   
T Consensus       229 -~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~---  296 (454)
T 1jl5_A          229 -ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELP---  296 (454)
T ss_dssp             -SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCC---
T ss_pred             -cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcC---
Confidence             5563 7788888888888888875 3432   36788888888888877753   3567777777777665  222   


Q ss_pred             cCCCCCCEEEccCCCCCCCChhhhhcC-CCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          256 GNLKVLTRIDFSRNNLLGDIPTTIQGL-KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       256 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                         ++|++|++++|++.+ ++    .+ ++|++|++++|++++ +|..   +++|+.|++++|++++
T Consensus       297 ---~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~  351 (454)
T 1jl5_A          297 ---PNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE  351 (454)
T ss_dssp             ---TTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             ---CcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence               334444444444432 11    11 244555555555543 3322   2444555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=4.8e-29  Score=259.29  Aligned_cols=285  Identities=20%  Similarity=0.183  Sum_probs=236.7

Q ss_pred             CceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCc
Q 035895           30 NKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDG  105 (527)
Q Consensus        30 N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  105 (527)
                      ....+..+..+.++++|++|++++|.+.+...    ..++.|+|++|.+++++        +..+++|++|++++|++++
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSC
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCce
Confidence            34566677789999999999999999876421    24889999999998752        5788999999999999998


Q ss_pred             ccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhh
Q 035895          106 FLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC  185 (527)
Q Consensus       106 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~  185 (527)
                      . |  +..+. +|++|++++|.+++. |  +..+++|++|++++|++++.   .++.+++|+.|++++|...+.+  .+.
T Consensus       100 ~-~--~~~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~  167 (457)
T 3bz5_A          100 L-D--VTPLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVT  167 (457)
T ss_dssp             C-C--CTTCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred             e-e--cCCCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccc
Confidence            5 3  56654 799999999999975 3  88999999999999999974   3889999999999999655555  478


Q ss_pred             cCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEE
Q 035895          186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID  265 (527)
Q Consensus       186 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~  265 (527)
                      .+++|+.|++++|++++. |  ++.+++|+.|++++|++++++  +..+++|+.|++++|++.+ +|  ++.+++|++|+
T Consensus       168 ~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            899999999999999974 4  889999999999999999985  7889999999999999998 56  88999999999


Q ss_pred             ccCCCCCCCChhhhhcCC-------CCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccc--------hhhh
Q 035895          266 FSRNNLLGDIPTTIQGLK-------SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS--------LEKL  330 (527)
Q Consensus       266 Ls~N~l~~~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--------~~~l  330 (527)
                      +++|++++..+..+..++       +|+.|++++|.+.+.+|  +..+++|+.|++++|.+.+.+|..        +..+
T Consensus       240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~  317 (457)
T 3bz5_A          240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN  317 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence            999999987766666555       56777777887777776  578899999999999987777653        3444


Q ss_pred             ccCCeeEeeeeeee
Q 035895          331 LYLNILLIVVVILA  344 (527)
Q Consensus       331 ~~L~~L~~~~~~~~  344 (527)
                      +.|+.|+++.+.+.
T Consensus       318 ~~L~~L~L~~N~l~  331 (457)
T 3bz5_A          318 PKLVYLYLNNTELT  331 (457)
T ss_dssp             TTCCEEECTTCCCS
T ss_pred             ccCCEEECCCCccc
Confidence            56666666655553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.4e-29  Score=247.12  Aligned_cols=205  Identities=22%  Similarity=0.259  Sum_probs=126.3

Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCc-ccccCcccccCCCCCCEE
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNK-LNGSISITLGKLQKLQFL  169 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  169 (527)
                      ++|++|++++|++++..+..+..+. +|++|++++|.+++..|..|..+++|++|++++|+ ++...+..+..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4566677777766665555555543 56666666666666666666666666677776665 555556666666666666


Q ss_pred             eccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCccc
Q 035895          170 SFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFV  248 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~~~  248 (527)
                      ++++|.+++..|..|..+++|++|++++|++++..+..|+.+++|++|++++|+++.+|.. +..+++|+.|++++|.+.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            6666666665566666666666666666666665555666666666666666666665542 444555555555555555


Q ss_pred             ccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            555555555555555555555555544445555555555555555554

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.96  E-value=4.5e-30  Score=252.24  Aligned_cols=140  Identities=26%  Similarity=0.421  Sum_probs=111.7

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCcc----ceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNE----DFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~----~~~~lv~e  432 (527)
                      ++|.+.+.||+|+||+||+|++ +|+.||||++...                            |..+    ...++|||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E   81 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence            3477889999999999999997 5899999997421                            1111    24689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-----YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ||++|+|.++++..  .++|.++.+++.|+++||+|+|..     +.++||||||||+|||+++++++||+|||+|+...
T Consensus        82 y~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  159 (303)
T 3hmm_A           82 YHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             CCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             CCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence            99999999999764  578999999999999999999932     23499999999999999999999999999999875


Q ss_pred             CCCCc--cceeccccccccccC
Q 035895          508 GEDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~--~~~~~~~~t~~y~aP  527 (527)
                      .....  ......+||++||||
T Consensus       160 ~~~~~~~~~~~~~~GT~~ymAP  181 (303)
T 3hmm_A          160 SATDTIDIAPNHRVGTKRYMAP  181 (303)
T ss_dssp             TTTTEESCC-----CCGGGCCH
T ss_pred             CCCCceeeecccccccccccCH
Confidence            43322  122245799999998

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=9.1e-29  Score=257.54  Aligned_cols=247  Identities=23%  Similarity=0.254  Sum_probs=226.7

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      ....++.+++.++. +|..+   ..+++.|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|+.|+|
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCc-cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            46789999999986 45543   358999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC-CCCCCCch-hhhCCCCccEEEccCCcccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS-NELTSIPS-ILWNLKDILYLDFWSNLFVG  249 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~lp~-~~~~l~~L~~l~l~~n~~~~  249 (527)
                      ++|++++..+..|..+++|++|+|++|+++...+..|.++++|+.|++++ |.+..+|. .+..+++|++|++++|.+.+
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            99999987788899999999999999999988888999999999999999 66777775 57789999999999999986


Q ss_pred             cCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhh
Q 035895          250 PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK  329 (527)
Q Consensus       250 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  329 (527)
                      . | .+..+++|++|+|++|.+.+..|..|.++++|+.|++++|++++..|..|.++++|+.|+|++|+++++++..+..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4 4 5889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCeeEeeeeeee
Q 035895          330 LLYLNILLIVVVILA  344 (527)
Q Consensus       330 l~~L~~L~~~~~~~~  344 (527)
                      ++.|+.|+++.+.+.
T Consensus       289 l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          289 LRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEccCCCcC
Confidence            999999999987764

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.96  E-value=2.3e-30  Score=252.40  Aligned_cols=137  Identities=29%  Similarity=0.426  Sum_probs=114.0

Q ss_pred             CCccccceeccCCceEEEEEEc----cCCcEEEEEEEeec-------------------------------cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS-------------------------------CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~-------------------------------~~~~~~~~l  429 (527)
                      ++|++.+.||+|+||+||+|+.    .+++.||||+++..                               +.+++..++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            5699999999999999999985    25789999987421                               223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |||||+||+|.+++.+.+ .+++.++..++.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.....
T Consensus       104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  179 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred             EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence            999999999999997654 5788899999999999999999   999999999999999999999999999999876433


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  .....+||+.||||
T Consensus       180 ~~--~~~~~~GT~~YmAP  195 (304)
T 3ubd_A          180 EK--KAYSFCGTVEYMAP  195 (304)
T ss_dssp             -C--CCCSCCCCGGGCCH
T ss_pred             Cc--cccccccCcccCCH
Confidence            22  22346799999998

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1e-29  Score=250.81  Aligned_cols=277  Identities=19%  Similarity=0.223  Sum_probs=223.2

Q ss_pred             EEEcccccccc---ccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcc--cChhHhhccccccEEE
Q 035895           48 VFDVDNNYVLG---RLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGF--LPRVVGNFSQSLEFIW  122 (527)
Q Consensus        48 ~L~Ls~N~~~~---~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~L~~L~  122 (527)
                      .++.+++.+..   .++..++.|+|++|.++.++..     .|.++++|++|++++|+++..  .+..+..+ ++|++|+
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~   84 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLD   84 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEE
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCcccCcccccccc-cccCEEE
Confidence            45555555432   2234577888888888766553     468899999999999999853  35666665 4799999


Q ss_pred             cccCccccccchhhcCCcCCcEEEeecCcccccCc-ccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC
Q 035895          123 MSDCNISGGISEEIGNLTDLISIDLGGNKLNGSIS-ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS  201 (527)
Q Consensus       123 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  201 (527)
                      +++|.++. +|..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.++
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            99999985 56668999999999999999987665 57899999999999999999888899999999999999999998


Q ss_pred             C-CCCccccCCccCceeeCCCCCCCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhh
Q 035895          202 G-SIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI  279 (527)
Q Consensus       202 ~-~~p~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  279 (527)
                      + ..|..|..+++|++|++++|+++++ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..|..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            6 6788999999999999999999997 6678889999999999999998888889999999999999999999999999


Q ss_pred             hcCC-CCCEEEcccccceeecCC--CCCCCCCCCEEeCCCCcccccCccchhhhc
Q 035895          280 QGLK-SLQFLSLGHNRLQGSIPN--SFDDLVSLESLDLSNNNLSEIIPLSLEKLL  331 (527)
Q Consensus       280 ~~l~-~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~  331 (527)
                      ..++ +|++|++++|.+++.-+.  ...-+...+.+.+..+.+....|..+++..
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            9984 999999999999753210  011122344445556666666666655443

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.96  E-value=7.8e-30  Score=258.71  Aligned_cols=136  Identities=27%  Similarity=0.345  Sum_probs=117.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~  434 (527)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++..                             .+..++..++|||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            4599999999999999999986 5799999999853                             123456778999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +||+|.+++...  .+++.++..|+.||+.||+|||   +++||||||||+|||++.+|.+||+|||+|+.+.....  .
T Consensus       231 ~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~  303 (423)
T 4fie_A          231 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R  303 (423)
T ss_dssp             TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--C
T ss_pred             CCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--c
Confidence            999999998653  4788899999999999999999   99999999999999999999999999999998754322  2


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .+..+||++||||
T Consensus       304 ~~~~~GTp~YmAP  316 (423)
T 4fie_A          304 RKSLVGTPYWMAP  316 (423)
T ss_dssp             BCCCEECTTTCCH
T ss_pred             ccccccCcCcCCH
Confidence            2346899999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.9e-30  Score=257.23  Aligned_cols=271  Identities=18%  Similarity=0.188  Sum_probs=230.2

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      ..++++|.++.++..+        .++|++|++++|++++..+..+..+. +|+.|++++|.+++..+..|..+++|++|
T Consensus        35 ~c~~~~~~l~~iP~~~--------~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGL--------TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EEECCSTTCSSCCTTC--------CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             EeeCCCCCcccccccc--------cccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4788888888876643        25899999999999987776787775 79999999999999889999999999999


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccC-hhhhcCcccCeeeeecc-cCCCCCCccccCCccCceeeCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGN-KLSGSIPTCFGNLTALRNLHLDSNE  223 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~  223 (527)
                      ++++|++++..+..++.+++|++|++++|++++..+ ..|..+++|++|++++| .+....|..|+++++|++|++++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999998777779999999999999999985444 47899999999999999 5777778899999999999999999


Q ss_pred             CCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhh---hcCCCCCEEEccccccee--
Q 035895          224 LTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI---QGLKSLQFLSLGHNRLQG--  297 (527)
Q Consensus       224 l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~--  297 (527)
                      ++++ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+   .....++.++++++.+++  
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            9986 7788899999999999999865444445668999999999999987665544   346778889999988875  


Q ss_pred             --ecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeeec
Q 035895          298 --SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILAL  345 (527)
Q Consensus       298 --~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~~  345 (527)
                        .+|..+..+++|+.|++++|+++.+++..+..++.|+.|+++.+.+..
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence              367778899999999999999997666667999999999999887643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=254.48  Aligned_cols=247  Identities=23%  Similarity=0.260  Sum_probs=226.3

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      ..+.++.+++.++. +|..+   ..+++.|+|++|+++...+..|..+++|++|+|++|++++..+..|.++++|+.|+|
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCc-CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            46789999999986 45543   357999999999999999999999999999999999999988899999999999999


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC-CCCCCCch-hhhCCCCccEEEccCCcccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS-NELTSIPS-ILWNLKDILYLDFWSNLFVG  249 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~lp~-~~~~l~~L~~l~l~~n~~~~  249 (527)
                      ++|+++...+..|..+++|++|+|++|+++...+..|.++++|++|++++ |.+..+|. .+.++++|++|++++|.+..
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            99999977777899999999999999999988888999999999999999 55666765 57889999999999999884


Q ss_pred             cCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhh
Q 035895          250 PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK  329 (527)
Q Consensus       250 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  329 (527)
                       +| .+..+++|++|+|++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|+++++.+..+..
T Consensus       200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence             44 4889999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCeeEeeeeeee
Q 035895          330 LLYLNILLIVVVILA  344 (527)
Q Consensus       330 l~~L~~L~~~~~~~~  344 (527)
                      +..|+.|+++.+.+.
T Consensus       278 l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          278 LHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEcCCCCcc
Confidence            999999999887764

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.96  E-value=9.8e-30  Score=253.90  Aligned_cols=149  Identities=24%  Similarity=0.385  Sum_probs=121.8

Q ss_pred             cHHHHhhhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------
Q 035895          376 SYQELLRATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------  419 (527)
Q Consensus       376 ~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------  419 (527)
                      +.+.++...++|++.+.||+|+||+||+|++.      +++.||||++..                              
T Consensus        55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~  134 (353)
T 4ase_A           55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL  134 (353)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            33455556678999999999999999999853      246899998742                              


Q ss_pred             -ccCc-cceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCC
Q 035895          420 -SCSN-EDFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL  482 (527)
Q Consensus       420 -~~~~-~~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl  482 (527)
                       .|.. .+..++|||||++|+|.++|+...               ..+++.++..|+.|||+||+|||   +++||||||
T Consensus       135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDL  211 (353)
T 4ase_A          135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL  211 (353)
T ss_dssp             EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCcc
Confidence             2323 345789999999999999997532               34789999999999999999999   999999999


Q ss_pred             CCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       483 k~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|||+++++.+||+|||+|+.+.........+...||+.||||
T Consensus       212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAP  256 (353)
T 4ase_A          212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  256 (353)
T ss_dssp             SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCH
Confidence            999999999999999999999987544433334456789999998

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.96  E-value=1.7e-29  Score=242.94  Aligned_cols=136  Identities=27%  Similarity=0.458  Sum_probs=103.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++..                                ..+++..++|
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            47899999999999999999986 57999999998521                                2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||| +|+|.+++.+. ..++..++..++.||+.||+|+|   +++||||||||+|||+++++.+||+|||+|+......
T Consensus        92 mEy~-~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  166 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN  166 (275)
T ss_dssp             EECC-CEEHHHHHHHS-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred             EeCC-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence            9999 67999998765 46889999999999999999999   9999999999999999999999999999998765332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                         .....+||+.||||
T Consensus       167 ---~~~~~~GT~~Y~AP  180 (275)
T 3hyh_A          167 ---FLKTSCGSPNYAAP  180 (275)
T ss_dssp             -----------CTTSCH
T ss_pred             ---ccCCeeECcccCCh
Confidence               22346799999998

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.6e-28  Score=239.61  Aligned_cols=227  Identities=22%  Similarity=0.208  Sum_probs=198.6

Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEecc
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR  172 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  172 (527)
                      -++++.+++.++.+ |..+   .++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        13 ~~~~~c~~~~l~~i-p~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQAV-PVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCSSC-CTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCcccC-CcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            36788999988864 5433   4579999999999999888899999999999999999998888899999999999999


Q ss_pred             Ccc-cccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCccccc
Q 035895          173 GNE-LEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       173 ~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~~~~~  250 (527)
                      +|. +....|..|..+++|++|++++|++++..|..|.++++|++|++++|+++.+|.. +..+++|+.|++++|.+.+.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            997 8877788999999999999999999998899999999999999999999998764 67788899999999988877


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      .+..+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++....
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            7777888889999999999888888888888889999999999888766667888888999999999887543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.96  E-value=4.4e-29  Score=242.12  Aligned_cols=133  Identities=27%  Similarity=0.360  Sum_probs=110.4

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c----CccceeEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C----SNEDFRALV  430 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~----~~~~~~~lv  430 (527)
                      |++.+.||+|+||+||+|+. .+++.||+|++...                               +    ..++..++|
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            36678899999999999986 56899999997421                               0    113456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~  507 (527)
                      ||||+||+|.+++.+. ..+++..+..|+.||+.||+|||   +++  ||||||||+|||++ +++.+||+|||+|+...
T Consensus       108 mEy~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~  183 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             EECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence            9999999999999764 46788899999999999999999   776  99999999999998 57999999999998653


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..    .....+||+.||||
T Consensus       184 ~~----~~~~~~GTp~YmAP  199 (290)
T 3fpq_A          184 AS----FAKAVIGTPEFMAP  199 (290)
T ss_dssp             TT----SBEESCSSCCCCCG
T ss_pred             CC----ccCCcccCccccCH
Confidence            22    12346799999999

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=4.7e-28  Score=251.64  Aligned_cols=245  Identities=28%  Similarity=0.331  Sum_probs=104.9

Q ss_pred             hhccc-CCCceeecCchhhhcCCCCCEEEccccccccc--cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcc
Q 035895           23 ICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGR--LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDIS   99 (527)
Q Consensus        23 ~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~--~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls   99 (527)
                      +..++ ++|+++++ | .|.++++|++|++++|.+.+.  .+..++.|++++|.++.++       .+.++++|++|+++
T Consensus       133 L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-------~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          133 LEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-------ELQNLPFLTAIYAD  203 (454)
T ss_dssp             CCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-------cccCCCCCCEEECC
Confidence            33344 44444442 2 244444445555544444331  1123444444444444321       13444445555555


Q ss_pred             cCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccc
Q 035895          100 RNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS  179 (527)
Q Consensus       100 ~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  179 (527)
                      +|++++ +|..    ..+|+.|++++|.++ .+| .+..+++|++|++++|++++. |.   .+++|+.|++++|++++ 
T Consensus       204 ~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          204 NNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             SSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-
T ss_pred             CCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-
Confidence            555443 2221    123455555555444 223 244455555555555554432 11   12445555555555443 


Q ss_pred             cChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCC
Q 035895          180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK  259 (527)
Q Consensus       180 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~  259 (527)
                      +|..   +++|+.|++++|++++. |..   .++|+.|++++|++++++..   .++|+.|++++|++.+ +|..   ++
T Consensus       272 l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~  337 (454)
T 1jl5_A          272 LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPAL---PP  337 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-cccc---CC
Confidence            2221   23445555555554431 110   13444555555554443321   1244555555554443 3322   34


Q ss_pred             CCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee--ecCCCCCCC
Q 035895          260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG--SIPNSFDDL  306 (527)
Q Consensus       260 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l  306 (527)
                      +|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..+
T Consensus       338 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          338 RLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            45555555555542 333   24455555555555544  344444444

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.96  E-value=2.5e-29  Score=245.86  Aligned_cols=140  Identities=24%  Similarity=0.442  Sum_probs=104.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc------------------------------C-----------
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC------------------------------S-----------  422 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~------------------------------~-----------  422 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...                              .           
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4699999999999999999986 578999999985310                              0           


Q ss_pred             -ccceeEEEEEeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 035895          423 -NEDFRALVLEYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       423 -~~~~~~lv~ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                       .+...++|||||+||+|.+++.....  ..++..+..|+.||++||+|||   +++||||||||+|||++.++.+||+|
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence             01135899999999999999976432  3456667889999999999999   99999999999999999999999999


Q ss_pred             cccccccCCCCCc----------cceeccccccccccC
Q 035895          500 FGIAKLLTGEDQS----------MTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~----------~~~~~~~~t~~y~aP  527 (527)
                      ||+|+.+......          ...+..+||+.||||
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAP  199 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSP  199 (299)
T ss_dssp             CCCC--------------------------CCCTTSCH
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCH
Confidence            9999987543211          112345799999998

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.8e-29  Score=250.29  Aligned_cols=254  Identities=19%  Similarity=0.181  Sum_probs=207.2

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      ..+++.+.+......     .+..+++|++|+|++|++++..|..+..+. +|++|+|++|.+++..+  +..+++|++|
T Consensus        14 i~~ls~~~l~~~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           14 IEKVTDSSLKQALAS-----LRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EESCCTTTHHHHHHH-----HHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             EeeccccchhhhHHH-----HhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            345555555432211     235567899999999999987777887775 79999999999987665  8899999999


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      ++++|++++..     ..++|+.|++++|++++..+.   .+++|+.|++++|++++..|..|+.+++|++|++++|+++
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            99999998644     348999999999999866554   3678999999999999888889999999999999999999


Q ss_pred             CCc-hhh-hCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCC
Q 035895          226 SIP-SIL-WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF  303 (527)
Q Consensus       226 ~lp-~~~-~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  303 (527)
                      .++ ..+ ..+++|++|++++|.+.+..  ....+++|++|++++|++++. |..|..+++|++|++++|+++ .+|..+
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHh
Confidence            864 444 36889999999999988662  234589999999999999864 555999999999999999999 578889


Q ss_pred             CCCCCCCEEeCCCCccc-ccCccchhhhccCCeeEee
Q 035895          304 DDLVSLESLDLSNNNLS-EIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       304 ~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~~~  339 (527)
                      ..+++|+.|++++|+++ +.+|..+..++.|+.+++.
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            99999999999999998 7778888888777766544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=8.9e-30  Score=251.91  Aligned_cols=222  Identities=19%  Similarity=0.234  Sum_probs=146.9

Q ss_pred             CCEEEcccCCCC-cccChhHh-------hccccccEEEcccCccccccchhh--cCCcCCcEEEeecCcccccCcccccC
Q 035895           93 LKKLDISRNPLD-GFLPRVVG-------NFSQSLEFIWMSDCNISGGISEEI--GNLTDLISIDLGGNKLNGSISITLGK  162 (527)
Q Consensus        93 L~~L~Ls~N~l~-~~~~~~~~-------~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~  162 (527)
                      |+.|+|++|.++ ..+|..+.       .+ ++|++|+|++|.+++..|..+  ..+++|++|+|++|++++. |..++.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            555566666653 23343332       23 356666666666666556554  6666777777777777655 555555


Q ss_pred             C-----CCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCC--CCccc--cCCccCceeeCCCCCCCCCch----
Q 035895          163 L-----QKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS--IPTCF--GNLTALRNLHLDSNELTSIPS----  229 (527)
Q Consensus       163 l-----~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~lp~----  229 (527)
                      +     ++|++|++++|++.+..|..|..+++|++|++++|++.+.  .|..+  +.+++|++|++++|+++.+|.    
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            5     6777777777777666666677777777777777776543  22223  677777777777777775442    


Q ss_pred             hhhCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCC
Q 035895          230 ILWNLKDILYLDFWSNLFVGPLP-SKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS  308 (527)
Q Consensus       230 ~~~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  308 (527)
                      .+..+++|++|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            22456777777777777776654 44556778888888888887 5666555  7788888888888755 55 778888


Q ss_pred             CCEEeCCCCcccc
Q 035895          309 LESLDLSNNNLSE  321 (527)
Q Consensus       309 L~~L~ls~N~l~~  321 (527)
                      |+.|++++|++++
T Consensus       298 L~~L~L~~N~l~~  310 (312)
T 1wwl_A          298 VGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECTTCTTTC
T ss_pred             CCEEeccCCCCCC
Confidence            8888888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.7e-29  Score=249.93  Aligned_cols=246  Identities=17%  Similarity=0.143  Sum_probs=211.4

Q ss_pred             CCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccc-cccchhhc-------CCcCCcEEEeecCcccccCcc
Q 035895           87 MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNIS-GGISEEIG-------NLTDLISIDLGGNKLNGSISI  158 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~  158 (527)
                      +...++|+.|++++|.+  .+|..+..   .|+.|+|++|.++ ...|..+.       .+++|++|+|++|++++..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34567799999999999  57776654   3899999999995 45666665       799999999999999988888


Q ss_pred             cc--cCCCCCCEEeccCcccccccChhhhcC-----cccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC---Cc
Q 035895          159 TL--GKLQKLQFLSFRGNELEGSIPNVLCHL-----AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS---IP  228 (527)
Q Consensus       159 ~~--~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---lp  228 (527)
                      .+  ..+++|+.|++++|++++. |..+..+     ++|++|++++|++++..|..|+.+++|++|++++|++.+   +|
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  8999999999999999977 8888887     999999999999999998999999999999999999876   35


Q ss_pred             hhh--hCCCCccEEEccCCcccc---cCCccccCCCCCCEEEccCCCCCCCCh-hhhhcCCCCCEEEcccccceeecCCC
Q 035895          229 SIL--WNLKDILYLDFWSNLFVG---PLPSKIGNLKVLTRIDFSRNNLLGDIP-TTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       229 ~~~--~~l~~L~~l~l~~n~~~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      ..+  ..+++|++|++++|.+.+   .....+..+++|++|++++|++.+..| ..+..+++|++|+|++|+++ .+|..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence            455  789999999999999873   222445688999999999999998775 56777899999999999998 67777


Q ss_pred             CCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeee
Q 035895          303 FDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +.  ++|+.|++++|++++. |. +..++.|+.|+++.+.+
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence            76  8999999999999987 55 88999999998877654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=4.3e-30  Score=268.14  Aligned_cols=326  Identities=17%  Similarity=0.136  Sum_probs=258.1

Q ss_pred             hhhcchhccc-CCCceeec----CchhhhcCCCCCEEEccccccccc--------ccc---ccceEEcccccccCCCCCC
Q 035895           18 DVCYRICTID-SQNKLVGI----VSITIFNLSTLKVFDVDNNYVLGR--------LSS---IVDELSLSDNYLTSSTPEL   81 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~----~~~~~~~l~~L~~L~Ls~N~~~~~--------~~~---~l~~L~Ls~N~l~~~~~~~   81 (527)
                      ..|.++..++ ++|+++..    ++..+..+++|++|+|++|.+...        ++.   .++.|+|++|.++.... .
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~-~  103 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC-G  103 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH-H
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH-H
Confidence            4567888888 88888853    467788899999999999987431        121   58999999999875220 0


Q ss_pred             cccccCCCCCCCCEEEcccCCCCcccChhHhhc----cccccEEEcccCcccccc----chhhcCCcCCcEEEeecCccc
Q 035895           82 SFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNF----SQSLEFIWMSDCNISGGI----SEEIGNLTDLISIDLGGNKLN  153 (527)
Q Consensus        82 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~  153 (527)
                      .+...+..+++|++|++++|++++..+..+...    ..+|+.|++++|.++...    +..+..+++|++|++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            122457889999999999999986545444432    236999999999998643    666778899999999999998


Q ss_pred             ccCccccc-----CCCCCCEEeccCcccccc----cChhhhcCcccCeeeeecccCCCCC-----CccccCCccCceeeC
Q 035895          154 GSISITLG-----KLQKLQFLSFRGNELEGS----IPNVLCHLAVLFQLDLRGNKLSGSI-----PTCFGNLTALRNLHL  219 (527)
Q Consensus       154 ~~~~~~~~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L  219 (527)
                      ...+..+.     ..++|+.|++++|.++..    ++..+..+++|++|++++|.+....     +..+..+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            65444443     367999999999999864    5778889999999999999987532     333456899999999


Q ss_pred             CCCCCCC-----CchhhhCCCCccEEEccCCcccccCCcccc-----CCCCCCEEEccCCCCCCC----ChhhhhcCCCC
Q 035895          220 DSNELTS-----IPSILWNLKDILYLDFWSNLFVGPLPSKIG-----NLKVLTRIDFSRNNLLGD----IPTTIQGLKSL  285 (527)
Q Consensus       220 ~~N~l~~-----lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L  285 (527)
                      ++|.++.     ++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    +|..+..+++|
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            9999998     677888899999999999988754443333     236999999999999865    56778889999


Q ss_pred             CEEEcccccceeecCCCCCC-----CCCCCEEeCCCCcccc----cCccchhhhccCCeeEeeeeeee
Q 035895          286 QFLSLGHNRLQGSIPNSFDD-----LVSLESLDLSNNNLSE----IIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       286 ~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ++|++++|++++..+..+..     .++|+.|++++|.+++    .+|..+..++.|+.|+++.+.+.
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            99999999998654443332     6799999999999986    67888999999999999987664

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.95  E-value=1.7e-28  Score=260.13  Aligned_cols=137  Identities=28%  Similarity=0.464  Sum_probs=118.7

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------------ccCccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------------SCSNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------------~~~~~~~  426 (527)
                      ..++|++.++||+|+||+||+|+. .+|+.||||++..                                   ...+++.
T Consensus       187 slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~  266 (689)
T 3v5w_A          187 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK  266 (689)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             chHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCE
Confidence            457899999999999999999986 5799999999842                                   1224567


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .|+|||||+||+|.+++... ..++...+..|+.||+.||+|||   +++||||||||+|||++.+|.+||+|||+|+.+
T Consensus       267 lylVmEy~~GGdL~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~  342 (689)
T 3v5w_A          267 LSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF  342 (689)
T ss_dssp             EEEEECCCCSCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence            78999999999999999765 35788899999999999999999   999999999999999999999999999999987


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....    ....+||+.||||
T Consensus       343 ~~~~----~~t~~GTp~YmAP  359 (689)
T 3v5w_A          343 SKKK----PHASVGTHGYMAP  359 (689)
T ss_dssp             SSCC----CCSCCSCGGGCCH
T ss_pred             CCCC----CCCccCCcCccCH
Confidence            5432    2246799999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=5.6e-27  Score=251.19  Aligned_cols=267  Identities=23%  Similarity=0.255  Sum_probs=212.7

Q ss_pred             hhccc-CCCceeecCchhhhcCCCCCEEEcccccccccc--ccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcc
Q 035895           23 ICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRL--SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDIS   99 (527)
Q Consensus        23 ~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~--~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls   99 (527)
                      +..++ ++|.++.+++. +.  ++|+.|+|++|.+....  ...++.|+|++|+|++++.         .+++|++|+++
T Consensus        42 l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---------LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---------CCTTCCEEEEC
T ss_pred             CcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---------CCCCCCEEECc
Confidence            44566 77888866543 33  78999999999886432  2358899999999887543         45789999999


Q ss_pred             cCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccc
Q 035895          100 RNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS  179 (527)
Q Consensus       100 ~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  179 (527)
                      +|+++++ |.    ...+|+.|++++|.++.+ |..   +++|++|++++|++++. |.   .+++|+.|++++|.+++ 
T Consensus       110 ~N~l~~l-~~----~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          110 SNPLTHL-PA----LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             SCCCCCC-CC----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred             CCcCCCC-CC----CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-
Confidence            9999874 43    235799999999999864 432   48899999999999864 32   45789999999999985 


Q ss_pred             cChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCC
Q 035895          180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK  259 (527)
Q Consensus       180 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~  259 (527)
                      +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++.+|..   +++|+.|++++|.+.+ +|   ..++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~  241 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPS  241 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCC
Confidence            55   456889999999999986 4432   47899999999999998864   4789999999998886 55   4568


Q ss_pred             CCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCC
Q 035895          260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLN  334 (527)
Q Consensus       260 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  334 (527)
                      +|++|++++|+++. +|.   .+++|+.|+|++|+++ .+|..|..+++|+.|+|++|++++..|..+..+....
T Consensus       242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~  311 (622)
T 3g06_A          242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP  311 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHST
T ss_pred             cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccccc
Confidence            89999999999984 555   6788999999999998 6788899999999999999999999888888776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.2e-28  Score=242.47  Aligned_cols=245  Identities=19%  Similarity=0.194  Sum_probs=121.8

Q ss_pred             CCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccC
Q 035895           28 SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRN  101 (527)
Q Consensus        28 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  101 (527)
                      +.+.+...+...+..+++|++|+|++|.+.+..+.      .++.|+|++|.+++..       .+..+++|++|++++|
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNN   90 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSS
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCC
Confidence            55666666667777788889999888877654432      2444444444444321       1344455555555555


Q ss_pred             CCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccC
Q 035895          102 PLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP  181 (527)
Q Consensus       102 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  181 (527)
                      ++++..+.      ++|+.|++++|.+++..+..   +++|++|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus        91 ~l~~l~~~------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           91 YVQELLVG------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEEEEEC------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             ccccccCC------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            55543211      24555555555555443322   3445555555555554444455555555555555555554444


Q ss_pred             hhhh-cCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCC
Q 035895          182 NVLC-HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKV  260 (527)
Q Consensus       182 ~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~  260 (527)
                      ..+. .+++|++|++++|.+++..+  ...+++|++|++++|+++++|..+..+++|+.|++++|.+.+ +|..+..+++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~  238 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCC
Confidence            4332 44555555555555543311  122455555555555555544444444444444444444432 3333444444


Q ss_pred             CCEEEccCCCCC-CCChhhhhcCCCCCEEEcc
Q 035895          261 LTRIDFSRNNLL-GDIPTTIQGLKSLQFLSLG  291 (527)
Q Consensus       261 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~  291 (527)
                      |+.|++++|.+. +.+|..+..+++|+.|+++
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            444444444444 3334444444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=8.1e-28  Score=252.22  Aligned_cols=235  Identities=20%  Similarity=0.193  Sum_probs=195.7

Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCE
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF  168 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  168 (527)
                      .+++|++|+|++|.+++..|..+..+. +|++|+|++|.+++..|  +..+++|++|+|++|.+++..+     .++|+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            455899999999999987777887765 79999999999987666  8889999999999999886543     388999


Q ss_pred             EeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCC-chhhh-CCCCccEEEccCCc
Q 035895          169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILW-NLKDILYLDFWSNL  246 (527)
Q Consensus       169 L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l-p~~~~-~l~~L~~l~l~~n~  246 (527)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..|+++++|+.|+|++|.++++ |..+. .++.|+.|++++|.
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999999876554   457889999999999988888899999999999999999984 55555 68899999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc-ccCcc
Q 035895          247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS-EIIPL  325 (527)
Q Consensus       247 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~  325 (527)
                      +.+..+  +..+++|++|+|++|.+++.+| .|..+++|+.|++++|++++ +|..+..+++|+.|++++|++. +.+|.
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            887633  4468999999999999997555 59999999999999999995 7888999999999999999998 66677


Q ss_pred             chhhhccCCeeEe
Q 035895          326 SLEKLLYLNILLI  338 (527)
Q Consensus       326 ~~~~l~~L~~L~~  338 (527)
                      .+..++.+..+.+
T Consensus       257 ~~~~l~~L~~l~~  269 (487)
T 3oja_A          257 FFSKNQRVQTVAK  269 (487)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhCCCCcEEec
Confidence            7777766665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=7.9e-27  Score=226.50  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=125.4

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34455555555544444445555555555555555554444455555555555555555554444555555555555555


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCC--CchhhhCCCCccEEEccCCcccccCCccccCCCCCC----EEEccCCC
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT----RIDFSRNN  270 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~----~L~Ls~N~  270 (527)
                      +|.+.+..+..|+.+++|++|++++|.++.  +|..+..+++|++|++++|.+.+..+..+..++.|+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            555555444455555555555555555554  345555555555555555555554445555555555    78888888


Q ss_pred             CCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      +.+..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|+++...|
T Consensus       189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            88655555544 478999999999887777778889999999999998876443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.94  E-value=1.4e-27  Score=239.76  Aligned_cols=120  Identities=28%  Similarity=0.393  Sum_probs=102.7

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc----CCcEEEEEEEee----------------------------ccCccceeE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHF----------------------------SCSNEDFRA  428 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~----------------------------~~~~~~~~~  428 (527)
                      ..-.+.|++.+.||+|+||+||+|+.+    +++.||||++..                            ....++..+
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            344577999999999999999999753    578899998742                            112345778


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccccC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLT  507 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~~~  507 (527)
                      +|||||+||+|.+++.    .++..++..++.|++.||+|||   +++||||||||+|||++.+ +.+||+|||+|+...
T Consensus        97 lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           97 IAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             EEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             EEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            9999999999999984    3788889999999999999999   9999999999999999876 899999999998654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=249.77  Aligned_cols=228  Identities=20%  Similarity=0.215  Sum_probs=122.7

Q ss_pred             CCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccc
Q 035895           45 TLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSL  118 (527)
Q Consensus        45 ~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L  118 (527)
                      +|+.|+|++|.+.+..|.      .++.|+|++|.+++..       .+..+++|++|+|++|.++++.+.      ++|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N~l~~l~~~------~~L  101 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQELLVG------PSI  101 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------ECTTCTTCCEEECCSSEEEEEEEC------TTC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------ccccCCCCCEEEecCCcCCCCCCC------CCc
Confidence            677777777766543332      1333444444433211       134555566666666666543221      346


Q ss_pred             cEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhh-cCcccCeeeeec
Q 035895          119 EFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLC-HLAVLFQLDLRG  197 (527)
Q Consensus       119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~  197 (527)
                      +.|++++|.+++..+.   .+++|++|+|++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            6666666666554443   235566666666666655555555666666666666666655555554 456666666666


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCC-CCCh
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLL-GDIP  276 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p  276 (527)
                      |.|++..+  +..+++|+.|+|++|.++++|+.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             Cccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            66654422  223556666666666666655555555555555555555553 3444555555555555555554 3444


Q ss_pred             hhhhcCCCCCEEEcc
Q 035895          277 TTIQGLKSLQFLSLG  291 (527)
Q Consensus       277 ~~~~~l~~L~~L~L~  291 (527)
                      ..+..++.|+.++++
T Consensus       256 ~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          256 DFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCcEEecc
Confidence            455555555555543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.8e-27  Score=239.26  Aligned_cols=138  Identities=30%  Similarity=0.422  Sum_probs=113.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c------Cccce
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C------SNEDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~------~~~~~  426 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                               +      .+.+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5699999999999999999986 57999999997421                               0      12246


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++|||||+ |+|.+++... ..+++.++..|+.||+.||+|||   +++||||||||+|||++.++.+|++|||+|+.+
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~-~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~  208 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSS-QPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGL  208 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSS-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred             EEEEEeCCC-CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeec
Confidence            789999996 6899998654 46889999999999999999999   999999999999999999999999999999976


Q ss_pred             CCCCC--ccceeccccccccccC
Q 035895          507 TGEDQ--SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~--~~~~~~~~~t~~y~aP  527 (527)
                      .....  ....+..+||++||||
T Consensus       209 ~~~~~~~~~~~~~~~GT~~Y~AP  231 (398)
T 4b99_A          209 CTSPAEHQYFMTEYVATRWYRAP  231 (398)
T ss_dssp             -------CCCCCSSCCCCTTCCH
T ss_pred             ccCccccccccccceeChHhcCH
Confidence            43211  1223356799999998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1e-25  Score=218.71  Aligned_cols=205  Identities=26%  Similarity=0.253  Sum_probs=143.2

Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      ++|++|++++|++++..+..+..+. +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3567777777777766555565553 577777777777766666677777777777777777766666677777777777


Q ss_pred             ccCcccccccChhhhcCcccCeeeeecccCCCC-CCccccCCccCceeeCCCCCCCCCc-hhhhCCCCcc----EEEccC
Q 035895          171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGS-IPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDIL----YLDFWS  244 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~lp-~~~~~l~~L~----~l~l~~  244 (527)
                      +++|.+.+..+..+..+++|++|++++|++++. +|..|+++++|++|++++|++++++ ..+..+..|+    .+++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            777777665555677777777777777777653 4667777777777777777777654 3344444444    677777


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee
Q 035895          245 NLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       245 n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (527)
                      |.+.+..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++..
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            7776655554443 378888888888887766777888888888888888874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=8.4e-25  Score=234.32  Aligned_cols=255  Identities=25%  Similarity=0.262  Sum_probs=211.8

Q ss_pred             CCCCEEEccccccccc---cccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccE
Q 035895           44 STLKVFDVDNNYVLGR---LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF  120 (527)
Q Consensus        44 ~~L~~L~Ls~N~~~~~---~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  120 (527)
                      .+++.|++++|.+...   ++..++.|+|++|.|+.++.         .+++|++|+|++|+++++ |.   . .++|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l-p~---~-l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL-PV---L-PPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCC-CC---C-CTTCCE
T ss_pred             CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcC-CC---C-CCCCCE
Confidence            4589999999998632   23468999999999997654         358899999999999974 54   2 358999


Q ss_pred             EEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccC
Q 035895          121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKL  200 (527)
Q Consensus       121 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  200 (527)
                      |++++|.+++..+    .+++|++|++++|++++. |.   .+++|+.|++++|++++ +|.   .+.+|+.|++++|+|
T Consensus       106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EEECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             EECcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCC
Confidence            9999999997544    678999999999999864 33   35899999999999985 454   356899999999999


Q ss_pred             CCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhh
Q 035895          201 SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQ  280 (527)
Q Consensus       201 ~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  280 (527)
                      ++ +|   ..+++|+.|++++|+++.+|..   +++|+.|++++|.+.. +|.   .+++|++|++++|.+++ +|   .
T Consensus       174 ~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          174 TS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             SC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred             CC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence            96 45   4578999999999999999864   4789999999999874 443   35789999999999986 55   5


Q ss_pred             cCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      .+++|+.|++++|+|+ .+|.   .+++|+.|+|++|+++. +|..+..++.|+.|+++.+.+.
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCC
Confidence            6689999999999998 4565   57899999999999994 5788999999999999987774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3e-25  Score=214.70  Aligned_cols=204  Identities=26%  Similarity=0.305  Sum_probs=156.9

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      ..+.+++++|+++. +|..+   ..+++.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            46788888888885 45433   246788888888887777777777888888888888877666666677777777777


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccC
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL  251 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~  251 (527)
                      ++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|+++.+|.                      
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------------  150 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----------------------  150 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----------------------
Confidence            7777776666667777777777777777777766777777777777777777766543                      


Q ss_pred             CccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       252 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                       ..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus       151 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          151 -GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             -TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             -hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence             3466778888888888888877777788899999999999999877777788899999999999988654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3.6e-25  Score=214.15  Aligned_cols=202  Identities=23%  Similarity=0.300  Sum_probs=169.4

Q ss_pred             ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCC
Q 035895           63 IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL  142 (527)
Q Consensus        63 ~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  142 (527)
                      ..+.++++++.++.++..++        ++|++|++++|++++..+..+..+. +|++|++++|.++...+..|..+++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--------~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--------ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--------TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCCCCCccCCCCC--------CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCC
Confidence            46789999999998766432        5799999999999987777787765 79999999999998888888999999


Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      ++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            99999999999888888999999999999999999888888999999999999999999888888999999999999999


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +++.+|..                       .|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus       168 ~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          168 QLKRVPEG-----------------------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCcEeChh-----------------------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            99887642                       2444556666666666666555555666666666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2.6e-25  Score=217.23  Aligned_cols=204  Identities=23%  Similarity=0.255  Sum_probs=169.2

Q ss_pred             CCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCC
Q 035895           87 MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL  166 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  166 (527)
                      +.++++++++++++|.++.+ |..+   ..+++.|+|++|.+++..+..|..+++|++|+|++|.+++..+.  +.+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            56778899999999999864 4433   34799999999999988888999999999999999999865443  788899


Q ss_pred             CEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCc
Q 035895          167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNL  246 (527)
Q Consensus       167 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~  246 (527)
                      +.|++++|+++ .+|..+..+++|++|++++|+|++..|..|.++++|++|+|++|+++.+|.                 
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------  141 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-----------------  141 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-----------------
Confidence            99999999987 677788888888999999998888777888888888888888888887653                 


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       247 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                            ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|++..
T Consensus       142 ------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          142 ------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence                  34566778888888888888766677888899999999999998 677777778889999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=4.3e-28  Score=252.94  Aligned_cols=321  Identities=18%  Similarity=0.194  Sum_probs=194.0

Q ss_pred             chhccc-CCCceeecCchh-hhcCCCCCEEEccccccccc----cc------cccceEEcccccccCCCCCCcccccCCC
Q 035895           22 RICTID-SQNKLVGIVSIT-IFNLSTLKVFDVDNNYVLGR----LS------SIVDELSLSDNYLTSSTPELSFLSSMSN   89 (527)
Q Consensus        22 ~~~~~~-s~N~l~~~~~~~-~~~l~~L~~L~Ls~N~~~~~----~~------~~l~~L~Ls~N~l~~~~~~~~~~~~~~~   89 (527)
                      ++..+| +.|+++...... +..+++|++|+|++|.+...    ++      +.++.|+|++|.++..... .+...+..
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-CVLQGLQT   82 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH-HHHHTTCS
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH-HHHHHHhh
Confidence            455666 777777655443 77788888888888876531    11      2467777777776542110 00011111


Q ss_pred             C-CCCCEEEcccCCCCc----ccChhHhhccccccEEEcccCccccccchhhc-----CCcCCcEEEeecCcccccC---
Q 035895           90 C-KYLKKLDISRNPLDG----FLPRVVGNFSQSLEFIWMSDCNISGGISEEIG-----NLTDLISIDLGGNKLNGSI---  156 (527)
Q Consensus        90 l-~~L~~L~Ls~N~l~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~---  156 (527)
                      . ++|++|++++|+++.    .++..+..+. +|+.|++++|.++...+..+.     ..++|++|++++|++++..   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence            1 157777777777763    3355555553 677777777777644333332     2456777777777776532   


Q ss_pred             -cccccCCCCCCEEeccCcccccccChhhh-----cCcccCeeeeecccCCCC----CCccccCCccCceeeCCCCCCCC
Q 035895          157 -SITLGKLQKLQFLSFRGNELEGSIPNVLC-----HLAVLFQLDLRGNKLSGS----IPTCFGNLTALRNLHLDSNELTS  226 (527)
Q Consensus       157 -~~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  226 (527)
                       +..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|.++..    ++..+..+++|++|++++|.++.
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             44455667777777777776644333333     245777777777777653    35556667777777777777664


Q ss_pred             C------chhhhCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCCCCCCChhhhhcC-----CCCCEEEcc
Q 035895          227 I------PSILWNLKDILYLDFWSNLFVGP----LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGL-----KSLQFLSLG  291 (527)
Q Consensus       227 l------p~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~  291 (527)
                      .      +.....++.|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+...     ++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            2      11222466777777777766643    45556667777777777777654444333322     577777777


Q ss_pred             cccceee----cCCCCCCCCCCCEEeCCCCcccccCccchhh-----hccCCeeEeeeeeee
Q 035895          292 HNRLQGS----IPNSFDDLVSLESLDLSNNNLSEIIPLSLEK-----LLYLNILLIVVVILA  344 (527)
Q Consensus       292 ~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-----l~~L~~L~~~~~~~~  344 (527)
                      +|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .+.|+.|+++.+.+.
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            7777643    3445556677777777777776655544443     456777776665543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.93  E-value=6.9e-26  Score=241.06  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=118.2

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey  433 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++..                             .+..++..++||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            46799999999999999999986 5799999998743                             12345677899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC--CcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN--IVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~--~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+||+|.+++......+++.++..|+.||+.||+|||   +++|+||||||+|||++.+  +.+||+|||+|+.+.... 
T Consensus       236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-  311 (573)
T 3uto_A          236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-  311 (573)
T ss_dssp             CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-
T ss_pred             cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-
Confidence            9999999999766567889999999999999999999   9999999999999999854  899999999999875432 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        .....+||+.||||
T Consensus       312 --~~~~~~GT~~y~AP  325 (573)
T 3uto_A          312 --SVKVTTGTAEFAAP  325 (573)
T ss_dssp             --EEEEECSSGGGCCH
T ss_pred             --ceeeeEECccccCH
Confidence              22345799999998

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.93  E-value=8.5e-26  Score=232.79  Aligned_cols=147  Identities=24%  Similarity=0.397  Sum_probs=124.1

Q ss_pred             HHHHhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCc
Q 035895          377 YQELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSN  423 (527)
Q Consensus       377 ~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~  423 (527)
                      +.++....++|++.++||+|+||+||+|+.. +++.||||++..                                .+..
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            3445566789999999999999999999975 578999999752                                1234


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ++..++|||||+||+|.+++...+..+++..+..++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla  222 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSC  222 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence            56778999999999999999876667899999999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +....... ...+..+||++||||
T Consensus       223 ~~~~~~~~-~~~~~~~GT~~Y~AP  245 (437)
T 4aw2_A          223 LKLMEDGT-VQSSVAVGTPDYISP  245 (437)
T ss_dssp             EECCTTSC-EECCSCCSCGGGCCH
T ss_pred             hhcccCCC-cccccccCCcCeeCh
Confidence            87653322 223345799999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.5e-25  Score=215.50  Aligned_cols=205  Identities=26%  Similarity=0.290  Sum_probs=131.3

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +|+.|++++|.++..  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            455555555555421  2345555566666666655542  245556666666666666655555555566666666666


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCC
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI  275 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  275 (527)
                      +|++++..+..|+.+++|++|++++|+++++|.. +..+++|+.|++++|.+.+..+..++.+++|++|++++|++.+..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            6666655555566666666666666666665443 345556666666666665555566777888888888888888777


Q ss_pred             hhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhcc
Q 035895          276 PTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLY  332 (527)
Q Consensus       276 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~  332 (527)
                      |..|..+++|++|++++|.+.+       .+++|+.|+++.|.++|.+|..++.+..
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            7778888888888888887763       3456888888888888888877665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=2.1e-25  Score=220.24  Aligned_cols=225  Identities=20%  Similarity=0.212  Sum_probs=187.2

Q ss_pred             CCCCEEEcccCCCCcccChh---HhhccccccEEEcccCccccccchhh--cCCcCCcEEEeecCcccccCc----cccc
Q 035895           91 KYLKKLDISRNPLDGFLPRV---VGNFSQSLEFIWMSDCNISGGISEEI--GNLTDLISIDLGGNKLNGSIS----ITLG  161 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~  161 (527)
                      ..++.|.+.++.++...-..   +... .+|++|++++|.+++..|..+  ..+++|++|+|++|++++..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35788888888876321111   1122 359999999999999988888  899999999999999987544    4456


Q ss_pred             CCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCC---CC-CccccCCccCceeeCCCCCCCCCchh----hhC
Q 035895          162 KLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSG---SI-PTCFGNLTALRNLHLDSNELTSIPSI----LWN  233 (527)
Q Consensus       162 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---~~-p~~~~~l~~L~~L~L~~N~l~~lp~~----~~~  233 (527)
                      .+++|++|++++|.+.+..|..|..+++|++|+|++|++.+   .. +..++.+++|++|++++|+++.+|..    +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            79999999999999998888999999999999999999865   22 33457899999999999999988763    467


Q ss_pred             CCCccEEEccCCcccccCCccccCC---CCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCC
Q 035895          234 LKDILYLDFWSNLFVGPLPSKIGNL---KVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLE  310 (527)
Q Consensus       234 l~~L~~l~l~~n~~~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  310 (527)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            8999999999999999888888777   69999999999998 5677664  7999999999999964 44 78889999


Q ss_pred             EEeCCCCcccc
Q 035895          311 SLDLSNNNLSE  321 (527)
Q Consensus       311 ~L~ls~N~l~~  321 (527)
                      .|++++|+++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=229.19  Aligned_cols=147  Identities=26%  Similarity=0.424  Sum_probs=123.5

Q ss_pred             HHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCc
Q 035895          377 YQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSN  423 (527)
Q Consensus       377 ~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~  423 (527)
                      ..+.....++|++.++||+|+||+||+|+. .+|+.||||++..                                .+..
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            344455678899999999999999999997 4789999999852                                1234


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ++..++||||++||+|.+++.+.+..+++..+..++.||+.||+|||   +++||||||||+|||++.++.+||+|||+|
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla  209 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSC  209 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhh
Confidence            45678999999999999999876667889899999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +....... ......+||++||||
T Consensus       210 ~~~~~~~~-~~~~~~~Gt~~Y~AP  232 (412)
T 2vd5_A          210 LKLRADGT-VRSLVAVGTPDYLSP  232 (412)
T ss_dssp             EECCTTSC-EECSSCCSCGGGCCH
T ss_pred             eeccCCCc-cccceeccccCcCCH
Confidence            87754322 122345789999998

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.92  E-value=1.7e-25  Score=226.10  Aligned_cols=143  Identities=21%  Similarity=0.268  Sum_probs=117.3

Q ss_pred             hhcCCccccceeccCCceEEEEEE------ccCCcEEEEEEEee-----------------------------ccCccce
Q 035895          382 RATDGFSANNLIGRGSFGSVYKAR------LQDGMEFAIKVFHF-----------------------------SCSNEDF  426 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~------~~~~~~vavK~~~~-----------------------------~~~~~~~  426 (527)
                      ...+.|.+.+.||+|+||+||+|.      ..+++.||||++..                             .+..++.
T Consensus        62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~  141 (365)
T 3e7e_A           62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNG  141 (365)
T ss_dssp             CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSC
T ss_pred             ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCC
Confidence            345679999999999999999994      45689999999742                             1223456


Q ss_pred             eEEEEEeccCCcHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-----------
Q 035895          427 RALVLEYTTNGSLEKVLYS----SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-----------  491 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----------  491 (527)
                      .++|||||++|+|.+++..    .+..+++..+..|+.|++.||+|||   +++||||||||+|||++.           
T Consensus       142 ~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~  218 (365)
T 3e7e_A          142 SVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDL  218 (365)
T ss_dssp             EEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------
T ss_pred             cEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccc
Confidence            7899999999999999975    2456899999999999999999999   999999999999999998           


Q ss_pred             CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+||+|||+|+.+.........+..+||++||||
T Consensus       219 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aP  254 (365)
T 3e7e_A          219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCV  254 (365)
T ss_dssp             CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCH
T ss_pred             cCCEEEeeCchhhhhhccCCCceeeeecCCCCCCCh
Confidence            899999999999765422222233456789999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=1.1e-24  Score=206.61  Aligned_cols=196  Identities=19%  Similarity=0.227  Sum_probs=126.7

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCc-cccccchhhcCCcCCcEEEeec-CcccccCcccccCCCCCCEE
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN-ISGGISEEIGNLTDLISIDLGG-NKLNGSISITLGKLQKLQFL  169 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L  169 (527)
                      +|++|++++|+++++.+..+..+. +|+.|++++|. ++.+.+..|..+++|++|++++ |++++..+..|..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            566777777777665555555543 57777777775 6666666677777777777776 77776666667777777777


Q ss_pred             eccCcccccccChhhhcCcccC---eeeeecc-cCCCCCCccccCCccCc-eeeCCCCCCCCCchhhhCCCCccEEEccC
Q 035895          170 SFRGNELEGSIPNVLCHLAVLF---QLDLRGN-KLSGSIPTCFGNLTALR-NLHLDSNELTSIPSILWNLKDILYLDFWS  244 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~lp~~~~~l~~L~~l~l~~  244 (527)
                      ++++|.+++ +|. |..+++|+   .|++++| ++++..+..|.++++|+ +|++++|+++.+|...+            
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~------------  176 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF------------  176 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc------------
Confidence            777777764 444 66666666   7777777 77666666677777777 77777777766654332            


Q ss_pred             CcccccCCccccCCCCCCEEEccCCC-CCCCChhhhhcC-CCCCEEEcccccceeecCCCCCCCCCCCEEeCCCC
Q 035895          245 NLFVGPLPSKIGNLKVLTRIDFSRNN-LLGDIPTTIQGL-KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN  317 (527)
Q Consensus       245 n~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N  317 (527)
                                 .. ++|++|++++|+ +.+..+..|.++ ++|++|++++|++++. |..  .+++|+.|+++++
T Consensus       177 -----------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          177 -----------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             -----------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             -----------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence                       22 456666666663 655555566666 6677777777776643 332  4556667776655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=8.9e-25  Score=211.59  Aligned_cols=210  Identities=20%  Similarity=0.239  Sum_probs=162.5

Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQ  167 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  167 (527)
                      ..+++|+.|++++|.++.. + .+..+ ++|++|++++|.+++.  +.+..+++|++|++++|++++..+..|..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~-~-~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV-Q-GIQYL-PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccc-c-ccccC-CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4566777777777777643 2 34444 3677777777777653  3677778888888888888777776777888888


Q ss_pred             EEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchh-hhCCCCccEEEccCCc
Q 035895          168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI-LWNLKDILYLDFWSNL  246 (527)
Q Consensus       168 ~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~l~l~~n~  246 (527)
                      +|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|++|++++|+++++|.. +..+++|+.|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            888888888776666777888888888888888877777778888888888888888877654 4667888888888888


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCC
Q 035895          247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSL  309 (527)
Q Consensus       247 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  309 (527)
                      +.+..|..+..+++|++|++++|.+.+.       +++|+.|+++.|.++|.+|..++.+...
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            8877777788999999999999988754       4478899999999999999998876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.8e-24  Score=209.98  Aligned_cols=203  Identities=22%  Similarity=0.207  Sum_probs=158.9

Q ss_pred             hcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCc
Q 035895          136 IGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALR  215 (527)
Q Consensus       136 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  215 (527)
                      +..+++++++++++|.++.. |..+  .++++.|++++|.+++..|..|..+++|+.|++++|.|++..+.  +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            44566667777777776643 3222  25677777777777766666777777777777777777654332  6677777


Q ss_pred             eeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccc
Q 035895          216 NLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL  295 (527)
Q Consensus       216 ~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (527)
                      +|++++|+++.+|..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+..|..+++|+.|+|++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            88888887777777777777788888888877777778899999999999999999988888899999999999999999


Q ss_pred             eeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeeeeee
Q 035895          296 QGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       296 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ++..+..|..+++|+.|+|++|+++. +|..+..+..|+.+.+..+.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence            98777788999999999999999985 5666677788999988877663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=5.9e-25  Score=208.57  Aligned_cols=196  Identities=18%  Similarity=0.194  Sum_probs=129.3

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCc-ccccCcccccCCCCCCEEeccC-cccccccChhhhcCcccCeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNK-LNGSISITLGKLQKLQFLSFRG-NELEGSIPNVLCHLAVLFQLD  194 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~  194 (527)
                      +|+.|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|+.|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555566666666666666664 5555555555666666666665 555544445555555555555


Q ss_pred             eecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCC-cccccCCccccCCCCCC-EEEccCCCCC
Q 035895          195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN-LFVGPLPSKIGNLKVLT-RIDFSRNNLL  272 (527)
Q Consensus       195 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n-~~~~~~p~~~~~l~~L~-~L~Ls~N~l~  272 (527)
                      +++|++++ +|. |..+++|+                    .|++|++++| .+.+..+..|..+++|+ +|++++|.+.
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            55555554 333 55555554                    0014444444 44444455678889999 9999999998


Q ss_pred             CCChhhhhcCCCCCEEEccccc-ceeecCCCCCCC-CCCCEEeCCCCcccccCccchhhhccCCeeEe
Q 035895          273 GDIPTTIQGLKSLQFLSLGHNR-LQGSIPNSFDDL-VSLESLDLSNNNLSEIIPLSLEKLLYLNILLI  338 (527)
Q Consensus       273 ~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~  338 (527)
                      ...+..|.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|+++++++..+.   .|+.|.+
T Consensus       170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~---~L~~L~l  233 (239)
T 2xwt_C          170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE---HLKELIA  233 (239)
T ss_dssp             EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT---TCSEEEC
T ss_pred             ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc---cCceeec
Confidence            544455555 899999999995 998888899999 9999999999999987666444   4444443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.91  E-value=7e-25  Score=224.24  Aligned_cols=144  Identities=26%  Similarity=0.420  Sum_probs=120.6

Q ss_pred             HHHhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCcc
Q 035895          378 QELLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNE  424 (527)
Q Consensus       378 ~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~  424 (527)
                      .++....++|++.++||+|+||+||+|+.. +++.||+|++..                                .+..+
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            344556788999999999999999999865 689999999742                                12345


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +..++|||||+||+|.+++...  .+++..+..++.||+.||+|||   +++|+||||||+|||++.++.+||+|||+|+
T Consensus       142 ~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~  216 (410)
T 3v8s_A          142 RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM  216 (410)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence            5678999999999999998753  4788888999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....... ......+||++||||
T Consensus       217 ~~~~~~~-~~~~~~~gt~~Y~AP  238 (410)
T 3v8s_A          217 KMNKEGM-VRCDTAVGTPDYISP  238 (410)
T ss_dssp             ECCTTSE-EECCSCCSCGGGCCH
T ss_pred             eeccCCc-ccccCCcCCccccCH
Confidence            7754321 122346799999998

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=217.78  Aligned_cols=139  Identities=32%  Similarity=0.424  Sum_probs=112.8

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------cCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------CSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~~~~~~~~  428 (527)
                      ..++|++.++||+|+||+||+|+. .+++.||||++...                                 +..++..+
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            457899999999999999999986 46899999997521                                 12345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|||||+||+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+|||++.++.+||+|||+|+....
T Consensus       101 lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~  176 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC  176 (353)
T ss_dssp             EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence            999999999999999764 35788899999999999999999   99999999999999999999999999999986432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  ......+||++||||
T Consensus       177 ~~--~~~~~~~gt~~y~aP  193 (353)
T 3txo_A          177 NG--VTTATFCGTPDYIAP  193 (353)
T ss_dssp             -----------CCGGGCCH
T ss_pred             CC--ccccccCCCcCeECh
Confidence            22  122345789999998

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.91  E-value=3.6e-24  Score=212.86  Aligned_cols=155  Identities=41%  Similarity=0.599  Sum_probs=128.5

Q ss_pred             cccccHHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------c
Q 035895          372 RRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------C  421 (527)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~  421 (527)
                      .+.++++++....++|+..+.||+|+||.||+|+.++++.||||++...                              +
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            3567888999999999999999999999999999888999999987431                              2


Q ss_pred             CccceeEEEEEeccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          422 SNEDFRALVLEYTTNGSLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       422 ~~~~~~~lv~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                      ..++..++||||+++|+|.+++....   ..+++..+..++.+++.||+|||..+..+|+||||||+||+++.++.+||+
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~  176 (326)
T 3uim_A           97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG  176 (326)
T ss_dssp             CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred             ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence            33456689999999999999997643   248899999999999999999993223399999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++....... .......||++|+||
T Consensus       177 Dfg~~~~~~~~~~-~~~~~~~gt~~y~aP  204 (326)
T 3uim_A          177 DFGLAKLMDYKDT-HVTTAVRGTIGHIAP  204 (326)
T ss_dssp             CCSSCEECCSSSS-CEECCCCSCGGGCCH
T ss_pred             cCccccccCcccc-cccccccCCcCccCH
Confidence            9999987753322 223345589999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.91  E-value=8.6e-24  Score=212.35  Aligned_cols=239  Identities=18%  Similarity=0.139  Sum_probs=147.5

Q ss_pred             EEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCcccccc-chhhcCCcCCcE-
Q 035895           67 LSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGI-SEEIGNLTDLIS-  144 (527)
Q Consensus        67 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~-  144 (527)
                      ++-++++|+++|..+        .+++++|+|++|+|+.+.+..|.++. +|++|+|++|.+.+.+ +..|.+++++.+ 
T Consensus        14 v~C~~~~Lt~iP~~l--------~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--------PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             EEEESTTCCSCCTTC--------CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             EEecCCCCCccCcCc--------CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            444555555554432        14567777777777765445565554 5777777777764433 445667766654 


Q ss_pred             EEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec-ccCCCCCCccccCCc-cCceeeCCCC
Q 035895          145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG-NKLSGSIPTCFGNLT-ALRNLHLDSN  222 (527)
Q Consensus       145 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N  222 (527)
                      +.++.|+++...+..|..+++|+.|++++|+++...+..+.....+..|++.+ |++....+..|..+. .++.|++++|
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            55566777777677777777777777777777766555666666677777754 566666666676664 4777888888


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccC-CccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPL-PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN  301 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  301 (527)
                      +|+.+|...+...+|+.+++++++..+.+ ++.|..+++|++||+++|+++...+..|.   +|+.|.+.++.-...+| 
T Consensus       165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-  240 (350)
T 4ay9_X          165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-  240 (350)
T ss_dssp             CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-
T ss_pred             cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-
Confidence            88777776666666777777643333333 34567777777777777777654443333   34444433332222455 


Q ss_pred             CCCCCCCCCEEeCCCCc
Q 035895          302 SFDDLVSLESLDLSNNN  318 (527)
Q Consensus       302 ~~~~l~~L~~L~ls~N~  318 (527)
                      .+..+++|+.++++++.
T Consensus       241 ~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          241 TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTTCCSCCEEECSCHH
T ss_pred             CchhCcChhhCcCCCCc
Confidence            36667777777776543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.91  E-value=3.5e-24  Score=217.90  Aligned_cols=139  Identities=29%  Similarity=0.370  Sum_probs=116.7

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~  428 (527)
                      ..++|++.++||+|+||+||+|+.+ +++.||||++...                                 +..++..+
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  129 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF  129 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence            4567999999999999999999864 6889999998531                                 12345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|||||+||+|..++... ..+++..+..++.||+.||+|||   +++|+||||||+|||++.++.+||+|||+|+....
T Consensus       130 lV~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             EEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEcCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence            999999999999998764 35788899999999999999999   99999999999999999999999999999986432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  .....+||+.||||
T Consensus       206 ~~~--~~~~~~gt~~Y~aP  222 (396)
T 4dc2_A          206 PGD--TTSTFCGTPNYIAP  222 (396)
T ss_dssp             TTC--CBCCCCBCGGGCCH
T ss_pred             CCC--ccccccCCcccCCc
Confidence            221  22346789999998

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.91  E-value=3.9e-24  Score=214.03  Aligned_cols=141  Identities=28%  Similarity=0.405  Sum_probs=116.8

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccce
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDF  426 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~  426 (527)
                      ....++|++.+.||+|+||.||+|+.+ +++.||||+++..                                 +..++.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            345688999999999999999999974 6899999998531                                 123456


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||++||+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+..
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  168 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN  168 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence            78999999999999999764 35788899999999999999999   999999999999999999999999999999865


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....  .....+||++|+||
T Consensus       169 ~~~~~--~~~~~~gt~~y~aP  187 (345)
T 1xjd_A          169 MLGDA--KTNTFCGTPDYIAP  187 (345)
T ss_dssp             CCTTC--CBCCCCSCGGGCCH
T ss_pred             ccCCC--cccCCCCCcccCCh
Confidence            32221  12345789999998

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.90  E-value=4.6e-24  Score=212.90  Aligned_cols=138  Identities=28%  Similarity=0.424  Sum_probs=116.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+.. +|+.||||+++.                                .+...+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            467999999999999999999864 689999999853                                12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++||+|.+++... ..++..++..++.||+.||+|||   +++|+||||||+||+++.++.+||+|||+|+......
T Consensus        84 ~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  159 (337)
T 1o6l_A           84 MEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             EeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence            9999999999998754 35788889999999999999999   9999999999999999999999999999998643222


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  .....+||+.||||
T Consensus       160 ~--~~~~~~gt~~y~aP  174 (337)
T 1o6l_A          160 A--TMKTFCGTPEYLAP  174 (337)
T ss_dssp             C--CBCCCEECGGGCCG
T ss_pred             C--cccccccChhhCCh
Confidence            1  22345789999998

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.90  E-value=2.3e-24  Score=213.82  Aligned_cols=152  Identities=39%  Similarity=0.614  Sum_probs=124.0

Q ss_pred             ccccHHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEee-----------------------------ccCc
Q 035895          373 RRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-----------------------------SCSN  423 (527)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-----------------------------~~~~  423 (527)
                      .++.+.++...+++|+..+.||+|+||.||+|+.++++.||||++..                             .+..
T Consensus        27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  106 (321)
T 2qkw_B           27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE  106 (321)
T ss_dssp             ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred             eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence            34445556678899999999999999999999998899999998642                             1234


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      ++..++||||+++|+|.+++....   ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+|++||
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCC
T ss_pred             CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeec
Confidence            456789999999999999886543   24789999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++...............||+.|+||
T Consensus       184 g~~~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2qkw_B          184 GISKKGTELDQTHLSTVVKGTLGYIDP  210 (321)
T ss_dssp             TTCEECSSSSCCCCBCCCEEETTTCCH
T ss_pred             ccccccccccccccccccCCCccccCH
Confidence            999875433222223345588999998

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.90  E-value=3.9e-24  Score=214.70  Aligned_cols=139  Identities=24%  Similarity=0.329  Sum_probs=116.3

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~  428 (527)
                      ..++|++.+.||+|+||.||+|+.. +++.||||++...                                 +..++..+
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            4678999999999999999999975 5789999997521                                 12345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++||+|.+++...+ .+++..+..++.||+.||+|||   +++|+||||||+||+++.++.+||+|||+|+....
T Consensus        98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  173 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  173 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence            9999999999999997643 5788899999999999999999   99999999999999999999999999999986432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  .....+||+.||||
T Consensus       174 ~~~--~~~~~~gt~~y~aP  190 (353)
T 2i0e_A          174 DGV--TTKTFCGTPDYIAP  190 (353)
T ss_dssp             TTC--CBCCCCSCGGGCCH
T ss_pred             CCc--ccccccCCccccCh
Confidence            221  22345789999998

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=3e-23  Score=198.37  Aligned_cols=179  Identities=27%  Similarity=0.317  Sum_probs=114.5

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      .+.++++++.++. +|..+.  +++++|+|++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4445555555442 222222  3455555555555555555555556666666666666555555556666666666666


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChh
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT  277 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  277 (527)
                      |++++..+..|..+++|++|+|++|+++.+|.                       ..|..+++|++|+|++|++.+..+.
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-----------------------GVFDRLTKLKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcCh-----------------------hHhccCCcccEEECcCCcCCccCHH
Confidence            66665555566666666666666666655442                       3355667777777777777766666


Q ss_pred             hhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          278 TIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       278 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                      .|..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777888888888888888877777788888888888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=3.2e-23  Score=204.33  Aligned_cols=191  Identities=23%  Similarity=0.352  Sum_probs=107.8

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|+.|++++|.+++.  +.+..+++|+.|+++
T Consensus        42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence            344444444444432 2 34445555555555555543332  45555555555555555432  235555555555555


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      +|++++. |. +..+++|++|++++|+++.++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+
T Consensus       116 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          116 STQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             TSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence            5555542 21 5555555555555555555544 4455555555555555544222  5667777777777777765433


Q ss_pred             hhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          277 TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                        +..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence              6777777777777777775443  67777777888877777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.3e-25  Score=228.69  Aligned_cols=238  Identities=20%  Similarity=0.217  Sum_probs=169.0

Q ss_pred             cCCCCCCCCEEEcccCCCCcccChh----HhhccccccEEEcccCc---cccccchhh-------cCCcCCcEEEeecCc
Q 035895           86 SMSNCKYLKKLDISRNPLDGFLPRV----VGNFSQSLEFIWMSDCN---ISGGISEEI-------GNLTDLISIDLGGNK  151 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~L~~N~  151 (527)
                      .+..+++|++|+|++|.++...+..    +..+ ++|++|+|++|.   +++.+|..+       ..+++|++|+|++|+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3455677777788777777653333    2233 367777777753   333444444       677888888888888


Q ss_pred             ccc----cCcccccCCCCCCEEeccCcccccccChh----hhcC---------cccCeeeeecccCC-CCCC---ccccC
Q 035895          152 LNG----SISITLGKLQKLQFLSFRGNELEGSIPNV----LCHL---------AVLFQLDLRGNKLS-GSIP---TCFGN  210 (527)
Q Consensus       152 l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l---------~~L~~L~L~~N~l~-~~~p---~~~~~  210 (527)
                      ++.    .++..+..+++|+.|+|++|.++...+..    +..+         ++|++|++++|+++ ...|   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            876    35666777888888888888886443333    3333         78888888888886 3344   35667


Q ss_pred             CccCceeeCCCCCCCC------CchhhhCCCCccEEEccCCccc----ccCCccccCCCCCCEEEccCCCCCCC----Ch
Q 035895          211 LTALRNLHLDSNELTS------IPSILWNLKDILYLDFWSNLFV----GPLPSKIGNLKVLTRIDFSRNNLLGD----IP  276 (527)
Q Consensus       211 l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~l~l~~n~~~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p  276 (527)
                      +++|++|++++|+++.      +|..+..+++|+.|++++|.+.    ..+|..+..+++|++|+|++|.+.+.    +|
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            7888888888888872      2336667788888888888875    56677788888888889988888765    45


Q ss_pred             hhhhc--CCCCCEEEccccccee----ecCCCC-CCCCCCCEEeCCCCcccccCc
Q 035895          277 TTIQG--LKSLQFLSLGHNRLQG----SIPNSF-DDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       277 ~~~~~--l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      ..+..  +++|++|+|++|.+++    .+|..+ ..+++|+.|++++|++++..+
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            66643  8889999999998886    366666 557888999999998887654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=213.77  Aligned_cols=136  Identities=29%  Similarity=0.335  Sum_probs=113.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|+..+.||+|+||+||+|+.. +++.||||++..                                .+...+..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            46999999999999999999875 789999998632                                123345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+ +|+|.+++...+..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++...... 
T Consensus       137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~-  211 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG-  211 (311)
T ss_dssp             ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred             ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-
Confidence            999 67999998877677899999999999999999999   8999999999999999999999999999998764332 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||++|+||
T Consensus       212 --~~~~~~gt~~y~aP  225 (311)
T 3p1a_A          212 --AGEVQEGDPRYMAP  225 (311)
T ss_dssp             -----CCCCCGGGCCG
T ss_pred             --CCcccCCCccccCH
Confidence              12334589999998

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.90  E-value=5.2e-24  Score=211.83  Aligned_cols=139  Identities=27%  Similarity=0.400  Sum_probs=118.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRAL  429 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~l  429 (527)
                      ...++|++.+.||+|+||.||+|+. .+|+.||||++...                               +..++..++
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   91 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL   91 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence            3467899999999999999999986 67999999997531                               223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...+ .++...+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+.....
T Consensus        92 v~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  167 (328)
T 3fe3_A           92 IMEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG  167 (328)
T ss_dssp             EECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred             EEECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence            999999999999987643 5788889999999999999999   999999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .   .....+||++|+||
T Consensus       168 ~---~~~~~~gt~~y~aP  182 (328)
T 3fe3_A          168 G---KLDAFCGAPPYAAP  182 (328)
T ss_dssp             C---GGGTTSSSGGGCCH
T ss_pred             C---ccccccCCcceeCc
Confidence            2   22345689999998

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.90  E-value=5.4e-24  Score=215.43  Aligned_cols=141  Identities=26%  Similarity=0.452  Sum_probs=115.4

Q ss_pred             cCCccccceeccCCceEEEEEEc--------cCCcEEEEEEEee-------------------------------ccCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL--------QDGMEFAIKVFHF-------------------------------SCSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~--------~~~~~vavK~~~~-------------------------------~~~~~  424 (527)
                      .++|++.+.||+|+||.||+|+.        .++..||||+++.                               .+..+
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            46789999999999999999975        2456799998742                               12344


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      +..++||||+++|+|.+++....               ..+++.++..++.||+.||+|||   +++|+||||||+||++
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll  236 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV  236 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence            56789999999999999997643               24788899999999999999999   9999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.++.+||+|||+|+...............+|+.||||
T Consensus       237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  274 (370)
T 2psq_A          237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  274 (370)
T ss_dssp             CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCH
T ss_pred             CCCCCEEEccccCCcccCcccceecccCCCcccceECH
Confidence            99999999999999976543322223344567889998

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=3.1e-25  Score=223.95  Aligned_cols=237  Identities=20%  Similarity=0.245  Sum_probs=136.7

Q ss_pred             CCCCEEEcccCCCCcccC----hhHhhccccccEEEcccCccccccchhhcCC-----cCCcEEEeecCcccccCccccc
Q 035895           91 KYLKKLDISRNPLDGFLP----RVVGNFSQSLEFIWMSDCNISGGISEEIGNL-----TDLISIDLGGNKLNGSISITLG  161 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~  161 (527)
                      ++|++|||++|.+++..+    ..+..+..+|+.|+|++|.++...+..+..+     ++|++|+|++|++++..+..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            335556666665554433    3333332245566666665555544444443     5566666666665544443222


Q ss_pred             ----CC-CCCCEEeccCcccccccChhhhc-----CcccCeeeeecccCCCCCC----ccccCCc-cCceeeCCCCCCCC
Q 035895          162 ----KL-QKLQFLSFRGNELEGSIPNVLCH-----LAVLFQLDLRGNKLSGSIP----TCFGNLT-ALRNLHLDSNELTS  226 (527)
Q Consensus       162 ----~l-~~L~~L~l~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~  226 (527)
                          .+ ++|+.|++++|.+++..+..+..     .++|++|+|++|.++...+    ..+..++ +|++|+|++|+++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence                22 55666666666665444333322     2356666666666653222    2233333 56666666666654


Q ss_pred             Cch-----hhhCC-CCccEEEccCCccccc----CCccccC-CCCCCEEEccCCCCCCCChh----hhhcCCCCCEEEcc
Q 035895          227 IPS-----ILWNL-KDILYLDFWSNLFVGP----LPSKIGN-LKVLTRIDFSRNNLLGDIPT----TIQGLKSLQFLSLG  291 (527)
Q Consensus       227 lp~-----~~~~l-~~L~~l~l~~n~~~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~  291 (527)
                      .+.     .+... ++|++|++++|.+...    ++..+.. .++|++|+|++|.+.+..+.    .+..+++|++|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            321     22233 3666666666665542    3344444 35888899999988876553    34667889999999


Q ss_pred             ccccee-------ecCCCCCCCCCCCEEeCCCCcccccCccch
Q 035895          292 HNRLQG-------SIPNSFDDLVSLESLDLSNNNLSEIIPLSL  327 (527)
Q Consensus       292 ~N~l~~-------~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~  327 (527)
                      +|.+.+       .++..+..+++|+.||+++|++.+..+..+
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            998432       345678888999999999999887654433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=4.7e-25  Score=222.65  Aligned_cols=249  Identities=18%  Similarity=0.188  Sum_probs=199.2

Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccc----hhhcCCc-CCcEEEeecCcccccCcccccCC-----C
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGIS----EEIGNLT-DLISIDLGGNKLNGSISITLGKL-----Q  164 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~  164 (527)
                      .++++.|.+++.+|..+. ..++|+.|+|++|.++...+    ..+..++ +|++|+|++|++++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            468999999998777654 44579999999999998777    7888898 99999999999998777777765     9


Q ss_pred             CCCEEeccCcccccccChhhhc----C-cccCeeeeecccCCCCCCcccc----C-CccCceeeCCCCCCCC-----Cch
Q 035895          165 KLQFLSFRGNELEGSIPNVLCH----L-AVLFQLDLRGNKLSGSIPTCFG----N-LTALRNLHLDSNELTS-----IPS  229 (527)
Q Consensus       165 ~L~~L~l~~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~-----lp~  229 (527)
                      +|+.|++++|.+++..+..+..    + ++|+.|++++|++++..+..+.    . .++|++|+|++|.++.     ++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999999999777665444    4 8999999999999877765543    3 3699999999999984     455


Q ss_pred             hhhCCC-CccEEEccCCcccccCCcccc----CC-CCCCEEEccCCCCCCC----Chhhhhc-CCCCCEEEcccccceee
Q 035895          230 ILWNLK-DILYLDFWSNLFVGPLPSKIG----NL-KVLTRIDFSRNNLLGD----IPTTIQG-LKSLQFLSLGHNRLQGS  298 (527)
Q Consensus       230 ~~~~l~-~L~~l~l~~n~~~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~  298 (527)
                      .+...+ +|++|++++|.+.+..+..+.    .+ ++|++|+|++|.+.+.    ++..+.. .++|++|+|++|++++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            556665 999999999999877765444    44 5999999999999863    4556666 45999999999999864


Q ss_pred             cC----CCCCCCCCCCEEeCCCCcccccCcc-------chhhhccCCeeEeeeeeee
Q 035895          299 IP----NSFDDLVSLESLDLSNNNLSEIIPL-------SLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       299 ~p----~~~~~l~~L~~L~ls~N~l~~~~p~-------~~~~l~~L~~L~~~~~~~~  344 (527)
                      .+    ..+..+++|+.|++++|.+.++.+.       .+..+..|+.|+++.+.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            33    4567889999999999997665543       4556667777777766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=3.8e-25  Score=220.80  Aligned_cols=229  Identities=16%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccc-cchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG-ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      .++.|++++|.+.+..+.. ..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|+.|+
T Consensus        71 ~l~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEH-FSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCCSC-CCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccchhh-ccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3444444444444433322 122 2344444444444433 344444455555555555555444444444555555555


Q ss_pred             ccCc-cccc-ccChhhhcCcccCeeeeecc-cCCCC-CCccccCCc-cCceeeCCCC--CCC--CCchhhhCCCCccEEE
Q 035895          171 FRGN-ELEG-SIPNVLCHLAVLFQLDLRGN-KLSGS-IPTCFGNLT-ALRNLHLDSN--ELT--SIPSILWNLKDILYLD  241 (527)
Q Consensus       171 l~~N-~l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~--~lp~~~~~l~~L~~l~  241 (527)
                      +++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +|++|++++|  .++  .+|..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            5555 3433 13444445555555555555 44432 234444555 5555555555  232  2444444455555555


Q ss_pred             ccCCc-ccccCCccccCCCCCCEEEccCCCCCCCChh---hhhcCCCCCEEEcccccceeecCCCCCCCC-CCCEEeCCC
Q 035895          242 FWSNL-FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT---TIQGLKSLQFLSLGHNRLQGSIPNSFDDLV-SLESLDLSN  316 (527)
Q Consensus       242 l~~n~-~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~ls~  316 (527)
                      +++|. +++..+..+..+++|++|++++|.  +..+.   .+..+++|++|++++| ++   ...+..+. .++.|++++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINC  302 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEec
Confidence            55555 344444455555666666666654  12222   3555666666666655 21   11222221 244555566


Q ss_pred             CcccccCccchh
Q 035895          317 NNLSEIIPLSLE  328 (527)
Q Consensus       317 N~l~~~~p~~~~  328 (527)
                      |++++..|..+.
T Consensus       303 n~l~~~~~~~~~  314 (336)
T 2ast_B          303 SHFTTIARPTIG  314 (336)
T ss_dssp             CCSCCTTCSSCS
T ss_pred             ccCccccCCccc
Confidence            666665555443

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.90  E-value=9.3e-24  Score=209.61  Aligned_cols=140  Identities=27%  Similarity=0.407  Sum_probs=115.8

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCc----cceeEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSN----EDFRAL  429 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~----~~~~~l  429 (527)
                      ...++|++.+.||+|+||.||+|+.. ++.||||++...                            +..    ....++
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           21 FQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             ETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            34567999999999999999999876 789999997421                            011    123589


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC----------CeEecCCCCCCeeeCCCCcEEEee
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST----------PIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~----------~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                      ||||+++|+|.+++...  .+++..+..++.|++.||+|||   +.          +|+||||||+||+++.++.+||+|
T Consensus       100 v~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~D  174 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD  174 (322)
T ss_dssp             EEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECC
T ss_pred             EEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEcc
Confidence            99999999999999764  4789999999999999999999   77          999999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|+...............||+.|+||
T Consensus       175 Fg~a~~~~~~~~~~~~~~~~gt~~y~aP  202 (322)
T 3soc_A          175 FGLALKFEAGKSAGDTHGQVGTRRYMAP  202 (322)
T ss_dssp             CTTCEEECTTSCCCCCTTCCCCGGGCCH
T ss_pred             CCcccccccccCccccccCccCccccCH
Confidence            9999877544332233345689999998

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.90  E-value=9e-24  Score=213.58  Aligned_cols=139  Identities=32%  Similarity=0.425  Sum_probs=115.3

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~  428 (527)
                      ..++|++.+.||+|+||.||+|+.+ +++.||||+++..                                 +..++..+
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~  115 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY  115 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence            3467999999999999999999875 5889999987421                                 12334668


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||++||+|.+++...+ .++...+..++.+|+.||+|||   +++|+||||||+||+++.++.+||+|||+++....
T Consensus       116 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          116 FVLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred             EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence            9999999999999997643 5778888899999999999999   99999999999999999999999999999986432


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  .....+||+.||||
T Consensus       192 ~~~--~~~~~~gt~~y~aP  208 (373)
T 2r5t_A          192 HNS--TTSTFCGTPEYLAP  208 (373)
T ss_dssp             CCC--CCCSBSCCCCCCCH
T ss_pred             CCC--ccccccCCccccCH
Confidence            221  22345789999998

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.90  E-value=1.3e-23  Score=208.02  Aligned_cols=135  Identities=33%  Similarity=0.438  Sum_probs=115.6

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|++...                                +..++..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            467999999999999999999864 7899999997521                                2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++||+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++..... 
T Consensus        85 ~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-  159 (318)
T 1fot_A           85 MDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-  159 (318)
T ss_dssp             ECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred             EeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence            9999999999999764 35788888999999999999999   999999999999999999999999999999876432 


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                          ....+||+.||||
T Consensus       160 ----~~~~~gt~~y~aP  172 (318)
T 1fot_A          160 ----TYTLCGTPDYIAP  172 (318)
T ss_dssp             ----BCCCCSCTTTCCH
T ss_pred             ----cccccCCccccCH
Confidence                1235689999998

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=206.24  Aligned_cols=141  Identities=27%  Similarity=0.440  Sum_probs=116.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey  433 (527)
                      .++|++.+.||+|+||+||+|+. .+++.||+|++..                             .+..++..++||||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            46789999999999999999986 4689999998632                             12334567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++......+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.........
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (310)
T 3s95_A           89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP  165 (310)
T ss_dssp             CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred             cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence            9999999999876677899999999999999999999   9999999999999999999999999999998764332111


Q ss_pred             c------------eeccccccccccC
Q 035895          514 T------------QTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~------------~~~~~~t~~y~aP  527 (527)
                      .            .....||++|+||
T Consensus       166 ~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (310)
T 3s95_A          166 EGLRSLKKPDRKKRYTVVGNPYWMAP  191 (310)
T ss_dssp             --------------CCCCSCGGGCCH
T ss_pred             cccccccccccccccccCCCcceeCH
Confidence            0            1134689999998

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.90  E-value=1.9e-23  Score=204.88  Aligned_cols=137  Identities=31%  Similarity=0.449  Sum_probs=116.1

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey  433 (527)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++...                             +..++..++||||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            35799999999999999999985 67899999997531                             2234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++...  .+++.+...++.+++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  
T Consensus        99 ~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--  171 (297)
T 3fxz_A           99 LAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--  171 (297)
T ss_dssp             CTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred             CCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--
Confidence            9999999999754  5788899999999999999999   89999999999999999999999999999987654322  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......||+.|+||
T Consensus       172 ~~~~~~gt~~y~aP  185 (297)
T 3fxz_A          172 KRSTMVGTPYWMAP  185 (297)
T ss_dssp             CBCCCCSCGGGCCH
T ss_pred             ccCCccCCcCccCh
Confidence            22345689999998

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.90  E-value=1.2e-23  Score=210.61  Aligned_cols=138  Identities=30%  Similarity=0.372  Sum_probs=115.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------cCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------CSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                                 +..++..++
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            467999999999999999999964 6899999998531                                 123456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||++||+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+.....
T Consensus        88 v~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~  163 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP  163 (345)
T ss_dssp             EECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred             EEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence            99999999999998754 35788899999999999999999   999999999999999999999999999999864322


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  .....+||+.|+||
T Consensus       164 ~~--~~~~~~gt~~y~aP  179 (345)
T 3a8x_A          164 GD--TTSTFCGTPNYIAP  179 (345)
T ss_dssp             TC--CBCCCCSCGGGCCH
T ss_pred             CC--cccccCCCccccCc
Confidence            21  22345789999998

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.90  E-value=7.4e-24  Score=215.04  Aligned_cols=142  Identities=26%  Similarity=0.412  Sum_probs=116.7

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccceeEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~~~~lv~  431 (527)
                      ..++|++.+.||+|+||.||+|+.. +++.||||+++.                              .+..++..++||
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            3467889999999999999999975 789999998742                              123345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++|+|.+++...+..+++.+...++.|++.||+|||   +++|+||||||+||++++++.+||+|||+|+.......
T Consensus       192 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~  268 (377)
T 3cbl_A          192 ELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY  268 (377)
T ss_dssp             ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred             EcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence            999999999999876667899999999999999999999   99999999999999999999999999999987543211


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ........+++.|+||
T Consensus       269 ~~~~~~~~~~~~y~aP  284 (377)
T 3cbl_A          269 AASGGLRQVPVKWTAP  284 (377)
T ss_dssp             ECCSSCCEEEGGGSCH
T ss_pred             eecCCCCCCCcCcCCH
Confidence            1111122357789998

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=208.07  Aligned_cols=139  Identities=37%  Similarity=0.564  Sum_probs=112.8

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+. +++.||||++...                                 .......++
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l   89 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL   89 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred             ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence            457899999999999999999976 6789999997421                                 111224579


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC---------CeEecCCCCCCeeeCCCCcEEEeec
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST---------PIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~---------~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                      ||||+++|+|.+++....  .++.....++.|++.||+|||   +.         +|+||||||+||+++.++.+||+||
T Consensus        90 v~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DF  164 (336)
T 3g2f_A           90 VMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF  164 (336)
T ss_dssp             EECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCC
T ss_pred             EEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEEEeec
Confidence            999999999999997543  478888999999999999999   77         9999999999999999999999999


Q ss_pred             ccccccCCCCC------ccceeccccccccccC
Q 035895          501 GIAKLLTGEDQ------SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~------~~~~~~~~~t~~y~aP  527 (527)
                      |+|+.+.....      ........||+.|+||
T Consensus       165 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (336)
T 3g2f_A          165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAP  197 (336)
T ss_dssp             TTCEECSSSSCC---------CCTTSCGGGCCH
T ss_pred             cceeecccccccCccccccccccCCCccceeCc
Confidence            99987653221      1112234689999998

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.90  E-value=1.7e-23  Score=227.39  Aligned_cols=140  Identities=24%  Similarity=0.321  Sum_probs=117.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee---------------------------------ccCcccee
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF---------------------------------SCSNEDFR  427 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~---------------------------------~~~~~~~~  427 (527)
                      ...++|++.++||+|+||.||+|+.. +++.||||++..                                 .....+..
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            34678999999999999999999864 688999999752                                 12234567


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||++||+|.+++...+ .+++..+..|+.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+...
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~  493 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  493 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred             EEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence            89999999999999997653 5788899999999999999999   9999999999999999999999999999998643


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  .....+||++||||
T Consensus       494 ~~~~--~~~~~~GT~~Y~AP  511 (674)
T 3pfq_A          494 WDGV--TTKTFCGTPDYIAP  511 (674)
T ss_dssp             CTTC--CBCCCCSCSSSCCH
T ss_pred             cCCc--ccccccCCCcccCH
Confidence            2221  22346799999998

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=212.68  Aligned_cols=137  Identities=31%  Similarity=0.439  Sum_probs=116.7

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||+|++..                                .+..++..++|
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            46799999999999999999986 4688999998742                                12344567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++||+|.+++... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+.+....
T Consensus        94 ~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  169 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQN-VHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET  169 (384)
T ss_dssp             ECCCTTEEHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence            9999999999999754 45788899999999999999999   9999999999999999999999999999999775332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                         .....+||++||||
T Consensus       170 ---~~~~~~gt~~Y~aP  183 (384)
T 4fr4_A          170 ---QITTMAGTKPYMAP  183 (384)
T ss_dssp             ---CBCCCCSCGGGCCG
T ss_pred             ---ceeccCCCccccCC
Confidence               22345789999998

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=207.99  Aligned_cols=141  Identities=29%  Similarity=0.493  Sum_probs=114.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec------------------------------cCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS------------------------------CSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~------------------------------~~~~~~~~l  429 (527)
                      .+.|++.+.||+|+||.||+|+..    .+..||||++...                              +...+..++
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            356889999999999999999874    3456999997531                              233456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++.++..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  204 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD  204 (325)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred             EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence            99999999999999876667899999999999999999999   999999999999999999999999999999987543


Q ss_pred             CCc-cceeccccccccccC
Q 035895          510 DQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-~~~~~~~~t~~y~aP  527 (527)
                      ... .......+|+.|+||
T Consensus       205 ~~~~~~~~~~~~t~~y~aP  223 (325)
T 3kul_A          205 PDAAYTTTGGKIPIRWTAP  223 (325)
T ss_dssp             --CCEECC---CCGGGSCH
T ss_pred             ccceeeccCCCCcccccCH
Confidence            221 222234467789998

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.89  E-value=1.8e-23  Score=209.85  Aligned_cols=135  Identities=28%  Similarity=0.413  Sum_probs=115.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++..                                .+..++..++|
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            467999999999999999999864 689999999742                                12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++||+|.+++...+ .++...+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++......
T Consensus       120 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~  195 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT  195 (350)
T ss_dssp             EECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB
T ss_pred             EcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCCc
Confidence            99999999999997643 5788889999999999999999   9999999999999999999999999999999764321


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                           ...+||+.|+||
T Consensus       196 -----~~~~gt~~y~aP  207 (350)
T 1rdq_E          196 -----WTLCGTPEALAP  207 (350)
T ss_dssp             -----CCCEECGGGCCH
T ss_pred             -----ccccCCccccCH
Confidence                 235689999998

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.89  E-value=7.2e-24  Score=210.47  Aligned_cols=140  Identities=24%  Similarity=0.396  Sum_probs=116.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee------------------------------ccCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~------------------------------~~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||+||+|+.. +++.||||++..                              .+..++..++|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            478999999999999999999865 789999998742                              1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++|+|.+++... ..+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.+......
T Consensus        86 ~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  161 (323)
T 3tki_A           86 YCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  161 (323)
T ss_dssp             CCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             cCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence            99999999988643 45789999999999999999999   999999999999999999999999999999876433222


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......||+.|+||
T Consensus       162 ~~~~~~~gt~~y~aP  176 (323)
T 3tki_A          162 RLLNKMCGTLPYVAP  176 (323)
T ss_dssp             CCBCSCCSCGGGSCH
T ss_pred             cccCCCccCcCccCc
Confidence            222345689999998

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.89  E-value=2.4e-23  Score=206.50  Aligned_cols=148  Identities=25%  Similarity=0.330  Sum_probs=120.4

Q ss_pred             ccccHHHHhhhcCC----------ccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------
Q 035895          373 RRFSYQELLRATDG----------FSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------  420 (527)
Q Consensus       373 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------  420 (527)
                      ..++++++..+++.          |+..+.||+|+||.||+|+.. +|+.||||++...                     
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            45666666655543          677789999999999999975 7999999997531                     


Q ss_pred             --------cCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC
Q 035895          421 --------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN  492 (527)
Q Consensus       421 --------~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~  492 (527)
                              +...+..++||||+++|+|.+++..  ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.+
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~  177 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLD  177 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTT
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCC
Confidence                    2234567899999999999999854  35889999999999999999999   8999999999999999999


Q ss_pred             CcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          493 IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       493 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.+||+|||+++.......  ......||++|+||
T Consensus       178 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  210 (321)
T 2c30_A          178 GRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAP  210 (321)
T ss_dssp             CCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCH
T ss_pred             CcEEEeeeeeeeecccCcc--ccccccCCccccCH
Confidence            9999999999987654321  22345689999998

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=220.74  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=172.8

Q ss_pred             CchhhhcCCCCCEEEccccccccccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCC---CCcccChhH-
Q 035895           36 VSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNP---LDGFLPRVV-  111 (527)
Q Consensus        36 ~~~~~~~l~~L~~L~Ls~N~~~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~-  111 (527)
                      .+.++..+++|+.|+|++|.+....+..+                   ...+..+++|++|+|++|.   +++.+|..+ 
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~   84 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWL-------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEALR   84 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHH-------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHH-------------------HHHHHhCCCccEEeCcccccCccccchhHHHH
Confidence            34566777888888888886654322110                   1135566778888887753   334444444 


Q ss_pred             ------hhccccccEEEcccCcccc----ccchhhcCCcCCcEEEeecCcccccCccccc----CC---------CCCCE
Q 035895          112 ------GNFSQSLEFIWMSDCNISG----GISEEIGNLTDLISIDLGGNKLNGSISITLG----KL---------QKLQF  168 (527)
Q Consensus       112 ------~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~  168 (527)
                            ..+ ++|++|+|++|.++.    .+|..+..+++|++|+|++|.++...+..+.    .+         ++|+.
T Consensus        85 ~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A           85 LLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             HHHHHHTTC-TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHHHhhC-CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence                  333 468888888888776    4666777788888888888887644333333    33         78888


Q ss_pred             EeccCcccc-cccC---hhhhcCcccCeeeeecccCCC-----CCCccccCCccCceeeCCCCCC-----CCCchhhhCC
Q 035895          169 LSFRGNELE-GSIP---NVLCHLAVLFQLDLRGNKLSG-----SIPTCFGNLTALRNLHLDSNEL-----TSIPSILWNL  234 (527)
Q Consensus       169 L~l~~N~l~-~~~p---~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l-----~~lp~~~~~l  234 (527)
                      |++++|+++ +.+|   ..+..+++|+.|++++|+++.     ..|..+..+++|++|+|++|.+     ..+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            888888886 3344   456678888888888888862     3444778888888888888888     3467777888


Q ss_pred             CCccEEEccCCccccc----CCccc--cCCCCCCEEEccCCCCCC----CChhhh-hcCCCCCEEEcccccceee
Q 035895          235 KDILYLDFWSNLFVGP----LPSKI--GNLKVLTRIDFSRNNLLG----DIPTTI-QGLKSLQFLSLGHNRLQGS  298 (527)
Q Consensus       235 ~~L~~l~l~~n~~~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~  298 (527)
                      ++|+.|++++|.+.+.    +|..+  +.+++|++|+|++|.+.+    .+|..+ .++++|++|++++|++++.
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            8888888888887755    45566  348999999999999987    477777 6789999999999998754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=8.5e-23  Score=201.25  Aligned_cols=194  Identities=19%  Similarity=0.269  Sum_probs=152.2

Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCC
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQ  167 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  167 (527)
                      ..+++|++|++++|.++.+ | .+..+ ++|+.|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            4567788888888887753 3 35554 368888888888876544  77888888888888888754  2577888888


Q ss_pred             EEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcc
Q 035895          168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLF  247 (527)
Q Consensus       168 ~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~  247 (527)
                      .|++++|.+++. +. +..+++|+.|++++|++++..+  +..+++|+.|++++|+++.++. +..+++|+.|++++|.+
T Consensus       111 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          111 TLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            888888888753 33 7888888888888888876544  7788888888888888888776 77788888888888888


Q ss_pred             cccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee
Q 035895          248 VGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       248 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (527)
                      .+..+  +..+++|++|++++|++.+..  .+..+++|+.|++++|++++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            76543  788999999999999998654  38999999999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.4e-22  Score=193.67  Aligned_cols=178  Identities=25%  Similarity=0.285  Sum_probs=117.2

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      ..++++++++.++. +|..+   ..+++.|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccc-cCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45666777776664 33332   235777777777777766777777777777777777777777777777777888888


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEEccCCccccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      ++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+++.+|. .+..+++|+.|++++|.+.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            8777776666777777888888888888877777777778888888888887777654 233344444444444444433


Q ss_pred             CCccccCCCCCCEEEccCCCCCC
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLG  273 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~  273 (527)
                      .+..+..+++|++|++++|.+..
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeC
Confidence            33444445555555555555543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.89  E-value=2.1e-23  Score=220.44  Aligned_cols=139  Identities=29%  Similarity=0.454  Sum_probs=117.9

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      ..++|++.++||+|+||.||+|+.. +|+.||||++..                                .+..++..++
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  261 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL  261 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence            3467999999999999999999864 799999999742                                1234456789


Q ss_pred             EEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||||++||+|.+++...+ ..+++..+..++.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+....
T Consensus       262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence            999999999999997653 34889999999999999999999   89999999999999999999999999999987753


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   .....+||++||||
T Consensus       339 ~~---~~~~~~GT~~Y~AP  354 (576)
T 2acx_A          339 GQ---TIKGRVGTVGYMAP  354 (576)
T ss_dssp             TC---CEECCCSCGGGCCH
T ss_pred             Cc---cccccCCCccccCH
Confidence            32   22345789999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=207.15  Aligned_cols=222  Identities=16%  Similarity=0.134  Sum_probs=183.3

Q ss_pred             cccEEEcccCccccccc---hhhcCCcCCcEEEeecCcccccCcccc--cCCCCCCEEeccCcccccccC----hhhhcC
Q 035895          117 SLEFIWMSDCNISGGIS---EEIGNLTDLISIDLGGNKLNGSISITL--GKLQKLQFLSFRGNELEGSIP----NVLCHL  187 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~p----~~~~~l  187 (527)
                      .++.+.+.++.++...-   ..+..+++|++|++++|.+++..|..+  ..+++|+.|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            47888888887753211   112345679999999999999888888  899999999999999997655    345679


Q ss_pred             cccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC---Cchh--hhCCCCccEEEccCCcccccC--Cc-cccCCC
Q 035895          188 AVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS---IPSI--LWNLKDILYLDFWSNLFVGPL--PS-KIGNLK  259 (527)
Q Consensus       188 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---lp~~--~~~l~~L~~l~l~~n~~~~~~--p~-~~~~l~  259 (527)
                      ++|++|++++|++.+..|..|+.+++|++|+|++|++.+   ++..  +..+++|++|++++|.+....  +. .++.++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999875   4333  357899999999999986321  11 357889


Q ss_pred             CCCEEEccCCCCCCCChhhhhcC---CCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCee
Q 035895          260 VLTRIDFSRNNLLGDIPTTIQGL---KSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL  336 (527)
Q Consensus       260 ~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  336 (527)
                      +|++|+|++|++.+..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|+++++ |. +..++.|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            99999999999998888887776   69999999999999 6677764  7999999999999986 33 6778889999


Q ss_pred             Eeeeeee
Q 035895          337 LIVVVIL  343 (527)
Q Consensus       337 ~~~~~~~  343 (527)
                      +++.+.+
T Consensus       300 ~L~~N~l  306 (310)
T 4glp_A          300 TLDGNPF  306 (310)
T ss_dssp             ECSSTTT
T ss_pred             ECcCCCC
Confidence            8877654

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.89  E-value=2.5e-23  Score=200.67  Aligned_cols=141  Identities=28%  Similarity=0.430  Sum_probs=119.1

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      ..++|++.+.||+|+||.||+|+.+++..||+|++...                            +..++..++||||+
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            34679999999999999999999988889999997531                            23445678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++...+..+++.++..++.|++.|++|||   +.+|+||||||+||+++.++.+||+|||+++....... ..
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~  161 (268)
T 3sxs_A           86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-VS  161 (268)
T ss_dssp             TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-EE
T ss_pred             CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhh-hc
Confidence            999999999876666899999999999999999999   89999999999999999999999999999987654321 22


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....+|+.|+||
T Consensus       162 ~~~~~~~~~y~aP  174 (268)
T 3sxs_A          162 SVGTKFPVKWSAP  174 (268)
T ss_dssp             CCSCCCCGGGCCH
T ss_pred             ccCCCcCcccCCH
Confidence            2334467789998

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.89  E-value=1.2e-23  Score=211.86  Aligned_cols=150  Identities=24%  Similarity=0.401  Sum_probs=120.6

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec----------------------------
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS----------------------------  420 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~----------------------------  420 (527)
                      +....+....+.|++.+.||+|+||.||+|++      .+++.||||++...                            
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            44556666778899999999999999999973      35689999997431                            


Q ss_pred             ---cCc-cceeEEEEEeccCCcHHHHHHhcCC------------------------------------------------
Q 035895          421 ---CSN-EDFRALVLEYTTNGSLEKVLYSSNY------------------------------------------------  448 (527)
Q Consensus       421 ---~~~-~~~~~lv~ey~~~g~L~~~l~~~~~------------------------------------------------  448 (527)
                         +.. ....++|||||++|+|.+++.....                                                
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence               112 2347899999999999999976432                                                


Q ss_pred             -----------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          449 -----------------ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       449 -----------------~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                                       .+++.....++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~  248 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD  248 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence                             1788889999999999999999   99999999999999999999999999999987654433


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ........+|++||||
T Consensus       249 ~~~~~~~~~t~~y~aP  264 (359)
T 3vhe_A          249 YVRKGDARLPLKWMAP  264 (359)
T ss_dssp             CEEC--CEECGGGCCH
T ss_pred             chhccccCCCceeECh
Confidence            3333445678899998

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.89  E-value=3.5e-23  Score=204.39  Aligned_cols=138  Identities=28%  Similarity=0.417  Sum_probs=115.5

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      .+.|++.+.||+|+||+||+|+..+|+.||+|++...                               +..++..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            4679999999999999999999988999999987421                               233456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ +|.+.+......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+....... 
T Consensus       100 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~-  174 (311)
T 3niz_A          100 FMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR-  174 (311)
T ss_dssp             CCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred             CCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc-
Confidence            9985 888888776667899999999999999999999   99999999999999999999999999999987643222 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ..+...+|++|+||
T Consensus       175 -~~~~~~~t~~y~aP  188 (311)
T 3niz_A          175 -SYTHEVVTLWYRAP  188 (311)
T ss_dssp             ----CCCCCCTTCCH
T ss_pred             -cccCCcccCCcCCH
Confidence             22334678999998

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.89  E-value=8.3e-23  Score=201.12  Aligned_cols=152  Identities=33%  Similarity=0.482  Sum_probs=125.7

Q ss_pred             cccccHHHHhhhcCCcccc------ceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------
Q 035895          372 RRRFSYQELLRATDGFSAN------NLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------  420 (527)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------  420 (527)
                      ...+++.++..++..|...      +.||+|+||.||+|+. +++.||||++...                         
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            3567888999999888776      8999999999999997 5789999987431                         


Q ss_pred             --------cCccceeEEEEEeccCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          421 --------CSNEDFRALVLEYTTNGSLEKVLYSS--NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       421 --------~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                              +...+..++||||+++|+|.+++...  ...+++..+..++.+++.||+|||   +++|+||||||+||+++
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~  167 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLD  167 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEc
Confidence                    12334568999999999999998743  245889999999999999999999   89999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.+|++|||+++...............||+.|+||
T Consensus       168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aP  204 (307)
T 2nru_A          168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAP  204 (307)
T ss_dssp             TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCH
T ss_pred             CCCcEEEeecccccccccccccccccccCCCcCcCCh
Confidence            9999999999999876543322223345689999998

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=4.1e-23  Score=204.77  Aligned_cols=138  Identities=22%  Similarity=0.357  Sum_probs=117.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~  434 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||+|++..                            .+...+..++|||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence            467999999999999999999864 688999998742                            123345778999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCCc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +||+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||+++.  ++.+|++|||+++......  
T Consensus        84 ~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~--  158 (321)
T 1tki_A           84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD--  158 (321)
T ss_dssp             CCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC--
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC--
Confidence            999999999766667899999999999999999999   999999999999999986  7899999999999875432  


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......+|++|+||
T Consensus       159 -~~~~~~gt~~y~aP  172 (321)
T 1tki_A          159 -NFRLLFTAPEYYAP  172 (321)
T ss_dssp             -EEEEEESCGGGSCH
T ss_pred             -ccccccCChhhcCc
Confidence             22335688999998

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.89  E-value=2e-23  Score=201.60  Aligned_cols=140  Identities=26%  Similarity=0.405  Sum_probs=117.9

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|+..+++.||+|++..                            .+..++..++||||++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            467899999999999999999998889999999753                            1234456789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++......+++..+..++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||+++...... ....
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~  164 (269)
T 4hcu_A           89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS  164 (269)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred             CCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-cccc
Confidence            99999999876667899999999999999999999   9999999999999999999999999999998764321 1122


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....+|+.|+||
T Consensus       165 ~~~~~~~~y~aP  176 (269)
T 4hcu_A          165 TGTKFPVKWASP  176 (269)
T ss_dssp             TSTTCCGGGCCH
T ss_pred             cCcccccccCCH
Confidence            234467789998

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=2.4e-23  Score=209.55  Aligned_cols=139  Identities=29%  Similarity=0.422  Sum_probs=115.6

Q ss_pred             cCCccccceeccCCceEEEEEEc----cCCcEEEEEEEeec----------------------------------cCccc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS----------------------------------CSNED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~----------------------------------~~~~~  425 (527)
                      .++|++.+.||+|+||.||+|+.    .+++.||||++...                                  +..++
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            46799999999999999999986    47899999987421                                  11234


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+++|+|.+++...+ .+++.+...++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~  208 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  208 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence            5679999999999999997643 5788889999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +..... .......||++|+||
T Consensus       209 ~~~~~~-~~~~~~~gt~~y~aP  229 (355)
T 1vzo_A          209 FVADET-ERAYDFCGTIEYMAP  229 (355)
T ss_dssp             CCGGGG-GGGCGGGSCCTTCCH
T ss_pred             cccCCC-CcccCcccCcCccCh
Confidence            643221 122345689999998

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.89  E-value=3.8e-23  Score=202.83  Aligned_cols=141  Identities=26%  Similarity=0.420  Sum_probs=114.5

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|+. +++.||||++...                                .......++||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~   85 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLIT   85 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEeh
Confidence            46799999999999999999987 6889999997421                                01123467999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-----YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||+++|+|.+++..  ..+++..+..++.|++.||+|||..     ++++|+||||||+||+++.++.+||+|||+|+..
T Consensus        86 e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           86 HYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH  163 (301)
T ss_dssp             CCCTTCBHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             hhccCCCHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeec
Confidence            99999999999954  4588999999999999999999932     2679999999999999999999999999999876


Q ss_pred             CCCCCcc--ceeccccccccccC
Q 035895          507 TGEDQSM--TQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~--~~~~~~~t~~y~aP  527 (527)
                      .......  ......||++|+||
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aP  186 (301)
T 3q4u_A          164 SQSTNQLDVGNNPRVGTKRYMAP  186 (301)
T ss_dssp             ETTTTEEECCCCCCCCCGGGCCH
T ss_pred             ccccccccccccccccccceeCh
Confidence            5432211  12234689999998

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.89  E-value=2.3e-23  Score=216.20  Aligned_cols=139  Identities=27%  Similarity=0.404  Sum_probs=114.8

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||++...                                +...+..++
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            346799999999999999999985 57899999987521                                223456689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||||+++|+|.+++... ..+++..+..++.|++.||+|||   + ++||||||||+|||++.++.+||+|||+|+....
T Consensus       226 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          226 VMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             EECCCSSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred             EEeeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence            99999999999998754 35788899999999999999999   7 8999999999999999999999999999986433


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  .....+||++||||
T Consensus       302 ~~~--~~~~~~gt~~y~aP  318 (446)
T 4ejn_A          302 DGA--TMKTFCGTPEYLAP  318 (446)
T ss_dssp             -------CCSSSCGGGCCH
T ss_pred             CCc--ccccccCCccccCH
Confidence            221  22346789999998

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.89  E-value=1.8e-23  Score=211.72  Aligned_cols=141  Identities=27%  Similarity=0.515  Sum_probs=105.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc----CCcEEEEEEEee------------------------------ccCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHF------------------------------SCSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~------------------------------~~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+..    ++..||||+++.                              .+...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            356899999999999999999864    577899998742                              1233456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.....
T Consensus       124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  200 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD  200 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence            99999999999999877667899999999999999999999   899999999999999999999999999999877533


Q ss_pred             CCc-cceeccccccccccC
Q 035895          510 DQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-~~~~~~~~t~~y~aP  527 (527)
                      ... .......++++|+||
T Consensus       201 ~~~~~~~~~~~~~~~y~aP  219 (373)
T 2qol_A          201 PEAAYTTRGGKIPIRWTSP  219 (373)
T ss_dssp             -------------CTTSCH
T ss_pred             CccceeccCCCcCCCccCh
Confidence            211 111223356789998

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.89  E-value=3.6e-23  Score=202.64  Aligned_cols=138  Identities=27%  Similarity=0.442  Sum_probs=110.8

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|+. .+++.||+|++..                                .+..++..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            5699999999999999999985 5689999998742                                122345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||++||+|.+++...+ .+++..+..++.|++.||+|+|   +++|+||||||+||+++.++.+||+|||+++.......
T Consensus        91 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  166 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL  166 (294)
T ss_dssp             ECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred             eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccc
Confidence            9999999999997653 5788999999999999999999   99999999999999999999999999999987653321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                       .......||+.|+||
T Consensus       167 -~~~~~~~gt~~y~aP  181 (294)
T 4eqm_A          167 -TQTNHVLGTVQYFSP  181 (294)
T ss_dssp             ---------CCSSCCH
T ss_pred             -cccCccccCccccCH
Confidence             122235689999998

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.89  E-value=4.1e-23  Score=217.60  Aligned_cols=139  Identities=29%  Similarity=0.434  Sum_probs=117.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|+..++||+|+||.||+|+.. +|+.||||++..                                .+...+..++|
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            467999999999999999999974 699999999842                                12234567899


Q ss_pred             EEeccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |||++||+|.+++....   ..+++..+..++.||+.||+|||   +++|+||||||+||+++.++.+||+|||+++.+.
T Consensus       264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence            99999999999987642   35888899999999999999999   9999999999999999999999999999998765


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  .....+||+.||||
T Consensus       341 ~~~~--~~~~~~GT~~Y~AP  358 (543)
T 3c4z_A          341 AGQT--KTKGYAGTPGFMAP  358 (543)
T ss_dssp             TTCC--CBCCCCSCTTTSCH
T ss_pred             CCCc--ccccccCCccccCh
Confidence            3321  12235789999998

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.89  E-value=4e-23  Score=205.71  Aligned_cols=140  Identities=26%  Similarity=0.354  Sum_probs=115.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                            +...+..++||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            36799999999999999999985 67899999987531                            12234568999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeecccccccCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV-----AHLSDFGIAKLLTGE  509 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-----~kl~Dfg~a~~~~~~  509 (527)
                       +|+|.+++...+..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.     +||+|||+|+.+...
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~  163 (330)
T 2izr_A           88 -GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDP  163 (330)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCT
T ss_pred             -CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecC
Confidence             99999999876667899999999999999999999   899999999999999998887     999999999976433


Q ss_pred             CCcc-----ceeccccccccccC
Q 035895          510 DQSM-----TQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~-----~~~~~~~t~~y~aP  527 (527)
                      ....     ......||+.|+||
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aP  186 (330)
T 2izr_A          164 ETKKHIPYREHKSLTGTARYMSI  186 (330)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             CCCccccccccCCcCCCccccCh
Confidence            2111     12345689999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.2e-23  Score=209.97  Aligned_cols=244  Identities=22%  Similarity=0.240  Sum_probs=199.5

Q ss_pred             CCCEEEcccCCCCcccChhHhhc-cccccEEEcccCccccccchhhcCCcCCcEEEeecCccccc-CcccccCCCCCCEE
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNF-SQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS-ISITLGKLQKLQFL  169 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L  169 (527)
                      .++.+|+++|.+.   +..+..+ .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+.|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4789999999887   3444443 24799999999999977666 55799999999999999865 77788999999999


Q ss_pred             eccCcccccccChhhhcCcccCeeeeecc-cCCC-CCCccccCCccCceeeCCCC-CCCC--CchhhhCCC-CccEEEcc
Q 035895          170 SFRGNELEGSIPNVLCHLAVLFQLDLRGN-KLSG-SIPTCFGNLTALRNLHLDSN-ELTS--IPSILWNLK-DILYLDFW  243 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~-~~p~~~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~-~L~~l~l~  243 (527)
                      ++++|.+++..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .++.  ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            99999999888899999999999999999 6775 26677889999999999999 9986  678888899 99999999


Q ss_pred             CC--ccc-ccCCccccCCCCCCEEEccCCC-CCCCChhhhhcCCCCCEEEccccc-ceeecCCCCCCCCCCCEEeCCCCc
Q 035895          244 SN--LFV-GPLPSKIGNLKVLTRIDFSRNN-LLGDIPTTIQGLKSLQFLSLGHNR-LQGSIPNSFDDLVSLESLDLSNNN  318 (527)
Q Consensus       244 ~n--~~~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ls~N~  318 (527)
                      +|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            99  444 4567778889999999999999 776778899999999999999995 33222235788999999999999 


Q ss_pred             ccccCccchhhhc-cCCeeEeeeeee
Q 035895          319 LSEIIPLSLEKLL-YLNILLIVVVIL  343 (527)
Q Consensus       319 l~~~~p~~~~~l~-~L~~L~~~~~~~  343 (527)
                      +   ....+..+. .+..|.++.+.+
T Consensus       283 i---~~~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          283 V---PDGTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             S---CTTCHHHHHHHSTTSEESCCCS
T ss_pred             c---CHHHHHHHHhhCcceEEecccC
Confidence            3   333455543 366666665554

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.89  E-value=3.7e-23  Score=205.56  Aligned_cols=141  Identities=26%  Similarity=0.354  Sum_probs=112.4

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcE----EEEEEEeec-----------------------------cCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGME----FAIKVFHFS-----------------------------CSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~----vavK~~~~~-----------------------------~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+.. +++.    ||+|++...                             +...+..++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQL   91 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEE
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEE
Confidence            356899999999999999999853 4544    777776321                             012345679


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus        92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  168 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD  168 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred             EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence            99999999999999876567888889999999999999999   899999999999999999999999999999987544


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..........+|.+|+||
T Consensus       169 ~~~~~~~~~~~~~~y~aP  186 (325)
T 3kex_A          169 DKQLLYSEAKTPIKWMAL  186 (325)
T ss_dssp             TTCCC-----CCTTTSCH
T ss_pred             cccccccCCCCcccccCh
Confidence            333333445678889998

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.88  E-value=1.3e-23  Score=209.85  Aligned_cols=132  Identities=23%  Similarity=0.271  Sum_probs=110.1

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc-------------------------C----------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-------------------------S----------------  422 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-------------------------~----------------  422 (527)
                      .++|++.+.||+|+||+||+|+. +|+.||||++....                         .                
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            45689999999999999999987 68999999986321                         0                


Q ss_pred             -----------------------------------ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 035895          423 -----------------------------------NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALE  467 (527)
Q Consensus       423 -----------------------------------~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~  467 (527)
                                                         .++..++|||||++|++.+.+.+  ..+++..+..++.||+.||+
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~  175 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA  175 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence                                               14678999999999976665533  45788999999999999999


Q ss_pred             HHhcCCCCCeEecCCCCCCeeeCCCC--------------------cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          468 YLHFGYSTPIIHCDLKPHNKLLDDNI--------------------VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       468 ylH~~~~~~iiHrdlk~~nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+  +++||||||||+|||++.++                    .+||+|||+|+.....       ..+||+.||||
T Consensus       176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~aP  246 (336)
T 2vuw_A          176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMDE  246 (336)
T ss_dssp             HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTCS
T ss_pred             HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccCh
Confidence            9992  47899999999999999876                    9999999999976432       23688999999

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.88  E-value=3.1e-23  Score=204.53  Aligned_cols=142  Identities=30%  Similarity=0.476  Sum_probs=108.0

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEee-------------------------------ccCccceeE
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-------------------------------SCSNEDFRA  428 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-------------------------------~~~~~~~~~  428 (527)
                      +....++|++.+.||+|+||.||+|+. +++.||||++..                               .+...+..+
T Consensus        32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  110 (309)
T 3p86_A           32 MDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLS  110 (309)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCE
T ss_pred             ccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceE
Confidence            334456799999999999999999986 578999999742                               123345678


Q ss_pred             EEEEeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +||||+++|+|.+++...+.  .+++..+..++.|++.||+|||   +.+  |+||||||+||+++.++.+||+|||+++
T Consensus       111 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~  187 (309)
T 3p86_A          111 IVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR  187 (309)
T ss_dssp             EEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred             EEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence            99999999999999976432  3788899999999999999999   888  9999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......  .......||+.|+||
T Consensus       188 ~~~~~~--~~~~~~~gt~~y~aP  208 (309)
T 3p86_A          188 LKASTF--LSSKSAAGTPEWMAP  208 (309)
T ss_dssp             ----------------CCTTSCH
T ss_pred             cccccc--cccccCCCCccccCh
Confidence            654321  122345688999998

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.88  E-value=3.9e-23  Score=205.53  Aligned_cols=138  Identities=30%  Similarity=0.434  Sum_probs=110.9

Q ss_pred             cCCccccceeccCCceEEEEEEc----cCCcEEEEEEEeec---------------------------------cCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS---------------------------------CSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~---------------------------------~~~~~~  426 (527)
                      .++|++.+.||+|+||.||+|+.    .+++.||+|+++..                                 +..++.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            46799999999999999999986    47899999987421                                 123346


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+++|+|.+++...+ .++......++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++..
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            689999999999999997543 5778888899999999999999   899999999999999999999999999999865


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....  ......||++|+||
T Consensus       172 ~~~~~--~~~~~~gt~~y~aP  190 (327)
T 3a62_A          172 IHDGT--VTHTFCGTIEYMAP  190 (327)
T ss_dssp             ---------CTTSSCCTTSCH
T ss_pred             ccCCc--cccccCCCcCccCH
Confidence            32221  12235689999998

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.88  E-value=1.1e-22  Score=199.26  Aligned_cols=140  Identities=19%  Similarity=0.263  Sum_probs=116.0

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                            +......++||||+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence            35699999999999999999985 67899999987531                            12234668999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeecccccccCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV-----AHLSDFGIAKLLTGE  509 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-----~kl~Dfg~a~~~~~~  509 (527)
                       +|+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.     +||+|||+|+.....
T Consensus        89 -~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A           89 -GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             -CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence             99999999876667899999999999999999999   999999999999999987766     999999999876543


Q ss_pred             CCc-----cceeccccccccccC
Q 035895          510 DQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-----~~~~~~~~t~~y~aP  527 (527)
                      ...     .......||+.|+||
T Consensus       165 ~~~~~~~~~~~~~~~gt~~y~aP  187 (298)
T 1csn_A          165 VTKQHIPYREKKNLSGTARYMSI  187 (298)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCH
T ss_pred             cccccccccCccCCCCCcccCCc
Confidence            221     112345689999998

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.4e-23  Score=209.11  Aligned_cols=141  Identities=26%  Similarity=0.416  Sum_probs=115.6

Q ss_pred             cCCccccceeccCCceEEEEEEcc--------CCcEEEEEEEee-------------------------------ccCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHF-------------------------------SCSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~-------------------------------~~~~~  424 (527)
                      .+.|.+.+.||+|+||.||+|+..        .+..||||++..                               .+..+
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            457889999999999999999852        346799999742                               12334


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      +..++||||+++|+|.+++....               ..+++.++..++.|++.||+|||   +.+|+||||||+||++
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll  224 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV  224 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence            56789999999999999997643               34889999999999999999999   8999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++++.+||+|||+|+...............+|++|+||
T Consensus       225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  262 (382)
T 3tt0_A          225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  262 (382)
T ss_dssp             CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCH
T ss_pred             cCCCcEEEcccCcccccccccccccccCCCCCcceeCH
Confidence            99999999999999877543322233344578889998

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.88  E-value=3.3e-23  Score=209.30  Aligned_cols=140  Identities=21%  Similarity=0.339  Sum_probs=113.7

Q ss_pred             cCCccccceeccCCceEEEEEEccC------CcEEEEEEEeecc------------------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD------GMEFAIKVFHFSC------------------------------------  421 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~------~~~vavK~~~~~~------------------------------------  421 (527)
                      .++|++.+.||+|+||.||+|....      ++.||||++....                                    
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4579999999999999999998754      4789999964210                                    


Q ss_pred             ----Cc----cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--C
Q 035895          422 ----SN----EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--D  491 (527)
Q Consensus       422 ----~~----~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~  491 (527)
                          ..    ....++||||+ +|+|.+++...+..+++..+..|+.|++.||+|||   +++|+||||||+|||++  .
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSC
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCC
Confidence                00    13468999999 99999999876667899999999999999999999   89999999999999998  8


Q ss_pred             CCcEEEeecccccccCCCCCcc-----ceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSM-----TQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~-----~~~~~~~t~~y~aP  527 (527)
                      ++.+||+|||+|+.+.......     ......||+.||||
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  230 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSI  230 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCH
T ss_pred             CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCH
Confidence            8999999999998765322111     11234589999998

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.88  E-value=3.5e-23  Score=201.37  Aligned_cols=142  Identities=25%  Similarity=0.410  Sum_probs=115.7

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEe
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey  433 (527)
                      ...++|++.+.||+|+||.||+|+..++..||||++..                            .+..++..++||||
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  100 (283)
T 3gen_A           21 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY  100 (283)
T ss_dssp             CCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred             CCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence            34567999999999999999999999889999999753                            12344567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++......+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++...... ..
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~  176 (283)
T 3gen_A          101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT  176 (283)
T ss_dssp             CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred             cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence            9999999999875567899999999999999999999   9999999999999999999999999999998764321 11


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+|+.|+||
T Consensus       177 ~~~~~~~~~~y~aP  190 (283)
T 3gen_A          177 SSVGSKFPVRWSPP  190 (283)
T ss_dssp             STTSTTSCGGGCCH
T ss_pred             cccCCccCcccCCH
Confidence            12233467789998

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.88  E-value=3.9e-23  Score=201.71  Aligned_cols=137  Identities=26%  Similarity=0.446  Sum_probs=112.8

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||+|+||.||+|+..+++.||+|++...                               +..++..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            579999999999999999999988999999997431                               1234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++ +|.+++......+++.....++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.......  
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--  155 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--  155 (288)
T ss_dssp             CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc--
Confidence            986 999998876667889999999999999999999   89999999999999999999999999999987643221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ..+...+|+.|+||
T Consensus       156 ~~~~~~~t~~y~aP  169 (288)
T 1ob3_A          156 KYTHEIVTLWYRAP  169 (288)
T ss_dssp             ------CCCTTCCH
T ss_pred             ccccccccccccCc
Confidence            12234578899998

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=6.7e-23  Score=205.22  Aligned_cols=144  Identities=24%  Similarity=0.403  Sum_probs=116.5

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------cCc
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------CSN  423 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~~~  423 (527)
                      ....++|++.+.||+|+||.||+|+.      .+++.||||++...                               +..
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            33457899999999999999999985      24678999997421                               223


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCC----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecC
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNY----------------------ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD  481 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  481 (527)
                      .+..++||||+++|+|.+++.....                      .+++..+..++.|++.||+|||   +++|+|||
T Consensus       121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~D  197 (344)
T 1rjb_A          121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRD  197 (344)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETT
T ss_pred             CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence            4566899999999999999976432                      2688889999999999999999   89999999


Q ss_pred             CCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       482 lk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+||+++.++.+||+|||+++...............+|++|+||
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  243 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  243 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCH
Confidence            9999999999999999999999876543332223344578889998

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.88  E-value=7.4e-23  Score=203.54  Aligned_cols=141  Identities=26%  Similarity=0.445  Sum_probs=111.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeeccC----------------------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSCS----------------------------------------  422 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~~----------------------------------------  422 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++.....                                        
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            356899999999999999999975 789999999752100                                        


Q ss_pred             -----------------------------------------------ccceeEEEEEeccCCcHHHHHHhcC--CCCCHH
Q 035895          423 -----------------------------------------------NEDFRALVLEYTTNGSLEKVLYSSN--YILDIL  453 (527)
Q Consensus       423 -----------------------------------------------~~~~~~lv~ey~~~g~L~~~l~~~~--~~~~~~  453 (527)
                                                                     .+...++|||||++|+|.+++....  ...++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                           0112689999999999999997643  234666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc----------cceeccccccc
Q 035895          454 QRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS----------MTQTQTLAIIG  523 (527)
Q Consensus       454 ~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~----------~~~~~~~~t~~  523 (527)
                      .+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++........          .......||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            78889999999999999   999999999999999999999999999999987543211          11233568999


Q ss_pred             cccC
Q 035895          524 YMAP  527 (527)
Q Consensus       524 y~aP  527 (527)
                      |+||
T Consensus       242 y~aP  245 (332)
T 3qd2_B          242 YMSP  245 (332)
T ss_dssp             GSCH
T ss_pred             ccCh
Confidence            9998

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.9e-23  Score=211.12  Aligned_cols=141  Identities=24%  Similarity=0.385  Sum_probs=112.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|++.+.||+|+||+||+|+..      +++.||||++...                              +...+..
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            356889999999999999999842      4678999997421                              2234566


Q ss_pred             EEEEEeccCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEEe
Q 035895          428 ALVLEYTTNGSLEKVLYSSN------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHLS  498 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~  498 (527)
                      ++||||+++|+|.+++...+      ..+++.++..++.|++.||+|||   +++|+||||||+|||++.++   .+||+
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~  226 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG  226 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence            89999999999999997643      34788899999999999999999   99999999999999999554   59999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+|+...............+|+.||||
T Consensus       227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  255 (367)
T 3l9p_A          227 DFGMARDIYRAGYYRKGGCAMLPVKWMPP  255 (367)
T ss_dssp             CCHHHHHHHHHSSCTTCCGGGSCGGGCCH
T ss_pred             CCccccccccccccccCCCcCCcccEECH
Confidence            99999865322222222334578899998

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.88  E-value=6.8e-23  Score=209.44  Aligned_cols=138  Identities=28%  Similarity=0.400  Sum_probs=108.2

Q ss_pred             cCCcccc-ceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------c----CccceeEEEEE
Q 035895          384 TDGFSAN-NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------C----SNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~-~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~----~~~~~~~lv~e  432 (527)
                      .++|.+. ++||+|+||+||+|+. .+++.||||++...                         +    ...+..++|||
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E  139 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME  139 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEE
Confidence            4567776 7899999999999986 46899999997421                         0    12345789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+||+|.+++...+ ..+++.++..|+.||+.||+|||   +.+|+||||||+|||++.   ++.+||+|||+++....
T Consensus       140 ~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~  216 (400)
T 1nxk_A          140 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS  216 (400)
T ss_dssp             CCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-
T ss_pred             eCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccccccCC
Confidence            999999999997643 35889999999999999999999   899999999999999987   78999999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   ..+..+||++||||
T Consensus       217 ~~---~~~~~~gt~~y~aP  232 (400)
T 1nxk_A          217 HN---SLTTPCYTPYYVAP  232 (400)
T ss_dssp             -------------CTTCCG
T ss_pred             CC---ccccCCCCCCccCH
Confidence            22   12345689999998

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.88  E-value=1.2e-22  Score=198.60  Aligned_cols=137  Identities=26%  Similarity=0.402  Sum_probs=113.5

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|++.+.||+|+||+||+|+. .+++.||||++...                               +..++..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            5799999999999999999986 46899999998531                               123456689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++ ++.+.+......+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+....... 
T Consensus        82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-  156 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR-  156 (292)
T ss_dssp             CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS-
T ss_pred             cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccc-
Confidence            9986 666666665567899999999999999999999   89999999999999999999999999999987643322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......+|++|+||
T Consensus       157 -~~~~~~~t~~y~aP  170 (292)
T 3o0g_A          157 -CYSAEVVTLWYRPP  170 (292)
T ss_dssp             -CCCSCCSCGGGCCH
T ss_pred             -cccCCccccCCcCh
Confidence             22335678999998

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.88  E-value=3.6e-23  Score=207.03  Aligned_cols=144  Identities=26%  Similarity=0.421  Sum_probs=116.4

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCcc
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNE  424 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~  424 (527)
                      ....++|++.+.||+|+||.||+|+..      +++.||||+++.                              .+...
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            344578999999999999999999864      358899999742                              12344


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecC
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN-----------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD  481 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  481 (527)
                      +..++||||+++|+|.+++....                       ..+++.++..++.|++.||+|||   +++|+|||
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D  199 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD  199 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            56789999999999999997632                       45788899999999999999999   99999999


Q ss_pred             CCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       482 lk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+||+++.++.+||+|||+++...............+|+.|+||
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  245 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  245 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecCh
Confidence            9999999999999999999999876433222222334578899998

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.88  E-value=1.2e-22  Score=204.43  Aligned_cols=137  Identities=28%  Similarity=0.414  Sum_probs=114.8

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------------~~~~~~~  427 (527)
                      .+.|++.+.||+|+||.||+|+.. +|+.||+|++...                                   +...+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            456999999999999999999864 6899999998531                                   1223456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIA  503 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a  503 (527)
                      ++||||++||+|.+++... ..+++..+..++.||+.||+|||   +.+|+||||||+||+++.++    .+||+|||++
T Consensus        91 ~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a  166 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQK-ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA  166 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTC-SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred             EEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence            8999999999999999654 46789999999999999999999   89999999999999998776    7999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.......   .....||++|+||
T Consensus       167 ~~~~~~~~---~~~~~gt~~y~aP  187 (361)
T 2yab_A          167 HEIEDGVE---FKNIFGTPEFVAP  187 (361)
T ss_dssp             EECCTTCC---CCCCCSCGGGCCH
T ss_pred             eEcCCCCc---cccCCCCccEECc
Confidence            87754321   2345689999998

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.88  E-value=4.5e-23  Score=201.87  Aligned_cols=141  Identities=27%  Similarity=0.430  Sum_probs=111.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec-----------------------------cC--cccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS-----------------------------CS--NEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~-----------------------------~~--~~~~~  427 (527)
                      .+.|++.+.||+|+||.||+|++     .+++.||||++...                             +.  .....
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            45689999999999999999984     36889999997431                             11  12346


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++...
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~  165 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP  165 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred             EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence            7999999999999999877666899999999999999999999   9999999999999999999999999999998775


Q ss_pred             CCCCc-cceeccccccccccC
Q 035895          508 GEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ..... .......++..|+||
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aP  186 (295)
T 3ugc_A          166 QDKEFFKVKEPGESPIFWYAP  186 (295)
T ss_dssp             ----------CTTCGGGGCCH
T ss_pred             CCcceeeeccCCCCccceeCc
Confidence            43221 122234467789998

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=9e-23  Score=203.51  Aligned_cols=138  Identities=28%  Similarity=0.436  Sum_probs=112.3

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCcc----ceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNE----DFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~----~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|+.. ++.||||++...                            +...    ...++||
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  114 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLIT  114 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEE
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEE
Confidence            467999999999999999999876 899999997421                            1111    4678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC--------CeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST--------PIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~--------~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ||+++|+|.+++...  .+++..+..++.+++.||+|||   +.        +|+||||||+||+++.++.+||+|||+|
T Consensus       115 e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a  189 (337)
T 3mdy_A          115 DYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  189 (337)
T ss_dssp             CCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             eccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCc
Confidence            999999999999654  5788899999999999999999   66        9999999999999999999999999999


Q ss_pred             cccCCCCCcc--ceeccccccccccC
Q 035895          504 KLLTGEDQSM--TQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~--~~~~~~~t~~y~aP  527 (527)
                      +.+.......  ......||++|+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~gt~~y~aP  215 (337)
T 3mdy_A          190 VKFISDTNEVDIPPNTRVGTKRYMPP  215 (337)
T ss_dssp             EECC---------CCSSCSCGGGCCH
T ss_pred             eeeccccccccCCCCCCccCcceeCh
Confidence            8764332211  11234689999998

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.88  E-value=1.7e-22  Score=197.66  Aligned_cols=141  Identities=26%  Similarity=0.398  Sum_probs=114.5

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEe
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey  433 (527)
                      ..+.|++.+.||+|+||.||+|+. .+++.||||++...                            ....+..++||||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence            346799999999999999999985 67899999985321                            1234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      + +|+|.+++......+++.++..++.|++.||+|||   +++|+||||||+||++   ++++.+||+|||+++......
T Consensus        87 ~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~  162 (296)
T 4hgt_A           87 L-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             C-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             c-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcc
Confidence            9 99999999866667899999999999999999999   9999999999999999   788999999999998765432


Q ss_pred             Cc-----cceeccccccccccC
Q 035895          511 QS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~-----~~~~~~~~t~~y~aP  527 (527)
                      ..     .......+|+.|+||
T Consensus       163 ~~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 4hgt_A          163 THQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             TCCBCCCCCSCCCCSCGGGCCH
T ss_pred             cCccCCCCcccccCCCccccch
Confidence            21     112245689999998

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.88  E-value=9.3e-23  Score=203.23  Aligned_cols=137  Identities=27%  Similarity=0.430  Sum_probs=115.1

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      ..+.|++.+.||+|+||.||+|+. .+++.||||++..                                .+..++..++
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            357899999999999999999996 6789999998742                                1223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+ +|+|.+++... ..+++.++..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.....
T Consensus        87 v~E~~-~g~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~  161 (336)
T 3h4j_B           87 VIEYA-GGELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG  161 (336)
T ss_dssp             EECCC-CEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred             EEECC-CCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence            99999 68999988654 35788899999999999999999   899999999999999999999999999999876543


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   ....+||++|+||
T Consensus       162 ~~---~~~~~gt~~y~aP  176 (336)
T 3h4j_B          162 NF---LKTSCGSPNYAAP  176 (336)
T ss_dssp             BT---TCCCTTSTTTSCG
T ss_pred             cc---cccccCCcCcCCH
Confidence            21   1235689999998

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.88  E-value=1.6e-22  Score=205.46  Aligned_cols=138  Identities=25%  Similarity=0.405  Sum_probs=116.2

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey  433 (527)
                      .+.|++.+.||+|+||.||+|.. .+++.||+|++..                             .+..++..++||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            35799999999999999999986 4689999998753                             12334567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      +++|+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||+++.  ++.+||+|||+|+.......
T Consensus       130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~  206 (387)
T 1kob_A          130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI  206 (387)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence            9999999999766667899999999999999999999   999999999999999974  57899999999998754321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....||++|+||
T Consensus       207 ---~~~~~gt~~y~aP  219 (387)
T 1kob_A          207 ---VKVTTATAEFAAP  219 (387)
T ss_dssp             ---EEEECSSGGGCCH
T ss_pred             ---eeeeccCCCccCc
Confidence               2234689999998

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.88  E-value=1.5e-22  Score=206.19  Aligned_cols=137  Identities=26%  Similarity=0.391  Sum_probs=110.2

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------------~~~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|...+++.||||++...                                 +..++..++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            349999999999999999999888999999997421                                 12334568999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      | +.+|+|.+++...+ .+++.++..++.||+.||+|||   +.+|+||||||+|||++ ++.+||+|||+|+.+.....
T Consensus       136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred             e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence            9 57889999997654 5788889999999999999999   99999999999999996 58999999999997754332


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .......+||++||||
T Consensus       210 ~~~~~~~~gt~~y~aP  225 (390)
T 2zmd_A          210 SVVKDSQVGAVNYMPP  225 (390)
T ss_dssp             ----CCSCCCGGGCCH
T ss_pred             cccCCCCCcCCCccCh
Confidence            2223345689999998

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.88  E-value=1.4e-22  Score=210.94  Aligned_cols=137  Identities=26%  Similarity=0.461  Sum_probs=116.6

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||++...                                +..++..++|
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            577999999999999999999864 7999999997421                                2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++... ..+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        95 ~E~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~  170 (476)
T 2y94_A           95 MEYVSGGELFDYICKN-GRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  170 (476)
T ss_dssp             EECCSSEEHHHHTTSS-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred             EeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence            9999999999998653 45889999999999999999999   9999999999999999999999999999999775432


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .   ....+||++|+||
T Consensus       171 ~---~~~~~gt~~y~aP  184 (476)
T 2y94_A          171 F---LRTSCGSPNYAAP  184 (476)
T ss_dssp             C---BCCCCSCSTTCCH
T ss_pred             c---ccccCCCcCeECh
Confidence            1   1235689999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=3.8e-22  Score=200.29  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=188.5

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccC-cccccCCCCCCE-Eec
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSI-SITLGKLQKLQF-LSF  171 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~-L~l  171 (527)
                      ++++.++++++. +|..+   +.+++.|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +..|.++++|.. +.+
T Consensus        12 ~~v~C~~~~Lt~-iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            678999999996 56544   457999999999999888889999999999999999986644 567899998875 667


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC-CCCCCCchh-hhCC-CCccEEEccCCccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS-NELTSIPSI-LWNL-KDILYLDFWSNLFV  248 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l-~~L~~l~l~~n~~~  248 (527)
                      +.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ |+++.+|.. +..+ ..++.|++++|.+.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            78999988899999999999999999999988888888888899999965 678888753 4444 46889999999998


Q ss_pred             ccCCccccCCCCCCEEEccC-CCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCC-cccccCccc
Q 035895          249 GPLPSKIGNLKVLTRIDFSR-NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN-NLSEIIPLS  326 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N-~l~~~~p~~  326 (527)
                      ...+..| ...+|++|++++ |.+....++.|.++++|++|++++|+|+...+..|.+   |+.|.+.++ .++. +| .
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~-lP-~  241 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKK-LP-T  241 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCC-CC-C
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCc-CC-C
Confidence            6555444 567899999985 5666555567899999999999999999665555655   455554444 4544 44 4


Q ss_pred             hhhhccCCeeEee
Q 035895          327 LEKLLYLNILLIV  339 (527)
Q Consensus       327 ~~~l~~L~~L~~~  339 (527)
                      +.++.+|+.+++.
T Consensus       242 l~~l~~L~~l~l~  254 (350)
T 4ay9_X          242 LEKLVALMEASLT  254 (350)
T ss_dssp             TTTCCSCCEEECS
T ss_pred             chhCcChhhCcCC
Confidence            7788888887754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.88  E-value=1.8e-22  Score=210.59  Aligned_cols=140  Identities=26%  Similarity=0.386  Sum_probs=116.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++...                            +...+..++||||+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence            46799999999999999999985 67899999986431                            12345668999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                       +|+|.+++......+++..+..|+.||+.||+|||   +++||||||||+|||+   +.++.+||+|||+|+.+.....
T Consensus        86 -g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~  161 (483)
T 3sv0_A           86 -GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTST  161 (483)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             -CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcc
Confidence             99999999866667899999999999999999999   9999999999999999   5889999999999997754322


Q ss_pred             c-----cceeccccccccccC
Q 035895          512 S-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~-----~~~~~~~~t~~y~aP  527 (527)
                      .     .......||..|+||
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~aP  182 (483)
T 3sv0_A          162 HQHIPYRENKNLTGTARYASV  182 (483)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCH
T ss_pred             ccccccccccccCCCccccCH
Confidence            1     112245689999998

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=200.27  Aligned_cols=137  Identities=28%  Similarity=0.447  Sum_probs=113.8

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cC--ccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CS--NEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~--~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|+.. +++.||||++...                              +.  .....++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            46899999999999999999865 5899999997531                              11  122568999


Q ss_pred             EeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee----CCCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~Dfg~a~~  505 (527)
                      ||+++|+|.+++.....  .+++.++..++.|++.||+|||   +.+|+||||||+||++    +.++.+||+|||+|+.
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence            99999999999976432  3889999999999999999999   9999999999999999    7888899999999988


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   .....+|..|+||
T Consensus       166 ~~~~~~---~~~~~gt~~y~aP  184 (319)
T 4euu_A          166 LEDDEQ---FVSLYGTEEYLHP  184 (319)
T ss_dssp             CCTTCC---BCCCCSCGGGCCH
T ss_pred             cCCCCc---eeecccCCCccCH
Confidence            754322   2234688999998

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.88  E-value=1.7e-22  Score=201.56  Aligned_cols=141  Identities=26%  Similarity=0.454  Sum_probs=113.7

Q ss_pred             cCCccccceeccCCceEEEEEEc--------cCCcEEEEEEEee-------------------------------ccCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL--------QDGMEFAIKVFHF-------------------------------SCSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~--------~~~~~vavK~~~~-------------------------------~~~~~  424 (527)
                      .++|++.+.||+|+||.||+|+.        .+++.||||++..                               .+..+
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            46789999999999999999985        3567899998742                               12334


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      +..++||||+++|+|.+++....               ..+++.++..++.|++.||+|||   +.+|+||||||+||++
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV  190 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence            56789999999999999997643               23788899999999999999999   8999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.++.+||+|||+++...............+|+.|+||
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  228 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  228 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCH
T ss_pred             cCCCCEEEccccccccccccccccccCCCCcccceeCh
Confidence            99999999999999877543322222334567889998

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=203.92  Aligned_cols=138  Identities=25%  Similarity=0.379  Sum_probs=109.7

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------------~~~~~~~~lv  430 (527)
                      .+.|++.+.||+|+||.||+|...+++.||||++...                                 +..++..++|
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv   87 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV   87 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence            3569999999999999999999988999999997521                                 1234466899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      || +.+|+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+|||++ ++.+||+|||+|+......
T Consensus        88 ~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A           88 ME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             EC-CCSEEHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred             Ee-CCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence            99 5678999999764 45788899999999999999999   89999999999999997 5789999999998775433


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........||++|+||
T Consensus       162 ~~~~~~~~~gt~~y~aP  178 (343)
T 3dbq_A          162 TSVVKDSQVGTVNYMPP  178 (343)
T ss_dssp             --------CCCCSSCCH
T ss_pred             ccccCCCCcCCcCcCCH
Confidence            32233345689999998

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=200.65  Aligned_cols=137  Identities=24%  Similarity=0.432  Sum_probs=110.4

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...                              +..++..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            57999999999999999999865 7899999987421                              2234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++ |+|.+++...+..+++.....++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--  155 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--  155 (324)
T ss_dssp             CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred             cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCcc--
Confidence            98 5999998877667899999999999999999999   99999999999999999999999999999986543221  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+|++|+||
T Consensus       156 ~~~~~~~t~~y~aP  169 (324)
T 3mtl_A          156 TYDNEVVTLWYRPP  169 (324)
T ss_dssp             -------CGGGCCH
T ss_pred             ccccccCcccccCh
Confidence            22234678999998

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.87  E-value=1.3e-22  Score=204.47  Aligned_cols=137  Identities=26%  Similarity=0.351  Sum_probs=107.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||||++...                            +...+..++||||+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            467999999999999999999875 7899999997531                            22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc--EEEeecccccccCCCCCc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV--AHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--~kl~Dfg~a~~~~~~~~~  512 (527)
                      ++|+|.+++...+ .+++..+..++.|++.||+|||   +++|+||||||+||+++.++.  +||+|||+|+......  
T Consensus        99 ~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~--  172 (361)
T 3uc3_A           99 SGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS--  172 (361)
T ss_dssp             CSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------
T ss_pred             CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC--
Confidence            9999999987543 5788899999999999999999   999999999999999987665  9999999998543221  


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......||++|+||
T Consensus       173 -~~~~~~gt~~y~aP  186 (361)
T 3uc3_A          173 -QPKSTVGTPAYIAP  186 (361)
T ss_dssp             ---------CTTSCH
T ss_pred             -CCCCCcCCCCcCCh
Confidence             12335689999998

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.87  E-value=4.1e-23  Score=214.80  Aligned_cols=144  Identities=19%  Similarity=0.377  Sum_probs=117.4

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEE
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLE  432 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~e  432 (527)
                      +....++|++.+.||+|+||.||+|+..++..||||+++..                           +...+..++|||
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e  262 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITE  262 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEC
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEe
Confidence            34455678999999999999999999988899999997531                           112345689999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++...+ ..+++.+...++.||+.||+|||   +++|+||||||+|||++.++.+||+|||+|+...... 
T Consensus       263 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-  338 (454)
T 1qcf_A          263 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-  338 (454)
T ss_dssp             CCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-
T ss_pred             ecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-
Confidence            999999999997542 35788889999999999999999   8999999999999999999999999999998764321 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ........+|+.|+||
T Consensus       339 ~~~~~~~~~~~~y~aP  354 (454)
T 1qcf_A          339 YTAREGAKFPIKWTAP  354 (454)
T ss_dssp             HHTTCSSSSCGGGSCH
T ss_pred             eeccCCCcccccccCH
Confidence            1112234467789998

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.87  E-value=1.5e-22  Score=199.85  Aligned_cols=142  Identities=25%  Similarity=0.419  Sum_probs=115.5

Q ss_pred             hcCCccccceeccCCceEEEEEEc------cCCcEEEEEEEee------------------------------ccCccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF------------------------------SCSNEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~------------------------------~~~~~~~  426 (527)
                      ..++|.+.+.||+|+||.||+|+.      .+++.||||+++.                              .+...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            346689999999999999999985      3458899999742                              1233456


Q ss_pred             eEEEEEeccCCcHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCC
Q 035895          427 RALVLEYTTNGSLEKVLYSSN-----------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLK  483 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk  483 (527)
                      .++||||+++|+|.+++....                       ..+++.++..++.|++.||+|||   +++|+|||||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dik  177 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLA  177 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccc
Confidence            789999999999999997643                       23788889999999999999999   8999999999


Q ss_pred             CCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          484 PHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       484 ~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+||++++++.+||+|||+++...............+|+.|+||
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  221 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAI  221 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred             hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccCh
Confidence            99999999999999999999877543322222334567889998

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.87  E-value=1.5e-22  Score=199.83  Aligned_cols=141  Identities=26%  Similarity=0.438  Sum_probs=116.1

Q ss_pred             cCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec-------------------------------cCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS-------------------------------CSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~-------------------------------~~~~~~  426 (527)
                      .++|++.+.||+|+||.||+|+.      .+++.||||+++..                               +..++.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            46789999999999999999974      35689999997521                               223456


Q ss_pred             eEEEEEeccCCcHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          427 RALVLEYTTNGSLEKVLYSSNY-----------------ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      .++||||+++|+|.+++.....                 .+++.+...++.|++.||+|||   +++|+||||||+||++
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~  178 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL  178 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred             cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence            6899999999999999976532                 3789999999999999999999   8999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.++.+|++|||+++...............+|+.|+||
T Consensus       179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  216 (313)
T 1t46_A          179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAP  216 (313)
T ss_dssp             ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCH
T ss_pred             cCCCCEEEccccccccccccccceeccCCCCcceeeCh
Confidence            99999999999999877544332222334567889998

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.87  E-value=2.6e-22  Score=198.71  Aligned_cols=138  Identities=26%  Similarity=0.406  Sum_probs=100.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++...                              +..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            467999999999999999999864 6899999997531                              223456789999


Q ss_pred             eccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          433 YTTNGSLEKVLYSSN-----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |++ |+|.+++....     ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++...
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            998 59999886532     34788888999999999999999   8999999999999999999999999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  ......+|++|+||
T Consensus       160 ~~~~--~~~~~~~t~~y~aP  177 (317)
T 2pmi_A          160 IPVN--TFSSEVVTLWYRAP  177 (317)
T ss_dssp             SCCC--CCCCCCSCCTTCCH
T ss_pred             CCcc--cCCCCcccccccCc
Confidence            3221  12234678999998

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.87  E-value=1.2e-22  Score=200.76  Aligned_cols=150  Identities=24%  Similarity=0.389  Sum_probs=120.2

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec----------------------------
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS----------------------------  420 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~----------------------------  420 (527)
                      +....+....++|++.+.||+|+||.||+|+.      .+++.||||++...                            
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34445555667899999999999999999973      35689999997421                            


Q ss_pred             ---cC-ccceeEEEEEeccCCcHHHHHHhcCCC---------------CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecC
Q 035895          421 ---CS-NEDFRALVLEYTTNGSLEKVLYSSNYI---------------LDILQRLNIMIDVTSALEYLHFGYSTPIIHCD  481 (527)
Q Consensus       421 ---~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~---------------~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  481 (527)
                         +. .....++||||+++|+|.+++......               +++..+..++.|++.||+|||   +++|+|||
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d  173 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD  173 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence               11 123478999999999999999765322               788889999999999999999   89999999


Q ss_pred             CCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       482 lk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+||+++.++.+|++|||+++...............+|++|+||
T Consensus       174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  219 (316)
T 2xir_A          174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  219 (316)
T ss_dssp             CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCc
Confidence            9999999999999999999999876543332233344578899998

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.87  E-value=2e-22  Score=202.39  Aligned_cols=138  Identities=26%  Similarity=0.428  Sum_probs=112.9

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~~~~~~l  429 (527)
                      +.|++.+.||+|+||.||+|+. .+++.||||++...                                  +..++..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4589999999999999999986 57899999987421                                  123456789


Q ss_pred             EEEeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecccc
Q 035895          430 VLEYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV---AHLSDFGIA  503 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~Dfg~a  503 (527)
                      |||||+||+|.+.+...   +..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.   +|++|||++
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            99999999998887643   234788889999999999999999   999999999999999986544   999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.......  ......||++|+||
T Consensus       181 ~~~~~~~~--~~~~~~gt~~y~aP  202 (351)
T 3c0i_A          181 IQLGESGL--VAGGRVGTPHFMAP  202 (351)
T ss_dssp             EECCTTSC--BCCCCCSCGGGCCH
T ss_pred             eEecCCCe--eecCCcCCcCccCH
Confidence            87754321  22345689999998

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=208.05  Aligned_cols=138  Identities=25%  Similarity=0.403  Sum_probs=113.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-------------------------------ccCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-------------------------------~~~~~~~~~lv~  431 (527)
                      .+.|++.+.||+|+||.||+|.. .+|+.||+|++..                               .+..++..++||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            45699999999999999999985 5789999998743                               123455678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~~  508 (527)
                      |||+||+|.+.+...+ .+++.++..++.|++.||+|||   +++|+||||||+||+++   +++.+||+|||+|+....
T Consensus        90 E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~  165 (444)
T 3soa_A           90 DLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG  165 (444)
T ss_dssp             CCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT
T ss_pred             EeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecC
Confidence            9999999999987653 5788899999999999999999   99999999999999998   468899999999987754


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...  ......||++||||
T Consensus       166 ~~~--~~~~~~gt~~Y~AP  182 (444)
T 3soa_A          166 EQQ--AWFGFAGTPGYLSP  182 (444)
T ss_dssp             TCC--BCCCSCSCGGGCCH
T ss_pred             CCc--eeecccCCcccCCH
Confidence            322  22345689999998

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.87  E-value=8e-23  Score=201.79  Aligned_cols=140  Identities=24%  Similarity=0.458  Sum_probs=107.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccC--------------------------------cc----ce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCS--------------------------------NE----DF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~--------------------------------~~----~~  426 (527)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++.....                                .+    ..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            36799999999999999999985 6789999999853110                                01    12


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||++||+|.+++...+ .+++.+...++.|++.||+|+|   +++|+||||||+||+++.++.+||+|||+++.+
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~  166 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI  166 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred             cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence            389999999999999997543 5788899999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCCc-cceeccccccccccC
Q 035895          507 TGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ...... .......||++|+||
T Consensus       167 ~~~~~~~~~~~~~~gt~~y~aP  188 (311)
T 3ork_A          167 ADSGNSVTQTAAVIGTAQYLSP  188 (311)
T ss_dssp             ---------------CCTTCCH
T ss_pred             cccccccccccccCcCcccCCH
Confidence            533221 112234589999998

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.87  E-value=6.5e-23  Score=203.31  Aligned_cols=146  Identities=22%  Similarity=0.374  Sum_probs=117.2

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccC
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCS  422 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~  422 (527)
                      ++....+.|++.+.||+|+||.||+|+..      +++.||||++..                              .+.
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   98 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS   98 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence            44455678999999999999999999754      468899998742                              123


Q ss_pred             ccceeEEEEEeccCCcHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI  493 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~  493 (527)
                      ..+..++||||+++|+|.+++...+         ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++
T Consensus        99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~  175 (322)
T 1p4o_A           99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDF  175 (322)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTC
T ss_pred             cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCC
Confidence            3456789999999999999987532         34578889999999999999999   89999999999999999999


Q ss_pred             cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+||+|||+++...............+|+.|+||
T Consensus       176 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (322)
T 1p4o_A          176 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  209 (322)
T ss_dssp             CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             eEEECcCccccccccccccccccCCCCCCCccCh
Confidence            9999999999876433222222234567889998

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.87  E-value=1.9e-22  Score=205.55  Aligned_cols=139  Identities=25%  Similarity=0.428  Sum_probs=104.6

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------c--Ccccee
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------C--SNEDFR  427 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~--~~~~~~  427 (527)
                      ..+.|++.+.||+|+||.||+|.. .+|+.||||++...                                +  ......
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            357899999999999999999985 57899999987321                                1  112357


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++|||||+ |+|.+++..  ..+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|+.+.
T Consensus        87 ~lv~e~~~-~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  160 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRA--NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV  160 (388)
T ss_dssp             EEEEECCS-EEHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred             EEEecccC-cCHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence            89999998 599999875  35788888999999999999999   9999999999999999999999999999998764


Q ss_pred             CCCC-------------------ccceeccccccccccC
Q 035895          508 GEDQ-------------------SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~-------------------~~~~~~~~~t~~y~aP  527 (527)
                      ....                   ....+..+||++|+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  199 (388)
T 3oz6_A          161 NIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAP  199 (388)
T ss_dssp             SCCCCCCCGGGCCC---------------CCCGGGGCCH
T ss_pred             ccccccccccccccccccccccccccccCCcccCCcCCH
Confidence            2110                   1112345789999998

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.87  E-value=7.4e-23  Score=203.56  Aligned_cols=140  Identities=25%  Similarity=0.384  Sum_probs=108.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcE----EEEEEEeecc-----------------------------CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGME----FAIKVFHFSC-----------------------------SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~----vavK~~~~~~-----------------------------~~~~~~~lv  430 (527)
                      ++|+..+.||+|+||.||+|+.. +++.    ||+|.+....                             ...+..++|
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v   94 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence            56899999999999999999853 4443    5888763210                             012345789


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+......
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             EECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTC
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCCc
Confidence            9999999999999887777899999999999999999999   8999999999999999999999999999999875443


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........+|+.|+||
T Consensus       172 ~~~~~~~~~~t~~y~aP  188 (327)
T 3poz_A          172 KEYHAEGGKVPIKWMAL  188 (327)
T ss_dssp             C-------CCCGGGSCH
T ss_pred             ccccccCCCccccccCh
Confidence            33333344568899998

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.87  E-value=1.8e-22  Score=201.84  Aligned_cols=138  Identities=28%  Similarity=0.467  Sum_probs=113.4

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------~~~~~~~~lv~ey~~~  436 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                          +...+..++|||||+|
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~g  100 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKG  100 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCC
Confidence            356999999999999999999864 6899999997531                          2334567899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-C---CcEEEeecccccccCCCCCc
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-N---IVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~---~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+|.+++... ..+++.++..++.+|+.||+|||   +++|+||||||+||++.+ +   +.+||+|||+++....... 
T Consensus       101 g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~-  175 (342)
T 2qr7_A          101 GELLDKILRQ-KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG-  175 (342)
T ss_dssp             CBHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC-
T ss_pred             CcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC-
Confidence            9999998754 45788899999999999999999   999999999999999843 2   3599999999987654322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       .....++|+.|+||
T Consensus       176 -~~~~~~gt~~y~aP  189 (342)
T 2qr7_A          176 -LLMTPCYTANFVAP  189 (342)
T ss_dssp             -CBCCSSCCSSCCCH
T ss_pred             -ceeccCCCccccCH
Confidence             12235689999998

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.87  E-value=3e-22  Score=195.92  Aligned_cols=140  Identities=26%  Similarity=0.402  Sum_probs=116.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                            ....+..++||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence            46799999999999999999985 67899999987531                            12234568999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                       +|+|.+++...+..+++.++..++.|++.||+|||   +++|+||||||+||++   ++++.+||+|||+++.......
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~  163 (296)
T 3uzp_A           88 -GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART  163 (296)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             -CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccc
Confidence             89999999866667899999999999999999999   9999999999999999   4789999999999987654322


Q ss_pred             cc-----ceeccccccccccC
Q 035895          512 SM-----TQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~-----~~~~~~~t~~y~aP  527 (527)
                      ..     ......||+.|+||
T Consensus       164 ~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 3uzp_A          164 HQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             CCBCCCCCSCCCCSCTTTCCH
T ss_pred             ccccccccccccccccccCCh
Confidence            11     12345688999998

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.87  E-value=1e-22  Score=198.82  Aligned_cols=139  Identities=29%  Similarity=0.459  Sum_probs=104.4

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc------------------------------CccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC------------------------------SNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~------------------------------~~~~~~~lv~ey  433 (527)
                      .+.|++.+.||+|+||.||+|+...  .||+|++....                              ...+..++||||
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~  100 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQW  100 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEe
Confidence            4679999999999999999998754  59999975311                              123456799999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.........
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  177 (289)
T 3og7_A          101 CEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSH  177 (289)
T ss_dssp             CCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC------------
T ss_pred             cCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccccc
Confidence            9999999999766667899999999999999999999   8999999999999999999999999999998664322222


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......||+.|+||
T Consensus       178 ~~~~~~gt~~y~aP  191 (289)
T 3og7_A          178 QFEQLSGSILWMAP  191 (289)
T ss_dssp             ------CCCTTCCH
T ss_pred             cccccCCCccccCc
Confidence            22345688999998

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=197.34  Aligned_cols=138  Identities=30%  Similarity=0.455  Sum_probs=112.2

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------------
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------------  420 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------------  420 (527)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++...                                         
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            357899999999999999999985 56899999987421                                         


Q ss_pred             --------------cC--ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCC
Q 035895          421 --------------CS--NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP  484 (527)
Q Consensus       421 --------------~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~  484 (527)
                                    +.  .++..++||||+++|+|.+++.  ...+++.+...++.|++.||+|||   +++|+||||||
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp  165 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT--LKPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKP  165 (298)
T ss_dssp             HTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC--SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred             HhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCH
Confidence                          00  1345689999999999987653  346889999999999999999999   89999999999


Q ss_pred             CCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       485 ~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +||+++.++.+||+|||+++.......  ......||+.|+||
T Consensus       166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP  206 (298)
T 2zv2_A          166 SNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAP  206 (298)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCG
T ss_pred             HHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccCh
Confidence            999999999999999999987654322  22345689999998

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.87  E-value=2.4e-22  Score=202.59  Aligned_cols=146  Identities=28%  Similarity=0.386  Sum_probs=118.7

Q ss_pred             ccccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------
Q 035895          373 RRFSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------  420 (527)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------  420 (527)
                      ..+++++-....++|++.+.||+|+||.||+|+. .+++.||||++...                               
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            3444444445567899999999999999999986 57899999997420                               


Q ss_pred             --cCccceeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC------
Q 035895          421 --CSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD------  491 (527)
Q Consensus       421 --~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~------  491 (527)
                        +...+..++||||+ +|+|.+++.... ..+++.++..++.|++.||+|||   +++|+||||||+|||++.      
T Consensus       103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEE
T ss_pred             ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccccc
Confidence              11235678999999 899999997654 34788899999999999999999   999999999999999975      


Q ss_pred             -------------------CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 -------------------NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 -------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                                         ++.+||+|||+|+......     ....||+.|+||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aP  228 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAP  228 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCH
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCc
Confidence                               7899999999998754321     235678999998

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.87  E-value=2.4e-22  Score=197.22  Aligned_cols=140  Identities=23%  Similarity=0.433  Sum_probs=114.7

Q ss_pred             CCccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec------------------------------cCcc--cee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS------------------------------CSNE--DFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~------------------------------~~~~--~~~  427 (527)
                      +.|++.+.||+|+||.||+|++     .+++.||||+++..                              +..+  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3488899999999999999983     46899999997521                              1112  456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++......+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++...
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  177 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence            8999999999999999766667899999999999999999999   9999999999999999999999999999998875


Q ss_pred             CCCCc-cceeccccccccccC
Q 035895          508 GEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ..... .......+|..|+||
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aP  198 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAP  198 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCH
T ss_pred             CCCcceeccCCCCCCccccCC
Confidence            43321 122234578889998

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=193.84  Aligned_cols=140  Identities=30%  Similarity=0.501  Sum_probs=107.9

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++...                                +...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            456799999999999999999986 57899999997421                                123456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++.++..++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  165 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP  165 (278)
T ss_dssp             EEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence            99999999999999876667899999999999999999999   899999999999999999999999999999876432


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  ......+|+.|+||
T Consensus       166 ~~--~~~~~~~~~~y~aP  181 (278)
T 3cok_A          166 HE--KHYTLCGTPNYISP  181 (278)
T ss_dssp             ------------------
T ss_pred             CC--cceeccCCCCcCCc
Confidence            21  11234578899998

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.87  E-value=2.5e-22  Score=199.68  Aligned_cols=140  Identities=29%  Similarity=0.415  Sum_probs=116.2

Q ss_pred             CCccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec-----------------------------c--CccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS-----------------------------C--SNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~-----------------------------~--~~~~~~~  428 (527)
                      ++|++.+.||+|+||.||+|+.     .+++.||||++...                             +  ......+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5689999999999999999983     46889999997421                             1  1345578


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++......+++.++..++.+++.||+|||   +++|+||||||+||+++.++.+||+|||+++....
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  179 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPL  179 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCT
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceeccc
Confidence            999999999999999875566899999999999999999999   89999999999999999999999999999997754


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... .......+|..|+||
T Consensus       180 ~~~~~~~~~~~~~~~~y~aP  199 (327)
T 3lxl_A          180 DKDYYVVREPGQSPIFWYAP  199 (327)
T ss_dssp             TCSEEECSSCCCSCGGGSCH
T ss_pred             CCccceeeccCCccccccCH
Confidence            3221 122234578889998

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.87  E-value=1.7e-22  Score=212.32  Aligned_cols=142  Identities=25%  Similarity=0.444  Sum_probs=117.4

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEEEEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~lv~e  432 (527)
                      ...++|++.+.||+|+||.||+|+.. ++..||||+++.                            .+..++..++|||
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            34566899999999999999999976 488999999742                            2334556789999


Q ss_pred             eccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++... ...+++..+..++.||+.||+|||   +++|+||||||+|||++.++.+||+|||+++...... 
T Consensus       297 ~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-  372 (495)
T 1opk_A          297 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-  372 (495)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-
T ss_pred             ccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-
Confidence            99999999999864 345889899999999999999999   9999999999999999999999999999999775332 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      ........+++.|+||
T Consensus       373 ~~~~~~~~~~~~y~aP  388 (495)
T 1opk_A          373 YTAHAGAKFPIKWTAP  388 (495)
T ss_dssp             EECCTTCCCCGGGCCH
T ss_pred             eeecCCCcCCcceeCH
Confidence            1122234467789998

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=200.67  Aligned_cols=138  Identities=27%  Similarity=0.421  Sum_probs=106.4

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------cCccceeEEEEEec
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~  434 (527)
                      ..+.|++.+.||+|+||.||+|+.. +++.||||++...                           +...+..++||||+
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  130 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELV  130 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeC
Confidence            3467999999999999999999975 5789999997531                           22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.+++... ..+++.+...++.|++.||+|||   +.+|+||||||+||+++.   ++.+||+|||+++...... 
T Consensus       131 ~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-  205 (349)
T 2w4o_A          131 TGGELFDRIVEK-GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV-  205 (349)
T ss_dssp             CSCBHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------
T ss_pred             CCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc-
Confidence            999999998654 45788899999999999999999   899999999999999975   8999999999998764322 


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||++|+||
T Consensus       206 --~~~~~~gt~~y~aP  219 (349)
T 2w4o_A          206 --LMKTVCGTPGYCAP  219 (349)
T ss_dssp             ---------CGGGSCH
T ss_pred             --ccccccCCCCccCH
Confidence              12235689999998

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.87  E-value=7e-22  Score=194.66  Aligned_cols=137  Identities=29%  Similarity=0.403  Sum_probs=112.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------------Ccc-
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------------SNE-  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------------~~~-  424 (527)
                      .+.|++.+.||+|+||+||+|+. .+++.||||++....                                     ... 
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            56899999999999999999996 578999999985210                                     001 


Q ss_pred             ----ceeEEEEEeccCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 035895          425 ----DFRALVLEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       425 ----~~~~lv~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~D  499 (527)
                          ...++||||+. |+|.+++..... .+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~D  163 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLAD  163 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEECS
T ss_pred             CCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEee
Confidence                14679999997 599999876543 3889999999999999999999   99999999999999999999999999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|+.......   .+...+|++|+||
T Consensus       164 fg~a~~~~~~~~---~~~~~gt~~y~aP  188 (308)
T 3g33_A          164 FGLARIYSYQMA---LTPVVVTLWYRAP  188 (308)
T ss_dssp             CSCTTTSTTCCC---SGGGGCCCSSCCH
T ss_pred             CccccccCCCcc---cCCccccccccCc
Confidence            999987653322   2345689999998

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.87  E-value=1.4e-22  Score=196.90  Aligned_cols=141  Identities=26%  Similarity=0.407  Sum_probs=105.0

Q ss_pred             hcCCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec-----------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS-----------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~-----------------------------~~~~~~~~l  429 (527)
                      ..+.|++.+.||+|+||.||+|+..    .+..||+|++...                             +..++..++
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~l   92 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI   92 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEE
Confidence            3467899999999999999999864    3467999986421                             112345689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...+..+++.....++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.....
T Consensus        93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS  169 (281)
T ss_dssp             EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred             EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence            99999999999999876667899999999999999999999   899999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .. .......+|+.|+||
T Consensus       170 ~~-~~~~~~~~~~~y~aP  186 (281)
T 1mp8_A          170 TY-YKASKGKLPIKWMAP  186 (281)
T ss_dssp             ----------CCGGGCCH
T ss_pred             cc-cccccCCCcccccCh
Confidence            21 122234467789998

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.87  E-value=6.2e-22  Score=196.79  Aligned_cols=136  Identities=27%  Similarity=0.407  Sum_probs=113.8

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------------~~~~~~~~  428 (527)
                      +.|++.+.||+|+||.||+|+.. +|+.||+|++...                                   +..++..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45899999999999999999864 6899999987531                                   12234568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIAK  504 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a~  504 (527)
                      +||||+++|+|.+++... ..+++.++..++.|++.||+|||   +.+|+||||||+||+++.++    .+||+|||+++
T Consensus        91 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS-SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence            999999999999998653 45788899999999999999999   99999999999999998877    89999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....||+.|+||
T Consensus       167 ~~~~~~~---~~~~~gt~~y~aP  186 (326)
T 2y0a_A          167 KIDFGNE---FKNIFGTPEFVAP  186 (326)
T ss_dssp             ECCTTSC---CCCCCSCTTTCCH
T ss_pred             ECCCCCc---cccccCCcCcCCc
Confidence            7753321   2235689999998

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.87  E-value=2.9e-22  Score=202.08  Aligned_cols=137  Identities=26%  Similarity=0.478  Sum_probs=114.0

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...                               +..++..++||
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            35699999999999999999986 46899999998531                               23345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN---IVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|.+.+... ..+++.++..++.||+.||+|||   +++|+||||||+||+++.+   +.+||+|||+++....
T Consensus       108 e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~  183 (362)
T 2bdw_A          108 DLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  183 (362)
T ss_dssp             CCCCSCBHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred             ecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence            999999999988654 45788899999999999999999   8999999999999999854   4699999999987653


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....||++|+||
T Consensus       184 ~~~---~~~~~gt~~y~aP  199 (362)
T 2bdw_A          184 SEA---WHGFAGTPGYLSP  199 (362)
T ss_dssp             CCS---CCCSCSCTTTCCH
T ss_pred             Ccc---cccCCCCccccCH
Confidence            321   2235689999998

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.87  E-value=1.6e-22  Score=196.28  Aligned_cols=143  Identities=22%  Similarity=0.409  Sum_probs=116.5

Q ss_pred             hhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEe
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey  433 (527)
                      ....++|++.+.||+|+||.||+|+..++..||||++...                           +...+..++||||
T Consensus         9 ~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~   88 (279)
T 1qpc_A            9 EVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEY   88 (279)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred             ccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEec
Confidence            3345679999999999999999999888889999987531                           1123456899999


Q ss_pred             ccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++.... ..+++.++..++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++....... 
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-  164 (279)
T 1qpc_A           89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-  164 (279)
T ss_dssp             CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-
T ss_pred             CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-
Confidence            99999999986532 25788899999999999999999   99999999999999999999999999999987753321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......++..|+||
T Consensus       165 ~~~~~~~~~~~y~aP  179 (279)
T 1qpc_A          165 TAREGAKFPIKWTAP  179 (279)
T ss_dssp             ECCTTCCCCTTTSCH
T ss_pred             ccccCCCCccCccCh
Confidence            112233467789998

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.87  E-value=3.1e-22  Score=202.66  Aligned_cols=133  Identities=26%  Similarity=0.467  Sum_probs=106.8

Q ss_pred             ccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEeccCCc
Q 035895          389 ANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYTTNGS  438 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~~~g~  438 (527)
                      ..+.||+|+||.||+|+. .+|+.||+|++..                             .+...+..++||||+++|+
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~  172 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE  172 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence            357899999999999986 5789999999753                             1234456789999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee--CCCCcEEEeecccccccCCCCCcccee
Q 035895          439 LEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL--DDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       439 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill--~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |.+++......+++.++..++.|++.||+|||   +.+|+||||||+||++  +.++.+||+|||+++.......   ..
T Consensus       173 L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~  246 (373)
T 2x4f_A          173 LFDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LK  246 (373)
T ss_dssp             EHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CC
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cc
Confidence            99998776667899999999999999999999   9999999999999999  5678999999999997754322   22


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||++|+||
T Consensus       247 ~~~gt~~y~aP  257 (373)
T 2x4f_A          247 VNFGTPEFLAP  257 (373)
T ss_dssp             CCCSSCTTCCH
T ss_pred             cccCCCcEeCh
Confidence            34689999998

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.87  E-value=1.5e-22  Score=200.79  Aligned_cols=144  Identities=24%  Similarity=0.478  Sum_probs=101.2

Q ss_pred             hhhcCCccccceeccCCceEEEEEEccCC----cEEEEEEEeecc-------------------------------Cccc
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQDG----MEFAIKVFHFSC-------------------------------SNED  425 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~----~~vavK~~~~~~-------------------------------~~~~  425 (527)
                      ....+.|++.+.||+|+||.||+|+....    ..||||++....                               ...+
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   98 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR   98 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence            34456799999999999999999987543    379999874310                               1111


Q ss_pred             ------eeEEEEEeccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc
Q 035895          426 ------FRALVLEYTTNGSLEKVLYSSN-----YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       426 ------~~~lv~ey~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~  494 (527)
                            ..++||||+++|+|.+++....     ..+++.++..++.|++.||+|||   +++|+||||||+||++++++.
T Consensus        99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~  175 (323)
T 3qup_A           99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMT  175 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSC
T ss_pred             cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCC
Confidence                  1289999999999999986432     24788899999999999999999   999999999999999999999


Q ss_pred             EEEeecccccccCCCCCccceeccccccccccC
Q 035895          495 AHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +||+|||+|+...............+++.|+||
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  208 (323)
T 3qup_A          176 VCVADFGLSRKIYSGDYYRQGCASKLPVKWLAL  208 (323)
T ss_dssp             EEECCCCC-----------------CCGGGCCH
T ss_pred             EEEeeccccccccccccccccccccCcccccCc
Confidence            999999999876543322223334567789998

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.87  E-value=2.9e-22  Score=208.77  Aligned_cols=119  Identities=29%  Similarity=0.444  Sum_probs=93.7

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c-----Cccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C-----SNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~-----~~~~~  426 (527)
                      .+.|++.+.||+|+||+||+|+. .+++.||||++...                               +     .....
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            46799999999999999999986 47899999987421                               1     11245


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+. |+|.+++... ..+++..+..++.||+.||+|||   +.+||||||||+|||++.++.+||+|||+|+..
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  206 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTP-VYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV  206 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred             EEEEEeccc-cchhhhcccC-CCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence            789999985 6999998654 45888899999999999999999   899999999999999999999999999999976


Q ss_pred             C
Q 035895          507 T  507 (527)
Q Consensus       507 ~  507 (527)
                      .
T Consensus       207 ~  207 (458)
T 3rp9_A          207 D  207 (458)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.87  E-value=2e-22  Score=194.17  Aligned_cols=140  Identities=26%  Similarity=0.400  Sum_probs=117.3

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||.||+|+..+++.||+|++...                            +..++..++||||++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            4578999999999999999999988899999997531                            233456789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++......+++.....++.+++.||+|||   +++|+||||||+||+++.++.+|++|||+++...... ....
T Consensus        87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~  162 (267)
T 3t9t_A           87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS  162 (267)
T ss_dssp             TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred             CCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc-cccc
Confidence            99999999876667889999999999999999999   9999999999999999999999999999998764321 1112


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....++..|+||
T Consensus       163 ~~~~~~~~y~aP  174 (267)
T 3t9t_A          163 TGTKFPVKWASP  174 (267)
T ss_dssp             TSTTCCGGGCCH
T ss_pred             ccccccccccCh
Confidence            234467789998

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.86  E-value=4.1e-22  Score=205.85  Aligned_cols=139  Identities=30%  Similarity=0.446  Sum_probs=111.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCcc-----ce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNE-----DF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~-----~~  426 (527)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++...                               +...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            46799999999999999999986 56889999997421                               1111     45


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||++ |+|.+++... ..+++..+..++.||+.||+|||   +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~  179 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTP-IFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI  179 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEecCC-cCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence            789999987 5999998653 45889999999999999999999   999999999999999999999999999999976


Q ss_pred             CCCCCc--------------------cceeccccccccccC
Q 035895          507 TGEDQS--------------------MTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~--------------------~~~~~~~~t~~y~aP  527 (527)
                      ......                    ...+..+||++|+||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  220 (432)
T 3n9x_A          180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAP  220 (432)
T ss_dssp             -------------------------------CCCCCTTCCH
T ss_pred             cccccccccccccccccccccccchhccccCCCCCccccCH
Confidence            533211                    112456789999998

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=3.2e-22  Score=202.44  Aligned_cols=139  Identities=26%  Similarity=0.456  Sum_probs=103.0

Q ss_pred             CccccceeccCCceEEEEEEcc--C--CcEEEEEEEee------------------------------cc-CccceeEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARLQ--D--GMEFAIKVFHF------------------------------SC-SNEDFRALV  430 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~--~--~~~vavK~~~~------------------------------~~-~~~~~~~lv  430 (527)
                      .|++.+.||+|+||.||+|+..  +  +..||||.+..                              .+ ..++..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3677899999999999999863  2  24689998642                              11 223466899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++...+..+++.+...++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++......
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~  246 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  246 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence            9999999999999876667888899999999999999999   9999999999999999999999999999998764332


Q ss_pred             Cc--cceeccccccccccC
Q 035895          511 QS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~--~~~~~~~~t~~y~aP  527 (527)
                      ..  ...+...+|+.|+||
T Consensus       247 ~~~~~~~~~~~~~~~y~aP  265 (373)
T 3c1x_A          247 FDSVHNKTGAKLPVKWMAL  265 (373)
T ss_dssp             -----------CCGGGSCH
T ss_pred             cccccccCCCCCcccccCh
Confidence            11  122334567889998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=9.6e-22  Score=208.17  Aligned_cols=188  Identities=25%  Similarity=0.334  Sum_probs=102.3

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      +|+.|++++|.+++ +|..+.   ++|+.|+|++|.|+. +|   ..+++|++|+|++|+|++ +|. +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            66777777777765 344331   356666666666663 33   335666666666666665 333 433  6666666


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccC
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPL  251 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~  251 (527)
                      ++|.+++ +|.   .+++|+.|++++|+|++ +|.   .+++|++|+|++|+|+.+|. +                    
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l--------------------  178 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-L--------------------  178 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-C--------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-h--------------------
Confidence            6666664 343   45566666666666654 333   34556666666666665554 2                    


Q ss_pred             CccccCCCCCCEEEccCCCCCCCChhhhhcCCCC-------CEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSL-------QFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       252 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                          .  ++|++|+|++|+++ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus       179 ----~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          179 ----P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             ----C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ----h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence                2  44555555555544 2333 332  34       55555555555 344444445555555555555555555


Q ss_pred             cchhhhc
Q 035895          325 LSLEKLL  331 (527)
Q Consensus       325 ~~~~~l~  331 (527)
                      ..+..+.
T Consensus       248 ~~l~~l~  254 (571)
T 3cvr_A          248 ESLSQQT  254 (571)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            5555543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.86  E-value=5.5e-22  Score=194.36  Aligned_cols=140  Identities=26%  Similarity=0.415  Sum_probs=111.8

Q ss_pred             CCccccceeccCCceEEEEEEccC----CcEEEEEEEee------------------------------c-cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHF------------------------------S-CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~------------------------------~-~~~~~~~~l  429 (527)
                      ..|++.+.||+|+||.||+|+..+    ...||+|.+..                              . ...++..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            458888999999999999998532    34689998642                              1 123456689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++.++..++.|++.||+|||   +++|+||||||+||++++++.+||+|||+++.....
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence            99999999999999876667889999999999999999999   999999999999999999999999999999876433


Q ss_pred             CCc--cceeccccccccccC
Q 035895          510 DQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~--~~~~~~~~t~~y~aP  527 (527)
                      ...  ...+...+|+.|+||
T Consensus       182 ~~~~~~~~~~~~~~~~y~aP  201 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMAL  201 (298)
T ss_dssp             GGCBC-----CCBCGGGSCH
T ss_pred             chhccccccCCCCCccccCh
Confidence            211  122344567889998

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.86  E-value=5.5e-22  Score=197.07  Aligned_cols=132  Identities=27%  Similarity=0.387  Sum_probs=98.3

Q ss_pred             cceeccCCceEEEEEEcc-CCcEEEEEEEee---------------------------ccCccceeEEEEEeccCCcHHH
Q 035895          390 NNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF---------------------------SCSNEDFRALVLEYTTNGSLEK  441 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~---------------------------~~~~~~~~~lv~ey~~~g~L~~  441 (527)
                      .+.||+|+||.||+|+.. +++.||||++..                           .+..++..++||||+++|+|.+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~   95 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFE   95 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHH
Confidence            378999999999999874 689999999753                           1233456789999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEEeecccccccCCCCCccceecc
Q 035895          442 VLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHLSDFGIAKLLTGEDQSMTQTQT  518 (527)
Q Consensus       442 ~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~  518 (527)
                      ++... ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++   .+||+|||+++.......  .....
T Consensus        96 ~l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~  169 (325)
T 3kn6_A           96 RIKKK-KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PLKTP  169 (325)
T ss_dssp             HHHHC-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------
T ss_pred             HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--ccccc
Confidence            99764 45789999999999999999999   99999999999999997655   899999999987643322  22234


Q ss_pred             ccccccccC
Q 035895          519 LAIIGYMAP  527 (527)
Q Consensus       519 ~~t~~y~aP  527 (527)
                      .+|++|+||
T Consensus       170 ~~t~~y~aP  178 (325)
T 3kn6_A          170 CFTLHYAAP  178 (325)
T ss_dssp             ---------
T ss_pred             CCCcCccCH
Confidence            578999998

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.3e-21  Score=181.42  Aligned_cols=178  Identities=23%  Similarity=0.289  Sum_probs=97.7

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      .++.+++.++.++..+        .++|++|++++|++++..+..+..+. +|++|++++|.+++..+..|..+++|++|
T Consensus        11 ~v~c~~~~l~~~p~~~--------~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--------PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             EEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EEEecCCCccCCCCCC--------CCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            4455555555443321        24566666666666655444444443 56666666666665555555666666666


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      ++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            66666666555555556666666666666665544445556666666666666666555555566666666666666543


Q ss_pred             CCchhhhCCCCccEEEccCCcccccCCccccCC
Q 035895          226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNL  258 (527)
Q Consensus       226 ~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l  258 (527)
                      .      .++.|++|+++.|.+.|.+|..++.+
T Consensus       162 ~------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          162 C------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             C------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             c------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            2      22334444444444444444444433

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.86  E-value=6.2e-22  Score=197.50  Aligned_cols=137  Identities=28%  Similarity=0.377  Sum_probs=114.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------------cCccc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------------CSNED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------------~~~~~  425 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                                     +..++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            45699999999999999999985 57899999987532                                     12234


Q ss_pred             eeEEEEEeccCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          426 FRALVLEYTTNG-SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       426 ~~~lv~ey~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ..++||||+.+| +|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~  178 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAA  178 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccce
Confidence            567999999777 999998754 35789899999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....||++|+||
T Consensus       179 ~~~~~~~---~~~~~gt~~y~aP  198 (335)
T 3dls_A          179 YLERGKL---FYTFCGTIEYCAP  198 (335)
T ss_dssp             ECCTTCC---BCEECSCGGGCCH
T ss_pred             ECCCCCc---eeccCCCccccCh
Confidence            7754322   2235689999998

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.86  E-value=5.4e-22  Score=193.03  Aligned_cols=135  Identities=25%  Similarity=0.441  Sum_probs=112.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                                +..++..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            456999999999999999999875 7899999997531                                1234567899


Q ss_pred             EEeccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC----------------
Q 035895          431 LEYTTNGSLEKVLYSSN---YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD----------------  491 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~----------------  491 (527)
                      |||+++|+|.+++....   ..+++..+..++.|++.||+|||   +++|+||||||+||+++.                
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~  166 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW  166 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-----------------
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence            99999999999997532   45789999999999999999999   999999999999999984                


Q ss_pred             ---CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 ---NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ---~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                         ...+|++|||.++......      ...+|..|+||
T Consensus       167 ~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aP  199 (289)
T 1x8b_A          167 ASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLAN  199 (289)
T ss_dssp             ---CCCEEECCCTTCEETTCSC------CCCCCGGGCCH
T ss_pred             cCCceEEEEcccccccccCCcc------ccCCCccccCh
Confidence               4489999999998764321      23478889998

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.86  E-value=5e-22  Score=199.17  Aligned_cols=133  Identities=34%  Similarity=0.444  Sum_probs=112.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      +.|+..+.||+|+||.||+|+. .+++.||||++...                                +..++..++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            3488899999999999999985 67899999997521                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||++ |++.+.+......+++.++..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....  
T Consensus       134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~--  207 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA--  207 (348)
T ss_dssp             ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred             ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence            9998 5888888766667899999999999999999999   899999999999999999999999999999876422  


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                          ....||++|+||
T Consensus       208 ----~~~~gt~~y~aP  219 (348)
T 1u5q_A          208 ----NSFVGTPYWMAP  219 (348)
T ss_dssp             ----CCCCSCGGGCCH
T ss_pred             ----CcccCCcceeCH
Confidence                234688999998

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.86  E-value=6.3e-22  Score=201.70  Aligned_cols=144  Identities=17%  Similarity=0.260  Sum_probs=116.8

Q ss_pred             hhhcCCccccceeccC--CceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccce
Q 035895          381 LRATDGFSANNLIGRG--SFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDF  426 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G--~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~  426 (527)
                      ....+.|++.+.||+|  +||.||+|+.. +++.||||++...                               +..++.
T Consensus        21 ~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  100 (389)
T 3gni_B           21 LPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNE  100 (389)
T ss_dssp             CCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCE
Confidence            3445679999999999  99999999975 7899999998531                               223456


Q ss_pred             eEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      .++|||||++|+|.+++... ...+++..+..++.|++.||+|||   +++|+||||||+|||++.++.+||+|||.+..
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~  177 (389)
T 3gni_B          101 LWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLS  177 (389)
T ss_dssp             EEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEccccccee
Confidence            78999999999999999764 245788899999999999999999   99999999999999999999999999999875


Q ss_pred             cCCCCCc-----cceeccccccccccC
Q 035895          506 LTGEDQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~-----~~~~~~~~t~~y~aP  527 (527)
                      .......     .......||++|+||
T Consensus       178 ~~~~~~~~~~~~~~~~~~~gt~~y~aP  204 (389)
T 3gni_B          178 MISHGQRQRVVHDFPKYSVKVLPWLSP  204 (389)
T ss_dssp             CEETTEECSCBCCCCTTCTTTGGGSCH
T ss_pred             eccccccccccccccccccccccccCH
Confidence            4322110     111223678899998

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.86  E-value=1.9e-22  Score=204.31  Aligned_cols=135  Identities=14%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc----------------------Ccc----------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC----------------------SNE----------------  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~----------------------~~~----------------  424 (527)
                      ...|+..+.||+|+||.||+|+. .+++.||||++....                      .++                
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            34589999999999999999996 478999999986411                      011                


Q ss_pred             --------------------ceeEEEEEeccCCcHHHHHHhcCCCCCHHHH------HHHHHHHHHHHHHHhcCCCCCeE
Q 035895          425 --------------------DFRALVLEYTTNGSLEKVLYSSNYILDILQR------LNIMIDVTSALEYLHFGYSTPII  478 (527)
Q Consensus       425 --------------------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~ylH~~~~~~ii  478 (527)
                                          ...++|||||+ |+|.+++...+..+++..+      ..++.|++.||+|||   +++|+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv  216 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV  216 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence                                22689999999 8999999865444455555      678899999999999   99999


Q ss_pred             ecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       479 Hrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||||||+|||++.++.+||+|||+|+.....     .....+|+.|+||
T Consensus       217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aP  260 (371)
T 3q60_A          217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPR  260 (371)
T ss_dssp             ETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCH
T ss_pred             cCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcCh
Confidence            9999999999999999999999999876421     1134566899998

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.86  E-value=3.7e-22  Score=203.84  Aligned_cols=137  Identities=28%  Similarity=0.447  Sum_probs=113.3

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cC--ccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CS--NEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~--~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|+.. +|+.||||++...                              +.  .....++||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            46899999999999999999865 5899999997531                              11  122568999


Q ss_pred             EeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee----CCCCcEEEeecccccc
Q 035895          432 EYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDFGIAKL  505 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~Dfg~a~~  505 (527)
                      |||++|+|.+++.....  .+++..+..++.|++.||+|||   +.+|+||||||+||++    +.++.+||+|||+|+.
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~  165 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence            99999999999975432  3889999999999999999999   9999999999999999    7788899999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   .....||..|+||
T Consensus       166 ~~~~~~---~~~~~gt~~y~aP  184 (396)
T 4eut_A          166 LEDDEQ---FVSLYGTEEYLHP  184 (396)
T ss_dssp             CCCGGG---SSCSSSCCTTCCH
T ss_pred             ccCCCc---cccccCCccccCH
Confidence            653321   2235688999998

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.86  E-value=7.1e-22  Score=205.13  Aligned_cols=137  Identities=29%  Similarity=0.407  Sum_probs=112.3

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cC-ccceeEEEEEe
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CS-NEDFRALVLEY  433 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~-~~~~~~lv~ey  433 (527)
                      ...++|++.+.||+|+||.||+|... ++.||||+++..                           +. .+...++||||
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence            34567899999999999999999875 779999997531                           11 22367899999


Q ss_pred             ccCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++...+. .+++.....++.|++.||+|||   +++|+||||||+|||+++++.+||+|||+++.....   
T Consensus       269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~---  342 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---  342 (450)
T ss_dssp             CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---
Confidence            999999999986543 3688889999999999999999   999999999999999999999999999999865321   


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....+++.|+||
T Consensus       343 --~~~~~~~~~y~aP  355 (450)
T 1k9a_A          343 --QDTGKLPVKWTAP  355 (450)
T ss_dssp             ------CCCTTTSCH
T ss_pred             --ccCCCCCcceeCH
Confidence              1123467889998

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.86  E-value=1e-21  Score=198.36  Aligned_cols=137  Identities=32%  Similarity=0.521  Sum_probs=115.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------------cCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------------CSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------------~~~~  424 (527)
                      .++|++.+.||+|+||.||+|+.. +|+.||||+++..                                      +...
T Consensus        93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  172 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS  172 (365)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred             hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence            466999999999999999999975 7999999987421                                      1123


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +..++||||++||+|.+++... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++
T Consensus       173 ~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~  248 (365)
T 2y7j_A          173 SFMFLVFDLMRKGELFDYLTEK-VALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFSC  248 (365)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCccc
Confidence            4568999999999999998754 35788899999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+.....   .....||+.|+||
T Consensus       249 ~~~~~~~---~~~~~gt~~y~aP  268 (365)
T 2y7j_A          249 HLEPGEK---LRELCGTPGYLAP  268 (365)
T ss_dssp             ECCTTCC---BCCCCSCGGGCCH
T ss_pred             ccCCCcc---cccCCCCCCccCh
Confidence            7754322   2335689999998

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.86  E-value=8.3e-22  Score=191.21  Aligned_cols=137  Identities=29%  Similarity=0.460  Sum_probs=112.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      +.++|++.+.||+|+||.||+|+. .+++.||+|++..                                .+...+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            457799999999999999999986 4678999998742                                1223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++... ..+++..+..++.+++.|++|||   +.+|+||||||+||+++.++.+||+|||++......
T Consensus        87 v~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~  162 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  162 (279)
T ss_dssp             EECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred             EEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence            99999999999998754 35788889999999999999999   999999999999999999999999999998765322


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .    .....+|+.|+||
T Consensus       163 ~----~~~~~~~~~y~aP  176 (279)
T 3fdn_A          163 R----RTDLCGTLDYLPP  176 (279)
T ss_dssp             ---------CCCCTTCCH
T ss_pred             c----ccccCCCCCccCH
Confidence            1    2234678899998

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.86  E-value=2.3e-22  Score=208.95  Aligned_cols=142  Identities=25%  Similarity=0.433  Sum_probs=111.2

Q ss_pred             hhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------CccceeEEEEEec
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------SNEDFRALVLEYT  434 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------~~~~~~~lv~ey~  434 (527)
                      ...++|++.+.||+|+||.||+|+...+..||||+++...                           ..++..++||||+
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~  260 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM  260 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhh
Confidence            3456788999999999999999999888889999975311                           1224568999999


Q ss_pred             cCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++... +..+++.+...++.|++.||+|||   +++|+||||||+|||+++++.+||+|||+++...... ..
T Consensus       261 ~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~~  336 (452)
T 1fmk_A          261 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YT  336 (452)
T ss_dssp             TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred             cCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-ee
Confidence            999999999753 245788899999999999999999   9999999999999999999999999999998765322 11


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+++.|+||
T Consensus       337 ~~~~~~~~~~y~aP  350 (452)
T 1fmk_A          337 ARQGAKFPIKWTAP  350 (452)
T ss_dssp             ------CCGGGSCH
T ss_pred             cccCCcccccccCH
Confidence            22234467889998

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.86  E-value=8.5e-22  Score=197.85  Aligned_cols=140  Identities=25%  Similarity=0.411  Sum_probs=114.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------Cc--------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------SN--------  423 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------~~--------  423 (527)
                      .+.|++.+.||+|+||.||+|+. .+|+.||||++....                               ..        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            46799999999999999999987 578999999863210                               01        


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      .+..++||||+++ +|.+.+......+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  171 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA  171 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence            2356899999985 888888766667899999999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCC--ccceeccccccccccC
Q 035895          504 KLLTGEDQ--SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~--~~~~~~~~~t~~y~aP  527 (527)
                      +.+.....  ........+|++|+||
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (351)
T 3mi9_A          172 RAFSLAKNSQPNRYTNRVVTLWYRPP  197 (351)
T ss_dssp             EECCCCSSSSCCCCCSSCSCGGGCCH
T ss_pred             ccccccccccccccCCcccccCccCc
Confidence            87643221  1122345679999998

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.86  E-value=4.4e-22  Score=198.31  Aligned_cols=144  Identities=24%  Similarity=0.380  Sum_probs=115.6

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc-C-----CcEEEEEEEee-------------------------------ccCc
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ-D-----GMEFAIKVFHF-------------------------------SCSN  423 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~-~-----~~~vavK~~~~-------------------------------~~~~  423 (527)
                      ....++|++.+.||+|+||.||+|+.. +     ...||+|++..                               .+..
T Consensus        42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  121 (333)
T 2i1m_A           42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH  121 (333)
T ss_dssp             BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence            344578999999999999999999853 2     34799998742                               1233


Q ss_pred             cceeEEEEEeccCCcHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSS-------------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD  490 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~  490 (527)
                      .+..++||||+++|+|.+++...             ...+++.....++.|++.||+|||   +++|+||||||+||+++
T Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLT  198 (333)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEE
T ss_pred             CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEEC
Confidence            45678999999999999998753             234688899999999999999999   89999999999999999


Q ss_pred             CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          491 DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       491 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .++.+||+|||+++...............+|+.|+||
T Consensus       199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  235 (333)
T 2i1m_A          199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAP  235 (333)
T ss_dssp             GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCH
T ss_pred             CCCeEEECccccccccccccceeecCCCCCCccccCH
Confidence            9999999999999876543322222334567889998

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.86  E-value=2.7e-22  Score=195.54  Aligned_cols=144  Identities=26%  Similarity=0.444  Sum_probs=118.7

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEEE
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRALV  430 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~lv  430 (527)
                      +....++|++.+.||+|+||.||+|+.. +++.||+|++..                            .+..++..++|
T Consensus         8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v   87 (288)
T 3kfa_A            8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   87 (288)
T ss_dssp             TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred             ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence            3445677999999999999999999875 588999999743                            12345567899


Q ss_pred             EEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          431 LEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |||+++|+|.+++.... ..+++..+..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        88 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  164 (288)
T 3kfa_A           88 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  164 (288)
T ss_dssp             EECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred             EEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence            99999999999997643 45789899999999999999999   899999999999999999999999999999877543


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .. .......+|+.|+||
T Consensus       165 ~~-~~~~~~~~~~~y~aP  181 (288)
T 3kfa_A          165 TY-TAHAGAKFPIKWTAP  181 (288)
T ss_dssp             SS-EEETTEEECGGGCCH
T ss_pred             cc-ccccCCccccCcCCh
Confidence            22 222334567889998

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.4e-21  Score=179.55  Aligned_cols=180  Identities=24%  Similarity=0.305  Sum_probs=91.1

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccC
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRG  173 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  173 (527)
                      +.++.+++.++.+ |..+   ..+|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~-p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSC-CSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCC-CCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            4555555555542 2221   22455555555555544444455555555555555555544444444555555555555


Q ss_pred             cccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCc
Q 035895          174 NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS  253 (527)
Q Consensus       174 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~  253 (527)
                      |++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+++++|                       +.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----------------------~~  142 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-----------------------DG  142 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----------------------TT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-----------------------HH
Confidence            5554433334444455555555555554444444444444444444444444433                       23


Q ss_pred             cccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCC
Q 035895          254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLV  307 (527)
Q Consensus       254 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  307 (527)
                      .+..+++|++|++++|.+.+.       +++|++|+++.|+++|.+|..++.++
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             HhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcccc
Confidence            344555566666666655432       33556666666666666666655544

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.86  E-value=9.4e-22  Score=193.94  Aligned_cols=138  Identities=30%  Similarity=0.404  Sum_probs=109.5

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++...                               +..++..++||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence            367999999999999999999874 5899999987321                               22345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+++++|.+++... ..+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus        82 e~~~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  157 (311)
T 4agu_A           82 EYCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD  157 (311)
T ss_dssp             ECCSEEHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EeCCCchHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence            999999999887643 45788899999999999999999   99999999999999999999999999999987653322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......+|.+|+||
T Consensus       158 --~~~~~~~~~~y~aP  171 (311)
T 4agu_A          158 --YYDDEVATRWYRSP  171 (311)
T ss_dssp             ----------GGGCCH
T ss_pred             --ccCCCcCCccccCh
Confidence              12234678899998

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.86  E-value=5.2e-22  Score=197.39  Aligned_cols=141  Identities=25%  Similarity=0.385  Sum_probs=105.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcE----EEEEEEeecc-----------------------------CccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGME----FAIKVFHFSC-----------------------------SNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~----vavK~~~~~~-----------------------------~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+. .+++.    ||+|.+....                             ...+..++
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   93 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL   93 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceE
Confidence            46799999999999999999985 34554    4677653210                             01234578


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++......+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.....
T Consensus        94 v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~  170 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC-------
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCc
Confidence            99999999999999877677899999999999999999999   999999999999999999999999999999877543


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..........+|+.|+||
T Consensus       171 ~~~~~~~~~~~t~~y~aP  188 (327)
T 3lzb_A          171 EKEYHAEGGKVPIKWMAL  188 (327)
T ss_dssp             ---------CCCGGGSCH
T ss_pred             cccccccCCCccccccCH
Confidence            333333344567889998

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=8e-22  Score=196.58  Aligned_cols=141  Identities=28%  Similarity=0.509  Sum_probs=108.0

Q ss_pred             cCCccccceeccCCceEEEEEEccC-----CcEEEEEEEeec------------------------------cCccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD-----GMEFAIKVFHFS------------------------------CSNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~-----~~~vavK~~~~~------------------------------~~~~~~~~  428 (527)
                      .+.|+..+.||+|+||.||+|+...     +..||||+++..                              +...+..+
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            3467888999999999999998642     246999997531                              23345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++....
T Consensus       123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  199 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  199 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence            999999999999999876667899999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... .......+|+.|+||
T Consensus       200 ~~~~~~~~~~~~~~~~y~aP  219 (333)
T 1mqb_A          200 DPEATYTTSGGKIPIRWTAP  219 (333)
T ss_dssp             -----------CCCGGGSCH
T ss_pred             ccccccccCCCCccccccCc
Confidence            3211 112233457789998

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.86  E-value=3.1e-22  Score=200.61  Aligned_cols=138  Identities=22%  Similarity=0.303  Sum_probs=107.0

Q ss_pred             CCccccceeccCCceEEEEEEcc----CCcEEEEEEEeecc---------------------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSC---------------------------------------  421 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~~---------------------------------------  421 (527)
                      ++|++.+.||+|+||.||+|+..    ++..||||++....                                       
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56999999999999999999975    57889999875310                                       


Q ss_pred             -C----ccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC--c
Q 035895          422 -S----NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI--V  494 (527)
Q Consensus       422 -~----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~--~  494 (527)
                       .    .....++||||+ +|+|.+++...+ .+++.++..++.|++.||+|||   +++|+||||||+||+++.++  .
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~  191 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQ  191 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTS
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCc
Confidence             0    145678999999 999999987544 6899999999999999999999   89999999999999998777  9


Q ss_pred             EEEeecccccccCCCCCc-----cceeccccccccccC
Q 035895          495 AHLSDFGIAKLLTGEDQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~~~~~-----~~~~~~~~t~~y~aP  527 (527)
                      +||+|||+|+.+......     .......||+.|+||
T Consensus       192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  229 (345)
T 2v62_A          192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSL  229 (345)
T ss_dssp             EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCH
T ss_pred             EEEEeCCCceecccccccccchhccccccCCCccccCH
Confidence            999999999876432111     111334689999998

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=6.7e-22  Score=198.24  Aligned_cols=139  Identities=32%  Similarity=0.496  Sum_probs=111.3

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCcccee
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      ..+.|++.+.||+|+||.||+|+.. +|+.||||++...                                  +...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            4577999999999999999999974 6899999987421                                  1234456


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++ +|.+++......+++.+...++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.+.
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFG  163 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred             EEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence            899999986 899988766666788888999999999999999   9999999999999999999999999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....  ..+...+|++|+||
T Consensus       164 ~~~~--~~~~~~~t~~y~aP  181 (346)
T 1ua2_A          164 SPNR--AYTHQVVTRWYRAP  181 (346)
T ss_dssp             SCCC--CCCCSCCCCTTCCH
T ss_pred             CCcc--cCCcccccccccCc
Confidence            3322  22335678999998

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.86  E-value=1e-21  Score=192.51  Aligned_cols=141  Identities=30%  Similarity=0.454  Sum_probs=111.1

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------c-------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------C-------------  421 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~-------------  421 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                            +             
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            35699999999999999999986 57899999987421                            0             


Q ss_pred             CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       422 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      ...+..++||||+++|+|.+++...+..+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+|++|||
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg  161 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFG  161 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeCc
Confidence            1134568999999999999999876666788888999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCC------------ccceeccccccccccC
Q 035895          502 IAKLLTGEDQ------------SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~------------~~~~~~~~~t~~y~aP  527 (527)
                      +++.......            ........+|..|+||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  199 (303)
T 1zy4_A          162 LAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVAT  199 (303)
T ss_dssp             CCSCTTC-------------------------CTTSCH
T ss_pred             chhhcccccchhccccccccccccccccCCCcccccCc
Confidence            9987642210            0111234578889998

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.86  E-value=5.4e-22  Score=193.50  Aligned_cols=138  Identities=28%  Similarity=0.367  Sum_probs=105.3

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++...                               +..++..++|
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            356799999999999999999986 57899999987421                               2234567899


Q ss_pred             EEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          431 LEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      |||+++ +|.+++..   .+..+++..+..++.|++.||+|||   ++ +|+||||||+||+++.++.+||+|||+++..
T Consensus        85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T 3fme_A           85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL  160 (290)
T ss_dssp             EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred             Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            999985 88777654   3456899999999999999999999   87 9999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....   .....+|++|+||
T Consensus       161 ~~~~~---~~~~~~t~~y~aP  178 (290)
T 3fme_A          161 VDDVA---KDIDAGCKPYMAP  178 (290)
T ss_dssp             ------------CCCCCCSCH
T ss_pred             ccccc---ccccCCCccccCh
Confidence            53321   2234578899998

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.86  E-value=5.6e-22  Score=191.94  Aligned_cols=140  Identities=24%  Similarity=0.396  Sum_probs=115.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                              +..++..++|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            467999999999999999999865 7899999997531                              122345689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+++|+|.+++... ..+++.+...++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||.++........
T Consensus        86 ~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  161 (276)
T 2yex_A           86 YCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  161 (276)
T ss_dssp             CCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             ecCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence            99999999988543 45788899999999999999999   899999999999999999999999999999876432221


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......+|..|+||
T Consensus       162 ~~~~~~~~~~~y~aP  176 (276)
T 2yex_A          162 RLLNKMCGTLPYVAP  176 (276)
T ss_dssp             CCBCCCCSCGGGCCG
T ss_pred             hcccCCccccCccCh
Confidence            122345678899998

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.86  E-value=6.5e-22  Score=200.72  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=107.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------c---Ccc---------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------C---SNE---------------  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------~---~~~---------------  424 (527)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||++...                    .   .++               
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46688999999999999999996 56899999997521                    0   000               


Q ss_pred             ----------------c-----eeEEEEEeccCCcHHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 035895          425 ----------------D-----FRALVLEYTTNGSLEKVLYSSNYI------LDILQRLNIMIDVTSALEYLHFGYSTPI  477 (527)
Q Consensus       425 ----------------~-----~~~lv~ey~~~g~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~ylH~~~~~~i  477 (527)
                                      +     ..++||||+ +|+|.+++...+..      +++..+..|+.||+.||+|||   +++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence                            0     267999999 68999999754322      225777889999999999999   8999


Q ss_pred             EecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       478 iHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +||||||+|||++.++.+||+|||+|+....     ......| ++|+||
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aP  271 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPP  271 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccCh
Confidence            9999999999999999999999999986432     1233456 889998

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.86  E-value=1.8e-21  Score=197.94  Aligned_cols=139  Identities=29%  Similarity=0.428  Sum_probs=110.5

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------c--------------
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------C--------------  421 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~--------------  421 (527)
                      ...+.|++.+.||+|+||+||+|+. .+|+.||||++...                         +              
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~   83 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPP   83 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC-----------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCcccccccccc
Confidence            3467899999999999999999985 67899999987421                         0              


Q ss_pred             ------------------------CccceeEEEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 035895          422 ------------------------SNEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYS  474 (527)
Q Consensus       422 ------------------------~~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~  474 (527)
                                              ..+...++||||+++ +|.+.+..   .+..+++..+..++.|+++||+|||   +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  159 (383)
T 3eb0_A           84 DDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---S  159 (383)
T ss_dssp             --------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             cccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence                                    112236799999984 88777753   3456889999999999999999999   9


Q ss_pred             CCeEecCCCCCCeeeC-CCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          475 TPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       475 ~~iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+|+||||||+||+++ .++.+||+|||+|+.......   .....+|.+|+||
T Consensus       160 ~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aP  210 (383)
T 3eb0_A          160 LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAP  210 (383)
T ss_dssp             TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCH
T ss_pred             CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCH
Confidence            9999999999999998 689999999999997653322   2234578889998

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.85  E-value=1.6e-21  Score=192.65  Aligned_cols=139  Identities=26%  Similarity=0.363  Sum_probs=107.5

Q ss_pred             CCcccc-ceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          385 DGFSAN-NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~-~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      +.|++. +.||+|+||.||+|+. .+++.||||++...                              +..++..++|||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            457774 7899999999999985 57899999998531                              123356689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecccccccCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV---AHLSDFGIAKLLTGE  509 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~Dfg~a~~~~~~  509 (527)
                      |+++|+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.   +||+|||+++.....
T Consensus        92 ~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  167 (316)
T 2ac3_A           92 KMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN  167 (316)
T ss_dssp             CCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred             cCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence            99999999999764 35788889999999999999999   899999999999999987765   999999999865422


Q ss_pred             CCc-----cceeccccccccccC
Q 035895          510 DQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-----~~~~~~~~t~~y~aP  527 (527)
                      ...     .......||+.|+||
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aP  190 (316)
T 2ac3_A          168 GDCSPISTPELLTPCGSAEYMAP  190 (316)
T ss_dssp             --------------CCSGGGCCH
T ss_pred             CccccccccccccccCCcCccCh
Confidence            110     111234588999998

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.85  E-value=3.8e-22  Score=194.58  Aligned_cols=135  Identities=26%  Similarity=0.417  Sum_probs=112.2

Q ss_pred             cCCccccceeccCCceEEEEEEccC-C-------cEEEEEEEee-----------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD-G-------MEFAIKVFHF-----------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~-~-------~~vavK~~~~-----------------------------~~~~~~~  426 (527)
                      .++|++.+.||+|+||.||+|+... +       ..||+|++..                             .+..++.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            3568999999999999999998642 3       4799998742                             1233456


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc--------EEEe
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV--------AHLS  498 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--------~kl~  498 (527)
                      .++||||+++|+|.+++...+..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.        +|++
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~  163 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS  163 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeec
Confidence            68999999999999999876666899999999999999999999   999999999999999998876        9999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.....      ....+|++|+||
T Consensus       164 Dfg~~~~~~~~------~~~~~~~~y~aP  186 (289)
T 4fvq_A          164 DPGISITVLPK------DILQERIPWVPP  186 (289)
T ss_dssp             CCCSCTTTSCH------HHHHHTTTTSCH
T ss_pred             cCcccccccCc------cccCCcCcccCH
Confidence            99999765321      123467889998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=8.9e-22  Score=208.43  Aligned_cols=188  Identities=24%  Similarity=0.342  Sum_probs=148.7

Q ss_pred             ccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCC
Q 035895           63 IVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDL  142 (527)
Q Consensus        63 ~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  142 (527)
                      .++.|+|++|.|++++..+        +++|++|+|++|+|+. +|    ...++|+.|+|++|.|++ +|. +..  +|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--------~~~L~~L~Ls~N~l~~-ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--------PPQITVLEITQNALIS-LP----ELPASLEYLDACDNRLST-LPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--------CTTCSEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred             CccEEEeCCCCCCccCHhH--------cCCCCEEECcCCCCcc-cc----cccCCCCEEEccCCCCCC-cch-hhc--CC
Confidence            5789999999999876543        2689999999999995 56    224589999999999997 555 655  99


Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      ++|+|++|++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|+|++|+|++ +|. |.  ++|+.|+|++|
T Consensus       123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            999999999998 444   68999999999999996 665   67899999999999997 566 66  89999999999


Q ss_pred             CCCCCchhhhCCCCc-------cEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCC
Q 035895          223 ELTSIPSILWNLKDI-------LYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLK  283 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L-------~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  283 (527)
                      +|+.+|. +..  +|       +.|++++|.+. .+|..+..+++|++|+|++|.+++.+|..+..+.
T Consensus       191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          191 LLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            9999987 443  55       67777777666 3566666677777777777777666666665543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.85  E-value=9.7e-22  Score=204.62  Aligned_cols=135  Identities=26%  Similarity=0.275  Sum_probs=105.1

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cC------cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CS------NE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~------~~  424 (527)
                      ..+.|++.+.||+|+||+||+|+. .+++.||||++...                               +.      ..
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            357899999999999999999985 56899999998521                               00      11


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+++ ++.+.+..   .+++.++..++.|++.||+|||   +++|+||||||+|||++.++.+||+|||+|+
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~  212 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  212 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred             CeEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence            346899999986 46666632   4788889999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ..+..+||++|+||
T Consensus       213 ~~~~~~---~~~~~~gt~~y~aP  232 (464)
T 3ttj_A          213 TAGTSF---MMTPYVVTRYYRAP  232 (464)
T ss_dssp             ----CC---CC----CCCTTCCH
T ss_pred             ecCCCc---ccCCCcccccccCH
Confidence            765322   22346789999998

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.85  E-value=7.2e-22  Score=198.49  Aligned_cols=139  Identities=19%  Similarity=0.288  Sum_probs=112.7

Q ss_pred             CCccccceeccCCceEEEEEEcc---------CCcEEEEEEEeec-----------------------------------
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ---------DGMEFAIKVFHFS-----------------------------------  420 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~---------~~~~vavK~~~~~-----------------------------------  420 (527)
                      ++|++.+.||+|+||.||+|+..         +++.||||++...                                   
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            57999999999999999999875         3789999997421                                   


Q ss_pred             ----c-CccceeEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-
Q 035895          421 ----C-SNEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-  493 (527)
Q Consensus       421 ----~-~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-  493 (527)
                          + ..++..++||||+ +|+|.+++... +..+++.++..++.|++.||+|||   +++|+||||||+||+++.++ 
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~~~~~~  197 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFVDPEDQ  197 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEEETTEE
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEEcCCCC
Confidence                0 1246778999999 99999999865 356899999999999999999999   89999999999999999988 


Q ss_pred             -cEEEeecccccccCCCCCc-----cceeccccccccccC
Q 035895          494 -VAHLSDFGIAKLLTGEDQS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 -~~kl~Dfg~a~~~~~~~~~-----~~~~~~~~t~~y~aP  527 (527)
                       .+||+|||+++.+......     .......||+.|+||
T Consensus       198 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  237 (352)
T 2jii_A          198 SQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISM  237 (352)
T ss_dssp             EEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCH
T ss_pred             ceEEEecCcceeeccCCCccccccccccccccCCccccCH
Confidence             9999999999876532211     111234688999998

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.85  E-value=2.2e-21  Score=189.00  Aligned_cols=136  Identities=28%  Similarity=0.441  Sum_probs=112.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeeccC----------------------------------ccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSCS----------------------------------NEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~~----------------------------------~~~~~~  428 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||+|++.....                                  ..+..+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPR   97 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTE
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCe
Confidence            46799999999999999999986 5789999999742110                                  012236


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeCCCCc-----EEEeecc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLDDNIV-----AHLSDFG  501 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~-----~kl~Dfg  501 (527)
                      +||||+++|+|.+.+......+++..+..++.|++.|++|||   +++  |+||||||+||+++.++.     +||+|||
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg  174 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG  174 (287)
T ss_dssp             EEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred             EEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence            999999999999999877677899999999999999999999   888  999999999999987776     9999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.....     .....+|+.|+||
T Consensus       175 ~~~~~~~~-----~~~~~g~~~y~aP  195 (287)
T 4f0f_A          175 LSQQSVHS-----VSGLLGNFQWMAP  195 (287)
T ss_dssp             TCBCCSSC-----EECCCCCCTTSCG
T ss_pred             cccccccc-----ccccCCCccccCc
Confidence            99854321     2335688899998

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.85  E-value=2.3e-21  Score=197.00  Aligned_cols=138  Identities=30%  Similarity=0.362  Sum_probs=112.5

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec----------------------------------cCcccee
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      ..++|++.+.||+|+||+||+|+.. +++.||||++...                                  +..++..
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            3578999999999999999999864 6889999997421                                  1123566


Q ss_pred             EEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--CCCcEEEeeccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--DNIVAHLSDFGIAK  504 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~Dfg~a~  504 (527)
                      ++||||++ |+|.+++.... ..+++..+..++.|++.||+||| .+..+||||||||+|||++  .++.+||+|||+|+
T Consensus       132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH-~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~  209 (382)
T 2vx3_A          132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLA-TPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC  209 (382)
T ss_dssp             EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHT-STTTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhc-cCCCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence            79999996 59999997654 45889999999999999999999 2357899999999999995  57889999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....     .....+|+.|+||
T Consensus       210 ~~~~~-----~~~~~~t~~y~aP  227 (382)
T 2vx3_A          210 QLGQR-----IYQYIQSRFYRSP  227 (382)
T ss_dssp             ETTCC-----CCSSCSCGGGCCH
T ss_pred             ecccc-----cccccCCccccCh
Confidence            76432     1235678899998

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.85  E-value=1e-21  Score=190.87  Aligned_cols=137  Identities=31%  Similarity=0.570  Sum_probs=114.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeecc-----------------------------------------C
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFSC-----------------------------------------S  422 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~~-----------------------------------------~  422 (527)
                      ++|+..+.||+|+||.||+|+.. +++.||+|++....                                         .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRS   90 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CC
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccccc
Confidence            45899999999999999999975 78999999975310                                         0


Q ss_pred             ccceeEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      .....++||||+++|+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  167 (284)
T 2a19_B           91 KTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFG  167 (284)
T ss_dssp             EEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCT
T ss_pred             CcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEEECcch
Confidence            123468999999999999999754 346889999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.......   .....+|+.|+||
T Consensus       168 ~~~~~~~~~~---~~~~~~~~~y~aP  190 (284)
T 2a19_B          168 LVTSLKNDGK---RTRSKGTLRYMSP  190 (284)
T ss_dssp             TCEESSCCSC---CCCCCSCCTTSCH
T ss_pred             hheecccccc---ccccCCcccccCh
Confidence            9987754321   2234578899998

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.85  E-value=1e-21  Score=202.06  Aligned_cols=137  Identities=26%  Similarity=0.348  Sum_probs=107.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc------------------------------------Cccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC------------------------------------SNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~------------------------------------~~~~~  426 (527)
                      .+.|.+.+.||+|+||.||+|.. .+++.||||++....                                    ...+.
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~  213 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED  213 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCc
Confidence            46799999999999999999986 568999999975310                                    01234


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN---IVAHLSDFGIA  503 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~---~~~kl~Dfg~a  503 (527)
                      .++||||+++|+|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+||+++.+   +.+||+|||+|
T Consensus       214 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a  289 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVGN-KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS  289 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCSSTT
T ss_pred             eEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeecccc
Confidence            57999999999999887643 45789999999999999999999   8999999999999999644   46999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +......   ......||++||||
T Consensus       290 ~~~~~~~---~~~~~~gt~~y~aP  310 (419)
T 3i6u_A          290 KILGETS---LMRTLCGTPTYLAP  310 (419)
T ss_dssp             TSCC--------------CTTCCT
T ss_pred             eecCCCc---cccccCCCCCccCc
Confidence            9765322   12335689999999

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=194.03  Aligned_cols=141  Identities=27%  Similarity=0.436  Sum_probs=114.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec-----------------------------cCc--ccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS-----------------------------CSN--EDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~-----------------------------~~~--~~~~  427 (527)
                      .+.|++.+.||+|+||.||+|+.     .+++.||||++...                             +..  ....
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            35688999999999999999983     46899999997421                             111  2256


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+++|+|.+++...+..+++.++..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++...
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~  196 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP  196 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence            8999999999999999877667899999999999999999999   8999999999999999999999999999998875


Q ss_pred             CCCCcc-ceeccccccccccC
Q 035895          508 GEDQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~-~~~~~~~t~~y~aP  527 (527)
                      ...... ......++..|+||
T Consensus       197 ~~~~~~~~~~~~~~~~~y~aP  217 (326)
T 2w1i_A          197 QDKEYYKVKEPGESPIFWYAP  217 (326)
T ss_dssp             SSCSEEECSSCCSCCGGGCCH
T ss_pred             ccccccccccCCCCceeEECc
Confidence            432211 11223467789998

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.85  E-value=9.5e-22  Score=191.53  Aligned_cols=137  Identities=29%  Similarity=0.428  Sum_probs=109.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      +.|.+.+.||+|+||.||+|+. .+++.||+|++...                              +...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            4588999999999999999986 46899999997532                              2234566899999


Q ss_pred             ccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccC
Q 035895          434 TTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       434 ~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~  507 (527)
                      +++|+|.+.+...   +..+++..+..++.|++.||+|||   +.+|+||||||+||++   +.++.+||+|||+++...
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence            9999999988643   356889999999999999999999   9999999999999999   456889999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   ......+|..|+||
T Consensus       179 ~~~---~~~~~~~t~~y~aP  195 (285)
T 3is5_A          179 SDE---HSTNAAGTALYMAP  195 (285)
T ss_dssp             -----------CTTGGGCCH
T ss_pred             Ccc---cCcCcccccCcCCh
Confidence            332   12335688999998

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.85  E-value=1.5e-21  Score=194.82  Aligned_cols=137  Identities=28%  Similarity=0.400  Sum_probs=101.1

Q ss_pred             cCCcccc-ceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------c----CccceeEEEEE
Q 035895          384 TDGFSAN-NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------C----SNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~-~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------~----~~~~~~~lv~e  432 (527)
                      .++|.+. ++||+|+||.||+|+.. +++.||||++...                         +    ......++|||
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e  106 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIME  106 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEe
Confidence            4678885 56999999999999875 6899999997431                         0    11344789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      |+++|+|.+++...+ ..+++.++..++.|++.||+|||   +++|+||||||+||+++.   ++.+||+|||+++....
T Consensus       107 ~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~  183 (336)
T 3fhr_A          107 CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ  183 (336)
T ss_dssp             CCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc
Confidence            999999999998653 35889999999999999999999   899999999999999975   45699999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..    .....+|++|+||
T Consensus       184 ~~----~~~~~~t~~y~aP  198 (336)
T 3fhr_A          184 NA----LQTPCYTPYYVAP  198 (336)
T ss_dssp             -------------------
T ss_pred             cc----cccCCCCcCccCh
Confidence            21    1234578899998

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.7e-21  Score=196.79  Aligned_cols=133  Identities=26%  Similarity=0.356  Sum_probs=105.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCcc------c
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNE------D  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~------~  425 (527)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++...                               +..+      .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            46799999999999999999986 57899999997321                               0111      2


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+ +++|.+++..  ..+++.....++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  177 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  177 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence            348999999 8899999876  35788889999999999999999   99999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....     .+..++|.+|+||
T Consensus       178 ~~~~-----~~~~~~t~~y~aP  194 (367)
T 1cm8_A          178 ADSE-----MTGYVVTRWYRAP  194 (367)
T ss_dssp             CCSS-----CCSSCSCGGGCCT
T ss_pred             cccc-----cCcCcCCCCcCCH
Confidence            6432     2345688999998

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.85  E-value=2e-21  Score=195.99  Aligned_cols=144  Identities=26%  Similarity=0.344  Sum_probs=112.4

Q ss_pred             HHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------------
Q 035895          377 YQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------------  420 (527)
Q Consensus       377 ~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------------  420 (527)
                      .+++....++|++.+.||+|+||.||+|+..+|+.||||++...                                    
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            44566778999999999999999999999888999999987321                                    


Q ss_pred             ----c-----CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC
Q 035895          421 ----C-----SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD  491 (527)
Q Consensus       421 ----~-----~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~  491 (527)
                          +     ......++||||++ |+|.+.+......+++..+..++.|++.||+|||   +.+|+||||||+||+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLAD  169 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECT
T ss_pred             eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcC
Confidence                0     11124589999998 5898888776667899999999999999999999   899999999999999999


Q ss_pred             CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.+||+|||+++......   ......+|.+|+||
T Consensus       170 ~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aP  202 (362)
T 3pg1_A          170 NNDITICDFNLAREDTADA---NKTHYVTHRWYRAP  202 (362)
T ss_dssp             TCCEEECCTTC------------------CGGGCCH
T ss_pred             CCCEEEEecCccccccccc---ccceecccceecCc
Confidence            9999999999998654322   22335678889998

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.5e-21  Score=190.37  Aligned_cols=141  Identities=26%  Similarity=0.424  Sum_probs=114.1

Q ss_pred             cCCccccc-eeccCCceEEEEEEcc---CCcEEEEEEEeecc-----------------------------CccceeEEE
Q 035895          384 TDGFSANN-LIGRGSFGSVYKARLQ---DGMEFAIKVFHFSC-----------------------------SNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~-~lg~G~~g~vy~~~~~---~~~~vavK~~~~~~-----------------------------~~~~~~~lv  430 (527)
                      .++|.+.+ .||+|+||.||+|...   +++.||||+++...                             ...+..++|
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv   87 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLV   87 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEE
Confidence            34566666 9999999999999853   67889999985311                             123456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  164 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  164 (287)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence            9999999999999766667899999999999999999999   9999999999999999999999999999998775332


Q ss_pred             Ccc-ceeccccccccccC
Q 035895          511 QSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~-~~~~~~~t~~y~aP  527 (527)
                      ... ......+|+.|+||
T Consensus       165 ~~~~~~~~~~~~~~y~aP  182 (287)
T 1u59_A          165 SYYTARSAGKWPLKWYAP  182 (287)
T ss_dssp             CEECCCCSSCCCGGGCCH
T ss_pred             ceeeccccccccccccCH
Confidence            211 12233467889998

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.85  E-value=1.7e-21  Score=193.20  Aligned_cols=136  Identities=28%  Similarity=0.418  Sum_probs=113.8

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------------~~~~~~~~  428 (527)
                      +.|++.+.||+|+||.||+|+.. +|+.||+|++...                                   +...+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            45899999999999999999864 6899999987531                                   12234568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIAK  504 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a~  504 (527)
                      +||||+++|+|.+++... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++    .+|++|||+++
T Consensus        92 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQK-ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             EEECCCCSCBHHHHHHTC-SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence            999999999999999754 45788899999999999999999   89999999999999999887    79999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....||+.|+||
T Consensus       168 ~~~~~~~---~~~~~gt~~y~aP  187 (321)
T 2a2a_A          168 EIEDGVE---FKNIFGTPEFVAP  187 (321)
T ss_dssp             ECCTTCC---CCCCCSCGGGCCH
T ss_pred             ecCcccc---ccccCCCCCccCc
Confidence            7654321   2234688999998

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.85  E-value=1.1e-21  Score=190.66  Aligned_cols=141  Identities=25%  Similarity=0.416  Sum_probs=112.2

Q ss_pred             hcCCccccceeccCCceEEEEEEccC----CcEEEEEEEeec-----------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHFS-----------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~-----------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+...    +..||+|++...                             +..++..++
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   89 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWI   89 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEE
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEE
Confidence            35679999999999999999998542    346999987531                             112344579


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...+..+++.....++.+++.||+|||   +++|+||||||+||+++.++.+|++|||+++.....
T Consensus        90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred             EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence            99999999999999876667899999999999999999999   999999999999999999999999999999876543


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .. .......+++.|+||
T Consensus       167 ~~-~~~~~~~~~~~y~aP  183 (281)
T 3cc6_A          167 DY-YKASVTRLPIKWMSP  183 (281)
T ss_dssp             -------CCCCCGGGCCH
T ss_pred             cc-cccccCCCCcceeCc
Confidence            21 122234467889998

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=191.76  Aligned_cols=139  Identities=32%  Similarity=0.413  Sum_probs=111.9

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------cCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~  435 (527)
                      .+.|++.+.||+|+||.||+|+.. +|+.||||++...                           +...+..++||||++
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~  107 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCG  107 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCC
Confidence            467999999999999999999865 5899999987531                           223456689999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++......+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus       108 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~  182 (314)
T 3com_A          108 AGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KR  182 (314)
T ss_dssp             TEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CB
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc--cc
Confidence            99999999765667899999999999999999999   99999999999999999999999999999987653321  12


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....+|..|+||
T Consensus       183 ~~~~~~~~y~aP  194 (314)
T 3com_A          183 NTVIGTPFWMAP  194 (314)
T ss_dssp             CCCCSCGGGCCH
T ss_pred             CccCCCCCccCh
Confidence            234578899998

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=3e-22  Score=215.38  Aligned_cols=226  Identities=15%  Similarity=0.052  Sum_probs=123.1

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCc-ccccCCCCCCEEeccCcccccccChhhhcCcccCeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSIS-ITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDL  195 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L  195 (527)
                      +|+.|+++++.. ..+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++++...+.++..+..+++|+.|++
T Consensus       271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            566666666432 2455566666677777777766553322 23456667777777633222233444455666777777


Q ss_pred             e-----------cccCCCCC-CccccCCccCceeeCCCCCCCC-CchhhhC-CCCccEEEcc----CCccccc-----CC
Q 035895          196 R-----------GNKLSGSI-PTCFGNLTALRNLHLDSNELTS-IPSILWN-LKDILYLDFW----SNLFVGP-----LP  252 (527)
Q Consensus       196 ~-----------~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~-lp~~~~~-l~~L~~l~l~----~n~~~~~-----~p  252 (527)
                      +           .|.++... +..+..+++|++|+++.|.++. .+..+.. +++|+.|+++    .|.+++.     ++
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence            6           24444321 1123446667777776666654 2233332 5666666664    4444432     22


Q ss_pred             ccccCCCCCCEEEccCCC--CCCCChhhhh-cCCCCCEEEccccccee-ecCCCCCCCCCCCEEeCCCCccccc-Cccch
Q 035895          253 SKIGNLKVLTRIDFSRNN--LLGDIPTTIQ-GLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEI-IPLSL  327 (527)
Q Consensus       253 ~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~  327 (527)
                      ..+..+++|++|++++|.  +++..+..+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++...
T Consensus       430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            234556667777775433  4433333333 36667777777776654 2333445566677777777766543 23334


Q ss_pred             hhhccCCeeEeeeeee
Q 035895          328 EKLLYLNILLIVVVIL  343 (527)
Q Consensus       328 ~~l~~L~~L~~~~~~~  343 (527)
                      ..++.|+.|+++.+.+
T Consensus       510 ~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHCSSCCEEEEESCBC
T ss_pred             HhcCccCeeECcCCcC
Confidence            4566666666666554

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.85  E-value=2.3e-21  Score=187.85  Aligned_cols=136  Identities=29%  Similarity=0.355  Sum_probs=113.6

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||.||+|+.. ++..||+|++...                             +...+..++||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence            45899999999999999999864 5789999987531                             22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.+++... ..+++.....++.+++.|++|||   +++|+||||||+||++   +.++.+|++|||+++.......
T Consensus        89 ~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~  164 (277)
T 3f3z_A           89 TGGELFERVVHK-RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM  164 (277)
T ss_dssp             CSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC
T ss_pred             CCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc
Confidence            999999988754 35788899999999999999999   9999999999999999   7889999999999987653321


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....+|++|+||
T Consensus       165 ---~~~~~~t~~y~aP  177 (277)
T 3f3z_A          165 ---MRTKVGTPYYVSP  177 (277)
T ss_dssp             ---BCCCCSCTTTCCH
T ss_pred             ---hhccCCCCCccCh
Confidence               2234588899998

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.85  E-value=1.9e-21  Score=200.51  Aligned_cols=135  Identities=24%  Similarity=0.317  Sum_probs=111.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------------cCccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------------CSNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------------~~~~~~~~  428 (527)
                      ...|++.+.||+|+||.||+|+. .+++.||||++...                                  +...+..+
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            35699999999999999999975 46899999998421                                  11235668


Q ss_pred             EEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc--EEEeecccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV--AHLSDFGIAKL  505 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~--~kl~Dfg~a~~  505 (527)
                      +||||+. |+|.+++.... ..+++..+..++.||+.||+|||   +++||||||||+|||++.++.  +||+|||+|+.
T Consensus       176 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~  251 (429)
T 3kvw_A          176 MTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCY  251 (429)
T ss_dssp             EEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             EEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeeccccee
Confidence            9999996 69999887654 34889999999999999999999   899999999999999998887  99999999986


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....     .....+|++||||
T Consensus       252 ~~~~-----~~~~~gt~~y~aP  268 (429)
T 3kvw_A          252 EHQR-----VYTYIQSRFYRAP  268 (429)
T ss_dssp             TTCC-----CCSSCSCGGGCCH
T ss_pred             cCCc-----ccccCCCCCccCh
Confidence            5432     1234678999998

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.85  E-value=1.6e-21  Score=204.62  Aligned_cols=136  Identities=26%  Similarity=0.429  Sum_probs=112.6

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEee-------------------------------ccCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF-------------------------------SCSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~-------------------------------~~~~~~~~~lv~e  432 (527)
                      +.|++.+.||+|+||+||+|+.. +++.||||++..                               .+...+..++|||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            45899999999999999999864 789999999742                               1223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||++|+|.+.+... ..+++..+..++.|++.||+|||   +++|+||||||+||+++   .++.+||+|||+|+.....
T Consensus       102 ~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  177 (486)
T 3mwu_A          102 LYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (486)
T ss_dssp             CCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC
T ss_pred             cCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC
Confidence            99999999988654 35788899999999999999999   99999999999999995   4578999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .   ......||++|+||
T Consensus       178 ~---~~~~~~gt~~y~aP  192 (486)
T 3mwu_A          178 T---KMKDRIGTAYYIAP  192 (486)
T ss_dssp             -------CCTTGGGGCCG
T ss_pred             C---ccCCCcCCCCCCCH
Confidence            2   12345689999998

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.85  E-value=1.1e-21  Score=193.63  Aligned_cols=145  Identities=21%  Similarity=0.391  Sum_probs=105.3

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEcc----CCcEEEEEEEeecc-------------------------------Ccc
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFSC-------------------------------SNE  424 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~~-------------------------------~~~  424 (527)
                      +....+.|++.+.||+|+||.||+|+..    +++.||+|++....                               ...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            3444567899999999999999999753    35689999975310                               011


Q ss_pred             -----ceeEEEEEeccCCcHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc
Q 035895          425 -----DFRALVLEYTTNGSLEKVLYS-----SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV  494 (527)
Q Consensus       425 -----~~~~lv~ey~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~  494 (527)
                           ...++||||+++|+|.+++..     ....+++.++..++.+++.||+|||   +++|+||||||+||+++.++.
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~  185 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMT  185 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSC
T ss_pred             cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCc
Confidence                 134899999999999999853     2345889999999999999999999   999999999999999999999


Q ss_pred             EEEeecccccccCCCCCccceeccccccccccC
Q 035895          495 AHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       495 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +||+|||+++...............+++.|+||
T Consensus       186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  218 (313)
T 3brb_A          186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAI  218 (313)
T ss_dssp             EEECSCSCC----------------CCGGGSCH
T ss_pred             EEEeecCcceecccccccCcccccCCCccccCc
Confidence            999999999876543222222334467789997

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.85  E-value=2.5e-21  Score=187.40  Aligned_cols=138  Identities=25%  Similarity=0.465  Sum_probs=109.0

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+.. +++.||||++...                                +..++..++
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFM   88 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEE
Confidence            3567999999999999999999975 7899999997421                                223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++++|.+++...+ .+++.+...++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus        89 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           89 VMEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             EEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred             EEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence            999999999999997643 5788899999999999999999   899999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   .....+++.|+||
T Consensus       165 ~~---~~~~~~~~~y~aP  179 (276)
T 2h6d_A          165 EF---LRTSCGSPNYAAP  179 (276)
T ss_dssp             ---------------CCT
T ss_pred             cc---eecccCCccccCH
Confidence            21   1234578889998

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.85  E-value=9.9e-22  Score=195.13  Aligned_cols=148  Identities=28%  Similarity=0.416  Sum_probs=114.6

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCc-
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSN-  423 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~-  423 (527)
                      ++..++....+.|++.+.||+|+||.||+|+. .+++.||||++...                             +.. 
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   93 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKK   93 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence            44445555678899999999999999999986 57899999997421                             001 


Q ss_pred             -----cceeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          424 -----EDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       424 -----~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                           .+..++||||+++|+|.+++.... ..++......++.|++.||+|||   +.+|+||||||+||+++.++.+||
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl  170 (326)
T 2x7f_A           94 NPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKL  170 (326)
T ss_dssp             C--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEE
T ss_pred             cCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEE
Confidence                 346789999999999999997643 45788888999999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+++.......  ......+|..|+||
T Consensus       171 ~Dfg~~~~~~~~~~--~~~~~~~~~~y~aP  198 (326)
T 2x7f_A          171 VDFGVSAQLDRTVG--RRNTFIGTPYWMAP  198 (326)
T ss_dssp             CCCTTTC---------------CCGGGCCH
T ss_pred             eeCcCceecCcCcc--ccccccCCccccCh
Confidence            99999987643211  12234578899998

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.85  E-value=3.4e-21  Score=187.26  Aligned_cols=137  Identities=26%  Similarity=0.474  Sum_probs=113.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...                               +..++..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            46799999999999999999986 46899999997531                               22345668999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV---AHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~Dfg~a~~~~~  508 (527)
                      ||+++|+|.+.+... ..+++.....++.+++.|++|||   +.+|+||||||+||+++.++.   +||+|||++.....
T Consensus        85 e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           85 DLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             CCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             ecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            999999999888754 35788899999999999999999   899999999999999976554   99999999987653


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....+|++|+||
T Consensus       161 ~~~---~~~~~~~~~y~aP  176 (284)
T 3kk8_A          161 SEA---WHGFAGTPGYLSP  176 (284)
T ss_dssp             SCB---CCCSCSCGGGCCH
T ss_pred             Ccc---ccCCCCCcCCcCc
Confidence            321   2235688999998

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.85  E-value=9.7e-22  Score=195.41  Aligned_cols=141  Identities=23%  Similarity=0.390  Sum_probs=108.7

Q ss_pred             cCCccccceeccCCceEEEEEEc------cCCcEEEEEEEeec------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHFS------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~~------------------------------~~~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|+.      .+++.||||++...                              +...+..
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            46799999999999999999984      35778999997421                              2234566


Q ss_pred             EEEEEeccCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEe
Q 035895          428 ALVLEYTTNGSLEKVLYSSN------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLS  498 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~  498 (527)
                      ++||||+++|+|.+++....      ..+++.++..++.+++.||+|||   +.+|+||||||+||+++.   +..+|++
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~  185 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG  185 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence            89999999999999998653      34788899999999999999999   899999999999999984   4569999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++...............+|+.|+||
T Consensus       186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  214 (327)
T 2yfx_A          186 DFGMARDIYRASYYRKGGCAMLPVKWMPP  214 (327)
T ss_dssp             CCHHHHHHHC------CCGGGSCGGGCCH
T ss_pred             ccccccccccccccccCCCcCCCcceeCH
Confidence            99999865433222222334578889998

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.85  E-value=2.7e-21  Score=203.26  Aligned_cols=136  Identities=26%  Similarity=0.452  Sum_probs=110.0

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      +.|++.+.||+|+||.||+|+.. ++..||||++...                               +...+..++|||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            35899999999999999999864 7899999997531                               223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||++|+|.+.+... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.   ++.+||+|||+|+.....
T Consensus       117 ~~~~g~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~  192 (494)
T 3lij_A          117 CYKGGELFDEIIHR-MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ  192 (494)
T ss_dssp             CCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred             cCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence            99999999988654 35788889999999999999999   999999999999999975   456999999999877543


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .   ......||++|+||
T Consensus       193 ~---~~~~~~gt~~y~aP  207 (494)
T 3lij_A          193 K---KMKERLGTAYYIAP  207 (494)
T ss_dssp             B---CBCCCCSCTTTCCH
T ss_pred             c---cccccCCCcCeeCH
Confidence            2   12345689999998

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.85  E-value=3.2e-21  Score=185.85  Aligned_cols=133  Identities=20%  Similarity=0.375  Sum_probs=111.8

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCcc--ceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNE--DFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~--~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.+ ++.||||++...                               +...  +..++|
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI   87 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence            457899999999999999999985 889999997521                               1122  566899


Q ss_pred             EEeccCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      |||+++|+|.+++..... .+++.++..++.|++.||+|||   +++  |+||||||+||+++.++.++++|||++....
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~  164 (271)
T 3kmu_A           88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ  164 (271)
T ss_dssp             EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred             ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence            999999999999986543 4899999999999999999999   878  9999999999999999999999999876532


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .       ....+|+.|+||
T Consensus       165 ~-------~~~~~t~~y~aP  177 (271)
T 3kmu_A          165 S-------PGRMYAPAWVAP  177 (271)
T ss_dssp             C-------TTCBSCGGGSCH
T ss_pred             c-------cCccCCccccCh
Confidence            2       124578889998

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.85  E-value=5e-22  Score=210.64  Aligned_cols=143  Identities=24%  Similarity=0.424  Sum_probs=116.4

Q ss_pred             hhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------CccceeEEEEEe
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------SNEDFRALVLEY  433 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------~~~~~~~lv~ey  433 (527)
                      ....+.|++.+.||+|+||.||+|++..+..||||+++...                           ..++..++||||
T Consensus       263 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~  342 (535)
T 2h8h_A          263 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEY  342 (535)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECC
T ss_pred             ecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeeh
Confidence            33456789999999999999999999888889999985311                           122456899999


Q ss_pred             ccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++|+|.+++... +..+++.+...++.||+.||+|||   +++||||||||+|||+++++.+||+|||+++...... .
T Consensus       343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~  418 (535)
T 2h8h_A          343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y  418 (535)
T ss_dssp             CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-H
T ss_pred             hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-e
Confidence            9999999999753 245788899999999999999999   9999999999999999999999999999998764321 1


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      .......++..||||
T Consensus       419 ~~~~~~~~~~~y~aP  433 (535)
T 2h8h_A          419 TARQGAKFPIKWTAP  433 (535)
T ss_dssp             HTTCSTTSCGGGSCH
T ss_pred             ecccCCcCcccccCH
Confidence            112234467889998

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=211.22  Aligned_cols=140  Identities=26%  Similarity=0.421  Sum_probs=108.0

Q ss_pred             CCccccc-eeccCCceEEEEEEcc---CCcEEEEEEEeecc-----------------------------CccceeEEEE
Q 035895          385 DGFSANN-LIGRGSFGSVYKARLQ---DGMEFAIKVFHFSC-----------------------------SNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~-~lg~G~~g~vy~~~~~---~~~~vavK~~~~~~-----------------------------~~~~~~~lv~  431 (527)
                      +.+.+.+ .||+|+||.||+|..+   ++..||||+++...                             ...+..++||
T Consensus       335 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~  414 (613)
T 2ozo_A          335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM  414 (613)
T ss_dssp             TSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEE
T ss_pred             cceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEE
Confidence            3444444 7999999999999764   56789999975311                             0123467999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |||++|+|.+++......+++.++..++.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.+.....
T Consensus       415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~  491 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS  491 (613)
T ss_dssp             ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred             EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence            999999999999776667899999999999999999999   89999999999999999999999999999997653322


Q ss_pred             cc-ceeccccccccccC
Q 035895          512 SM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~-~~~~~~~t~~y~aP  527 (527)
                      .. ......+++.||||
T Consensus       492 ~~~~~~~~~~~~~y~AP  508 (613)
T 2ozo_A          492 YYTARSAGKWPLKWYAP  508 (613)
T ss_dssp             ----------CCTTSCH
T ss_pred             eeeeccCCCCccceeCH
Confidence            11 11223356789998

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.85  E-value=1.3e-21  Score=191.88  Aligned_cols=143  Identities=27%  Similarity=0.368  Sum_probs=107.1

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee------------------------------ccCccceeEEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF------------------------------SCSNEDFRALV  430 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~------------------------------~~~~~~~~~lv  430 (527)
                      ...++|++.+.||+|+||.||+|+. .+++.||||++..                              .+..++..++|
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            3457899999999999999999986 4688999997632                              11234566899


Q ss_pred             EEeccCCcHHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          431 LEYTTNGSLEKVLYS-------SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      |||+++|+|.+++..       ....+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            999999999999864       2345889999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCCc---cceeccccccccccC
Q 035895          504 KLLTGEDQS---MTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~---~~~~~~~~t~~y~aP  527 (527)
                      +........   .......+|+.|+||
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (303)
T 2vwi_A          169 AFLATGGDITRNKVRKTFVGTPCWMAP  195 (303)
T ss_dssp             HHCC---------------CCCTTCCH
T ss_pred             heeccCCCccchhhhcccCCCccccCH
Confidence            876432111   111234578899998

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=2e-21  Score=190.24  Aligned_cols=138  Identities=23%  Similarity=0.410  Sum_probs=110.1

Q ss_pred             ccccceeccCCceEEEEEEccC----CcEEEEEEEeec------------------------------cC-ccceeEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHFS------------------------------CS-NEDFRALVL  431 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~------------------------------~~-~~~~~~lv~  431 (527)
                      |+..+.||+|+||.||+|+..+    +..||+|++...                              +. .+...++||
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            5667999999999999998532    337999987421                              11 223348999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ||+.+|+|.+++......+++.++..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.......
T Consensus       103 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  179 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREY  179 (298)
T ss_dssp             CCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGG
T ss_pred             ecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcc
Confidence            999999999999876667889999999999999999999   89999999999999999999999999999986643221


Q ss_pred             c--cceeccccccccccC
Q 035895          512 S--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~--~~~~~~~~t~~y~aP  527 (527)
                      .  .......+|..|+||
T Consensus       180 ~~~~~~~~~~~~~~y~aP  197 (298)
T 3pls_A          180 YSVQQHRHARLPVKWTAL  197 (298)
T ss_dssp             GCSCCSSCTTCGGGGSCH
T ss_pred             cccccCcCCCCCccccCh
Confidence            1  112234567889987

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.85  E-value=4e-21  Score=191.49  Aligned_cols=135  Identities=21%  Similarity=0.336  Sum_probs=111.9

Q ss_pred             cCCccccceeccCCceEEEEEEc--cCCcEEEEEEEeec----------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL--QDGMEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~--~~~~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      .+.|++.+.||+|+||.||+|..  .+++.||||++...                                  +...+..
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            35799999999999999999985  46889999997421                                  1234567


Q ss_pred             EEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---------------
Q 035895          428 ALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---------------  491 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---------------  491 (527)
                      ++||||+ +++|.+++...+ ..+++..+..++.|++.||+|||   +++|+||||||+||+++.               
T Consensus        93 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~  168 (339)
T 1z57_A           93 CIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDE  168 (339)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEE
T ss_pred             EEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcccccc
Confidence            8999999 889999987654 35788899999999999999999   899999999999999987               


Q ss_pred             ----CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 ----NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                          ++.+||+|||+++......     ....+|++|+||
T Consensus       169 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aP  203 (339)
T 1z57_A          169 RTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAP  203 (339)
T ss_dssp             EEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCH
T ss_pred             ccccCCCceEeeCcccccCcccc-----ccccCCccccCh
Confidence                6789999999998754321     234678999998

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.85  E-value=2e-21  Score=194.21  Aligned_cols=141  Identities=26%  Similarity=0.425  Sum_probs=114.6

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccc----eeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNED----FRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~----~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|+. +++.||||++...                            +..++    ..++||
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~  119 (342)
T 1b6c_B           41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS  119 (342)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEE
T ss_pred             cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEE
Confidence            46799999999999999999987 4899999997421                            11122    678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-----YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||+++|+|.+++...  .+++.++..++.+++.||+|||..     ++++|+||||||+||+++.++.+||+|||+++..
T Consensus       120 e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~  197 (342)
T 1b6c_B          120 DYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  197 (342)
T ss_dssp             CCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEE
T ss_pred             eecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceec
Confidence            999999999999753  578899999999999999999932     2578999999999999999999999999999876


Q ss_pred             CCCCCcc--ceeccccccccccC
Q 035895          507 TGEDQSM--TQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~--~~~~~~~t~~y~aP  527 (527)
                      .......  ......+|+.|+||
T Consensus       198 ~~~~~~~~~~~~~~~gt~~y~aP  220 (342)
T 1b6c_B          198 DSATDTIDIAPNHRVGTKRYMAP  220 (342)
T ss_dssp             ETTTTEEEECCCSCCCCGGGCCH
T ss_pred             cccccccccccccCCcCcccCCH
Confidence            5432211  12334688999998

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.85  E-value=3.9e-21  Score=186.95  Aligned_cols=136  Identities=28%  Similarity=0.453  Sum_probs=114.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++..                                .+..++..++|
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            467999999999999999999864 678999999742                                12234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++|+|.+++...+ .+++.....++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||++.......
T Consensus        93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  168 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR  168 (284)
T ss_dssp             ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred             EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence            99999999999987643 5788899999999999999999   9999999999999999999999999999997654321


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                          .....++..|+||
T Consensus       169 ----~~~~~~~~~y~aP  181 (284)
T 2vgo_A          169 ----RRTMCGTLDYLPP  181 (284)
T ss_dssp             ----BCCCCSCGGGCCH
T ss_pred             ----cccccCCCCcCCH
Confidence                1234578899998

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.85  E-value=3.8e-21  Score=188.02  Aligned_cols=138  Identities=23%  Similarity=0.365  Sum_probs=114.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||+|++...                                +..++..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            356899999999999999999875 5789999987421                                2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++++|.+++... ..+++.++..++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||+++......
T Consensus        94 ~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  169 (294)
T 2rku_A           94 LELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG  169 (294)
T ss_dssp             EECCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence            9999999999988654 35788899999999999999999   8999999999999999999999999999998764322


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......+|..|+||
T Consensus       170 ~--~~~~~~~~~~y~aP  184 (294)
T 2rku_A          170 E--RKKVLCGTPNYIAP  184 (294)
T ss_dssp             C--CBCCCCSCCSSCCH
T ss_pred             c--ccccccCCCCcCCc
Confidence            1  12234578899998

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.85  E-value=4e-21  Score=190.19  Aligned_cols=136  Identities=27%  Similarity=0.412  Sum_probs=110.2

Q ss_pred             ccccceeccCCceEEEEEEc-----cCCcEEEEEEEeec------------------------------cC--ccceeEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-----QDGMEFAIKVFHFS------------------------------CS--NEDFRAL  429 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-----~~~~~vavK~~~~~------------------------------~~--~~~~~~l  429 (527)
                      |++.+.||+|+||.||+|.+     .+++.||||++...                              +.  .....++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            48899999999999999864     36889999997531                              11  1345689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++|+|.+++...  .+++.++..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       113 v~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  187 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG  187 (318)
T ss_dssp             EECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred             EEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence            99999999999999654  4788999999999999999999   999999999999999999999999999999987543


Q ss_pred             CCc-cceeccccccccccC
Q 035895          510 DQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-~~~~~~~~t~~y~aP  527 (527)
                      ... .......+|..|+||
T Consensus       188 ~~~~~~~~~~~~~~~y~aP  206 (318)
T 3lxp_A          188 HEYYRVREDGDSPVFWYAP  206 (318)
T ss_dssp             CSEEEC---CCCCGGGCCH
T ss_pred             ccccccccCCCCCceeeCh
Confidence            221 112234577889998

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.85  E-value=4e-21  Score=188.70  Aligned_cols=136  Identities=32%  Similarity=0.437  Sum_probs=114.0

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey  433 (527)
                      +.|+..+.||+|+||.||+|+. .+++.||||++...                              +..++..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            5589999999999999999985 57899999997531                              1234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++..  ..+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  
T Consensus       102 ~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--  174 (303)
T 3a7i_A          102 LGGGSALDLLEP--GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--  174 (303)
T ss_dssp             CTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--
T ss_pred             CCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcccc--
Confidence            999999999854  45789999999999999999999   89999999999999999999999999999987653321  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+|..|+||
T Consensus       175 ~~~~~~~~~~y~aP  188 (303)
T 3a7i_A          175 KRNTFVGTPFWMAP  188 (303)
T ss_dssp             CBCCCCSCGGGCCH
T ss_pred             ccCccCCCcCccCH
Confidence            12234678899998

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.85  E-value=3.7e-21  Score=191.29  Aligned_cols=134  Identities=25%  Similarity=0.412  Sum_probs=111.0

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------cCc--cceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------CSN--EDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------~~~--~~~~~lv~ey  433 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                           +..  ....++||||
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~  114 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEH  114 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEEC
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEec
Confidence            36799999999999999999985 67899999997521                           111  3456899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCCCc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +++++|.+++..    ++..++..++.|++.||+|||   +++|+||||||+||+++.++ .+||+|||+|+....... 
T Consensus       115 ~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-  186 (330)
T 3nsz_A          115 VNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE-  186 (330)
T ss_dssp             CCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC-
T ss_pred             cCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc-
Confidence            999999998743    678888999999999999999   99999999999999999766 899999999987654322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....+|..|+||
T Consensus       187 --~~~~~~~~~y~aP  199 (330)
T 3nsz_A          187 --YNVRVASRYFKGP  199 (330)
T ss_dssp             --CCSCCSCGGGCCH
T ss_pred             --cccccccccccCh
Confidence              2234578889998

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=190.50  Aligned_cols=138  Identities=29%  Similarity=0.420  Sum_probs=105.1

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc-------------------------CccceeEEEEEeccCCc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC-------------------------SNEDFRALVLEYTTNGS  438 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~-------------------------~~~~~~~lv~ey~~~g~  438 (527)
                      .++|++.+.||+|+||.||+|+.. ++.||||++....                         ...+..++||||+++|+
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~   85 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGS   85 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCB
T ss_pred             HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCC
Confidence            356889999999999999999875 6889999974210                         01234679999999999


Q ss_pred             HHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc-EEEeecccccccCCCCCccce
Q 035895          439 LEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV-AHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       439 L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~-~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      |.+++...+.  .+++.....++.|+++||+|||..+.++|+||||||+||+++.++. +||+|||+++.....     .
T Consensus        86 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-----~  160 (307)
T 2eva_A           86 LYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-----M  160 (307)
T ss_dssp             HHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------------
T ss_pred             HHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-----c
Confidence            9999976542  4678888999999999999999333389999999999999998876 799999999865422     1


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....||+.|+||
T Consensus       161 ~~~~gt~~y~aP  172 (307)
T 2eva_A          161 TNNKGSAAWMAP  172 (307)
T ss_dssp             ----CCTTSSCH
T ss_pred             ccCCCCCceECh
Confidence            234578899998

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.85  E-value=2.1e-21  Score=187.40  Aligned_cols=134  Identities=31%  Similarity=0.505  Sum_probs=103.2

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEee---------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF---------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~---------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||.||+|+.. ++.||||+++.                                 .+..++..++|
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            467999999999999999999975 78999998642                                 12234566899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC---eEecCCCCCCeeeCC--------CCcEEEee
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP---IIHCDLKPHNKLLDD--------NIVAHLSD  499 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~---iiHrdlk~~nill~~--------~~~~kl~D  499 (527)
                      |||+++|+|.+++..  ..+++.....++.|++.|++|||   +++   |+||||||+||+++.        ++.+|++|
T Consensus        85 ~e~~~~~~L~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D  159 (271)
T 3dtc_A           85 MEFARGGPLNRVLSG--KRIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD  159 (271)
T ss_dssp             EECCTTEEHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred             EEcCCCCCHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence            999999999999853  46788899999999999999999   777   999999999999986        77899999


Q ss_pred             cccccccCCCCCccceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+++......    .....+|+.|+||
T Consensus       160 fg~~~~~~~~~----~~~~~~~~~y~aP  183 (271)
T 3dtc_A          160 FGLAREWHRTT----KMSAAGAYAWMAP  183 (271)
T ss_dssp             CCC-----------------CCGGGSCH
T ss_pred             CCccccccccc----ccCCCCccceeCH
Confidence            99998764322    1234578899998

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.84  E-value=3.7e-21  Score=191.92  Aligned_cols=138  Identities=23%  Similarity=0.365  Sum_probs=115.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      .+.|.+.+.||+|+||.||+|+.. +++.||+|++...                                +...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            457999999999999999999864 5789999987421                                2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++++|.+++... ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++......
T Consensus       120 ~e~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  195 (335)
T 2owb_A          120 LELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG  195 (335)
T ss_dssp             ECCCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EecCCCCCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence            9999999999988654 45788899999999999999999   8999999999999999999999999999998764322


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......+|..|+||
T Consensus       196 ~--~~~~~~gt~~y~aP  210 (335)
T 2owb_A          196 E--RKKVLCGTPNYIAP  210 (335)
T ss_dssp             C--CBCCCCSCCSSCCH
T ss_pred             c--cccccCCCccccCH
Confidence            1  12234578899998

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.84  E-value=1.3e-21  Score=193.09  Aligned_cols=147  Identities=25%  Similarity=0.376  Sum_probs=111.5

Q ss_pred             ccHHHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------------c
Q 035895          375 FSYQELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------------C  421 (527)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------------~  421 (527)
                      +.++.+....+.|++.+.||+|+||.||+|+..+++.||||++...                                 +
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   97 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   97 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence            3444444455679999999999999999999988999999997421                                 1


Q ss_pred             CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       422 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      ..++..++||| +.+|+|.+++... ..+++.++..++.++++||+|||   +.+|+||||||+||++++ +.+||+|||
T Consensus        98 ~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg  171 (313)
T 3cek_A           98 ITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFG  171 (313)
T ss_dssp             ECSSEEEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCS
T ss_pred             ecCCEEEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeecc
Confidence            23345679999 5678999999764 35788889999999999999999   899999999999999964 899999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++...............||+.|+||
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (313)
T 3cek_A          172 IANQMQPDTTSVVKDSQVGTVNYMPP  197 (313)
T ss_dssp             SSCC--------------CCGGGCCH
T ss_pred             ccccccCccccccccCCCCCCCcCCH
Confidence            99876543322222345688999998

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.84  E-value=2e-21  Score=193.22  Aligned_cols=137  Identities=24%  Similarity=0.409  Sum_probs=109.3

Q ss_pred             CCcccc-ceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEE
Q 035895          385 DGFSAN-NLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~-~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv  430 (527)
                      +.|.+. +.||+|+||.||+|+.. +++.||+|++...                                +...+..++|
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv  107 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILI  107 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEE
Confidence            446666 89999999999999864 6899999987531                                1234566899


Q ss_pred             EEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeccccccc
Q 035895          431 LEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLL  506 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~  506 (527)
                      |||+++|+|.+++... ...+++.++..++.|++.||+|||   +++|+||||||+||+++.   ++.+||+|||+++..
T Consensus       108 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~  184 (327)
T 3lm5_A          108 LEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI  184 (327)
T ss_dssp             EECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC
T ss_pred             EEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCcccccc
Confidence            9999999999988543 346889999999999999999999   999999999999999987   789999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....   .....+|++|+||
T Consensus       185 ~~~~~---~~~~~gt~~y~aP  202 (327)
T 3lm5_A          185 GHACE---LREIMGTPEYLAP  202 (327)
T ss_dssp             ------------CCCGGGCCH
T ss_pred             CCccc---cccccCCcCccCC
Confidence            53321   2235688999998

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.84  E-value=2.6e-21  Score=190.79  Aligned_cols=140  Identities=27%  Similarity=0.339  Sum_probs=108.3

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|+.. +++.||+|++...                                +..++..++
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            3578999999999999999999864 7899999997421                                123456689


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      ||||+++++|.+++... ..+++.++..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       112 v~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  187 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDE  187 (309)
T ss_dssp             EEECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred             EEEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence            99999999999999754 35788899999999999999999   899999999999999999999999999999876533


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      .. .......+++.|+||
T Consensus       188 ~~-~~~~~~~~~~~y~aP  204 (309)
T 2h34_A          188 KL-TQLGNTVGTLYYMAP  204 (309)
T ss_dssp             ----------CCGGGCCG
T ss_pred             cc-ccccccCCCcCccCH
Confidence            21 112234578899998

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.84  E-value=4.5e-21  Score=197.24  Aligned_cols=136  Identities=34%  Similarity=0.499  Sum_probs=108.1

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------c------CccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------C------SNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------~------~~~~~~~lv~e  432 (527)
                      ..|+..+.||+|+||+||+|+.. +|+.||||++...                         +      ..+...++|||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  133 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD  133 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehh
Confidence            35889999999999999999974 6899999987421                         0      11123568999


Q ss_pred             eccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~~~~  508 (527)
                      |+++ ++.+.+..   .+..+++.....++.||++||+|||   +++|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus       134 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          134 YVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             CCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             cccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            9986 66665542   3456889899999999999999999   9999999999999999954 6789999999997643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....+|.+|+||
T Consensus       210 ~~~---~~~~~~t~~y~aP  225 (420)
T 1j1b_A          210 GEP---NVSYICSRYYRAP  225 (420)
T ss_dssp             TCC---CCSCCSCTTSCCH
T ss_pred             CCC---ceeeeeCCCcCCH
Confidence            322   2235678999998

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.84  E-value=2e-21  Score=193.52  Aligned_cols=139  Identities=30%  Similarity=0.460  Sum_probs=110.0

Q ss_pred             hcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ..++|++.+.||+|+||.||+|+.. +++.||||++...                               +...+..++|
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            4567999999999999999999864 5899999987421                               2234567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+++++|.++.... ..+++..+..++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus       103 ~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  178 (331)
T 4aaa_A          103 FEFVDHTILDDLELFP-NGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG  178 (331)
T ss_dssp             EECCSEEHHHHHHHST-TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred             EecCCcchHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence            9999999998876543 45789999999999999999999   9999999999999999999999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......+|.+|+||
T Consensus       179 ~--~~~~~~~t~~y~aP  193 (331)
T 4aaa_A          179 E--VYDDEVATRWYRAP  193 (331)
T ss_dssp             -------CCCCCTTCCH
T ss_pred             c--ccCCCcCCccccCc
Confidence            1  12234578899998

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.84  E-value=1.5e-21  Score=195.52  Aligned_cols=144  Identities=31%  Similarity=0.391  Sum_probs=110.0

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee----------------------------------ccCccc
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF----------------------------------SCSNED  425 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~----------------------------------~~~~~~  425 (527)
                      ....+.|++.+.||+|+||.||+|+. .+++.||+|++..                                  .+..++
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            34456799999999999999999986 5688999998742                                  122345


Q ss_pred             eeEEEEEeccCCcHHHHHHhc---------------------------------------CCCCCHHHHHHHHHHHHHHH
Q 035895          426 FRALVLEYTTNGSLEKVLYSS---------------------------------------NYILDILQRLNIMIDVTSAL  466 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~~l  466 (527)
                      ..++|||||++|+|.+++...                                       ...+++.....++.|++.||
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  181 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL  181 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence            678999999999999988421                                       11124556678999999999


Q ss_pred             HHHhcCCCCCeEecCCCCCCeeeCCCC--cEEEeecccccccCCCCC--ccceeccccccccccC
Q 035895          467 EYLHFGYSTPIIHCDLKPHNKLLDDNI--VAHLSDFGIAKLLTGEDQ--SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       467 ~ylH~~~~~~iiHrdlk~~nill~~~~--~~kl~Dfg~a~~~~~~~~--~~~~~~~~~t~~y~aP  527 (527)
                      +|||   +.+|+||||||+||+++.++  .+||+|||+++.+.....  ........||+.|+||
T Consensus       182 ~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP  243 (345)
T 3hko_A          182 HYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAP  243 (345)
T ss_dssp             HHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCH
T ss_pred             HHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCc
Confidence            9999   89999999999999998766  899999999987643211  1122345689999998

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.84  E-value=1.6e-21  Score=193.96  Aligned_cols=140  Identities=25%  Similarity=0.404  Sum_probs=107.5

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRA  428 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~  428 (527)
                      ....+.|++.+.||+|+||+||+|+. .+++.||||++...                               +..++..+
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34467899999999999999999985 57899999987421                               12345668


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee-----CCCCcEEEeecccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL-----DDNIVAHLSDFGIA  503 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-----~~~~~~kl~Dfg~a  503 (527)
                      +||||+++ +|.+++...+ .+++..+..++.|++.||+|||   +++|+||||||+||++     ++++.+||+|||+|
T Consensus       110 lv~e~~~~-~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a  184 (329)
T 3gbz_A          110 LIFEYAEN-DLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA  184 (329)
T ss_dssp             EEEECCSE-EHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred             EEEecCCC-CHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence            99999985 9999987653 5788899999999999999999   8999999999999999     45566999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.......  ..+...+|.+|+||
T Consensus       185 ~~~~~~~~--~~~~~~~t~~y~aP  206 (329)
T 3gbz_A          185 RAFGIPIR--QFTHEIITLWYRPP  206 (329)
T ss_dssp             HHHC-------------CCTTCCH
T ss_pred             cccCCccc--ccCCCcCCccccCH
Confidence            87643221  12334578899998

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.84  E-value=5.5e-21  Score=201.42  Aligned_cols=137  Identities=28%  Similarity=0.450  Sum_probs=112.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------------------  420 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------------------  420 (527)
                      .+.|++.+.||+|+||+||+|+.. +++.||||++...                                          
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467999999999999999999864 6889999997531                                          


Q ss_pred             cCccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEE
Q 035895          421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHL  497 (527)
Q Consensus       421 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl  497 (527)
                      +...+..++|||||++|+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++   .+||
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl  190 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKI  190 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEE
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEE
Confidence            12234568999999999999988754 35789999999999999999999   99999999999999998765   6999


Q ss_pred             eecccccccCCCCCccceeccccccccccC
Q 035895          498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       498 ~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +|||+|+......   ......||++|+||
T Consensus       191 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aP  217 (504)
T 3q5i_A          191 VDFGLSSFFSKDY---KLRDRLGTAYYIAP  217 (504)
T ss_dssp             CCCTTCEECCTTS---CBCCCCSCTTTCCH
T ss_pred             EECCCCEEcCCCC---ccccccCCcCCCCH
Confidence            9999998775432   12335689999998

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.84  E-value=4e-21  Score=196.01  Aligned_cols=137  Identities=34%  Similarity=0.459  Sum_probs=108.4

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------c------CccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------C------SNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------~------~~~~~~~lv~ey  433 (527)
                      ..|+..+.||+|+||+||+|+...+..||+|++...                         +      ..+...++||||
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~  119 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY  119 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEEC
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeec
Confidence            458999999999999999999877777999986321                         1      112236799999


Q ss_pred             ccCCcHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLY--SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ++++.+.....  .....+++..+..++.|+++||+|||   +++|+||||||+||+++ .++.+||+|||+|+......
T Consensus       120 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~  196 (394)
T 4e7w_A          120 VPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGE  196 (394)
T ss_dssp             CSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred             cCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCC
Confidence            99754443322  23456888889999999999999999   99999999999999999 79999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .   .....+|.+|+||
T Consensus       197 ~---~~~~~~t~~y~aP  210 (394)
T 4e7w_A          197 P---NVSYICSRYYRAP  210 (394)
T ss_dssp             C---CCSSCSCGGGCCH
T ss_pred             C---CcccccCcCccCH
Confidence            2   2235678999998

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.84  E-value=5.2e-21  Score=185.89  Aligned_cols=136  Identities=29%  Similarity=0.435  Sum_probs=110.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------------~~~~~~~~  428 (527)
                      ++|++.+.||+|+||.||+|+.. +++.||+|++...                                   +...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45899999999999999999875 6899999987531                                   12234568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIAK  504 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a~  504 (527)
                      +||||+++++|.+++... ..+++.++..++.+++.||+|||   +++|+||||||+||+++.++    .+|++|||+++
T Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK-ESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEeecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            999999999999999754 35789999999999999999999   99999999999999998776    89999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....+|+.|+||
T Consensus       161 ~~~~~~~---~~~~~~~~~y~aP  180 (283)
T 3bhy_A          161 KIEAGNE---FKNIFGTPEFVAP  180 (283)
T ss_dssp             ECC-----------CCCGGGCCH
T ss_pred             eccCCCc---ccccCCCcCccCc
Confidence            7643221   2234578899998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.84  E-value=5.9e-22  Score=210.77  Aligned_cols=127  Identities=20%  Similarity=0.179  Sum_probs=93.4

Q ss_pred             eeccCCceEEEEEEc-cCCcEEEEEEEee----------------------------------------ccCccceeEEE
Q 035895          392 LIGRGSFGSVYKARL-QDGMEFAIKVFHF----------------------------------------SCSNEDFRALV  430 (527)
Q Consensus       392 ~lg~G~~g~vy~~~~-~~~~~vavK~~~~----------------------------------------~~~~~~~~~lv  430 (527)
                      ..+.|++|.+..++. -.|+.||+|++..                                        +..+++..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            456677776666553 3588999999742                                        12245678999


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||+||+|.++|...+ .++..   +|+.||+.||+|+|   +++||||||||+|||++++|++||+|||+|+......
T Consensus       321 MEyv~G~~L~d~i~~~~-~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~  393 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGE-EIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC  393 (569)
T ss_dssp             EECCCSEEHHHHHHTTC-CCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred             EecCCCCcHHHHHHhCC-CCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence            99999999999997654 45543   48899999999999   9999999999999999999999999999999775432


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ..+..+||++||||
T Consensus       394 ~--~~~t~vGTp~YmAP  408 (569)
T 4azs_A          394 S--WPTNLVQSFFVFVN  408 (569)
T ss_dssp             C--CSHHHHHHHHHHHH
T ss_pred             c--cccCceechhhccH
Confidence            2  22346799999998

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.84  E-value=2.3e-21  Score=203.33  Aligned_cols=136  Identities=29%  Similarity=0.479  Sum_probs=114.0

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|+.. +++.||||++...                                +...+..++||
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            45899999999999999999865 7899999997421                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~  508 (527)
                      |||++|+|.+++... ..+++..+..++.|++.||+|||   +++|+||||||+||++   +.++.+||+|||+|+.+..
T Consensus       106 e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          106 EVYTGGELFDEIISR-KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             CCCCSCBHHHHHHTC-SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             ecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            999999999998754 45788899999999999999999   8999999999999999   4678999999999987754


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....||++|+||
T Consensus       182 ~~~---~~~~~gt~~y~aP  197 (484)
T 3nyv_A          182 SKK---MKDKIGTAYYIAP  197 (484)
T ss_dssp             CCS---HHHHTTGGGTCCH
T ss_pred             ccc---cccCCCCccccCc
Confidence            321   2235689999998

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.84  E-value=1.8e-21  Score=196.16  Aligned_cols=136  Identities=27%  Similarity=0.429  Sum_probs=112.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++...                              +..++..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            356999999999999999999875 7899999997531                              123456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+++|+|.+++...+ .+++.....++.+++.|++|||   +. +|+||||||+||+++.++.+||+|||+++.....  
T Consensus       112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--  185 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--  185 (360)
T ss_dssp             CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred             CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence            999999999997643 5788889999999999999999   74 8999999999999999999999999999765321  


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......||++|+||
T Consensus       186 --~~~~~~gt~~y~aP  199 (360)
T 3eqc_A          186 --MANSFVGTRSYMSP  199 (360)
T ss_dssp             --C----CCCCTTCCH
T ss_pred             --cccCCCCCCCeECH
Confidence              12234678899998

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=7.2e-23  Score=220.25  Aligned_cols=322  Identities=11%  Similarity=0.067  Sum_probs=173.4

Q ss_pred             hhcchhccc-CCCceeecCchhhhcC--CCCCEEEcccccc-cc-ccc------cccceEEcccccccCCCCCCcccccC
Q 035895           19 VCYRICTID-SQNKLVGIVSITIFNL--STLKVFDVDNNYV-LG-RLS------SIVDELSLSDNYLTSSTPELSFLSSM   87 (527)
Q Consensus        19 ~~~~~~~~~-s~N~l~~~~~~~~~~l--~~L~~L~Ls~N~~-~~-~~~------~~l~~L~Ls~N~l~~~~~~~~~~~~~   87 (527)
                      .|..+..++ ++|.+++..+..+..+  .+|++|+|++|.- .. .++      +.+++|+|++|.++.....+ +...+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHH
Confidence            355566666 5566555555555443  3366666666541 10 010      24667777777665432110 00112


Q ss_pred             CCCCCCCEEEcccCCCCc----ccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccc----------
Q 035895           88 SNCKYLKKLDISRNPLDG----FLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLN----------  153 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------  153 (527)
                      ..+++|++|++++|.+++    .++..+..+ ++|+.|++++|.+.+ ++..+..+++|++|+++.....          
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            456677777777777752    223333343 367777777777664 4566666666776666542211          


Q ss_pred             ----------------ccCcccccCCCCCCEEeccCcccccccC-hhhhcCcccCeeeeecccCCCCCCccccCCccCce
Q 035895          154 ----------------GSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN  216 (527)
Q Consensus       154 ----------------~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  216 (527)
                                      +.++..+..+++|+.|++++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|++
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence                            1123333444455555555555432221 22344555555555522111122222344566666


Q ss_pred             eeCC-----------CCCCCC--CchhhhCCCCccEEEccCCcccccCCccccC-CCCCCEEEcc----CCCCCCC----
Q 035895          217 LHLD-----------SNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIGN-LKVLTRIDFS----RNNLLGD----  274 (527)
Q Consensus       217 L~L~-----------~N~l~~--lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~----  274 (527)
                      |+++           .|.++.  ++.....+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            6666           244443  2333344666777777666666554445544 6777777775    5566653    


Q ss_pred             -ChhhhhcCCCCCEEEcccc--cceeecCCCC-CCCCCCCEEeCCCCccccc-CccchhhhccCCeeEeeeeee
Q 035895          275 -IPTTIQGLKSLQFLSLGHN--RLQGSIPNSF-DDLVSLESLDLSNNNLSEI-IPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       275 -~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~~~~~~~  343 (527)
                       ++..+.++++|++|++++|  .+++..+..+ ..+++|+.|++++|.+++. ++..+..++.|+.|+++.+.+
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence             3344666777777777643  2443333222 2367788888888887763 344556777888888887764

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.84  E-value=1.3e-21  Score=191.97  Aligned_cols=139  Identities=26%  Similarity=0.350  Sum_probs=112.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey  433 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||+|++...                             +..++..++||||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            456999999999999999999975 5899999987421                             2234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +++|+|.+++......+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......  .
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~  172 (302)
T 2j7t_A           98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL--Q  172 (302)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--H
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc--c
Confidence            9999999998776667899999999999999999999   8999999999999999999999999999986432111  1


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+|..|+||
T Consensus       173 ~~~~~~~~~~y~aP  186 (302)
T 2j7t_A          173 KRDSFIGTPYWMAP  186 (302)
T ss_dssp             C-----CCGGGCCH
T ss_pred             ccccccCChhhcCC
Confidence            11234578889998

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.84  E-value=3.7e-21  Score=190.20  Aligned_cols=141  Identities=25%  Similarity=0.296  Sum_probs=111.5

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cC----ccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CS----NEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~----~~~~~~l  429 (527)
                      .+.|++.+.||+|+||.||+|+. .+++.||||++...                             +.    .....++
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            45699999999999999999986 67899999987421                             11    2235679


Q ss_pred             EEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          430 VLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||||+++|+|.+++..   .+..+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++..
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence            9999999999999875   3456889999999999999999999   899999999999999999999999999998865


Q ss_pred             CCCCCcc-------ceeccccccccccC
Q 035895          507 TGEDQSM-------TQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~-------~~~~~~~t~~y~aP  527 (527)
                      .......       ......+|+.|+||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aP  212 (317)
T 2buj_A          185 CIHVEGSRQALTLQDWAAQRCTISYRAP  212 (317)
T ss_dssp             CEEEESHHHHHHHHHHHHHHSCGGGCCG
T ss_pred             ccccccccccccccccccccCCcccCCH
Confidence            3211100       01123468889998

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.84  E-value=1.2e-20  Score=184.01  Aligned_cols=133  Identities=27%  Similarity=0.357  Sum_probs=110.1

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRALV  430 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~lv  430 (527)
                      |++.+.||+|+||.||+|.. .++..||+|++...                                   .......++|
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            78888999999999999986 56889999987421                                   0113456899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~  507 (527)
                      |||+++|+|.+++... ..+++.....++.+++.||+|||   +.+  |+||||||+||+++ +++.+||+|||+++...
T Consensus       108 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~  183 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             EECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccc
Confidence            9999999999999764 35788889999999999999999   877  99999999999998 78999999999997654


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...    .....+|+.|+||
T Consensus       184 ~~~----~~~~~~t~~y~aP  199 (290)
T 1t4h_A          184 ASF----AKAVIGTPEFMAP  199 (290)
T ss_dssp             TTS----BEESCSSCCCCCG
T ss_pred             ccc----cccccCCcCcCCH
Confidence            321    2234688999998

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.84  E-value=9.4e-21  Score=185.49  Aligned_cols=137  Identities=27%  Similarity=0.438  Sum_probs=115.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec---------------------------------------cCc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS---------------------------------------CSN  423 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~---------------------------------------~~~  423 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                                       +..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            577999999999999999999874 6899999997421                                       112


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ++..++||||+++|+|.+++... ..+++.....++.+++.||+|||   +++|+||||||+||+++.++.+||+|||++
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  171 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFS  171 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccch
Confidence            34568999999999999999754 45788899999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCccceeccccccccccC
Q 035895          504 KLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.......   .....++..|+||
T Consensus       172 ~~~~~~~~---~~~~~~~~~y~aP  192 (298)
T 1phk_A          172 CQLDPGEK---LREVCGTPSYLAP  192 (298)
T ss_dssp             EECCTTCC---BCCCCSCGGGCCH
T ss_pred             hhcCCCcc---cccccCCccccCH
Confidence            87653321   2234578899998

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.84  E-value=2.4e-21  Score=209.77  Aligned_cols=142  Identities=25%  Similarity=0.396  Sum_probs=113.0

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc----CCcEEEEEEEeec-----------------------------cCccceeE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ----DGMEFAIKVFHFS-----------------------------CSNEDFRA  428 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~----~~~~vavK~~~~~-----------------------------~~~~~~~~  428 (527)
                      ...+.|++.+.||+|+||.||+|+..    .+..||||++...                             +..++..+
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~  466 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVW  466 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceE
Confidence            34467899999999999999999863    3567999986421                             11234568


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++...+..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+....
T Consensus       467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~  543 (656)
T 2j0j_A          467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  543 (656)
T ss_dssp             EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred             EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence            999999999999999876667899999999999999999999   89999999999999999999999999999987753


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ... .......+|+.||||
T Consensus       544 ~~~-~~~~~~~~t~~y~aP  561 (656)
T 2j0j_A          544 STY-YKASKGKLPIKWMAP  561 (656)
T ss_dssp             -----------CCGGGCCH
T ss_pred             Ccc-eeccCCCCCcceeCH
Confidence            322 222334567889998

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.84  E-value=5.2e-21  Score=189.83  Aligned_cols=140  Identities=29%  Similarity=0.443  Sum_probs=114.9

Q ss_pred             hhhcCCccccceeccCCceEEEEEEc--cCCcEEEEEEEeec----------------------------------cC--
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARL--QDGMEFAIKVFHFS----------------------------------CS--  422 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~--~~~~~vavK~~~~~----------------------------------~~--  422 (527)
                      ....++|++.+.||+|+||.||+|+.  .+++.||+|++...                                  +.  
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            34567899999999999999999986  46889999987421                                  00  


Q ss_pred             ---ccceeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 035895          423 ---NEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLS  498 (527)
Q Consensus       423 ---~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~  498 (527)
                         .....++||||++ |+|.+++.... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~  162 (326)
T 1blx_A           87 RTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLA  162 (326)
T ss_dssp             ECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             ccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEe
Confidence               2345679999998 69999987643 34789899999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++......   ......+|..|+||
T Consensus       163 Dfg~~~~~~~~~---~~~~~~~~~~y~aP  188 (326)
T 1blx_A          163 DFGLARIYSFQM---ALTSVVVTLWYRAP  188 (326)
T ss_dssp             SCCSCCCCCGGG---GGCCCCCCCTTCCH
T ss_pred             cCcccccccCCC---CccccccccceeCH
Confidence            999998764321   22335678899998

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.84  E-value=9.9e-21  Score=185.99  Aligned_cols=140  Identities=25%  Similarity=0.361  Sum_probs=112.2

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------c--Ccccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------C--SNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------~--~~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...                                 +  ...+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            47899999999999999999996 46899999997421                                 1  223466


Q ss_pred             EEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ++||||+++| |.+++... +..+++.....++.|++.||+|||   +++|+||||||+||+++.++.+|++|||+++..
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~  159 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL  159 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence            8999999987 76766543 356889899999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .............+|..|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aP  180 (305)
T 2wtk_C          160 HPFAADDTCRTSQGSPAFQPP  180 (305)
T ss_dssp             CTTCSSCEECCCCSCGGGCCH
T ss_pred             CccccccccccCCCCCCCcCh
Confidence            533222222344588899998

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.84  E-value=5.1e-21  Score=188.64  Aligned_cols=140  Identities=26%  Similarity=0.479  Sum_probs=104.3

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRAL  429 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~l  429 (527)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++..                                .+..++..++
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            346799999999999999999985 5789999998752                                1123456789


Q ss_pred             EEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          430 VLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||||+++|+|.+++..   .+..+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~  186 (310)
T 2wqm_A          110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF  186 (310)
T ss_dssp             EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred             EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence            9999999999999864   2455788899999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....  ......++..|+||
T Consensus       187 ~~~~~--~~~~~~~~~~y~aP  205 (310)
T 2wqm_A          187 SSKTT--AAHSLVGTPYYMSP  205 (310)
T ss_dssp             --------------CCSSCCH
T ss_pred             cCCCc--cccccCCCeeEeCh
Confidence            43221  12234578889998

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.5e-20  Score=189.56  Aligned_cols=133  Identities=24%  Similarity=0.261  Sum_probs=82.5

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhc-CCcCCcEEEeecCcccccCcccccCCCCCCEEecc
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIG-NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR  172 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  172 (527)
                      +.+++++|.++. +|..+   ...++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            345555555554 23322   22455566666666555555555 66666666666666666666666666666666666


Q ss_pred             CcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchh
Q 035895          173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI  230 (527)
Q Consensus       173 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~  230 (527)
                      +|+|+...+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+.+|..
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            6666655555666666777777777777666666677777777777777777666653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.84  E-value=4.7e-21  Score=190.44  Aligned_cols=137  Identities=32%  Similarity=0.519  Sum_probs=109.3

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcE--EEEEEEeec-------------------------------cCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGME--FAIKVFHFS-------------------------------CSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~--vavK~~~~~-------------------------------~~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||.||+|+.. ++..  ||+|.+...                               +..++..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            56899999999999999999864 5654  499987531                               1223466899


Q ss_pred             EEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          431 LEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                      |||+++|+|.+++...+               ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~  181 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  181 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence            99999999999997543               35789999999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|||+++.....   .......+++.|+||
T Consensus       182 kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aP  210 (327)
T 1fvr_A          182 KIADFGLSRGQEVY---VKKTMGRLPVRWMAI  210 (327)
T ss_dssp             EECCTTCEESSCEE---CCC----CCTTTCCH
T ss_pred             EEcccCcCcccccc---ccccCCCCCccccCh
Confidence            99999999854321   112223457789988

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=9.6e-21  Score=184.93  Aligned_cols=189  Identities=24%  Similarity=0.359  Sum_probs=108.8

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccC
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRG  173 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  173 (527)
                      ..+.+..+.+++..+.  ..+ ++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|+.|++++
T Consensus        27 ~~~~l~~~~~~~~~~~--~~l-~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVTQ--NEL-NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHTTCSCTTSEECH--HHH-HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHhcCCCcccccch--hhc-CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            3344555555543222  222 2566666666666543 2 35556666666666666665433  55666666666666


Q ss_pred             cccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCc
Q 035895          174 NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS  253 (527)
Q Consensus       174 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~  253 (527)
                      |.+++ +| .+..+++|+.|++++|++++.  ..+..+++|+.|++++|+++.+                         .
T Consensus       100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------------------------~  150 (291)
T 1h6t_A          100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------------------------T  150 (291)
T ss_dssp             SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-------------------------G
T ss_pred             CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-------------------------h
Confidence            66653 22 255555566666666655542  2355555555555555555544                         3


Q ss_pred             cccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          254 KIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       254 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                      .+..+++|++|++++|++.+..|  +..+++|++|++++|++++. | .+..+++|+.|++++|+++..
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            35556667777777777665433  66677777777777777643 3 366677777777777776653

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.84  E-value=5.4e-21  Score=194.99  Aligned_cols=134  Identities=27%  Similarity=0.320  Sum_probs=108.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------------cC----c
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------------CS----N  423 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------------~~----~  423 (527)
                      +.|++.+.||+|+||+||+|+. .+++.||||++...                                    +.    .
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~  116 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVN  116 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCC
Confidence            6799999999999999999985 56899999997421                                    00    2


Q ss_pred             cceeEEEEEeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCC--------
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNI--------  493 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~--------  493 (527)
                      ....++||||+ +|++.+.+... ...+++..+..++.|++.||+|||   ++ +|+||||||+|||++.++        
T Consensus       117 ~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~~~  192 (397)
T 1wak_A          117 GTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRLAA  192 (397)
T ss_dssp             EEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHHHH
T ss_pred             CceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhhhh
Confidence            34568999999 55666655543 356889999999999999999999   87 999999999999999775        


Q ss_pred             -----------------------------------------cEEEeecccccccCCCCCccceeccccccccccC
Q 035895          494 -----------------------------------------VAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       494 -----------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                                                               .+||+|||+|+.....     .+...||.+||||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aP  262 (397)
T 1wak_A          193 EATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSL  262 (397)
T ss_dssp             HHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCH
T ss_pred             hhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCC
Confidence                                                     7999999999876432     2234688999998

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.84  E-value=4.9e-21  Score=187.64  Aligned_cols=138  Identities=29%  Similarity=0.457  Sum_probs=112.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||||++...                               +..++..++||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   81 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence            468999999999999999999865 7899999987421                               12345678999


Q ss_pred             EeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||++ |+|.+++.... ..+++.....++.+++.||+|||   +.+|+||||||+||+++.++.+|++|||+++......
T Consensus        82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~  157 (299)
T 2r3i_A           82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  157 (299)
T ss_dssp             ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred             Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence            9998 59999987643 45788889999999999999999   8999999999999999999999999999998764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  ......+|.+|+||
T Consensus       158 ~--~~~~~~~~~~y~aP  172 (299)
T 2r3i_A          158 R--TYTHEVVTLWYRAP  172 (299)
T ss_dssp             B--CTTSCBCCCTTCCH
T ss_pred             c--ccCcccccccccCc
Confidence            1  12234578889998

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.84  E-value=9.4e-21  Score=191.23  Aligned_cols=139  Identities=25%  Similarity=0.330  Sum_probs=113.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cC-----ccce
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CS-----NEDF  426 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~-----~~~~  426 (527)
                      ..+.|++.+.||+|+||.||+|+. .+++.||||++...                              +.     ....
T Consensus        25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            346799999999999999999985 46889999997421                              00     1135


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||++ |+|.+++...  .+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++..
T Consensus       105 ~~iv~e~~~-~~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  178 (364)
T 3qyz_A          105 VYIVQDLME-TDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA  178 (364)
T ss_dssp             EEEEEECCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEcccC-cCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence            689999998 4999998653  4788899999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCc-cceeccccccccccC
Q 035895          507 TGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      ...... ...+...||++|+||
T Consensus       179 ~~~~~~~~~~~~~~gt~~y~aP  200 (364)
T 3qyz_A          179 DPDHDHTGFLTEYVATRWYRAP  200 (364)
T ss_dssp             CGGGCBCCTTCCCCSCGGGCCH
T ss_pred             CCCCCccccccccccccCCCCC
Confidence            532211 112345689999998

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.84  E-value=4e-21  Score=192.57  Aligned_cols=136  Identities=26%  Similarity=0.403  Sum_probs=114.8

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------------------  420 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------------------  420 (527)
                      .++|++.+.||+|+||.||+|+. +++.||||++...                                           
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            56899999999999999999999 8999999987421                                           


Q ss_pred             ---cCccceeEEEEEeccCCcHHHH------HHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeee
Q 035895          421 ---CSNEDFRALVLEYTTNGSLEKV------LYSS-NYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLL  489 (527)
Q Consensus       421 ---~~~~~~~~lv~ey~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill  489 (527)
                         +..++..++||||+++|+|.++      +... ...+++..+..++.|++.||+|||   + ++|+||||||+||++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~  185 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM  185 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence               1123466899999999999988      5432 456889999999999999999999   7 999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.++.+||+|||.++.....    ......+|..|+||
T Consensus       186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aP  219 (348)
T 2pml_X          186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPP  219 (348)
T ss_dssp             CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCG
T ss_pred             cCCCcEEEeccccccccccc----cccCCCCCcCccCc
Confidence            99999999999999876432    22345678899998

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.84  E-value=1.7e-21  Score=188.84  Aligned_cols=136  Identities=29%  Similarity=0.417  Sum_probs=106.0

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEEec
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~  434 (527)
                      ..++|++.+.||+|+||.||+|+.. |+.||||++...                            ....+..++||||+
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   97 (278)
T 1byg_A           19 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   97 (278)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             ChhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence            3567999999999999999999875 789999987421                            12234678999999


Q ss_pred             cCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++...+. .+++.....++.+++.|++|||   +++|+||||||+||+++.++.+||+|||+++......   
T Consensus        98 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~---  171 (278)
T 1byg_A           98 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---  171 (278)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             CCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc---
Confidence            99999999975432 3788889999999999999999   8999999999999999999999999999998654321   


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....+++.|+||
T Consensus       172 --~~~~~~~~y~aP  183 (278)
T 1byg_A          172 --DTGKLPVKWTAP  183 (278)
T ss_dssp             ------CCTTTSCH
T ss_pred             --cCCCccccccCH
Confidence              123467789988

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.83  E-value=1.2e-20  Score=189.46  Aligned_cols=135  Identities=23%  Similarity=0.356  Sum_probs=109.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CC-cEEEEEEEeec----------------------------------cCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DG-MEFAIKVFHFS----------------------------------CSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~-~~vavK~~~~~----------------------------------~~~~~~~  427 (527)
                      .+.|++.+.||+|+||.||+|+.. ++ +.||+|+++..                                  +...+..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            367999999999999999999864 44 78999997421                                  1123466


Q ss_pred             EEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee-----------------
Q 035895          428 ALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL-----------------  489 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill-----------------  489 (527)
                      ++||||+ +|++.+.+.... ..+++.++..++.|++.||+|||   +++|+||||||+||++                 
T Consensus        98 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~  173 (355)
T 2eu9_A           98 CIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEE  173 (355)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCE
T ss_pred             EEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccccc
Confidence            8999999 567767665543 46889999999999999999999   9999999999999999                 


Q ss_pred             --CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 --DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 --~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                        +.++.+||+|||+++......     ....||+.|+||
T Consensus       174 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aP  208 (355)
T 2eu9_A          174 KSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPP  208 (355)
T ss_dssp             EEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCH
T ss_pred             cccCCCcEEEeecCccccccccc-----cCCcCCCcccCC
Confidence              567899999999998754321     234688999998

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.83  E-value=1e-20  Score=187.40  Aligned_cols=137  Identities=26%  Similarity=0.309  Sum_probs=113.7

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-------------------------------------Ccc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-------------------------------------SNE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-------------------------------------~~~  424 (527)
                      ..+.|++.+.||+|+||.||+|+. .+++.||||++....                                     ..+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            356799999999999999999985 578999999975321                                     123


Q ss_pred             ceeEEEEEeccC-CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeeccc
Q 035895          425 DFRALVLEYTTN-GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGI  502 (527)
Q Consensus       425 ~~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Dfg~  502 (527)
                      +..++||||+.+ ++|.+++... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++ +++.+||+|||+
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~  196 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGS  196 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CcEEEEEEcCCCCccHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence            456799999986 8999998754 35788889999999999999999   99999999999999999 789999999999


Q ss_pred             ccccCCCCCccceeccccccccccC
Q 035895          503 AKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       503 a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++......    .....+|+.|+||
T Consensus       197 ~~~~~~~~----~~~~~gt~~y~aP  217 (320)
T 3a99_A          197 GALLKDTV----YTDFDGTRVYSPP  217 (320)
T ss_dssp             CEECCSSC----BCCCCSCGGGSCH
T ss_pred             cccccccc----ccCCCCCccCCCh
Confidence            98775322    2234588999998

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.83  E-value=2.2e-21  Score=188.09  Aligned_cols=139  Identities=29%  Similarity=0.467  Sum_probs=112.2

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------c--CccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------C--SNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~--~~~~~~~l  429 (527)
                      .++|++.+.||+|+||.||+|+.. +++.||+|++...                               +  ......++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            567999999999999999999864 7899999997521                               1  12346789


Q ss_pred             EEEeccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEecCCCCCCeeeCCCCcEEEeecc
Q 035895          430 VLEYTTNGSLEKVLYSS---NYILDILQRLNIMIDVTSALEYLHFGYSTP-----IIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~-----iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      ||||+++|+|.+++...   ...+++.....++.|++.||+|||   +.+     |+||||||+||+++.++.+||+|||
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg  161 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG  161 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence            99999999999998753   234889999999999999999999   777     9999999999999999999999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.......  ......+|..|+||
T Consensus       162 ~~~~~~~~~~--~~~~~~~~~~y~aP  185 (279)
T 2w5a_A          162 LARILNHDTS--FAKTFVGTPYYMSP  185 (279)
T ss_dssp             HHHHC---CH--HHHHHHSCCTTCCH
T ss_pred             hheeeccccc--cccccCCCccccCh
Confidence            9987643221  11234578889998

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.83  E-value=4e-21  Score=190.07  Aligned_cols=144  Identities=26%  Similarity=0.418  Sum_probs=111.2

Q ss_pred             HHHhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCccce
Q 035895          378 QELLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNEDF  426 (527)
Q Consensus       378 ~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~~~  426 (527)
                      ++.....++|++.+.||+|+||.||+|+...  .||+|++...                               +..++.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            3444556789999999999999999998754  5999987531                               122345


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++||||+++|+|.+++...+..+++.++..++.+++.||+|||   +++|+||||||+||+++ ++.+|++|||+++..
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             eEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            68999999999999999776666888899999999999999999   89999999999999998 679999999998765


Q ss_pred             CCCCC---ccceeccccccccccC
Q 035895          507 TGEDQ---SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~---~~~~~~~~~t~~y~aP  527 (527)
                      .....   ........||+.|+||
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~y~aP  203 (319)
T 2y4i_B          180 GVLQAGRREDKLRIQNGWLCHLAP  203 (319)
T ss_dssp             --------CCSCBCCSGGGGTSCH
T ss_pred             ccccccccccccccCCCcccccCh
Confidence            32111   1112234578899998

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.83  E-value=6.6e-21  Score=187.32  Aligned_cols=135  Identities=27%  Similarity=0.470  Sum_probs=112.6

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|++...                             +...+..++||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence            46899999999999999999864 7899999997531                             22345668999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL---DDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill---~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.+++...+ .+++.....++.|++.||+|||   +.+|+||||||+||++   ++++.+|++|||+++.....  
T Consensus        89 ~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--  162 (304)
T 2jam_A           89 SGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG--  162 (304)
T ss_dssp             CSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB--
T ss_pred             CCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC--
Confidence            9999999986543 5788889999999999999999   8999999999999999   78899999999999865322  


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......+|++|+||
T Consensus       163 --~~~~~~~~~~y~aP  176 (304)
T 2jam_A          163 --IMSTACGTPGYVAP  176 (304)
T ss_dssp             --TTHHHHSCCCBCCT
T ss_pred             --ccccccCCCCccCh
Confidence              11234578899998

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=183.93  Aligned_cols=138  Identities=29%  Similarity=0.410  Sum_probs=110.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|....+||+|+||.||+|+. .+++.||||++...                             +...+..++||||+
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            4455667999999999999985 56889999987531                             22345668999999


Q ss_pred             cCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCCC
Q 035895          435 TNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       435 ~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      ++|+|.+++.....  ..++.....++.|++.||+|||   +.+|+||||||+||+++. ++.+||+|||+++.......
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~  178 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP  178 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence            99999999976532  3567778889999999999999   899999999999999987 89999999999987643221


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                        ......+|..|+||
T Consensus       179 --~~~~~~~~~~y~aP  192 (295)
T 2clq_A          179 --CTETFTGTLQYMAP  192 (295)
T ss_dssp             ----CCCCCCGGGCCH
T ss_pred             --cccccCCCccccCh
Confidence              12234578899998

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.83  E-value=5.8e-21  Score=186.50  Aligned_cols=141  Identities=25%  Similarity=0.380  Sum_probs=111.1

Q ss_pred             hcCCccccc-eeccCCceEEEEEEc---cCCcEEEEEEEeecc------------------------------CccceeE
Q 035895          383 ATDGFSANN-LIGRGSFGSVYKARL---QDGMEFAIKVFHFSC------------------------------SNEDFRA  428 (527)
Q Consensus       383 ~~~~~~~~~-~lg~G~~g~vy~~~~---~~~~~vavK~~~~~~------------------------------~~~~~~~  428 (527)
                      ..+.|++.+ .||+|+||.||+|..   .+++.||||++....                              ...+..+
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   93 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWM   93 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEE
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcE
Confidence            345688877 999999999999954   346889999975311                              1234567


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++... ..+++.+...++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++....
T Consensus        94 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  169 (291)
T ss_dssp             EEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence            999999999999999764 35788899999999999999999   89999999999999999999999999999987754


Q ss_pred             CCCcc-ceeccccccccccC
Q 035895          509 EDQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~-~~~~~~~t~~y~aP  527 (527)
                      ..... ......+++.|+||
T Consensus       170 ~~~~~~~~~~~~~~~~y~aP  189 (291)
T 1xbb_A          170 DENYYKAQTHGKWPVKWYAP  189 (291)
T ss_dssp             TCSEEEC----CCCGGGCCH
T ss_pred             CCCcccccccCCCCceeeCh
Confidence            32211 11223456889998

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.83  E-value=4.6e-21  Score=187.00  Aligned_cols=141  Identities=24%  Similarity=0.331  Sum_probs=105.3

Q ss_pred             cCCccccceeccCCceEEEEEEcc--CC--cEEEEEEEeecc-------------------------------CccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ--DG--MEFAIKVFHFSC-------------------------------SNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~--~~--~~vavK~~~~~~-------------------------------~~~~~~~  428 (527)
                      .++|++.+.||+|+||.||+|++.  ++  ..||||+++...                               ...+..+
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   96 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK   96 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCce
Confidence            356999999999999999999853  33  368999874210                               1122357


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +||||+++|+|.+++......+++.....++.+++.||+|||   +++|+||||||+||+++.++.+|++|||+++....
T Consensus        97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccccc
Confidence            999999999999999876566889999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCCcc-ceeccccccccccC
Q 035895          509 EDQSM-TQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~-~~~~~~~t~~y~aP  527 (527)
                      ..... ......+|..|+||
T Consensus       174 ~~~~~~~~~~~~~~~~y~aP  193 (291)
T 1u46_A          174 NDDHYVMQEHRKVPFAWCAP  193 (291)
T ss_dssp             -CCEEEC-----CCGGGCCH
T ss_pred             cccchhhhccCCCCceeeCc
Confidence            32211 12234467789998

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.83  E-value=1.2e-20  Score=189.34  Aligned_cols=138  Identities=26%  Similarity=0.377  Sum_probs=111.1

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec------------------------------cC-----cccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS------------------------------CS-----NEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~------------------------------~~-----~~~~~  427 (527)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++...                              +.     .....
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            467999999999999999999864 6899999997421                              01     12457


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||+. |+|.+++..  ..+++..+..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++...
T Consensus        90 ~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             EEEECCCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEeccC-ccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            89999998 599998875  35788899999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCCcc--------ceeccccccccccC
Q 035895          508 GEDQSM--------TQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~--------~~~~~~~t~~y~aP  527 (527)
                      ......        ......||.+|+||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (353)
T 2b9h_A          164 ESAADNSEPTGQQSGMVEFVATRWYRAP  191 (353)
T ss_dssp             ----------------CCCCCCGGGCCH
T ss_pred             cccccccCccccccchhhccccccccCC
Confidence            321110        11234678999998

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=1.3e-20  Score=201.48  Aligned_cols=191  Identities=24%  Similarity=0.326  Sum_probs=111.8

Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      ..+..++++.+.+....+.  ..+ .+|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~~--~~L-~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ--NEL-NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH--HHH-TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccch--hcC-CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3455556666666655432  233 3577777777776643 2 46667777777777777765444  66677777777


Q ss_pred             ccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccccc
Q 035895          171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      |++|.+.+ +| .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|.+.+.
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence            77777663 22 566666677777777766642  3466666666677666666665 3445555555555555555544


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (527)
                      .|  +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++.+
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence            33  55555555555555555432 2 35555555555555555543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.83  E-value=1.4e-20  Score=189.39  Aligned_cols=144  Identities=25%  Similarity=0.388  Sum_probs=102.8

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cC-------
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CS-------  422 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~-------  422 (527)
                      ......++|++.+.||+|+||.||+|+. .+++.||||++...                            +.       
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred             hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence            3456678999999999999999999986 46899999987421                            00       


Q ss_pred             ccceeEEEEEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEe
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLS  498 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~  498 (527)
                      .....++||||+++ +|...+..   ....+++.....++.+++.|++|+| .++++|+||||||+||+++. ++.+||+
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH-~~~~~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           97 RDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             TCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT-STTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             cceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh-CCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence            01126799999987 55444332   3456788888999999999999999 45889999999999999996 8999999


Q ss_pred             ecccccccCCCCCccceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||+++.......   .....+|++|+||
T Consensus       175 Dfg~a~~~~~~~~---~~~~~gt~~y~aP  200 (360)
T 3e3p_A          175 DFGSAKKLSPSEP---NVAYICSRYYRAP  200 (360)
T ss_dssp             CCTTCBCCCTTSC---CCSTTSCGGGCCH
T ss_pred             eCCCceecCCCCC---cccccCCcceeCH
Confidence            9999987754322   2234678999998

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=1.7e-20  Score=189.13  Aligned_cols=156  Identities=25%  Similarity=0.226  Sum_probs=94.7

Q ss_pred             CCCEEEcccCCCCcccChhHh-hccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           92 YLKKLDISRNPLDGFLPRVVG-NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      .++.|+|++|+|++..+..+. .+ .+|+.|+|++|.|+++.+..|..+++|++|+|++|+|++..+..|..+++|+.|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            355666666666655444443 33 3566666666666665556666666666666666666665555666666666666


Q ss_pred             ccCcccccccChhhhcCcccCeeeeecccCCCCCCccc---cCCccCceeeCCCCCCCCCch-hhhCCCC--ccEEEccC
Q 035895          171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCF---GNLTALRNLHLDSNELTSIPS-ILWNLKD--ILYLDFWS  244 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~lp~-~~~~l~~--L~~l~l~~  244 (527)
                      |++|++++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|+|++|+|+.+|. .+..++.  ++.|++.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            66666665556666666666666666666665544444   456667777777777766653 3444444  35666666


Q ss_pred             Cccc
Q 035895          245 NLFV  248 (527)
Q Consensus       245 n~~~  248 (527)
                      |.+.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            6554

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.83  E-value=1.2e-20  Score=191.04  Aligned_cols=134  Identities=25%  Similarity=0.280  Sum_probs=102.0

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCcc------c
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNE------D  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~------~  425 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                               +...      .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            47899999999999999999985 46899999997531                               1111      2


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+++ +|.+.+..   .+++.+...++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+|+.
T Consensus       104 ~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             ceEEEEEcCCC-CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence            56899999985 78888753   4788888999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....   ..+...+|+.|+||
T Consensus       177 ~~~~~---~~~~~~gt~~y~aP  195 (371)
T 2xrw_A          177 AGTSF---MMTPYVVTRYYRAP  195 (371)
T ss_dssp             ----------------CTTCCH
T ss_pred             ccccc---ccCCceecCCccCH
Confidence            64321   12335688999998

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=186.39  Aligned_cols=141  Identities=26%  Similarity=0.311  Sum_probs=103.3

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------c--------Cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------C--------SN  423 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~--------~~  423 (527)
                      ....|++.+.||+|+||.||+|+. .+++.||||++...                              +        ..
T Consensus        26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            345689999999999999999996 57899999987321                              0        12


Q ss_pred             cceeEEEEEeccCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeCCCCcEEEee
Q 035895          424 EDFRALVLEYTTNGSLEKVLYS--SNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLDDNIVAHLSD  499 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~~~~~~kl~D  499 (527)
                      ....++||||+. |+|.+++..  ....+++.++..++.|++.||+|||   +.+  |+||||||+||+++.++.+||+|
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~D  181 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCD  181 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEec
Confidence            234689999996 699998865  3446899999999999999999999   888  99999999999999999999999


Q ss_pred             cccccccCCCCCcc----------ceeccccccccccC
Q 035895          500 FGIAKLLTGEDQSM----------TQTQTLAIIGYMAP  527 (527)
Q Consensus       500 fg~a~~~~~~~~~~----------~~~~~~~t~~y~aP  527 (527)
                      ||+++.........          ......+|+.|+||
T Consensus       182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aP  219 (337)
T 3ll6_A          182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTP  219 (337)
T ss_dssp             CTTCBCCSSCC---------------------------
T ss_pred             CccceeccccCcccccccccccchhhccccCCCCcCCh
Confidence            99998765322110          11134578899998

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.83  E-value=4.9e-21  Score=206.59  Aligned_cols=133  Identities=26%  Similarity=0.400  Sum_probs=103.9

Q ss_pred             ceeccCCceEEEEEEc---cCCcEEEEEEEeecc------------------------------CccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARL---QDGMEFAIKVFHFSC------------------------------SNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~---~~~~~vavK~~~~~~------------------------------~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||.||+|.+   ..++.||||+++...                              ...+..++|||||++|
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g  454 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  454 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence            5799999999999965   346789999985321                              1123457999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc-ccee
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS-MTQT  516 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~  516 (527)
                      +|.+++... ..+++.++..|+.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+.+...... ...+
T Consensus       455 ~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~  530 (635)
T 4fl3_A          455 PLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  530 (635)
T ss_dssp             EHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------
T ss_pred             CHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccccc
Confidence            999999754 45789999999999999999999   899999999999999999999999999999977543221 2223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...+|+.|+||
T Consensus       531 ~~~~t~~y~AP  541 (635)
T 4fl3_A          531 HGKWPVKWYAP  541 (635)
T ss_dssp             ----CGGGSCH
T ss_pred             CCCCceeeeCh
Confidence            34467889998

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.83  E-value=6.3e-21  Score=189.11  Aligned_cols=136  Identities=27%  Similarity=0.353  Sum_probs=110.3

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------------cCcccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------------CSNEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------------~~~~~~~  427 (527)
                      ++|++.+.||+|+||.||+|+. .+++.||||++...                                    +...+..
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   89 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY   89 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSE
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCce
Confidence            5699999999999999999986 46899999987421                                    0012336


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---cEEEeeccccc
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---VAHLSDFGIAK  504 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---~~kl~Dfg~a~  504 (527)
                      ++||||+++|+|.+++... ..+++.....++.|++.||+|||   +++|+||||||+||+++.++   .+||+|||+++
T Consensus        90 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           90 YIVLELMEGGELFDKVVGN-KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEEECCTTEETHHHHSTT-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             EEEEecCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            8999999999999988643 46788889999999999999999   99999999999999998655   49999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......   ......||+.|+||
T Consensus       166 ~~~~~~---~~~~~~gt~~y~aP  185 (322)
T 2ycf_A          166 ILGETS---LMRTLCGTPTYLAP  185 (322)
T ss_dssp             ECCCCH---HHHHHHSCCTTCCH
T ss_pred             eccccc---ccccccCCcCccCc
Confidence            764321   11234578899998

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.83  E-value=4.1e-21  Score=193.93  Aligned_cols=134  Identities=26%  Similarity=0.377  Sum_probs=94.9

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cC------cc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CS------NE  424 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~------~~  424 (527)
                      ..+.|++.+.||+|+||.||+|.. .+|+.||||++...                               +.      ..
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            347899999999999999999985 57899999997421                               00      11


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||+ +++|.+++..  ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+|+
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~  180 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR  180 (367)
T ss_dssp             CCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred             CeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence            3468999999 6899998864  45788899999999999999999   9999999999999999999999999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....     .+...+|.+|+||
T Consensus       181 ~~~~~-----~~~~~~t~~y~aP  198 (367)
T 2fst_X          181 HTADE-----MTGYVATRWYRAP  198 (367)
T ss_dssp             ---------------CCCTTCCH
T ss_pred             ccccc-----CCCcCcCcCccCh
Confidence            75432     2335688999998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=4.4e-20  Score=172.58  Aligned_cols=152  Identities=19%  Similarity=0.246  Sum_probs=99.0

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccCh-hHhhccccccEEEcccCccccccchhhcCCcCCcE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPR-VVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLIS  144 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  144 (527)
                      .+++++|.++.++..+        .+.+++|+|++|++++..|. .|..+. +|+.|+|++|.|++..+..|..+++|++
T Consensus        15 ~l~~s~n~l~~iP~~~--------~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI--------PQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             EEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             EeEeCCCCcccCccCC--------CCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            4555555555544332        13356777777777765442 344443 5777777777776666666777777777


Q ss_pred             EEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCC
Q 035895          145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNEL  224 (527)
Q Consensus       145 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  224 (527)
                      |+|++|++++..+..|..+++|+.|++++|++++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|++++|.+
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            77777777766666667777777777777777766666677777777777777777766666777777777777777766


Q ss_pred             CC
Q 035895          225 TS  226 (527)
Q Consensus       225 ~~  226 (527)
                      ..
T Consensus       166 ~c  167 (220)
T 2v70_A          166 NC  167 (220)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.83  E-value=5.5e-21  Score=197.11  Aligned_cols=140  Identities=27%  Similarity=0.438  Sum_probs=105.4

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccC
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTN  436 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~  436 (527)
                      ..+|+..++||+|+||+||.....+++.||||++...                           +...+..++|||||+ 
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-  101 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-  101 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-
Confidence            3458889999999999977666678899999987421                           123456789999997 


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-----CCcEEEeecccccccCCCCC
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-----NIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+|.+++..........++..++.||+.||+|||   +++|+||||||+||+++.     ...+||+|||+|+.......
T Consensus       102 g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~  178 (432)
T 3p23_A          102 ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH  178 (432)
T ss_dssp             EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-----
T ss_pred             CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCc
Confidence            5999999866544444456789999999999999   899999999999999942     34688999999987753322


Q ss_pred             c-cceeccccccccccC
Q 035895          512 S-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~-~~~~~~~~t~~y~aP  527 (527)
                      . ...+...||++||||
T Consensus       179 ~~~~~~~~~gt~~y~AP  195 (432)
T 3p23_A          179 SFSRRSGVPGTEGWIAP  195 (432)
T ss_dssp             -------CCSCTTSCCG
T ss_pred             ceeeccccCCCcCccCh
Confidence            1 222345689999998

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.83  E-value=5.4e-21  Score=196.26  Aligned_cols=135  Identities=18%  Similarity=0.214  Sum_probs=104.8

Q ss_pred             hcCCccccceeccCCceEEEEEE-ccCCcEEEEEEEeeccC--------------------c------------------
Q 035895          383 ATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCS--------------------N------------------  423 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~-~~~~~~vavK~~~~~~~--------------------~------------------  423 (527)
                      ....|...++||+|+||+||+|+ ..+|+.||||++.....                    +                  
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            34457888999999999999999 46799999999862100                    0                  


Q ss_pred             ---------------------cceeEEEEEeccCCcHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 035895          424 ---------------------EDFRALVLEYTTNGSLEKVLYS------SNYILDILQRLNIMIDVTSALEYLHFGYSTP  476 (527)
Q Consensus       424 ---------------------~~~~~lv~ey~~~g~L~~~l~~------~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~  476 (527)
                                           ....+++|++ .+|+|.+++..      .+..+++..+..++.|++.||+|||   +++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~  231 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPR-MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYG  231 (413)
T ss_dssp             EEECCC---------------CCSEEEEEEC-CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             hcccCCCCccccccCCCccccccceEEEeeh-hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence                                 0012455555 46899998842      2344677788899999999999999   999


Q ss_pred             eEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       477 iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||||||||+|||++.++.+||+|||+++.....     ....+| ++||||
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aP  276 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPP  276 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCH
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCc
Confidence            999999999999999999999999999875422     223456 889998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=7.9e-21  Score=207.43  Aligned_cols=130  Identities=25%  Similarity=0.412  Sum_probs=106.9

Q ss_pred             CCccccceeccCCceEEEEEEcc--CCcEEEEEEEeec------------------------------cCccce-----e
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ--DGMEFAIKVFHFS------------------------------CSNEDF-----R  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~--~~~~vavK~~~~~------------------------------~~~~~~-----~  427 (527)
                      +.|++.+.||+|+||.||+|+..  +++.||||++...                              +...+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            67999999999999999999864  6899999987421                              111112     5


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++||||++|++|.+++..   .+++.++..|+.||+.||+|+|   +++||||||||+||+++.+ .+||+|||+++...
T Consensus       160 ~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~  232 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRIN  232 (681)
T ss_dssp             EEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEETT
T ss_pred             EEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhcc
Confidence            899999999999987743   5889999999999999999999   8999999999999999976 89999999998764


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..      ....||++||||
T Consensus       233 ~~------~~~~gt~~y~aP  246 (681)
T 2pzi_A          233 SF------GYLYGTPGFQAP  246 (681)
T ss_dssp             CC------SCCCCCTTTSCT
T ss_pred             cC------CccCCCccccCH
Confidence            32      234689999999

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=5.7e-20  Score=179.47  Aligned_cols=173  Identities=23%  Similarity=0.335  Sum_probs=144.4

Q ss_pred             CCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCC
Q 035895           87 MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL  166 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  166 (527)
                      +..+++|+.|++++|.++.. + .+..+ ++|+.|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence            45678999999999999875 4 35555 489999999999997665  89999999999999999864  348999999


Q ss_pred             CEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCc
Q 035895          167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNL  246 (527)
Q Consensus       167 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~  246 (527)
                      +.|++++|++++.  +.+..+++|+.|++++|++++.  ..+..+++|++|++++|+++.++.                 
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-----------------  173 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-----------------  173 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-----------------
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-----------------
Confidence            9999999999864  5689999999999999999975  578999999999999999988753                 


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccccee
Q 035895          247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       247 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (527)
                              +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus       174 --------l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 --------LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --------GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             --------hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence                    3455667777777777764 34 37788888888888888874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.82  E-value=1.4e-20  Score=186.96  Aligned_cols=137  Identities=29%  Similarity=0.357  Sum_probs=100.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++...                               +..++..++||
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            46799999999999999999987 47899999997531                               12345668999


Q ss_pred             EeccCCcHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          432 EYTTNGSLEKVLYS----SNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       432 ey~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      ||+++ +|.+++..    ....+++.....++.+++.|++|||   +. +|+||||||+||+++.++.+||+|||+++..
T Consensus       101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~  176 (327)
T 3aln_A          101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL  176 (327)
T ss_dssp             CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred             eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence            99986 88777653    2456788889999999999999999   77 9999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....   ......||..|+||
T Consensus       177 ~~~~---~~~~~~gt~~y~aP  194 (327)
T 3aln_A          177 VDSI---AKTRDAGCRPYMAP  194 (327)
T ss_dssp             ---------------------
T ss_pred             cccc---ccccCCCCccccCc
Confidence            4322   12234588899998

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.82  E-value=8.1e-21  Score=194.55  Aligned_cols=138  Identities=24%  Similarity=0.404  Sum_probs=97.0

Q ss_pred             Cccc-cceeccCCceEEEEEEcc---CCcEEEEEEEeec---------------------------c--CccceeEEEEE
Q 035895          386 GFSA-NNLIGRGSFGSVYKARLQ---DGMEFAIKVFHFS---------------------------C--SNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~-~~~lg~G~~g~vy~~~~~---~~~~vavK~~~~~---------------------------~--~~~~~~~lv~e  432 (527)
                      .|++ .++||+|+||.||+|+..   +++.||||++...                           +  ......++|||
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e  100 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFD  100 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEe
Confidence            3665 458999999999999965   5789999987421                           1  23456789999


Q ss_pred             eccCCcHHHHHHhcC--------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee----CCCCcEEEeec
Q 035895          433 YTTNGSLEKVLYSSN--------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL----DDNIVAHLSDF  500 (527)
Q Consensus       433 y~~~g~L~~~l~~~~--------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill----~~~~~~kl~Df  500 (527)
                      |+++ +|.+++....        ..+++..+..|+.|++.||+|||   +.+|+||||||+|||+    +.++.+||+||
T Consensus       101 ~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Df  176 (405)
T 3rgf_A          101 YAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADM  176 (405)
T ss_dssp             CCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECCT
T ss_pred             CCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEEC
Confidence            9975 8888775321        23788889999999999999999   9999999999999999    67899999999


Q ss_pred             ccccccCCCCCc-cceeccccccccccC
Q 035895          501 GIAKLLTGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      |+|+........ .......||++|+||
T Consensus       177 g~a~~~~~~~~~~~~~~~~~gt~~y~aP  204 (405)
T 3rgf_A          177 GFARLFNSPLKPLADLDPVVVTFWYRAP  204 (405)
T ss_dssp             TCCC----------------CCCTTCCH
T ss_pred             CCceecCCCCcccccCCCceecCcccCc
Confidence            999876532211 122345689999998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=6.9e-20  Score=171.23  Aligned_cols=151  Identities=23%  Similarity=0.260  Sum_probs=96.8

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      .+++++|.++.++..+        .++|++|++++|+++++.+..|..+. +|+.|+|++|.|++..|..|..+++|++|
T Consensus        15 ~v~c~~~~l~~iP~~l--------~~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL--------PETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             EEECTTSCCSSCCSSC--------CTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             EEEcCCCCcCcCCCcc--------CcCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            3455555555544332        14566777777777665555555543 56666666666666666666666677777


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      +|++|+|+...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            77777766655555666667777777777666666666666666777777777666666666666666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=5.6e-20  Score=196.68  Aligned_cols=190  Identities=21%  Similarity=0.268  Sum_probs=154.0

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI  145 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  145 (527)
                      .+.++.+.+....       .+..++.|+.|++++|.+..+ | .+..+ ++|+.|+|++|.+++..+  +..+++|+.|
T Consensus        25 ~l~l~~~~i~~~~-------~~~~L~~L~~L~l~~n~i~~l-~-~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           25 KDNLKKKSVTDAV-------TQNELNSIDQIIANNSDIKSV-Q-GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHTTCSCTTSEE-------CHHHHTTCCCCBCTTCCCCCC-T-TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHhccCCCccccc-------chhcCCCCCEEECcCCCCCCC-h-HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            3456666555421       245678899999999999864 3 45555 479999999999987665  8899999999


Q ss_pred             EeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCC
Q 035895          146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT  225 (527)
Q Consensus       146 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (527)
                      +|++|++++.  ..+..+++|+.|+|++|.+.+.  +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.|+
T Consensus        93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            9999999863  3688899999999999999853  4588899999999999999875  57889999999999999999


Q ss_pred             CCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       226 ~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      .+++ +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+...
T Consensus       167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            9876 88889999999999988764  468889999999999999876443

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.82  E-value=2.1e-20  Score=189.21  Aligned_cols=132  Identities=25%  Similarity=0.390  Sum_probs=105.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccce-----
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDF-----  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~-----  426 (527)
                      .+.|.+.+.||+|+||.||+|+. .+|+.||||++...                               +...+.     
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            46799999999999999999985 56899999998531                               111121     


Q ss_pred             -eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          427 -RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       427 -~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                       .++||||+. |+|.+++.   ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.
T Consensus       121 ~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~  193 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMG---MEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH  193 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred             eEEEEEcccc-ccHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence             289999998 58888773   34789999999999999999999   89999999999999999999999999999986


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....     .....+|++|+||
T Consensus       194 ~~~~-----~~~~~~t~~y~aP  210 (371)
T 4exu_A          194 ADAE-----MTGYVVTRWYRAP  210 (371)
T ss_dssp             -----------CTTCCCTTSCH
T ss_pred             cccC-----cCCcccCccccCH
Confidence            5432     2234678899998

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=185.96  Aligned_cols=139  Identities=26%  Similarity=0.369  Sum_probs=100.8

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEE
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRAL  429 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~l  429 (527)
                      ...++|+..+.||+|+||.||+|+.. +|+.||||++...                               +..++..++
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l  101 (318)
T 2dyl_A           22 AEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFI  101 (318)
T ss_dssp             CCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEE
Confidence            34577999999999999999999874 7899999997531                               223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ||||+ ++.+..+.......+++.....++.+++.||+|||   +. +|+||||||+||+++.++.+||+|||+++....
T Consensus       102 v~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A          102 AMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             EECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             EEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            99999 56777666554567889999999999999999999   74 999999999999999999999999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ..   ......+|+.|+||
T Consensus       178 ~~---~~~~~~~~~~y~aP  193 (318)
T 2dyl_A          178 DK---AKDRSAGCAAYMAP  193 (318)
T ss_dssp             ------------CCTTCCH
T ss_pred             Cc---cccccCCCccccCh
Confidence            22   12234578889998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.82  E-value=2.3e-22  Score=213.78  Aligned_cols=120  Identities=30%  Similarity=0.325  Sum_probs=73.8

Q ss_pred             CceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccc
Q 035895          214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN  293 (527)
Q Consensus       214 L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  293 (527)
                      |+.|+|++|+|+++|. +..+++|+.|++++|.+. .+|..++.+++|++|+|++|++++ +| .|+.+++|++|+|++|
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            5555555555555554 555555555555555555 455566666666666777666664 45 6666777777777777


Q ss_pred             cceeec-CCCCCCCCCCCEEeCCCCcccccCccc---hhhhccCCeeE
Q 035895          294 RLQGSI-PNSFDDLVSLESLDLSNNNLSEIIPLS---LEKLLYLNILL  337 (527)
Q Consensus       294 ~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~L~~L~  337 (527)
                      ++++.. |..|..+++|+.|+|++|++++.+|..   +..++.|+.|+
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            776554 666667777777777777776655532   23355565554

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=184.28  Aligned_cols=137  Identities=28%  Similarity=0.342  Sum_probs=110.0

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------------cC
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------------CS  422 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------------~~  422 (527)
                      -.++|++.+.||+|+||.||+|+. .+++.||||+++..                                       +.
T Consensus        29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            356799999999999999999986 56899999997421                                       11


Q ss_pred             ccceeEEEEEe-ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEeec
Q 035895          423 NEDFRALVLEY-TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDF  500 (527)
Q Consensus       423 ~~~~~~lv~ey-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~Df  500 (527)
                      .++..++|||| +++++|.+++...+ .+++..+..++.|++.||+|||   +.+|+||||||+||+++ +++.+||+||
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             cCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            22345799999 78999999997643 5789999999999999999999   89999999999999999 8899999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++......    .....+|..|+||
T Consensus       185 g~~~~~~~~~----~~~~~~~~~y~aP  207 (312)
T 2iwi_A          185 GSGALLHDEP----YTDFDGTRVYSPP  207 (312)
T ss_dssp             SSCEECCSSC----BCCCCSCTTTSCH
T ss_pred             chhhhcccCc----ccccCCcccccCc
Confidence            9998775332    2234578889998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=170.11  Aligned_cols=156  Identities=23%  Similarity=0.293  Sum_probs=118.2

Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccC-hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP-NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS  221 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  221 (527)
                      +++++++|.++.+ |..+  .+.++.|++++|++++..| ..|..+++|+.|+|++|+|++..+.+|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4778888887753 4333  2345777777777776543 3467777777777777777776666777777777777777


Q ss_pred             CCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC
Q 035895          222 NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN  301 (527)
Q Consensus       222 N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  301 (527)
                      |+++.+|                       +..|..+++|++|+|++|++.+..|..|.++++|++|+|++|++++..|.
T Consensus        91 N~l~~~~-----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           91 NRLENVQ-----------------------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             SCCCCCC-----------------------GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             CccCccC-----------------------HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            7776654                       34566778888888888888888888888889999999999999888888


Q ss_pred             CCCCCCCCCEEeCCCCcccccCc
Q 035895          302 SFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       302 ~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      .|..+++|+.|++++|++....+
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhcCCCCCCEEEecCcCCcCCCc
Confidence            89999999999999998876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=2.1e-22  Score=214.09  Aligned_cols=204  Identities=18%  Similarity=0.126  Sum_probs=152.6

Q ss_pred             CCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCc-------------cccccchhhcCCcCCcEEE-eecCccc
Q 035895           88 SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN-------------ISGGISEEIGNLTDLISID-LGGNKLN  153 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~  153 (527)
                      ..++.|+.|+|++|+++. +|..++.+. +|+.|++++|.             +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHHh-hHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            455667777777777763 566666654 57777765553             3334445555555555555 4444332


Q ss_pred             ccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhC
Q 035895          154 GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWN  233 (527)
Q Consensus       154 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~  233 (527)
                                 .|..+.+++|.++.. |.     ..|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+.+|..+..
T Consensus       424 -----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~  484 (567)
T 1dce_A          424 -----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAA  484 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGG
T ss_pred             -----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhc
Confidence                       233344555555432 11     258999999999997 566 99999999999999999999999999


Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCC-hhhhhcCCCCCEEEcccccceeecCCC---CCCCCCC
Q 035895          234 LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI-PTTIQGLKSLQFLSLGHNRLQGSIPNS---FDDLVSL  309 (527)
Q Consensus       234 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L  309 (527)
                      +++|+.|++++|.+++ +| .++.+++|++|+|++|++++.. |..|+.+++|+.|+|++|++++.+|..   +..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            9999999999999997 56 8999999999999999999887 999999999999999999999765532   2347899


Q ss_pred             CEEeC
Q 035895          310 ESLDL  314 (527)
Q Consensus       310 ~~L~l  314 (527)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            99875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.81  E-value=3.8e-20  Score=182.90  Aligned_cols=138  Identities=25%  Similarity=0.348  Sum_probs=103.7

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-----------------------------c------------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-----------------------------C------------  421 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-----------------------------~------------  421 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||||++...                             +            
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            357899999999999999999875 5899999987421                             0            


Q ss_pred             --CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC-CCCcEEEe
Q 035895          422 --SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLS  498 (527)
Q Consensus       422 --~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~-~~~~~kl~  498 (527)
                        ......++||||++ |+|.+++..  ..+++.....++.|++.||+|||   +++|+||||||+||+++ +++.+||+
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~  163 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQ--GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG  163 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhc--CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence              12346689999998 599999854  45788889999999999999999   89999999999999997 67899999


Q ss_pred             ecccccccCCCCCc-cceeccccccccccC
Q 035895          499 DFGIAKLLTGEDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       499 Dfg~a~~~~~~~~~-~~~~~~~~t~~y~aP  527 (527)
                      |||+++........ .......+|.+|+||
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (320)
T 2i6l_A          164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSP  193 (320)
T ss_dssp             CCTTCBCC--------CCCGGGSCCTTCCH
T ss_pred             cCccccccCCCcccccccccccccccccCc
Confidence            99999876432111 112234568889998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.3e-19  Score=169.39  Aligned_cols=153  Identities=24%  Similarity=0.327  Sum_probs=121.3

Q ss_pred             cEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          143 ISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       143 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      +.+++++|.++.+ |..+.  ++|+.|++++|++++..+..|..+++|+.|+|++|+|++..|.+|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5778888888754 43332  67888888888888766667888888888888888888777888888888888888888


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCC
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      +|+.+|.                       ..|..+++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..
T Consensus        91 ~l~~l~~-----------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           91 KITELPK-----------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             CCCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCCccCH-----------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence            8877654                       34566778888888888888888888888888888888888888777778


Q ss_pred             CCCCCCCCEEeCCCCcccc
Q 035895          303 FDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~~  321 (527)
                      |..+++|+.|++++|++..
T Consensus       148 ~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCEEEeCCCCcCC
Confidence            8888889999999998864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.81  E-value=1.9e-20  Score=193.53  Aligned_cols=137  Identities=27%  Similarity=0.397  Sum_probs=99.6

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEeccCCcH
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      |...+.||+|+||+||.+...+|+.||||++...                           +..++..++|||||. |+|
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL   95 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNL   95 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEH
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCH
Confidence            4556889999999998877778999999987431                           123456789999996 699


Q ss_pred             HHHHHhcCCCC------CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-------------CcEEEeec
Q 035895          440 EKVLYSSNYIL------DILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-------------IVAHLSDF  500 (527)
Q Consensus       440 ~~~l~~~~~~~------~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-------------~~~kl~Df  500 (527)
                      .+++.......      .+..+..++.||+.||+|||   +++|+||||||+||+++.+             +.+||+||
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DF  172 (434)
T 2rio_A           96 QDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF  172 (434)
T ss_dssp             HHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCC
T ss_pred             HHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEccc
Confidence            99997643211      22234679999999999999   9999999999999999654             58999999


Q ss_pred             ccccccCCCCCcc--ceeccccccccccC
Q 035895          501 GIAKLLTGEDQSM--TQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~--~~~~~~~t~~y~aP  527 (527)
                      |+|+.........  ......||++||||
T Consensus       173 G~a~~~~~~~~~~~~~~~~~~gt~~y~aP  201 (434)
T 2rio_A          173 GLCKKLDSGQSSFRTNLNNPSGTSGWRAP  201 (434)
T ss_dssp             TTCEECCC--------------CCTTSCH
T ss_pred             ccceecCCCCccceeeecCCCCCCCccCH
Confidence            9999875432211  12235689999998

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.81  E-value=3.3e-20  Score=187.62  Aligned_cols=135  Identities=22%  Similarity=0.342  Sum_probs=110.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------------cC-
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------------CS-  422 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------------~~-  422 (527)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...                                       +. 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            35799999999999999999985 57899999997521                                       00 


Q ss_pred             ---ccceeEEEEEeccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecCCCCCCeeeC------C
Q 035895          423 ---NEDFRALVLEYTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYST-PIIHCDLKPHNKLLD------D  491 (527)
Q Consensus       423 ---~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~nill~------~  491 (527)
                         .....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||   ++ +|+||||||+||+++      .
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~~  173 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPEN  173 (373)
T ss_dssp             EETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTTT
T ss_pred             cCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCcC
Confidence               111568999999 889999997643 45888899999999999999999   87 999999999999994      4


Q ss_pred             CCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          492 NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       492 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+.+||+|||+|+.....     .+...+|+.|+||
T Consensus       174 ~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aP  204 (373)
T 1q8y_A          174 LIQIKIADLGNACWYDEH-----YTNSIQTREYRSP  204 (373)
T ss_dssp             EEEEEECCCTTCEETTBC-----CCSCCSCGGGCCH
T ss_pred             cceEEEcccccccccCCC-----CCCCCCCccccCc
Confidence            458999999999876432     1234678999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=1.2e-20  Score=181.46  Aligned_cols=168  Identities=20%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             CcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC
Q 035895          142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS  221 (527)
Q Consensus       142 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  221 (527)
                      ++.+++++|.+++..  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|++++..|  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334444444444322  2344444444444444444 222 34444555555555555544332  45555555555555


Q ss_pred             CCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC
Q 035895          222 NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN  301 (527)
Q Consensus       222 N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  301 (527)
                      |+++++|....  ++|+.|++++|.+.+.  +.+..+++|++|++++|++++. | .+..+++|++|++++|++++.  .
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             CccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence            55555443222  4555555555555442  2466778888888888888754 4 678888888888888888765  6


Q ss_pred             CCCCCCCCCEEeCCCCcccccC
Q 035895          302 SFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       302 ~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      .+..+++|+.|++++|++++..
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECCC
T ss_pred             HhccCCCCCEEeCCCCcccCCc
Confidence            7788888888888888887653

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.81  E-value=3.6e-20  Score=180.42  Aligned_cols=137  Identities=26%  Similarity=0.445  Sum_probs=112.4

Q ss_pred             cCCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec-------------------------------cCccceeEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS-------------------------------CSNEDFRALVL  431 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~-------------------------------~~~~~~~~lv~  431 (527)
                      .+.|++.+.||+|+||.||+|+.. +++.||||++...                               +...+..++||
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            457999999999999999999875 7899999997431                               12335668999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+++++|.+.+...+ .+++.+...++.+++.||+|||   +.+|+||||||+||+++.   ++.+|++|||+++....
T Consensus       101 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~  176 (287)
T 2wei_A          101 ELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (287)
T ss_dssp             CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC
T ss_pred             EccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecC
Confidence            9999999999886543 5788899999999999999999   899999999999999975   35799999999987643


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....+|..|+||
T Consensus       177 ~~~---~~~~~~~~~y~aP  192 (287)
T 2wei_A          177 NTK---MKDRIGTAYYIAP  192 (287)
T ss_dssp             CSS---CSCHHHHHTTCCH
T ss_pred             CCc---cccccCcccccCh
Confidence            321   1234578889998

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=3.3e-19  Score=167.73  Aligned_cols=135  Identities=23%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             cCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeC
Q 035895          140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHL  219 (527)
Q Consensus       140 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  219 (527)
                      ++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+|++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            44555555555555544555555555555555555555444444555556666666666665555555566666666666


Q ss_pred             CCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCC
Q 035895          220 DSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD  274 (527)
Q Consensus       220 ~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~  274 (527)
                      ++|+|+.+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            6666665555444444444444444444433344455566666666666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=3.3e-21  Score=207.30  Aligned_cols=322  Identities=15%  Similarity=0.112  Sum_probs=172.0

Q ss_pred             hhhcchhccc-CCCceeecCchhhh-cCCCCCEEEccccc-cccc-c------ccccceEEcccccccCCCCCCcccccC
Q 035895           18 DVCYRICTID-SQNKLVGIVSITIF-NLSTLKVFDVDNNY-VLGR-L------SSIVDELSLSDNYLTSSTPELSFLSSM   87 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~~~~~~~-~l~~L~~L~Ls~N~-~~~~-~------~~~l~~L~Ls~N~l~~~~~~~~~~~~~   87 (527)
                      ..|..+..++ ++|.+++..+..+. .+++|+.|+|++|. +... +      -+.+++|+|++|.++...... +....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-LSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-GGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-HHHHh
Confidence            3466788888 78888877776665 79999999999883 3221 1      135899999999987643221 11223


Q ss_pred             CCCCCCCEEEcccCC--CCcc-cChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCc-------------
Q 035895           88 SNCKYLKKLDISRNP--LDGF-LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNK-------------  151 (527)
Q Consensus        88 ~~l~~L~~L~Ls~N~--l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------  151 (527)
                      ..+++|++|++++|.  +... ++..+.. .++|+.|++++|.-.+.++..+..+++|++|+++.+.             
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~-~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTR-CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHH-CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHh-CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            478899999999987  3211 1111223 3579999999883222356666666667777644331             


Q ss_pred             -------------cc----ccCcccccCCCCCCEEeccCccccccc-ChhhhcCcccCeeeeecccCCCC-CCccccCCc
Q 035895          152 -------------LN----GSISITLGKLQKLQFLSFRGNELEGSI-PNVLCHLAVLFQLDLRGNKLSGS-IPTCFGNLT  212 (527)
Q Consensus       152 -------------l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~  212 (527)
                                   +.    +.++..+..+++|+.|++++|.+++.. +..+..+++|+.|++++| +... ++.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                         11    112222234677777777777765332 223456677777777766 3211 111223456


Q ss_pred             cCceeeCC---------CCCCCC--CchhhhCCCCccEEEccCCcccccCCcccc-CCCCCCEEEcc--C----CCCCCC
Q 035895          213 ALRNLHLD---------SNELTS--IPSILWNLKDILYLDFWSNLFVGPLPSKIG-NLKVLTRIDFS--R----NNLLGD  274 (527)
Q Consensus       213 ~L~~L~L~---------~N~l~~--lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~  274 (527)
                      +|++|+++         .+.++.  +......+++|+.|.+..|.+++..+..+. .+++|+.|+++  +    |.+++.
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            66666662         233332  111122355555555555555443333332 35555666655  2    333321


Q ss_pred             C-----hhhhhcCCCCCEEEcccccceeecCCCCCC-CCCCCEEeCCCCcccccCccch-hhhccCCeeEeeeeee
Q 035895          275 I-----PTTIQGLKSLQFLSLGHNRLQGSIPNSFDD-LVSLESLDLSNNNLSEIIPLSL-EKLLYLNILLIVVVIL  343 (527)
Q Consensus       275 ~-----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~~~~~~~  343 (527)
                      .     +..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++.|+.|+++.+.+
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            1     11244455555555544 333322222222 4455555555555544333322 3445555555554443

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.81  E-value=1e-19  Score=178.44  Aligned_cols=122  Identities=29%  Similarity=0.432  Sum_probs=104.5

Q ss_pred             cCCcccc-ceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------c----CccceeEEEEE
Q 035895          384 TDGFSAN-NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------C----SNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~-~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~----~~~~~~~lv~e  432 (527)
                      .++|.+. +.||+|+||.||+|.. .+++.||+|++...                         +    ......++|||
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e   95 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   95 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEe
Confidence            4567776 7899999999999986 57899999997531                         1    12456789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      |+++|+|.+++.... ..+++..+..++.|++.||+|||   +++|+||||||+||+++.   ++.+||+|||+|+....
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A           96 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             CCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             ecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            999999999998653 35889999999999999999999   999999999999999997   78999999999987654

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.80  E-value=4.3e-20  Score=185.55  Aligned_cols=132  Identities=25%  Similarity=0.388  Sum_probs=105.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccc------
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNED------  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~------  425 (527)
                      .+.|...+.||+|+||.||+|+. .+|+.||||++...                               +...+      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            46799999999999999999986 57899999997421                               01111      


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||++ |+|.+++.   ..+++.++..++.|++.||+|||   +++|+||||||+||+++.++.+||+|||+++.
T Consensus       103 ~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  175 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMG---LKFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH  175 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred             eEEEEecccc-CCHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence            2489999998 58887763   24788899999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....     .+...+|.+|+||
T Consensus       176 ~~~~-----~~~~~~t~~y~aP  192 (353)
T 3coi_A          176 ADAE-----MTGYVVTRWYRAP  192 (353)
T ss_dssp             -------------CCSBCCSCH
T ss_pred             CCCC-----ccccccCcCcCCH
Confidence            5422     2234678899998

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=4.1e-19  Score=167.03  Aligned_cols=153  Identities=21%  Similarity=0.236  Sum_probs=116.7

Q ss_pred             cceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           64 VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        64 l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      .+.++.+++.++.++..+        .++|++|+|++|++++..|..+..+. +|+.|+|++|.|+...+..|..+++|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~--------~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--------PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--------CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEeEccCCCcCccCCCC--------CCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcC
Confidence            456777777777766543        26788888888888877777776664 688888888888776667777888888


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE  223 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  223 (527)
                      +|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|.
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            8888888888776767778888888888888887 667777788888888888888887766777788888888888887


Q ss_pred             CCC
Q 035895          224 LTS  226 (527)
Q Consensus       224 l~~  226 (527)
                      +..
T Consensus       171 ~~c  173 (229)
T 3e6j_A          171 WDC  173 (229)
T ss_dssp             BCT
T ss_pred             ccC
Confidence            764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.79  E-value=4.2e-20  Score=197.34  Aligned_cols=138  Identities=31%  Similarity=0.437  Sum_probs=110.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------c------Cccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------C------SNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~------~~~~~  426 (527)
                      .+.|++.+.||+|+||.||+|+. .+|+.||||++...                              +      ...+.
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            47799999999999999999986 56899999986421                              1      11455


Q ss_pred             eEEEEEeccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNY--ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIV---AHLSDFG  501 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~---~kl~Dfg  501 (527)
                      .++|||||+||+|.+++...+.  .+++..+..++.+++.||+|||   +.+|+||||||+||+++.++.   +|++|||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence            6899999999999999976432  4777788899999999999999   899999999999999986654   9999999


Q ss_pred             cccccCCCCCccceeccccccccccC
Q 035895          502 IAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       502 ~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++.......   .....+|.+|+||
T Consensus       170 ~a~~~~~~~~---~~~~~gt~~Y~AP  192 (676)
T 3qa8_A          170 YAKELDQGEL---CTEFVGTLQYLAP  192 (676)
T ss_dssp             CCCBTTSCCC---CCCCCSCCTTCSS
T ss_pred             cccccccccc---cccccCCcccCCh
Confidence            9987754321   2345688999998

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.79  E-value=1e-19  Score=176.55  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=94.4

Q ss_pred             hhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeecc---------------------------------------
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSC---------------------------------------  421 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~---------------------------------------  421 (527)
                      .....-|++.+.||+|+||.||+|+..+|+.||||+++...                                       
T Consensus        86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~  165 (282)
T 1zar_A           86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLA  165 (282)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCC
Confidence            33445577789999999999999999789999999985210                                       


Q ss_pred             ----CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 035895          422 ----SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL  497 (527)
Q Consensus       422 ----~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl  497 (527)
                          ...+..++||||++||+|.+ +..     +  ....++.|++.|++|+|   +.+|+||||||+|||++ ++.+||
T Consensus       166 v~~~~~~~~~~lvmE~~~g~~L~~-l~~-----~--~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl  233 (282)
T 1zar_A          166 VPKVYAWEGNAVLMELIDAKELYR-VRV-----E--NPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWI  233 (282)
T ss_dssp             SCCEEEEETTEEEEECCCCEEGGG-CCC-----S--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEE
T ss_pred             cCeEEeccceEEEEEecCCCcHHH-cch-----h--hHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEE
Confidence                01234579999999999988 421     1  24468999999999999   99999999999999999 999999


Q ss_pred             eecccccccC
Q 035895          498 SDFGIAKLLT  507 (527)
Q Consensus       498 ~Dfg~a~~~~  507 (527)
                      +|||+|+...
T Consensus       234 ~DFG~a~~~~  243 (282)
T 1zar_A          234 IDFPQSVEVG  243 (282)
T ss_dssp             CCCTTCEETT
T ss_pred             EECCCCeECC
Confidence            9999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=4.4e-20  Score=202.21  Aligned_cols=222  Identities=22%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             CCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEe
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLS  170 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  170 (527)
                      +.++.|+|++|.+... +..      .++.++|++|.|.+              +++..|++. ..+..+..+++|+.|+
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~------~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA------LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCCcc-hhh------HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEE
Confidence            4567777777776642 221      25555666665442              234445544 4455666667777777


Q ss_pred             ccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccccc
Q 035895          171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       171 l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      |++|.+. .+|..+..+++|+.|+|++|.|+ .+|..|+++++|++|+|++|+|+.+|..+..+++|++|++++|.+. .
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-c
Confidence            7777766 45555556777777777777776 5666677777777777777777777777777777777777777665 5


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCC-CCEEEcccccceeecCCCCCCCCCCCEEeCCCC--------cccc
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS-LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN--------NLSE  321 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N--------~l~~  321 (527)
                      +|..|+.+++|++|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|..      |+.|+++.|        .+.+
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~  381 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQ  381 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccc
Confidence            5666778888888888888888777777655422 224678888887777654      444556655        3444


Q ss_pred             cCccchhhhccCCeeEeeeeee
Q 035895          322 IIPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       322 ~~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      ..+..+..+..+....++.+.+
T Consensus       382 ~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          382 STEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             --------------------CC
T ss_pred             cccchhhcccccceeeeecccc
Confidence            4444445555555555555554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.78  E-value=4.6e-20  Score=195.14  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=92.0

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEee-------------------------------------ccCccceeEEE
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFHF-------------------------------------SCSNEDFRALV  430 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~-------------------------------------~~~~~~~~~lv  430 (527)
                      ...+.||+|+||+||+|+. .++.+|+|+...                                     .+..++..++|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3457899999999999954 467889987521                                     01123345899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++||+|.+++..         +..++.|+++||+|||   +++|+||||||+|||+++  .+||+|||+|+......
T Consensus       418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~  483 (540)
T 3en9_A          418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE  483 (540)
T ss_dssp             EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred             EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence            999999999999854         4578999999999999   999999999999999998  99999999999875322


Q ss_pred             Ccc-----ceeccccccccccC
Q 035895          511 QSM-----TQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~-----~~~~~~~t~~y~aP  527 (527)
                      ...     ......||++||||
T Consensus       484 ~~~~~~~~~~~~~~GT~~y~AP  505 (540)
T 3en9_A          484 DKAVDLIVFKKAVLSTHHEKFD  505 (540)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccccchhhhhhhhcCCCCcCCH
Confidence            111     11245689999998

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=2.3e-20  Score=204.45  Aligned_cols=150  Identities=25%  Similarity=0.231  Sum_probs=88.5

Q ss_pred             cccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccc
Q 035895           98 ISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE  177 (527)
Q Consensus        98 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  177 (527)
                      ++.|.+. ..|..+..+. .|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|+.+++|+.|+|++|.|+
T Consensus       208 ~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQ-LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ---------------CCC-CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             cccccee-cChhhhccCC-CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            3444444 3445555543 5777777777776 44455556777777777777777 55666777777777777777777


Q ss_pred             cccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCC-chhhhCCC-CccEEEccCCcccccCCc
Q 035895          178 GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLK-DILYLDFWSNLFVGPLPS  253 (527)
Q Consensus       178 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~-~L~~l~l~~n~~~~~~p~  253 (527)
                       .+|..|..+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|++. |..+..+. .+..+++++|.+.+.+|.
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence             56777777777777777777776 4566677777777777777777763 33333221 112345566666655554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=2.9e-19  Score=171.76  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=93.3

Q ss_pred             CCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEE
Q 035895           90 CKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFL  169 (527)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  169 (527)
                      +.++..+++++|.+++..  .+..+. +|+.|++++|.++.. + .+..+++|++|+|++|++++..+  +..+++|+.|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            344555555555555432  233332 455555555555532 2 44555555555555555554333  5555555555


Q ss_pred             eccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccc
Q 035895          170 SFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG  249 (527)
Q Consensus       170 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~  249 (527)
                      ++++|++++ +|.. .. ++|+.|++++|++                        +.+| .+..+++|+.|++++|++.+
T Consensus        91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l------------------------~~~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNEL------------------------RDTD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             ECCSSCCSC-CTTC-CC-SSCCEEECCSSCC------------------------SBSG-GGTTCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCC-cCcc-cc-CcccEEEccCCcc------------------------CCCh-hhcCcccccEEECCCCcCCC
Confidence            555555543 2221 11 4455555555554                        4443 24444444444554444443


Q ss_pred             cCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceee
Q 035895          250 PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS  298 (527)
Q Consensus       250 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  298 (527)
                      .  +.+..+++|++|++++|++.+.  ..+..+++|+.|++++|+++..
T Consensus       143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            2  2456677788888888888765  5678888888888888888754

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.78  E-value=3.6e-19  Score=173.37  Aligned_cols=114  Identities=13%  Similarity=0.033  Sum_probs=97.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCcEEEEEEEeec--------------------------------cCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHFS--------------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~~--------------------------------~~~~~~~~lv~  431 (527)
                      +.|++.+.||+|+||.||+|+.. +++.||||+++..                                +..++..++||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            56999999999999999999875 5899999997531                                12345678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ||++|++|.+++...   ....+...++.|++.||+|||   +++|+||||||+||+++.++.+||+++|...
T Consensus       111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~  177 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMP  177 (286)
T ss_dssp             ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCT
T ss_pred             EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccC
Confidence            999999999998532   355578889999999999999   9999999999999999999999999887654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=1.6e-20  Score=201.93  Aligned_cols=319  Identities=15%  Similarity=0.108  Sum_probs=212.8

Q ss_pred             hhcchhccc-CCC-ceeec-CchhhhcCCCCCEEEccccccccccc----------cccceEEcccccccCCCCCCcccc
Q 035895           19 VCYRICTID-SQN-KLVGI-VSITIFNLSTLKVFDVDNNYVLGRLS----------SIVDELSLSDNYLTSSTPELSFLS   85 (527)
Q Consensus        19 ~~~~~~~~~-s~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~~~~~~~----------~~l~~L~Ls~N~l~~~~~~~~~~~   85 (527)
                      .|..+..++ +.| .++.. .+..+.++++|++|+|++|.+.+..+          ..++.|+|++|. ..+... .+..
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~-~l~~  205 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFS-ALER  205 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHH-HHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHH-HHHH
Confidence            467888888 666 55543 44555689999999999998643211          257899999886 221110 0111


Q ss_pred             cCCCCCCCCEEEcccC-CCCcccChhHhhccccccEEEcccCc--------------------------cc----cccch
Q 035895           86 SMSNCKYLKKLDISRN-PLDGFLPRVVGNFSQSLEFIWMSDCN--------------------------IS----GGISE  134 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~n~--------------------------l~----~~~~~  134 (527)
                      .+..+++|++|++++| .+.+ +|..+..+. +|+.|+++.+.                          +.    ..++.
T Consensus       206 l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~  283 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRAVPLEK-LATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA  283 (594)
T ss_dssp             HHHHCTTCCEEECCTTSCHHH-HHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred             HHHhCCCCcEEecCCCCcHHH-HHHHHhcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence            1245789999999998 4444 566666654 68888765542                          11    12333


Q ss_pred             hhcCCcCCcEEEeecCcccccC-cccccCCCCCCEEeccCccccc-ccChhhhcCcccCeeeeec---------ccCCCC
Q 035895          135 EIGNLTDLISIDLGGNKLNGSI-SITLGKLQKLQFLSFRGNELEG-SIPNVLCHLAVLFQLDLRG---------NKLSGS  203 (527)
Q Consensus       135 ~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~~---------N~l~~~  203 (527)
                      .+..+++|++|++++|.+++.. ...+..+++|+.|++++| +.. .++.....+++|+.|++++         +.++..
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            3446789999999999976432 223568899999999988 432 2333445688999998843         455432


Q ss_pred             CCcccc-CCccCceeeCCCCCCCCC-chhh-hCCCCccEEEcc--C----Cccccc-----CCccccCCCCCCEEEccCC
Q 035895          204 IPTCFG-NLTALRNLHLDSNELTSI-PSIL-WNLKDILYLDFW--S----NLFVGP-----LPSKIGNLKVLTRIDFSRN  269 (527)
Q Consensus       204 ~p~~~~-~l~~L~~L~L~~N~l~~l-p~~~-~~l~~L~~l~l~--~----n~~~~~-----~p~~~~~l~~L~~L~Ls~N  269 (527)
                      ....+. .+++|+.|.++.|.++.. +..+ ..+++|+.|+++  +    +.++..     ++..+..+++|++|++++ 
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence            222332 478899999988888763 2233 357889999998  3    344321     122256788999999977 


Q ss_pred             CCCCCChhhhhc-CCCCCEEEcccccceeecCCCC-CCCCCCCEEeCCCCcccccCcc-chhhhccCCeeEeeeeee
Q 035895          270 NLLGDIPTTIQG-LKSLQFLSLGHNRLQGSIPNSF-DDLVSLESLDLSNNNLSEIIPL-SLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       270 ~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~~~~~~~  343 (527)
                      .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....++.|+.|+++.+..
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            666555555655 8899999999999875544444 5678999999999998655443 445688999999887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2.3e-18  Score=157.95  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             hhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC-CchhhhCCCCccEEEccCCcccccCCccccCCCCCC
Q 035895          184 LCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLT  262 (527)
Q Consensus       184 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~  262 (527)
                      +..+++|++|++++|++++..|..|+.+++|++|++++|+++. .|..+..+++|++|++++|...+.+| .+..+++|+
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            3333344444444444433333334444444444444444433 23333334444444444443222222 355566666


Q ss_pred             EEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          263 RIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       263 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus       163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            66666666654 33 5666666777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2.8e-18  Score=157.41  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=65.4

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +|+.|++++|.++. +| .+..+++|++|++++|.++.  ...+..+++|+.|++++|.+++..|..|..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            34444444444442 22 34444444444444444331  1234444444444444444444344444444444444444


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCC-CCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCC
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNE-LTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL  271 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l  271 (527)
                      +|++++..|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|.+.+. + .+..+++|++|++++|++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            444444444444444444444444444 44443 344444444444444444331 1 344444444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.8e-18  Score=170.58  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCC-EEEcccccceeecCCCCCCCCCCCEE
Q 035895          234 LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQ-FLSLGHNRLQGSIPNSFDDLVSLESL  312 (527)
Q Consensus       234 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L  312 (527)
                      +++|+.+++++|.+....+..|.++++|+.++|++| +..+.+.+|.++.+|+ .+++.+ +++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            344444444444444444455666666666666665 5545555666666666 666666 5555556666666666666


Q ss_pred             eCCCCcccccCccchhhhccCCee
Q 035895          313 DLSNNNLSEIIPLSLEKLLYLNIL  336 (527)
Q Consensus       313 ~ls~N~l~~~~p~~~~~l~~L~~L  336 (527)
                      ++++|.++.+.+..|.++..|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            666666666666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=8.5e-18  Score=167.06  Aligned_cols=238  Identities=17%  Similarity=0.120  Sum_probs=127.1

Q ss_pred             CCCCCEEEcccCCCC--cccChhHhhccccccEEEcccCccccccchhhcC--------CcCCcEEEeecCcccccCccc
Q 035895           90 CKYLKKLDISRNPLD--GFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGN--------LTDLISIDLGGNKLNGSISIT  159 (527)
Q Consensus        90 l~~L~~L~Ls~N~l~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~  159 (527)
                      +++|++|||++|++.  ...+..+    +.++.+.+..|.   +.+.+|.+        +++|++|+|.+ .++.+.+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccccc----cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            677888888888887  2222111    123455555553   34566666        88888888887 777777777


Q ss_pred             ccCCCCCCEEeccCcccccccChhhhcCcccCeeeeeccc----CCCCCCccccCCccCc-eeeCCCCCCCCCchhhh--
Q 035895          160 LGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK----LSGSIPTCFGNLTALR-NLHLDSNELTSIPSILW--  232 (527)
Q Consensus       160 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L~-~L~L~~N~l~~lp~~~~--  232 (527)
                      |.++++|+.+++++|.+....+.+|.++..+..+.+..+.    .....+.+|.++..|+ .+.+..  ...+|..++  
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~--~~~l~~~~~~~  197 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKA  197 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECT--TCCHHHHHHHT
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecC--CCcHHHHHhhc
Confidence            8888888888888887776667777777666666555421    1222333444444433 222221  112222221  


Q ss_pred             --CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCC
Q 035895          233 --NLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLE  310 (527)
Q Consensus       233 --~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  310 (527)
                        ...++..+.+.++-...........+++|+.++|++|++....+.+|.++.+|+.+++.+| ++...+..|.++++|+
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence              1223333333222110000000012455555666555555444455555555666665555 5445555555555565


Q ss_pred             -EEeCCCCcccccCccchhhhccCCeeEee
Q 035895          311 -SLDLSNNNLSEIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       311 -~L~ls~N~l~~~~p~~~~~l~~L~~L~~~  339 (527)
                       .+++.+ .++.+.+..|..+..|+.+.+.
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence             555555 4555555555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=6.8e-18  Score=154.11  Aligned_cols=129  Identities=23%  Similarity=0.349  Sum_probs=91.8

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccch-hhcCCcCCcEEEeecCcccccCcccccCCCCCCEEecc
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISE-EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR  172 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  172 (527)
                      +.+++++|.++. +|..+   ..+++.|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        11 ~~l~~s~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCc-CccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            556666666654 34322   22566666666666655553 36777777777777777777777777777777777777


Q ss_pred             CcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC
Q 035895          173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS  226 (527)
Q Consensus       173 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (527)
                      +|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            777777777777777788888888888877777778888888888888888775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=4.6e-17  Score=148.59  Aligned_cols=131  Identities=26%  Similarity=0.340  Sum_probs=97.1

Q ss_pred             CeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchh--hhCCCCccEEEccCCcccccCCccccCCCCCCEEEccC
Q 035895          191 FQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI--LWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSR  268 (527)
Q Consensus       191 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~  268 (527)
                      +.+++++|.++ .+|..+..  +|++|++++|+++.++..  +..+++|++|++++|.+.+..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            44555555554 23333322  555666666666555432  45556666666666666666677888899999999999


Q ss_pred             CCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          269 NNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       269 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      |++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998888889999999999999999999999999999999999999999987644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.6e-17  Score=148.23  Aligned_cols=135  Identities=22%  Similarity=0.318  Sum_probs=69.3

Q ss_pred             CCCCEEEcccCCCC-cccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEE
Q 035895           91 KYLKKLDISRNPLD-GFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFL  169 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  169 (527)
                      ++|++|++++|.++ +.+|..+..+. +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45556666666555 33444444332 455555555555543  445555555555555555554444444445555555


Q ss_pred             eccCccccccc-ChhhhcCcccCeeeeecccCCCCCC---ccccCCccCceeeCCCCCCCCCc
Q 035895          170 SFRGNELEGSI-PNVLCHLAVLFQLDLRGNKLSGSIP---TCFGNLTALRNLHLDSNELTSIP  228 (527)
Q Consensus       170 ~l~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~lp  228 (527)
                      ++++|.+++.. +..+..+++|+.|++++|.+++..+   ..|..+++|++|++++|.+.++|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            55555554321 1445555555555555555554333   34555555555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=1e-16  Score=142.86  Aligned_cols=133  Identities=23%  Similarity=0.272  Sum_probs=78.9

Q ss_pred             cCCcEEEeecCccc-ccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceee
Q 035895          140 TDLISIDLGGNKLN-GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLH  218 (527)
Q Consensus       140 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  218 (527)
                      ++|++|++++|+++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 34455555566666666666665543  4455555555566665555554555555555555555


Q ss_pred             CCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh---hhhhcCCCCCEEEcccccc
Q 035895          219 LDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP---TTIQGLKSLQFLSLGHNRL  295 (527)
Q Consensus       219 L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l  295 (527)
                      +++|+++.+|.                      +..+..+++|++|++++|.+++..+   ..|..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~~----------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDIST----------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGG----------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchh----------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            55555555431                      1345566667777777777765444   4667777777777777776


Q ss_pred             e
Q 035895          296 Q  296 (527)
Q Consensus       296 ~  296 (527)
                      .
T Consensus       160 ~  160 (168)
T 2ell_A          160 Q  160 (168)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.2e-16  Score=144.07  Aligned_cols=128  Identities=28%  Similarity=0.334  Sum_probs=101.4

Q ss_pred             CeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCC
Q 035895          191 FQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN  270 (527)
Q Consensus       191 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~  270 (527)
                      +.+++++|.++. +|..+.  ++|++|++++|+++.+|..+.++++|+.|++++|.+.+..+..|..+++|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456666666653 333332  46677777777777777666677777777777777776677788899999999999999


Q ss_pred             CCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                      +++..|..|.++++|++|+|++|+++...+..|..+++|+.|++++|++..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            998888899999999999999999997777789999999999999999865

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.67  E-value=3.1e-17  Score=157.04  Aligned_cols=113  Identities=23%  Similarity=0.288  Sum_probs=88.3

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcE--EEEEEEeecc-------------------------------C----------
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGME--FAIKVFHFSC-------------------------------S----------  422 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~--vavK~~~~~~-------------------------------~----------  422 (527)
                      |++.+.||+|+||.||+|.. .+|+.  ||||+++...                               .          
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            67789999999999999998 78888  9999853210                               0          


Q ss_pred             c----------cceeEEEEEeccC-C----cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCe
Q 035895          423 N----------EDFRALVLEYTTN-G----SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNK  487 (527)
Q Consensus       423 ~----------~~~~~lv~ey~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~ni  487 (527)
                      +          .+..++||||+.+ |    +|.++...    .++.....++.|++.|++|+|.  +.+||||||||+||
T Consensus       129 ~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NI  202 (258)
T 1zth_A          129 EAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNI  202 (258)
T ss_dssp             HTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSE
T ss_pred             hCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHE
Confidence            0          0123599999953 4    78776532    1233456789999999999993  56899999999999


Q ss_pred             eeCCCCcEEEeecccccccC
Q 035895          488 LLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       488 ll~~~~~~kl~Dfg~a~~~~  507 (527)
                      |+++  .++|+|||+|....
T Consensus       203 Ll~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          203 MYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             EESS--SEEECCCTTCEETT
T ss_pred             EEcC--cEEEEECcccccCC
Confidence            9998  99999999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=1.8e-15  Score=153.84  Aligned_cols=258  Identities=11%  Similarity=0.055  Sum_probs=141.8

Q ss_pred             hhcchhcccCCCceeecCchhhhcCCCCCEEEccccccccccccccceEEcccccccCCCCCCcccccCCCCCCCCEEEc
Q 035895           19 VCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDI   98 (527)
Q Consensus        19 ~~~~~~~~~s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L   98 (527)
                      .|..+..+.=-|.++.+.+.+|.+. +|+.+++..|                   ++.+...     +|.++ +|+.+++
T Consensus       111 ~~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~-------------------i~~I~~~-----aF~~~-~L~~i~l  164 (401)
T 4fdw_A          111 ILKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG-------------------LKSIGDM-----AFFNS-TVQEIVF  164 (401)
T ss_dssp             ECSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT-------------------CCEECTT-----TTTTC-CCCEEEC
T ss_pred             ecCCccEEEECCccCEehHhhcccC-CccEEEeCCC-------------------ccEECHH-----hcCCC-CceEEEe
Confidence            3333444443445556666666653 5666665544                   2222221     34443 4666666


Q ss_pred             ccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCccccc
Q 035895           99 SRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG  178 (527)
Q Consensus        99 s~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  178 (527)
                      .. .++.+.+..|.++. +|+.+++++|.++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..| ++.
T Consensus       165 p~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          165 PS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             CT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             CC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC
Confidence            54 45544445555443 566666666666655555555 356666666533 55555666666666666666654 443


Q ss_pred             ccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCC
Q 035895          179 SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNL  258 (527)
Q Consensus       179 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l  258 (527)
                      .-..+|.+ .+|+.+.+. +.++.+.+.+|.++++|+.+++.+|.+..-                  ......+..|.++
T Consensus       240 I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~------------------~~~~I~~~aF~~c  299 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD------------------PEAMIHPYCLEGC  299 (401)
T ss_dssp             ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC------------------TTCEECTTTTTTC
T ss_pred             cccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC------------------cccEECHHHhhCC
Confidence            44555666 567777773 445555666777777777777766665411                  0111223445555


Q ss_pred             CCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhh
Q 035895          259 KVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKL  330 (527)
Q Consensus       259 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l  330 (527)
                      ++|+.++|. +.+......+|.++.+|+.+.+..| ++...+..|.++ +|+.+++++|.+..+.+..|..+
T Consensus       300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            566666665 3344444455666666666666433 444555566666 66666666666655555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.7e-16  Score=138.42  Aligned_cols=128  Identities=21%  Similarity=0.277  Sum_probs=65.4

Q ss_pred             cCCcEEEeecCccc-ccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceee
Q 035895          140 TDLISIDLGGNKLN-GSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLH  218 (527)
Q Consensus       140 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  218 (527)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554 34444445555555555555555433  3444444455555555544444444444444444444


Q ss_pred             CCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh---hhhhcCCCCCEEEcc
Q 035895          219 LDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP---TTIQGLKSLQFLSLG  291 (527)
Q Consensus       219 L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~  291 (527)
                      +++|+++++|                      .+..++.+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLS----------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHH----------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChH----------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444444432                      12345555666666666666655444   356666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.1e-16  Score=139.72  Aligned_cols=126  Identities=21%  Similarity=0.289  Sum_probs=110.5

Q ss_pred             ccccEEEcccCccc-cccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeee
Q 035895          116 QSLEFIWMSDCNIS-GGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD  194 (527)
Q Consensus       116 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  194 (527)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57999999999998 67888889999999999999999976  7789999999999999999987898898999999999


Q ss_pred             eecccCCCC-CCccccCCccCceeeCCCCCCCCCch----hhhCCCCccEEEcc
Q 035895          195 LRGNKLSGS-IPTCFGNLTALRNLHLDSNELTSIPS----ILWNLKDILYLDFW  243 (527)
Q Consensus       195 L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~l~l~  243 (527)
                      +++|++++. .+..+..+++|++|++++|.++++|.    .+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999974 34789999999999999999998775    45556666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=2.5e-15  Score=152.83  Aligned_cols=242  Identities=9%  Similarity=0.021  Sum_probs=188.7

Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCE
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF  168 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  168 (527)
                      .+..++.+.+.. .++.+....|.+.  +|+.+.+..+ ++.+...+|.+. +|+.+.+.. .++.+.+.+|.++++|+.
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~--~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS--QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC--CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC--CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            346677777764 4665555666652  5888888766 666777778774 688888875 676677778888888888


Q ss_pred             EeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccc
Q 035895          169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFV  248 (527)
Q Consensus       169 L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~  248 (527)
                      ++++.|.++......|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..| ++.++...+.-..|+.+.+ .+.+.
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~  260 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVT  260 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCcc
Confidence            88888888866666666 578888888754 77677788888889999998874 6777665444478888888 45566


Q ss_pred             ccCCccccCCCCCCEEEccCCCCC-----CCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          249 GPLPSKIGNLKVLTRIDFSRNNLL-----GDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      ..-+.+|.++++|+.+++.+|.+.     ...+.+|.++++|+.+.+. +.++......|.++++|+.+.+..| ++.+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            666788999999999999988765     3567789999999999999 5588788899999999999999655 88888


Q ss_pred             ccchhhhccCCeeEeeeeee
Q 035895          324 PLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       324 p~~~~~l~~L~~L~~~~~~~  343 (527)
                      +..|..+ .|+.+.+..+..
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSC
T ss_pred             HHhCCCC-CCCEEEEcCCCC
Confidence            8999999 999998876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=4.5e-16  Score=142.07  Aligned_cols=128  Identities=23%  Similarity=0.337  Sum_probs=89.8

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccC
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRG  173 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  173 (527)
                      +.+++++|.++. +|..+   ..+|+.|+|++|.|+ .+|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++
T Consensus        13 ~~l~~~~~~l~~-ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCc-CCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            456666666664 33322   235677777777776 4456677777777777777777776666777777777777777


Q ss_pred             cccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCC
Q 035895          174 NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS  226 (527)
Q Consensus       174 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (527)
                      |++++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            77776666677777777777777777776666677777778888887777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.9e-16  Score=138.36  Aligned_cols=133  Identities=21%  Similarity=0.241  Sum_probs=100.8

Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEecc
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR  172 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  172 (527)
                      .+.+++++|+++.+ |..+   ..+|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccC-CCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            45667777777653 3322   2367777777777776666677778888888888888887766677888888888888


Q ss_pred             CcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch
Q 035895          173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS  229 (527)
Q Consensus       173 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~  229 (527)
                      +|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.++..++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887666677888888888888888887777777888888888888888876443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=3e-15  Score=134.56  Aligned_cols=133  Identities=26%  Similarity=0.301  Sum_probs=94.8

Q ss_pred             CCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCC
Q 035895          166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN  245 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n  245 (527)
                      .+.+++++|+++ .+|..+  .++|+.|++++|++++..+..|..+++|++|++++|+++.+                  
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------   67 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL------------------   67 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe------------------
Confidence            345566666655 233222  24556666666666555555555556666666666555544                  


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          246 LFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       246 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                           .+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+..|
T Consensus        68 -----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           68 -----PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -----ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence                 34556778889999999999988777788999999999999999997777778889999999999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=3.8e-18  Score=156.64  Aligned_cols=138  Identities=22%  Similarity=0.247  Sum_probs=70.7

Q ss_pred             hcCCcCCcEEEeecCcccccCcc------cccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCcccc
Q 035895          136 IGNLTDLISIDLGGNKLNGSISI------TLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFG  209 (527)
Q Consensus       136 ~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  209 (527)
                      +.....++.++++.+.+++..|.      .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445566666666666555443      45555555555555555553 34 4555555555555555555 3344444


Q ss_pred             CCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh-hhhhcCCCCCEE
Q 035895          210 NLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP-TTIQGLKSLQFL  288 (527)
Q Consensus       210 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L  288 (527)
                      .+++|++|++++|+++++| .                        +..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus        91 ~~~~L~~L~L~~N~l~~l~-~------------------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLS-G------------------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHH-H------------------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             cCCcCCEEECcCCcCCcCC-c------------------------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence            4455555555555555443 2                        3334445555555555543221 245555555555


Q ss_pred             EcccccceeecCC
Q 035895          289 SLGHNRLQGSIPN  301 (527)
Q Consensus       289 ~L~~N~l~~~~p~  301 (527)
                      ++++|++.+..|.
T Consensus       146 ~l~~N~l~~~~~~  158 (198)
T 1ds9_A          146 LLAGNPLYNDYKE  158 (198)
T ss_dssp             EECSCHHHHHHHT
T ss_pred             EecCCcccccccc
Confidence            5555555544433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=4.2e-16  Score=140.05  Aligned_cols=135  Identities=18%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             cCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCC
Q 035895           86 SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK  165 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  165 (527)
                      .+.++++|++|++++|+++.+ |. +....++|+.|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            356677888888888888854 43 344444677888888877754  56677777777777777777655555567777


Q ss_pred             CCEEeccCcccccccCh--hhhcCcccCeeeeecccCCCCCCc----cccCCccCceeeCCCCCCCC
Q 035895          166 LQFLSFRGNELEGSIPN--VLCHLAVLFQLDLRGNKLSGSIPT----CFGNLTALRNLHLDSNELTS  226 (527)
Q Consensus       166 L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~  226 (527)
                      |+.|++++|.++ .+|.  .+..+++|+.|++++|.++. .|.    .+..+++|+.|++++|.+.+
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            777777777775 3444  56667777777777777763 333    36666677777776666544

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.61  E-value=2.2e-16  Score=157.43  Aligned_cols=111  Identities=14%  Similarity=0.204  Sum_probs=87.7

Q ss_pred             CccccceeccCCceEEEEEEccCCcEEEEEEEeeccC-------------------------------------------
Q 035895          386 GFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCS-------------------------------------------  422 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~~-------------------------------------------  422 (527)
                      -|++.+.||+|+||.||+|..++|+.||||+++....                                           
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3899999999999999999999999999998642100                                           


Q ss_pred             cc------ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC---
Q 035895          423 NE------DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI---  493 (527)
Q Consensus       423 ~~------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~---  493 (527)
                      ..      ...++||||++|++|.++..     .+  ....++.|++.++.|+|   +.+||||||||.|||+++++   
T Consensus       176 ~vp~p~~~~~~~LVME~i~G~~L~~l~~-----~~--~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd~~  245 (397)
T 4gyi_A          176 PVPEPIAQSRHTIVMSLVDALPMRQVSS-----VP--DPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKDAE  245 (397)
T ss_dssp             SCCCEEEEETTEEEEECCSCEEGGGCCC-----CS--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEECSS
T ss_pred             CCCeeeeccCceEEEEecCCccHhhhcc-----cH--HHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCCcc
Confidence            00      01249999999998865431     11  23457899999999999   89999999999999998776   


Q ss_pred             -------cEEEeeccccccc
Q 035895          494 -------VAHLSDFGIAKLL  506 (527)
Q Consensus       494 -------~~kl~Dfg~a~~~  506 (527)
                             .+.|+||+=+...
T Consensus       246 d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          246 DPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             CTTSEEEEEEECCCTTCEET
T ss_pred             cccccccceEEEEeCCcccC
Confidence                   3889999976543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=8.9e-16  Score=137.91  Aligned_cols=133  Identities=22%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             cCCcCCcEEEeecCcccccCcccccCCC-CCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCc
Q 035895          137 GNLTDLISIDLGGNKLNGSISITLGKLQ-KLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALR  215 (527)
Q Consensus       137 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  215 (527)
                      .++.+|++|++++|+++.. +. +..+. +|+.|++++|.+++.  ..|..+++|++|++++|+|++..|..|..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3445555555555555532 22 22222 555555555555533  3455555555555555555544444445555555


Q ss_pred             eeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChh----hhhcCCCCCEEEcc
Q 035895          216 NLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT----TIQGLKSLQFLSLG  291 (527)
Q Consensus       216 ~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~  291 (527)
                      +|++++|+++.+|..                      ..+..+++|++|++++|.+.. +|.    .+..+++|++|+++
T Consensus        92 ~L~L~~N~i~~~~~~----------------------~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           92 ELILTNNSLVELGDL----------------------DPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             EEECCSCCCCCGGGG----------------------GGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             EEECCCCcCCcchhh----------------------HhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCC
Confidence            666655555555430                      123444555555555555542 333    25556666666666


Q ss_pred             cccce
Q 035895          292 HNRLQ  296 (527)
Q Consensus       292 ~N~l~  296 (527)
                      +|.+.
T Consensus       149 ~n~~~  153 (176)
T 1a9n_A          149 KVKLK  153 (176)
T ss_dssp             ECCHH
T ss_pred             cCCHH
Confidence            65543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=1.5e-17  Score=152.71  Aligned_cols=129  Identities=22%  Similarity=0.252  Sum_probs=107.1

Q ss_pred             ccccEEEcccCccccccch------hhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcc
Q 035895          116 QSLEFIWMSDCNISGGISE------EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAV  189 (527)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  189 (527)
                      ..++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3688888888888887776      89999999999999999997 55 8899999999999999998 67888888999


Q ss_pred             cCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch--hhhCCCCccEEEccCCcccc
Q 035895          190 LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS--ILWNLKDILYLDFWSNLFVG  249 (527)
Q Consensus       190 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~l~l~~n~~~~  249 (527)
                      |+.|++++|++++ +| .+..+++|++|++++|+++.+|.  .+..+++|++|++++|.+.+
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            9999999999997 44 68999999999999999998764  44445555555554444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=2.6e-14  Score=127.55  Aligned_cols=109  Identities=26%  Similarity=0.274  Sum_probs=90.7

Q ss_pred             CceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccc
Q 035895          214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN  293 (527)
Q Consensus       214 L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  293 (527)
                      .+++++++|.++.+|..+.  +.+++|++++|.+.+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4566777777777765542  56677777777777777788899999999999999999888888999999999999999


Q ss_pred             cceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       294 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      ++++..+..|..+++|+.|+|++|+++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9998777889999999999999999976543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=6.2e-14  Score=125.49  Aligned_cols=107  Identities=24%  Similarity=0.228  Sum_probs=88.0

Q ss_pred             ceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccc
Q 035895          215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNR  294 (527)
Q Consensus       215 ~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  294 (527)
                      +.+++++|+++.+|..+.  +.|+.|++++|.+.+..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            566667777766666443  566777777777777777888899999999999999998777778999999999999999


Q ss_pred             ceeecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          295 LQGSIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       295 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      |++..+..|..+++|+.|+|++|++....
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99777777999999999999999997643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=5.6e-14  Score=125.33  Aligned_cols=108  Identities=22%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      .+.+++++|.++. +|..+  .++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4455555555553 22222  24566666666666666666666666777777777777655555666777777777777


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCc
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIP  228 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp  228 (527)
                      |+|++..+..|..+++|++|+|++|.++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            7777666666777777777777777776544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=7.3e-14  Score=125.05  Aligned_cols=108  Identities=25%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             cEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecc
Q 035895          119 EFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN  198 (527)
Q Consensus       119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N  198 (527)
                      +.+++++|.++. +|..+.  ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            445555555542 232222  45666666666666555666666666666666666666555555666777777777777


Q ss_pred             cCCCCCCccccCCccCceeeCCCCCCCCCch
Q 035895          199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPS  229 (527)
Q Consensus       199 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~  229 (527)
                      +|++..+..|..+++|++|+|++|.+...+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776666667777777777777777776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=1.6e-14  Score=145.51  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             ccCceeeCCCCCCCC-----CchhhhCCCCccEEEccCCcccc----cCCccccCCCCCCEEEccCCCCCCC----Chhh
Q 035895          212 TALRNLHLDSNELTS-----IPSILWNLKDILYLDFWSNLFVG----PLPSKIGNLKVLTRIDFSRNNLLGD----IPTT  278 (527)
Q Consensus       212 ~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  278 (527)
                      ++|++|+|++|.|+.     ++..+...++|++|++++|.+..    .++..+...+.|++|+|++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            445555555555543     12222333334444444433321    1123334445566666666665432    2223


Q ss_pred             hhcCCCCCEEEcccccce
Q 035895          279 IQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~  296 (527)
                      +...++|++|+|++|.|+
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            344455556666555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=3.6e-11  Score=122.18  Aligned_cols=290  Identities=13%  Similarity=0.093  Sum_probs=167.8

Q ss_pred             ceeecCchhhhcCCCCCEEEccccccccccc------cccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCC
Q 035895           31 KLVGIVSITIFNLSTLKVFDVDNNYVLGRLS------SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLD  104 (527)
Q Consensus        31 ~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~------~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  104 (527)
                      .++.+...+|.++++|+.+.+..+ +...-.      ..|+.++|..+ ++.+...     +|.++++|+.+.+..+ +.
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-----aF~~c~~L~~i~~p~~-l~  129 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRC-----TFSGCYALKSILLPLM-LK  129 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT-----TTTTCTTCCCCCCCTT-CC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccch-----hhcccccchhhcccCc-ee
Confidence            577788888888888888888754 221111      23666777644 4444332     4677777777666543 33


Q ss_pred             cccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhh
Q 035895          105 GFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL  184 (527)
Q Consensus       105 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~  184 (527)
                      .+....|....  +...... ..+..+...+|.++.+|+.+.+..+. ..+....|.++.+|+.+.+..| ++......|
T Consensus       130 ~i~~~aF~~~~--~~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F  204 (394)
T 4fs7_A          130 SIGVEAFKGCD--FKEITIP-EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF  204 (394)
T ss_dssp             EECTTTTTTCC--CSEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred             eecceeeeccc--ccccccC-ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence            33333343321  2222211 12222334566666667777665443 3345556666666666666554 333344455


Q ss_pred             hcCcccCeeeeecccC---------------------CCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEcc
Q 035895          185 CHLAVLFQLDLRGNKL---------------------SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFW  243 (527)
Q Consensus       185 ~~l~~L~~L~L~~N~l---------------------~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~  243 (527)
                      .++..|+.+.+..+..                     +.....+|.++..|+.+.+..+...--...+.....+..+...
T Consensus       205 ~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~  284 (394)
T 4fs7_A          205 AECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYG  284 (394)
T ss_dssp             TTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEEC
T ss_pred             ccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccC
Confidence            5655555555544322                     2222334555555555555544322112234444555555444


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       244 ~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      .+.+   ....|..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..| ++.+.
T Consensus       285 ~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          285 SVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             SSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            3322   2345667778888888654 55455667888888888888654 66666778888888888888766 77777


Q ss_pred             ccchhhhccCCeeEee
Q 035895          324 PLSLEKLLYLNILLIV  339 (527)
Q Consensus       324 p~~~~~l~~L~~L~~~  339 (527)
                      ...|.++..|+.+.+.
T Consensus       359 ~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          359 ANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTBTTCTTCCEEEEE
T ss_pred             HHHhhCCCCCCEEEEC
Confidence            7788888888877654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.4e-13  Score=138.56  Aligned_cols=187  Identities=13%  Similarity=0.140  Sum_probs=89.7

Q ss_pred             CCCCEEEcccCCCCcccChhHhhc----cccccEEEcccCccccccchhh-cCCcCCcEEEeecCcccccCcccc-----
Q 035895           91 KYLKKLDISRNPLDGFLPRVVGNF----SQSLEFIWMSDCNISGGISEEI-GNLTDLISIDLGGNKLNGSISITL-----  160 (527)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~-----  160 (527)
                      +.|+.|+|++|.++......+...    ..+|+.|+|++|.++......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            446666666666654332333222    1246666666666543222222 234456666666666653322222     


Q ss_pred             cCCCCCCEEeccCccccc----ccChhhhcCcccCeeeeecccCCCC----CCccccCCccCceeeCCCCCCCCCchhhh
Q 035895          161 GKLQKLQFLSFRGNELEG----SIPNVLCHLAVLFQLDLRGNKLSGS----IPTCFGNLTALRNLHLDSNELTSIPSILW  232 (527)
Q Consensus       161 ~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~lp~~~~  232 (527)
                      ...++|+.|+|++|.++.    .++..+...++|++|+|++|.|+..    ++..+...++|++|+|++|.|+....   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~---  228 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA---  228 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH---
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH---
Confidence            134556666666666543    1233334455566666666655431    12334445556666666665543211   


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCC-----CCEEE--cccccce
Q 035895          233 NLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS-----LQFLS--LGHNRLQ  296 (527)
Q Consensus       233 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-----L~~L~--L~~N~l~  296 (527)
                                      ..++..+...+.|++|+|++|.++..-...+..+..     |+.+.  +..|.+.
T Consensus       229 ----------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          229 ----------------LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             ----------------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             ----------------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence                            012233344566777777777776544444444321     55555  5555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.5e-12  Score=127.31  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=56.7

Q ss_pred             eeeecc-cCCCCCCccccCCccCceeeCCC-CCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCC
Q 035895          193 LDLRGN-KLSGSIPTCFGNLTALRNLHLDS-NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNN  270 (527)
Q Consensus       193 L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~  270 (527)
                      ++++++ ++++ +|. +..+++|+.|+|++ |+|+.+|                       +..|+.+++|++|+|++|+
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~-----------------------~~~~~~l~~L~~L~l~~N~   67 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLE-----------------------LRDLRGLGELRNLTIVKSG   67 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEEC-----------------------GGGSCSCCCCSEEECCSSC
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcC-----------------------hhHhccccCCCEEECCCCc
Confidence            455555 5553 344 55555555555553 5555544                       4445555556666666666


Q ss_pred             CCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          271 LLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      +++..|..|.++++|++|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus        68 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6555555556666666666666666554444454444 666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.5e-12  Score=127.32  Aligned_cols=105  Identities=18%  Similarity=0.161  Sum_probs=78.9

Q ss_pred             EEEcccC-ccccccchhhcCCcCCcEEEeec-CcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          120 FIWMSDC-NISGGISEEIGNLTDLISIDLGG-NKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       120 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      .++++++ +++. +|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3466666 6664 444 77777788888875 788777777788888888888888888877777788888888888888


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCC
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSI  227 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l  227 (527)
                      |+|++.++..|..++ |+.|+|++|.+...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            888877766776665 88888888887753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.24  E-value=1.4e-10  Score=117.88  Aligned_cols=298  Identities=12%  Similarity=0.125  Sum_probs=201.9

Q ss_pred             hcchhcccCCCceeecCchhhhcCCCCCEEEccccccccccc-------cccceEEcccccccCCC--------------
Q 035895           20 CYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS-------SIVDELSLSDNYLTSST--------------   78 (527)
Q Consensus        20 ~~~~~~~~s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~-------~~l~~L~Ls~N~l~~~~--------------   78 (527)
                      |..+..+.=.+.++.+...+|.++++|+.+++..+- . .+.       ..++.+.+..+ ++.+.              
T Consensus        70 c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l-~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           70 CRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSV-K-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             CTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTC-C-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred             CCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCc-e-EccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence            667777764466889999999999999999997662 1 111       01222222211 11100              


Q ss_pred             -CCCc--ccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccccc
Q 035895           79 -PELS--FLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS  155 (527)
Q Consensus        79 -~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  155 (527)
                       ....  -..+|.+|++|+.+.+..+ +..+....|.... +|+.+.+..+ ++.+...+|.++..|+.+.+..+...  
T Consensus       147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--  221 (394)
T 4fs7_A          147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--  221 (394)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred             CccccccchhhhcccCCCcEEecCCc-cceeccccccCCC-CceEEEcCCC-ceEeCchhhccccccceeecCCCceE--
Confidence             0000  0135777888888888755 3334445555543 6888877766 55566777788888888877766543  


Q ss_pred             CcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCC
Q 035895          156 ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLK  235 (527)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~  235 (527)
                      ....+....+|+.+.+..+ ++..-...|.++..|+.+.+..+... ....+|..+..++.+....+.+..  ..+..+.
T Consensus       222 i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~  297 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCS  297 (394)
T ss_dssp             ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCT
T ss_pred             eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc--ccccccc
Confidence            2223334567777777543 33344567888999999999887554 677889999999999887765322  3456778


Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCC
Q 035895          236 DILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS  315 (527)
Q Consensus       236 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls  315 (527)
                      +|..+.+..+ +...-..+|.++.+|+.++|.. .+...-..+|.++.+|+.+.+..| ++.....+|.++++|+.+++.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            8999888654 5555667899999999999975 466566789999999999999877 776778899999999999997


Q ss_pred             CCcccccCccchhhhccCC
Q 035895          316 NNNLSEIIPLSLEKLLYLN  334 (527)
Q Consensus       316 ~N~l~~~~p~~~~~l~~L~  334 (527)
                      .+ ++. +...|.++..|+
T Consensus       375 ~~-~~~-~~~~F~~c~~L~  391 (394)
T 4fs7_A          375 KR-LEQ-YRYDFEDTTKFK  391 (394)
T ss_dssp             GG-GGG-GGGGBCTTCEEE
T ss_pred             CC-CEE-hhheecCCCCCc
Confidence            54 332 345566666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=3.1e-09  Score=107.79  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             hCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCE
Q 035895          232 WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES  311 (527)
Q Consensus       232 ~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  311 (527)
                      .++..|+.+.+..+. ...-...|.+++.|+.+.+. +.+......+|.++.+|+.+.+..+ ++.....+|.++.+|+.
T Consensus       262 ~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            344555555553332 22334455666666666664 3344344455666666666666543 44455556666666666


Q ss_pred             EeCCCCcccccCccchhhhccCCeeEee
Q 035895          312 LDLSNNNLSEIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       312 L~ls~N~l~~~~p~~~~~l~~L~~L~~~  339 (527)
                      +.+..+ ++.+....|.++..|+.+.+.
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            666433 555555666666666665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.06  E-value=1.9e-08  Score=101.93  Aligned_cols=244  Identities=15%  Similarity=0.160  Sum_probs=142.5

Q ss_pred             cCCCCCCCCEEEcccCC---CCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccC
Q 035895           86 SMSNCKYLKKLDISRNP---LDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGK  162 (527)
Q Consensus        86 ~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  162 (527)
                      +|.+|++|+.+.++.|.   ++.+-...|.... .|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..+....|..
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~  158 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY  158 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence            56777777777776653   5544444454443 4666555443 44455666777777777777543 33355566777


Q ss_pred             CCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhC---------
Q 035895          163 LQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWN---------  233 (527)
Q Consensus       163 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~---------  233 (527)
                      +.+|+.+.+..+ ++..-..+|.+ ..|+.+.+..+-. .....+|.++.++.......+....+...+..         
T Consensus       159 c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T 4gt6_A          159 CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL  235 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred             ccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccc
Confidence            777777777654 33233444543 4566666655432 24455666666666666655554433322111         


Q ss_pred             -----CCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCC
Q 035895          234 -----LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVS  308 (527)
Q Consensus       234 -----l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  308 (527)
                           ...+..+.+. +.+...-..+|..+..|+.+.+..+.. .....+|.++.+|+.+.+. +.++......|.++.+
T Consensus       236 ~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~  312 (394)
T 4gt6_A          236 IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS  312 (394)
T ss_dssp             EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT
T ss_pred             cccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCC
Confidence                 1112222221 222333345677777777777765443 2445667777788877775 4455566677777788


Q ss_pred             CCEEeCCCCcccccCccchhhhccCCeeEee
Q 035895          309 LESLDLSNNNLSEIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       309 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~  339 (527)
                      |+.+++..+ ++.+....|..+..|+.+.+.
T Consensus       313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            888887654 666666777777777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=1.2e-07  Score=95.46  Aligned_cols=292  Identities=13%  Similarity=0.083  Sum_probs=153.3

Q ss_pred             cchhcccCCCceeecCchhhhcCCCCCEEEcccccccccccc------ccceEEcccccccCCCCCCcccccCCCCCCCC
Q 035895           21 YRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSS------IVDELSLSDNYLTSSTPELSFLSSMSNCKYLK   94 (527)
Q Consensus        21 ~~~~~~~s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~------~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~   94 (527)
                      ..+..+.=...++.+...+|.++.+|+.+++..+ +. .+..      .+..+.+..+ ++.+...     +|.++ +|+
T Consensus        46 ~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c~l~~i~~~~~-l~~I~~~-----aF~~~-~L~  116 (379)
T 4h09_A           46 DRISEVRVNSGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADTKLQSYTGMER-VKKFGDY-----VFQGT-DLD  116 (379)
T ss_dssp             GGCSEEEECTTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCCCCEEEECTT-CCEECTT-----TTTTC-CCS
T ss_pred             cCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCCCCceEECCce-eeEeccc-----eeccC-Ccc
Confidence            3444444345688888999999999999999755 22 1111      2334444322 3333222     35444 677


Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccccc------------CcccccC
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS------------ISITLGK  162 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~  162 (527)
                      .+++..+ ++......|...  +++.+.+..+ ++.+....|..+.+++.+.+..+.....            ....+..
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~--~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNS--SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTC--CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             cccCCCc-cccccccccccc--eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            7777654 333333334332  4555555433 4445556677777777777665443211            1112233


Q ss_pred             CCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEE
Q 035895          163 LQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLD  241 (527)
Q Consensus       163 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~  241 (527)
                      ...+..+.+....- ......+.....|+.+.+..+ +......+|.++..|+.+.+..+ ++.+.. .+.++..|..+.
T Consensus       193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            33444444332221 133345555666666665543 33344556666666766666554 444433 334455555555


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          242 FWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       242 l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                      +..+ +.......|.++++|+.+.+..+.+......+|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+ ++.
T Consensus       270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~  346 (379)
T 4h09_A          270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL  346 (379)
T ss_dssp             ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence            5332 33333445566666666666655555444556666666666666543 44444556666666666666433 444


Q ss_pred             cCccchhhhc
Q 035895          322 IIPLSLEKLL  331 (527)
Q Consensus       322 ~~p~~~~~l~  331 (527)
                      +-...|.++.
T Consensus       347 I~~~aF~~c~  356 (379)
T 4h09_A          347 IESGAFEGSS  356 (379)
T ss_dssp             ECTTTTTTSS
T ss_pred             EchhHhhCCC
Confidence            4444554443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.92  E-value=2.7e-09  Score=101.75  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=89.8

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCccceeEE
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNEDFRAL  429 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~~~~~l  429 (527)
                      +....++|+.....+.|+++.||++... +..+++|+....                              +...+..++
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence            3455678999999999999999999865 678999997521                              112345679


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-------------------------------------  472 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-------------------------------------  472 (527)
                      ||||++|.++.+.+..      ......++.+++++++.||..                                     
T Consensus        88 v~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T 3tm0_A           88 LMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             EEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred             EEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence            9999999999876321      112346788999999999951                                     


Q ss_pred             -------------------CCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          473 -------------------YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       473 -------------------~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                                         ....++|+|++|.||+++++..+.|.||+.+..
T Consensus       162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                               014589999999999998766667999998764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=4.2e-10  Score=112.30  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=31.6

Q ss_pred             CCCCCEEEccCCCCCCCChhhhh---cCCCCCEEEcccccceee----cCCCCCCCCCCCEEeCCCCcccc
Q 035895          258 LKVLTRIDFSRNNLLGDIPTTIQ---GLKSLQFLSLGHNRLQGS----IPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       258 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                      +++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            45555555555555432222222   345566666666655532    22222344566666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=2.4e-09  Score=106.86  Aligned_cols=63  Identities=22%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             cCCCCCEEEcccccceeecCCCC---CCCCCCCEEeCCCCccccc----CccchhhhccCCeeEeeeeee
Q 035895          281 GLKSLQFLSLGHNRLQGSIPNSF---DDLVSLESLDLSNNNLSEI----IPLSLEKLLYLNILLIVVVIL  343 (527)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~~~~~~~  343 (527)
                      .+++|++|+|.+|.+....+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+++.+.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            46778888888777753221111   2466788888888887763    344456677788887776654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.83  E-value=8.6e-09  Score=97.89  Aligned_cols=117  Identities=15%  Similarity=0.050  Sum_probs=82.2

Q ss_pred             hhhcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCccceeEEEEE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNEDFRALVLE  432 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~~~~~lv~e  432 (527)
                      .....+|.+..+.+.|..+.||++...+|..+++|+....                            ....+..++|||
T Consensus        16 ~~~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e   95 (264)
T 1nd4_A           16 VERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG   95 (264)
T ss_dssp             TTTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred             HHhcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence            3445667665544566679999998877888999986421                            011234589999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCC---------------------------------------
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY---------------------------------------  473 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~---------------------------------------  473 (527)
                      |++|.++.  ...    .+   ...++.++++.++.+|...                                       
T Consensus        96 ~i~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (264)
T 1nd4_A           96 EVPGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA  166 (264)
T ss_dssp             CCSSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred             ecCCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence            99998884  211    12   2346677888888888321                                       


Q ss_pred             ----------------CCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          474 ----------------STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       474 ----------------~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                                      ...++|+|++|.||++++++.+.+.|||.+..-
T Consensus       167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence                            122999999999999987766779999998753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.71  E-value=7.9e-07  Score=89.41  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             CccccCCccCceeeCCCCCCCCCc-hhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCC
Q 035895          205 PTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLK  283 (527)
Q Consensus       205 p~~~~~l~~L~~L~L~~N~l~~lp-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  283 (527)
                      ..+|....+|+.+.+..+ ++.++ ..+.++..|..+.+..+ +...-...|.++..|+.+.+..+ +.......|.++.
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            344555566666666543 33333 34455667777776554 44444566777777777777543 4444456777788


Q ss_pred             CCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEe
Q 035895          284 SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLI  338 (527)
Q Consensus       284 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~  338 (527)
                      +|+.+.+.++.++......|.++.+|+.+.+..+ ++.+....|.++..|+.+.+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            8888888777777666777888888888887644 66666677777777765543

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.49  E-value=2.1e-07  Score=93.00  Aligned_cols=114  Identities=15%  Similarity=0.184  Sum_probs=82.9

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEe--ec--------------------------------cCcc---ceeEEE
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFH--FS--------------------------------CSNE---DFRALV  430 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~--~~--------------------------------~~~~---~~~~lv  430 (527)
                      ...+.++.|.++.||++...+ ..+++|+..  ..                                +...   +..++|
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v  119 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI  119 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred             ceEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence            346789999999999998765 567787654  10                                1111   236899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCC-------------------------------------
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY-------------------------------------  473 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~-------------------------------------  473 (527)
                      |||++|..+.+..   -..++..++..++.++++.|+.+|...                                     
T Consensus       120 me~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (359)
T 3dxp_A          120 MEFVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA  196 (359)
T ss_dssp             EECCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred             EEecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence            9999998774311   123567777888999999999999420                                     


Q ss_pred             ------------------CCCeEecCCCCCCeeeCCCCc--EEEeecccccc
Q 035895          474 ------------------STPIIHCDLKPHNKLLDDNIV--AHLSDFGIAKL  505 (527)
Q Consensus       474 ------------------~~~iiHrdlk~~nill~~~~~--~kl~Dfg~a~~  505 (527)
                                        ...+||+|+++.||+++.++.  +.|.||+.+..
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                              256999999999999987653  68999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=6.7e-08  Score=86.89  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=46.0

Q ss_pred             CCCCCCCCEEEcccC-CCCcccCh----hHhhccccccEEEcccCccccc----cchhhcCCcCCcEEEeecCccccc--
Q 035895           87 MSNCKYLKKLDISRN-PLDGFLPR----VVGNFSQSLEFIWMSDCNISGG----ISEEIGNLTDLISIDLGGNKLNGS--  155 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--  155 (527)
                      +...+.|++|+|++| .+...-..    .+... ++|++|+|++|.|...    +...+...+.|++|+|++|.|+..  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            455677777777777 77542111    11221 3466666666666421    223334445566666666665532  


Q ss_pred             --CcccccCCCCCCEEec--cCcccc
Q 035895          156 --ISITLGKLQKLQFLSF--RGNELE  177 (527)
Q Consensus       156 --~~~~~~~l~~L~~L~l--~~N~l~  177 (527)
                        +...+...++|+.|+|  ++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence              2233444455555555  455554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=3.5e-08  Score=93.47  Aligned_cols=60  Identities=27%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             cccEEEcccCccccc--cchhhcCCcCCcEEEeecCcccccCcccccCCC--CCCEEeccCccccc
Q 035895          117 SLEFIWMSDCNISGG--ISEEIGNLTDLISIDLGGNKLNGSISITLGKLQ--KLQFLSFRGNELEG  178 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~  178 (527)
                      +|+.|+|++|.|+++  +|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+.+
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            455555555555442  233444455555555555555432  1122222  44445555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1e-07  Score=85.60  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             hcCCcCCcEEEeecC-ccccc----CcccccCCCCCCEEeccCcccccc----cChhhhcCcccCeeeeecccCCCC---
Q 035895          136 IGNLTDLISIDLGGN-KLNGS----ISITLGKLQKLQFLSFRGNELEGS----IPNVLCHLAVLFQLDLRGNKLSGS---  203 (527)
Q Consensus       136 ~~~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---  203 (527)
                      +...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.|...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344445555555555 44321    122333445555555555555421    122333344555555555555422   


Q ss_pred             -CCccccCCccCceeeC--CCCCCCC
Q 035895          204 -IPTCFGNLTALRNLHL--DSNELTS  226 (527)
Q Consensus       204 -~p~~~~~l~~L~~L~L--~~N~l~~  226 (527)
                       +...+...++|++|+|  ++|.++.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCH
Confidence             2233444555666666  5566553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=6.8e-08  Score=91.51  Aligned_cols=104  Identities=25%  Similarity=0.359  Sum_probs=68.2

Q ss_pred             hcCCcCCcE--EEeecCccc---ccCcccccCCCCCCEEeccCccccc--ccChhhhcCcccCeeeeecccCCCCCCccc
Q 035895          136 IGNLTDLIS--IDLGGNKLN---GSISITLGKLQKLQFLSFRGNELEG--SIPNVLCHLAVLFQLDLRGNKLSGSIPTCF  208 (527)
Q Consensus       136 ~~~l~~L~~--L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  208 (527)
                      |...+.|..  ++++.|+..   +.++.....+++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            444445554  666777433   2223333467788888888888876  4456677888888888888888764  234


Q ss_pred             cCCc--cCceeeCCCCCCCC-Cc-------hhhhCCCCccEEE
Q 035895          209 GNLT--ALRNLHLDSNELTS-IP-------SILWNLKDILYLD  241 (527)
Q Consensus       209 ~~l~--~L~~L~L~~N~l~~-lp-------~~~~~l~~L~~l~  241 (527)
                      ..+.  +|++|+|++|.+.+ +|       ..+..+++|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4444  78888888888875 44       2355677888776

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.85  E-value=2.7e-05  Score=75.55  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             cceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCcc---ceeEEEEEeccC
Q 035895          390 NNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNE---DFRALVLEYTTN  436 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~---~~~~lv~ey~~~  436 (527)
                      .+.++.|.+..||++.    ..+++|+....                              ....   ...++||||++|
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G  100 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG  100 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence            4568999999999864    46788874210                              0011   134789999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG--------------------------------------------  472 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~--------------------------------------------  472 (527)
                      .++......   .++..++..++.++++.++.+|..                                            
T Consensus       101 ~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  177 (304)
T 3sg8_A          101 VPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFY  177 (304)
T ss_dssp             EECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             eECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHH
Confidence            888653321   245556667777777777777731                                            


Q ss_pred             -----------CCCCeEecCCCCCCeeeCC--CCcEEEeeccccccc
Q 035895          473 -----------YSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLL  506 (527)
Q Consensus       473 -----------~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~  506 (527)
                                 ....++|+|++|.||++++  ...+.+.||+.+..-
T Consensus       178 ~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          178 RDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             HHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                       1245899999999999997  456789999998753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.71  E-value=1.8e-05  Score=69.58  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             CCcEEEeecCcccccCcccccCCCCCCEEeccCcc-cccccChhhhcC----cccCeeeeeccc-CCCCCCccccCCccC
Q 035895          141 DLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE-LEGSIPNVLCHL----AVLFQLDLRGNK-LSGSIPTCFGNLTAL  214 (527)
Q Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L  214 (527)
                      .|++||++++.|+..--..+.++++|+.|+|++|. ++..--..+..+    ++|++|+|++|. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444443222334455555555555553 332212223332    246666666653 443222234556666


Q ss_pred             ceeeCCCCC
Q 035895          215 RNLHLDSNE  223 (527)
Q Consensus       215 ~~L~L~~N~  223 (527)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.64  E-value=0.00021  Score=69.27  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=26.9

Q ss_pred             CCCeEecCCCCCCeeeCC---CCc-EEEeeccccccc
Q 035895          474 STPIIHCDLKPHNKLLDD---NIV-AHLSDFGIAKLL  506 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~---~~~-~kl~Dfg~a~~~  506 (527)
                      ...++|+|++|.||+++.   ++. +.|.||+.+..-
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            456799999999999987   455 479999988753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=3e-05  Score=68.11  Aligned_cols=82  Identities=16%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             CCCEEEcccCCCCcccChhHhhccccccEEEcccCc-cccccchhhcCC----cCCcEEEeecCc-ccccCcccccCCCC
Q 035895           92 YLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCN-ISGGISEEIGNL----TDLISIDLGGNK-LNGSISITLGKLQK  165 (527)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~  165 (527)
                      .|+.||++++.++..--..+..+ ++|+.|+|++|. |+..--..+..+    ++|++|+|++|. |+..--..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46666666666554322233333 245555555553 332222223322    235555555542 44222223334444


Q ss_pred             CCEEeccCc
Q 035895          166 LQFLSFRGN  174 (527)
Q Consensus       166 L~~L~l~~N  174 (527)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555554444

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.56  E-value=0.00055  Score=64.83  Aligned_cols=119  Identities=18%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             hhhcCCccccceeccCCce-EEEEEEcc-CCcEEEEEEEee---------------------------ccCccceeEEEE
Q 035895          381 LRATDGFSANNLIGRGSFG-SVYKARLQ-DGMEFAIKVFHF---------------------------SCSNEDFRALVL  431 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g-~vy~~~~~-~~~~vavK~~~~---------------------------~~~~~~~~~lv~  431 (527)
                      .....+|+. +.+..|..| .||+.... ++..+.+|+-..                           .+...+..++||
T Consensus        21 ~~~l~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvm   99 (272)
T 4gkh_A           21 DADLYGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLT   99 (272)
T ss_dssp             HHHHTTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             hccccCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEE
Confidence            334556654 355666666 68988764 456788997431                           223456778999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc----------------------------------------
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF----------------------------------------  471 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~----------------------------------------  471 (527)
                      |+++|.++.+......     .....++.++++.++-||.                                        
T Consensus       100 e~l~G~~~~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGW  174 (272)
T ss_dssp             ECCCSEEHHHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTC
T ss_pred             EeeCCccccccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccch
Confidence            9999988776542210     0112233333333333331                                        


Q ss_pred             ---------------CCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          472 ---------------GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       472 ---------------~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                                     .....++|+|+.+.||++++++.+-|.||+.+..
T Consensus       175 ~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          175 PVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             CHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                           1122379999999999999877777999998865

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.27  E-value=0.00064  Score=66.68  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...+||+|+++.||+++.++.+.+.||+.+..
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            57899999999999998888999999998754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00049  Score=61.51  Aligned_cols=63  Identities=22%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             CCCCCEEEcccC-CCCcc----cChhHhhccccccEEEcccCccccc----cchhhcCCcCCcEEEeecCccc
Q 035895           90 CKYLKKLDISRN-PLDGF----LPRVVGNFSQSLEFIWMSDCNISGG----ISEEIGNLTDLISIDLGGNKLN  153 (527)
Q Consensus        90 l~~L~~L~Ls~N-~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~  153 (527)
                      -+.|++|+|++| .|...    +-+.+.. ...|+.|+|++|.|...    +.+.+..-+.|++|+|+.|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            345666666664 55421    1111111 12455555555555421    1222333344555555555554

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.97  E-value=0.0015  Score=64.54  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...+||+|+.+.||+++++..+.|.||+.+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            46789999999999999654578999998764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.80  E-value=0.003  Score=63.46  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...++|+|+.|.||+++.+ .+++.||..+..
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            5678999999999999866 489999987764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.78  E-value=0.0021  Score=53.53  Aligned_cols=36  Identities=28%  Similarity=0.286  Sum_probs=19.1

Q ss_pred             CCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcc
Q 035895          284 SLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL  319 (527)
Q Consensus       284 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  319 (527)
                      +|++|+|++|+|+...++.|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            345555555555544444555555555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.73  E-value=0.00054  Score=61.24  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             cccEEEcccC-cccc----ccchhhcCCcCCcEEEeecCcccccC----cccccCCCCCCEEeccCcccc
Q 035895          117 SLEFIWMSDC-NISG----GISEEIGNLTDLISIDLGGNKLNGSI----SITLGKLQKLQFLSFRGNELE  177 (527)
Q Consensus       117 ~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~  177 (527)
                      .|+.|+|++| .|..    .+.+++..-..|++|+|++|.|...-    ...+..-+.|+.|+|+.|.|.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            5666777664 5542    12334444555666666666665321    122233455666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0023  Score=53.28  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             EEEcccCCCC-cccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcc
Q 035895           95 KLDISRNPLD-GFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL  152 (527)
Q Consensus        95 ~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  152 (527)
                      .+|.+++.++ ..+|..   ++.+|+.|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 113322   233466666666666655555556666666666666654

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.07  E-value=0.013  Score=55.84  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             ccccceeccCCceEEEEEEccCCcEEEEEEE
Q 035895          387 FSANNLIGRGSFGSVYKARLQDGMEFAIKVF  417 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~  417 (527)
                      ....+.+|.|..+.||+.+..+|+.|.+|+.
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~   47 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKAL   47 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEEC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEe
Confidence            4556789999999999999999999999984

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.86  E-value=0.021  Score=55.11  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=68.1

Q ss_pred             ccceeccCCceEEEEEEccCCcEEEEEEEeec-----------------------------cCccceeEEEEEeccCCcH
Q 035895          389 ANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYTTNGSL  439 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~~~g~L  439 (527)
                      ..+.|+.|.+..+|+.... +..+++|+....                             +..++..++||||++|..+
T Consensus        40 ~~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLINDE-VQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKN  118 (312)
T ss_dssp             EEEEECCSSSSEEEEEESS-SCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCC
T ss_pred             eeEEeCCccceeeeEEEEC-CCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCC
Confidence            3467999999999999864 568889975321                             1123457899999998754


Q ss_pred             H--------H---HHHhcCC---------------------CCCHHHHH---HHHH----------------HHHHH-HH
Q 035895          440 E--------K---VLYSSNY---------------------ILDILQRL---NIMI----------------DVTSA-LE  467 (527)
Q Consensus       440 ~--------~---~l~~~~~---------------------~~~~~~~~---~i~~----------------~i~~~-l~  467 (527)
                      .        .   .++....                     .-+|....   ++..                .+.+. .+
T Consensus       119 ~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~  198 (312)
T 3jr1_A          119 KQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVAD  198 (312)
T ss_dssp             CTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            1        1   1222111                     01354321   1111                11111 12


Q ss_pred             HHh-cCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 035895          468 YLH-FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFG  501 (527)
Q Consensus       468 ylH-~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg  501 (527)
                      .+. +...+.+||+|+.+.|++++.++ +.|.||.
T Consensus       199 ~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          199 TLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            332 12357799999999999999887 8899984

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.74  E-value=0.033  Score=53.80  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             HHHHHHHHhc----CCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          462 VTSALEYLHF----GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       462 i~~~l~ylH~----~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      +...+++++.    .....+||+|+.+.||++++++.+.+.||+.+..
T Consensus       170 l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          170 IRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             HHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            3444555542    1245789999999999999876668999988753

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=95.66  E-value=0.061  Score=51.48  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...++|+|+.+.||+ ..++.+.+.||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            445899999999999 5567789999988764

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.22  E-value=0.22  Score=48.52  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...++|+|+.+.||++++++.+.+.||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            45689999999999999888899999988764

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=91.91  E-value=0.17  Score=50.70  Aligned_cols=29  Identities=28%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             eEecCCCCCCeee------CCCCcEEEeecccccc
Q 035895          477 IIHCDLKPHNKLL------DDNIVAHLSDFGIAKL  505 (527)
Q Consensus       477 iiHrdlk~~nill------~~~~~~kl~Dfg~a~~  505 (527)
                      ++|+|+.+.||++      +++..+.+.||-+|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4567899999988763

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=90.96  E-value=0.2  Score=50.44  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=27.9

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...++|+|++|.||+++.++ +++.||+.+..
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            78899999999999998776 99999988775

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=87.36  E-value=0.64  Score=44.86  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             CCCeEecCCCCCCeeeCCC----CcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDN----IVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~----~~~kl~Dfg~a~~  505 (527)
                      ...+||+|+.+.||+++.+    +.+.+.||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            5679999999999999874    6889999998865

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=83.45  E-value=1  Score=43.11  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=25.9

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...+||+|+++.||+++ + .+.+.||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            45689999999999999 4 899999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	527
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-30
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-29
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-27
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-27
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-25
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-25
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-25
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-25
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-24
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-24
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-24
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-24
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-24
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-24
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	8e-24
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-23
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-23
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-23
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-22
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-22
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-22
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-22
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-21
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-21
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-21
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	6e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-20
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-20
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-19
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-19
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	6e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-19
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-18
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	8e-18
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-17
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-17
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-17
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-16
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-16
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-15
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-15
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-15
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	8e-15
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-14
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	5e-13
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 1e-30
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFH------------------------------FS 420
             IG GSFG+VYK +     + A+K+ +                                
Sbjct: 14  QRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
            S     A+V ++    SL   L+      ++++ ++I       ++YLH      IIH 
Sbjct: 72  YSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA---KSIIHR 128

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           DLK +N  L +++   + DFG+A + +    S    Q    I +MAP
Sbjct: 129 DLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 4e-29
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 49/199 (24%)

Query: 375 FSYQELLRATDGFSAN---------NLIGRGSFGSVYKARL----QDGMEFAIKV----- 416
           F++++   A   F+            +IG G FG V    L    +  +  AIK      
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 417 -------------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILD 451
                                         +      ++ E+  NGSL+  L  ++    
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 452 ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           ++Q + ++  + + ++YL        +H DL   N L++ N+V  +SDFG+++ L  +  
Sbjct: 127 VIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183

Query: 512 SMTQTQTLAIIG---YMAP 527
             T T  L       + AP
Sbjct: 184 DPTYTSALGGKIPIRWTAP 202

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-27
 Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 37/184 (20%)

Query: 378 QELLRATDGFSANNL-IGRGSFGSVYKARLQ---DGMEFAIKVFHFSCSNEDFRA----- 428
           ++L    D     ++ +G G+FGSV +   +     ++ AIKV        D        
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 429 ------------------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS 464
                                   LV+E    G L K L      + +     ++  V+ 
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 120

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IG 523
            ++YL        +H DL   N LL +   A +SDFG++K L  +D   T        + 
Sbjct: 121 GMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 177

Query: 524 YMAP 527
           + AP
Sbjct: 178 WYAP 181

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 6e-27
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 32/165 (19%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFH---------------------------FSCSN 423
             +G G FG V+        + A+K                              ++   
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT 78

Query: 424 EDFRALVLEYTTNGSLEKVLYSSNYI-LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
           ++   ++ EY  NGSL   L + + I L I + L++   +   + ++        IH DL
Sbjct: 79  QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDL 135

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +  N L+ D +   ++DFG+A+L+  +++   +      I + AP
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIE-DNEYTAREGAKFPIKWTAP 179

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 35/174 (20%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV-------------------------- 416
            D +     +G G+FG VYKA+  +  +  A KV                          
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                 +   E+   +++E+   G+++ V+      L   Q   +      AL YLH   
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH--- 127

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              IIH DLK  N L   +    L+DFG++   T   Q            +MAP
Sbjct: 128 DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI--GTPYWMAP 179

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 38/192 (19%)

Query: 366 MQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKARLQD-GMEFAIKV-------- 416
           M P       +Y +        +  + +G G +G VY+   +   +  A+K         
Sbjct: 2   MDPS----SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV 57

Query: 417 --------------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSN-YILDILQR 455
                                   C+ E    ++ E+ T G+L   L   N   +  +  
Sbjct: 58  EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL 117

Query: 456 LNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           L +   ++SA+EYL        IH DL   N L+ +N +  ++DFG+++L+TG D     
Sbjct: 118 LYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAH 173

Query: 516 TQTLAIIGYMAP 527
                 I + AP
Sbjct: 174 AGAKFPIKWTAP 185

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-25
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 32/165 (19%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKV----------------------------FHFSCS 422
             +G G FG V   + +   + AIK+                             +  C+
Sbjct: 10  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT 69

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            +    ++ EY  NG L   L    +     Q L +  DV  A+EYL        +H DL
Sbjct: 70  KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDL 126

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              N L++D  V  +SDFG+++ +  +D+  +   +   + +  P
Sbjct: 127 AARNCLVNDQGVVKVSDFGLSRYVL-DDEYTSSVGSKFPVRWSPP 170

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 5e-25
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 38/176 (21%)

Query: 383 ATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV------------------------- 416
             D F   + +G G+ G V+K      G+  A K+                         
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                F+ +  ++   ++ +E+   GSL++VL  +   +       + I V   L YL  
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLRE 122

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                I+H D+KP N L++      L DFG++  L  +  + +   T     YM+P
Sbjct: 123 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI-DSMANSFVGT---RSYMSP 172

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 45/185 (24%), Positives = 62/185 (33%), Gaps = 42/185 (22%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA------------ 428
           RA D +     IG GS+G   K R   DG     K   +    E  +             
Sbjct: 2   RAED-YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL 60

Query: 429 ---------------------LVLEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTS 464
                                +V+EY   G L  V+         LD    L +M  +T 
Sbjct: 61  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTL 120

Query: 465 ALEYLH--FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAII 522
           AL+  H        ++H DLKP N  LD      L DFG+A++L  +             
Sbjct: 121 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVG--TP 178

Query: 523 GYMAP 527
            YM+P
Sbjct: 179 YYMSP 183

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 37/179 (20%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV------------------------ 416
           +  + F    ++G GSF +V  AR L    E+AIK+                        
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 417 --------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                    +F+  +++     L Y  NG L K +       D         ++ SALEY
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS-FDETCTRFYTAEIVSALEY 123

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LH      IIH DLKP N LL++++   ++DFG AK+L+ E +       +    Y++P
Sbjct: 124 LH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 32/171 (18%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-CSNEDFRA--------------- 428
           +       +G+G FG V+          AIK       S E F                 
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 76

Query: 429 -----------LVLEYTTNGSLEKVLYSSNYILDIL-QRLNIMIDVTSALEYLHFGYSTP 476
                      +V EY + GSL   L         L Q +++   + S + Y+       
Sbjct: 77  LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MN 133

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            +H DL+  N L+ +N+V  ++DFG+A+L+  +++   +      I + AP
Sbjct: 134 YVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIKWTAP 183

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 35/174 (20%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           + +     +G G++G V  A         A+K+                           
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              F+      + + L LEY + G L   +   +  +           + + + YLH   
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLH--- 120

Query: 474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              I H D+KP N LLD+     +SDFG+A +    ++     +    + Y+AP
Sbjct: 121 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 174

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (247), Expect = 5e-24
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 38/172 (22%)

Query: 390 NNLIGRGSFGSVYKARLQD---GMEFAIKVFHFSCSNEDFRA------------------ 428
           +  +G G+FG+V K   Q        A+K+     ++   +                   
Sbjct: 12  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 71

Query: 429 ------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP 476
                       LV+E    G L K L  + + +     + ++  V+  ++YL     + 
Sbjct: 72  RMIGICEAESWMLVMEMAELGPLNKYLQQNRH-VKDKNIIELVHQVSMGMKYLEE---SN 127

Query: 477 IIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
            +H DL   N LL     A +SDFG++K L  ++            + + AP
Sbjct: 128 FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAP 179

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 5e-24
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 43/177 (24%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFS---------------------- 420
              FS    IG GSFG+VY AR +++    AIK   +S                      
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 421 ----------CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH 470
                        E    LV+EY    + + +       L  ++   +       L YLH
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP-LQEVEIAAVTHGALQGLAYLH 132

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              S  +IH D+K  N LL +  +  L DFG A ++     + +   T     +MAP
Sbjct: 133 ---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA---PANSFVGTP---YWMAP 180

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  100 bits (250), Expect = 8e-24
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 38/168 (22%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSC 421
            +G G+FG V++      G  FA K                               H + 
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92

Query: 422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
            +++   ++ E+ + G L + +   +  +   + +  M  V   L ++H       +H D
Sbjct: 93  EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLD 149

Query: 482 LKPHNKLL--DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           LKP N +     +    L DFG+   L  +      T T     + AP
Sbjct: 150 LKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTA---EFAAP 194

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (247), Expect = 1e-23
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 62/195 (31%)

Query: 392 LIGRGSFGSVYKARLQD------GMEFAIKV----------------------------- 416
           ++G G+FG V  A           ++ A+K+                             
Sbjct: 44  VLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI 103

Query: 417 --FHFSCSNEDFRALVLEYTTNGSLEKVLYSSN----------------------YILDI 452
                +C+      L+ EY   G L   L S                         +L  
Sbjct: 104 VNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF 163

Query: 453 LQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS 512
              L     V   +E+L        +H DL   N L+    V  + DFG+A+ +  +   
Sbjct: 164 EDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY 220

Query: 513 MTQTQTLAIIGYMAP 527
           + +      + +MAP
Sbjct: 221 VVRGNARLPVKWMAP 235

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 2e-23
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 32/165 (19%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKV----------------------------FHFSCS 422
             IG G FG V+     +  + AIK                              +  C 
Sbjct: 11  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 70

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
            +    LV E+  +G L   L +   +      L + +DV   + YL       +IH DL
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDL 127

Query: 483 KPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              N L+ +N V  +SDFG+ + +  +  + +       + + +P
Sbjct: 128 AARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP-VKWASP 171

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 2e-23
 Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 38/166 (22%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
             IG+G FG V       G + A+K      + + F A                      
Sbjct: 13  QTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 71

Query: 429 ------LVLEYTTNGSLEKVLYSSNY-ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
                 +V EY   GSL   L S    +L     L   +DV  A+EYL        +H D
Sbjct: 72  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRD 128

Query: 482 LKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           L   N L+ ++ VA +SDFG+ K  +    +         + + AP
Sbjct: 129 LAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP-----VKWTAP 169

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 3e-23
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 39/177 (22%)

Query: 387 FSANNLIGRGSFGSVYKARLQDG-----MEFAIKV------------------------- 416
            +   +IG G FG VYK  L+       +  AIK                          
Sbjct: 9   VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                     S      ++ EY  NG+L+K L   +    +LQ + ++  + + ++YL  
Sbjct: 69  HNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA- 127

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL-TGEDQSMTQTQTLAIIGYMAP 527
             +   +H DL   N L++ N+V  +SDFG++++L    + + T +     I + AP
Sbjct: 128 --NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 182

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 6e-23
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 41/176 (23%)

Query: 385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKV--------------------------- 416
           + F     +G+G FG+VY AR  Q     A+KV                           
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                 +    +     L+LEY   G++ + L   +   D  +    + ++ +AL Y H 
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYCH- 123

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
             S  +IH D+KP N LL       ++DFG +       +  T   T   + Y+ P
Sbjct: 124 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS-SRRTTLCGT---LDYLPP 173

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 9e-23
 Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 43/175 (24%)

Query: 390 NNLIGRGSFGSVYKARL-QDGMEFAIK--------------------------------- 415
           +  IGRGSF +VYK    +  +E A                                   
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 73

Query: 416 --VFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
              +  +   +    LV E  T+G+L+  L     ++ I    +    +   L++LH   
Sbjct: 74  YDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT-R 131

Query: 474 STPIIHCDLKPHNKLLDD-NIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           + PIIH DLK  N  +        + D G+A L      +     T     +MAP
Sbjct: 132 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA-SFAKAVIGTP---EFMAP 182

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.5 bits (239), Expect = 1e-22
 Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 62/211 (29%)

Query: 376 SYQELLRATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVF------------ 417
               L    +       IG G+FG V++AR       +     A+K+             
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 418 ------------------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNY----------- 448
                                C+      L+ EY   G L + L S +            
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 449 ------------ILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH 496
                        L   ++L I   V + + YL        +H DL   N L+ +N+V  
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVK 180

Query: 497 LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           ++DFG+++ +   D           I +M P
Sbjct: 181 IADFGLSRNIYSADYYKADGNDAIPIRWMPP 211

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 1e-22
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 42/174 (24%)

Query: 393 IGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFR------------------------- 427
           IG+G FG V++ +   G E A+K+F        FR                         
Sbjct: 11  IGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKD 69

Query: 428 -------ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH-----FGYST 475
                   LV +Y  +GSL   L  + Y + +   + + +   S L +LH          
Sbjct: 70  NGTWTQLWLVSDYHEHGSLFDYL--NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP 127

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
            I H DLK  N L+  N    ++D G+A        ++       +    YMAP
Sbjct: 128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 181

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 96.7 bits (240), Expect = 2e-22
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 38/168 (22%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV-----------------------------FHFSC 421
            +G G+FG V++      G  F  K                               H + 
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95

Query: 422 SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCD 481
            ++    L+LE+ + G L   + + +Y +   + +N M      L+++H      I+H D
Sbjct: 96  EDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLD 152

Query: 482 LKPHNKLLDDNIVAH--LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +KP N + +    +   + DFG+A  L  ++     T T     + AP
Sbjct: 153 IKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTAT---AEFAAP 197

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 3e-22
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 40/184 (21%)

Query: 379 ELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------- 416
            +L+ T+ F    ++G G+FG+VYK   + +G +  I V                     
Sbjct: 4   RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 417 -------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVT 463
                            C     + L+ +    G L   +      +     LN  + + 
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 121

Query: 464 SALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIG 523
             + YL       ++H DL   N L+       ++DFG+AKLL  E++          I 
Sbjct: 122 KGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

Query: 524 YMAP 527
           +MA 
Sbjct: 179 WMAL 182

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 3e-22
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 57/191 (29%)

Query: 391 NLIGRGSFGSVYKARL------QDGMEFAIKV---------------------------- 416
             +G G+FG V +A           M  A+K+                            
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSS-----------------NYILDILQRL 456
                 +C+      ++ EY   G L   L                       LD+   L
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLL 148

Query: 457 NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT 516
           +    V   + +L    S   IH DL   N LL    +  + DFG+A+ +  +   + + 
Sbjct: 149 SFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 205

Query: 517 QTLAIIGYMAP 527
                + +MAP
Sbjct: 206 NARLPVKWMAP 216

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 2e-21
 Identities = 44/167 (26%), Positives = 64/167 (38%), Gaps = 37/167 (22%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHF-----------------------------S 420
             IG+G+ G+VY A  +  G E AI+  +                              S
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85

Query: 421 CSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
               D   +V+EY   GSL  V+  +    D  Q   +  +   ALE+LH   S  +IH 
Sbjct: 86  YLVGDELWVVMEYLAGGSLTDVVTETCM--DEGQIAAVCRECLQALEFLH---SNQVIHR 140

Query: 481 DLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           D+K  N LL  +    L+DFG    +T E    +         +MAP
Sbjct: 141 DIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG--TPYWMAP 185

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (228), Expect = 3e-21
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 55/192 (28%)

Query: 385 DGFSANNLIGRGSFGSVYKARLQDG---MEFAIKV------------------------- 416
           +     ++IG G+FG V KAR++     M+ AIK                          
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 417 ------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI---------------LDILQR 455
                    +C +  +  L +EY  +G+L   L  S  +               L   Q 
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 456 LNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           L+   DV   ++YL        IH DL   N L+ +N VA ++DFG+++      +    
Sbjct: 130 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 186

Query: 516 TQTLAIIGYMAP 527
                 + +MA 
Sbjct: 187 RLP---VRWMAI 195

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 4e-21
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 37/168 (22%)

Query: 392 LIGRGSFGSVYKARL----QDGMEFAIKVFH----------------------------- 418
            IG G FG V++          +  AIK                                
Sbjct: 14  CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKL 73

Query: 419 FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                E+   +++E  T G L   L    Y LD+   +     +++AL YL    S   +
Sbjct: 74  IGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFV 130

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           H D+   N L+  N    L DFG+++ +            L  I +MA
Sbjct: 131 HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLP-IKWMA 177

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 90.1 bits (223), Expect = 9e-21
 Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 47/183 (25%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           + +    ++GRG    V +        E+A+K+                           
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 417 ------------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTS 464
                          +     F  LV +    G L   L +    L   +   IM  +  
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL-TEKVTLSEKETRKIMRALLE 121

Query: 465 ALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
            +  LH      I+H DLKP N LLDD++   L+DFG +  L   ++      T     Y
Sbjct: 122 VICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGT---PSY 175

Query: 525 MAP 527
           +AP
Sbjct: 176 LAP 178

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 40/170 (23%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIK-----------------------------VFHFSC 421
           ++G G  G V +    +   +FA+K                             V+    
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLY 78

Query: 422 SNEDFRALVLEYTTNGSLEKVLYS-SNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHC 480
           +      +V+E    G L   +    +      +   IM  +  A++YLH   S  I H 
Sbjct: 79  AGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHR 135

Query: 481 DLKPHNKLLD---DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           D+KP N L      N +  L+DFG AK  T  +   T   T     Y+AP
Sbjct: 136 DVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYT---PYYVAP 182

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 91.2 bits (225), Expect = 2e-20
 Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 14/224 (6%)

Query: 113 NFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR 172
             +       +   +        +  LT+L S+    N+++    + +     L  LS  
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLN 227

Query: 173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILW 232
           GN+L+      L  L  L  LDL  N++S   P     LT L  L L +N++++I   L 
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LA 282

Query: 233 NLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH 292
            L  +  L+   N       S I NLK LT +    NN+    P  +  L  LQ L   +
Sbjct: 283 GLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 293 NRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
           N++     +S  +L ++  L   +N +S++ PL+ L ++  L +
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 56/227 (24%)

Query: 87  MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISID 146
           ++    L+ L  + N +    P        +L+ + ++   +       + +LT+L  +D
Sbjct: 193 LAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 147 LGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIP--------------------NVLCH 186
           L  N+++      L  L KL  L    N++    P                    + + +
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 187 LAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNL 246
           L  L  L L  N +S   P    +LT L+ L   +N+++ + S+                
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL---------------- 347

Query: 247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN 293
                     NL  +  +    N +    P  +  L  +  L L   
Sbjct: 348 ---------ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 16/222 (7%)

Query: 1   MWSEKLNNRQLDGGMTGDVCYRICTIDSQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRL 60
              +  +N+  D  +   +      I + N++  I    +  L+ L    ++ N  L  +
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQ-LKDI 234

Query: 61  SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEF 120
            ++    +L+D  L ++  ++S L+ +S    L +L +  N +    P      +     
Sbjct: 235 GTLASLTNLTDLDLANN--QISNLAPLSGLTKLTELKLGANQISNISP-----LAGLTAL 287

Query: 121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI 180
             +            I NL +L  + L  N ++    +    L KLQ L F  N++    
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD-- 343

Query: 181 PNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN 222
            + L +L  +  L    N++S   P    NLT +  L L+  
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 60/303 (19%), Positives = 102/303 (33%), Gaps = 43/303 (14%)

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLP---------RVVGNF 114
           V  L      + S       +  +     L +++ S N L    P          ++ N 
Sbjct: 46  VTTLQADRLGIKS-------IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 98

Query: 115 SQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN 174
             +      +  N++G               +L         S T+  +  L  L+    
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 175 ELEGSIPNVLCHLAVLFQLDLRGNKLS-GSIPTCFGNLTALRNLHLDSNELTSIPSILWN 233
              G+    L  LA L  L+      +  S  +    LT L +L   +N+++ I  +   
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GI 217

Query: 234 LKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHN 293
           L ++  L    N         + +L  LT +D + N +    P  + GL  L  L LG N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 294 RLQGSIP--------------------NSFDDLVSLESLDLSNNNLSEIIPLS-LEKLLY 332
           ++    P                    +   +L +L  L L  NN+S+I P+S L KL  
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 333

Query: 333 LNI 335
           L  
Sbjct: 334 LFF 336

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 6e-07
 Identities = 50/237 (21%), Positives = 76/237 (32%), Gaps = 27/237 (11%)

Query: 116 QSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNE 175
             +  +      I     + +  L +L  I+   N+L       L  L KL  +    N+
Sbjct: 44  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 176 LEGSIPNVLCHLAVLFQ----------------LDLRGNKLSGSIPTCFGNLTALRNLHL 219
           +    P                              R    S +I              L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 220 DSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTI 279
                 +    L NL  +  LD  SN       S +  L  L  +  + N +    P  I
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 280 QGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
               +L  LSL  N+L+     +   L +L  LDL+NN +S + PLS L KL  L +
Sbjct: 218 L--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
            L    +    + N+   +  +   L  +  L      ++ SI    + L +L  ++ SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSN 75

Query: 317 NNLSEIIPLS-LEKLLYLN 334
           N L++I PL  L KL+ + 
Sbjct: 76  NQLTDITPLKNLTKLVDIL 94

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 6e-20
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 40/175 (22%)

Query: 390 NNLIGRGSFGSVYKARLQD----GMEFAIKV----------------------------- 416
           N +IGRG FG VY   L D     +  A+K                              
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 417 --FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS 474
                   +E    +VL Y  +G L   + +  +   +   +   + V   +++L     
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS--- 148

Query: 475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
              +H DL   N +LD+     ++DFG+A+ +  ++      +T A   + +MA 
Sbjct: 149 KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMAL 203

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 8e-20
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 48/186 (25%)

Query: 387 FSANNLIGRGSFGSVYKARL------QDGMEFAIKVF----------------------- 417
            + +  +G+GSFG VY+         +     AIK                         
Sbjct: 22  ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFN 81

Query: 418 -------HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYI---------LDILQRLNIMID 461
                      S      +++E  T G L+  L S               + + + +  +
Sbjct: 82  CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 141

Query: 462 VTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI 521
           +   + YL+   +   +H DL   N ++ ++    + DFG+ + +   D      + L  
Sbjct: 142 IADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 198

Query: 522 IGYMAP 527
           + +M+P
Sbjct: 199 VRWMSP 204

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 9e-20
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 34/158 (21%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCS 422
            +GRG FG V++         +  K                              H S  
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFE 71

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
           + +   ++ E+ +   + + + +S + L+  + ++ +  V  AL++LH   S  I H D+
Sbjct: 72  SMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDI 128

Query: 483 KPHNKLLD--DNIVAHLSDFGIAKLLTGEDQSMTQTQT 518
           +P N +     +    + +FG A+ L   D        
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTA 166

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.3 bits (218), Expect = 1e-19
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 40/167 (23%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           + FS + +IGRG FG VY  R    G  +A+K                            
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 417 --------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                     ++    D  + +L+    G L   L S + +           ++   LE+
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHL-SQHGVFSEADMRFYAAEIILGLEH 122

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ 515
           +H   +  +++ DLKP N LLD++    +SD G+A   + +    + 
Sbjct: 123 MH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 166

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 1e-19
 Identities = 32/171 (18%), Positives = 48/171 (28%), Gaps = 39/171 (22%)

Query: 393 IGRGSFGSVYKARL----QDGMEFAIKVFH------------------------------ 418
           +G GSFG V +          +  A+K                                 
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75

Query: 419 -FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
            +         +V E    GSL   L        +       + V   + YL    S   
Sbjct: 76  LYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRF 132

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI-IGYMAP 527
           IH DL   N LL    +  + DFG+ + L   D      +   +   + AP
Sbjct: 133 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP 183

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.9 bits (214), Expect = 1e-19
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 37/168 (22%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRA---------------------- 428
             IG G++G VYKA+   G  FA+K       +E   +                      
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 429 ---------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIH 479
                    LV E+  +  L+K+L      L+ +   + ++ + + + Y H      ++H
Sbjct: 68  VIHTKKRLVLVFEHL-DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLH 123

Query: 480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            DLKP N L++      ++DFG+A+           T  +  + Y AP
Sbjct: 124 RDLKPQNLLINREGELKIADFGLARAF--GIPVRKYTHEIVTLWYRAP 169

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.2 bits (212), Expect = 3e-19
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 5/245 (2%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
              LD+  N +         N    L  + + +  IS         L  L  + L  N+L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLT 212
                     LQ+L+       ++  S+ N L  + V+  L     K SG     F  + 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMK 150

Query: 213 ALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLL 272
            L  + +    +T+IP        +  L    N       + +  L  L ++  S N++ 
Sbjct: 151 KLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 273 GDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLY 332
                ++     L+ L L +N+L   +P    D   ++ + L NNN+S I         Y
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 333 LNILL 337
                
Sbjct: 268 NTKKA 272

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 3e-18
 Identities = 53/286 (18%), Positives = 97/286 (33%), Gaps = 20/286 (6%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           L      L L +N +T             N K L  L +  N +    P         LE
Sbjct: 29  LPPDTALLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKISKISPGAFAPLV-KLE 82

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
            +++S   +     +    L +L   +    K+  S+   L ++  +  L     +  G 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGI 141

Query: 180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTS-IPSILWNLKDIL 238
                  +  L  + +    ++ +IP   G   +L  LHLD N++T    + L  L ++ 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
            L    N         + N   L  +  + N L   +P  +   K +Q + L +N +   
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 299 IPNSF------DDLVSLESLDLSNNNLS--EIIPLSLEKLLYLNIL 336
             N F          S   + L +N +   EI P +   +     +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 58/290 (20%), Positives = 95/290 (32%), Gaps = 26/290 (8%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
             NK+  I      NL  L    + NN +          L      L  S  +L  L   
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEK 97

Query: 88  SNCKYLKKLDISRNPLDGFLPRVVGNFSQ-SLEFIWMSDCNISGGISEEIGNLTDLISID 146
                 ++L +  N +      V    +Q  +  +  +    SG  +     +  L  I 
Sbjct: 98  MPKTL-QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156

Query: 147 LGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT 206
           +    +    +I  G    L  L   GN++       L  L  L +L L  N +S     
Sbjct: 157 IADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 207 CFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDF 266
              N   LR LHL++N+L  +P  L + K I  +   +N           N+  +   DF
Sbjct: 214 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-----------NISAIGSNDF 262

Query: 267 SRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS--IPNSFDDLVSLESLDL 314
                            S   +SL  N +Q     P++F  +    ++ L
Sbjct: 263 CPPGYNTK-------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLG 273
           LR +      L  +P  L    D   LD  +N           NLK L  +    N +  
Sbjct: 12  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 274 DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYL 333
             P     L  L+ L L  N+L+  +P      +  + L +  N ++++       L  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQM 126

Query: 334 NIL 336
            ++
Sbjct: 127 IVV 129

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 85.2 bits (210), Expect = 5e-19
 Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 42/182 (23%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNED----------------- 425
           +D +    ++G G    V+ AR L+   + A+KV     + +                  
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 426 -------------------FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSAL 466
                                 +V+EY    +L  ++++    +   + + ++ D   AL
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP-MTPKRAIEVIADACQAL 124

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA-IIGYM 525
            + H      IIH D+KP N ++       + DFGIA+ +     S+TQT  +     Y+
Sbjct: 125 NFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 181

Query: 526 AP 527
           +P
Sbjct: 182 SP 183

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 6e-19
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 56/196 (28%)

Query: 385 DGFSANNLIGRGSFGSVYKAR------LQDGMEFAIKVFHFSCSNEDFRA---------- 428
           D       +GRG+FG V +A              A+K+     ++ + RA          
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 429 ----------------------LVLEYTTNGSLEKVLYSSNY---------------ILD 451
                                 +++E+   G+L   L S                   L 
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 452 ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ 511
           +   +     V   +E+L    S   IH DL   N LL +  V  + DFG+A+ +  +  
Sbjct: 133 LEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 512 SMTQTQTLAIIGYMAP 527
            + +      + +MAP
Sbjct: 190 YVRKGDARLPLKWMAP 205

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 6e-19
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 41/176 (23%)

Query: 387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFH--------------------------- 418
           ++   +IG GSFG VY+A+L   G   AIK                              
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81

Query: 419 ----FSCSNEDFRALVLEYTTNGSLEKVLY--SSNYILDILQRLNIMIDVTSALEYLHFG 472
                   +E +  LVL+Y          +   +   L ++     M  +  +L Y+H  
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH-- 139

Query: 473 YSTPIIHCDLKP-HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            S  I H D+KP +  L  D  V  L DFG AK L   + +++    +    Y AP
Sbjct: 140 -SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS---YICSRYYRAP 191

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.1 bits (210), Expect = 6e-19
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 35/175 (20%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV-------------------------- 416
            D +   +++G G+F  V  A   +     AIK                           
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 417 ----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG 472
                     +     L+++  + G L   +    +         ++  V  A++YLH  
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF-YTERDASRLIFQVLDAVKYLHDL 126

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
                           LD++    +SDFG++K+        T   T    GY+AP
Sbjct: 127 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTP---GYVAP 178

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 37/178 (20%)

Query: 384 TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV-------------------------- 416
              ++  + IG G++G V  A    + +  AIK                           
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 417 ----FHFSCSNEDFRALVLEYTTNGSLEKVLYS--SNYILDILQRLNIMIDVTSALEYLH 470
                +          +   Y     +   LY       L        +  +   L+Y+H
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH 126

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT-GEDQSMTQTQTLAIIGYMAP 527
              S  ++H DLKP N LL+      + DFG+A++     D +   T+ +A   Y AP
Sbjct: 127 ---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 181

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 4e-18
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 57/191 (29%)

Query: 391 NLIGRGSFGSVYKARL--------QDGMEFAIKVF------------------------- 417
             +G G+FG V  A              + A+K+                          
Sbjct: 19  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 418 ------HFSCSNEDFRALVLEYTTNGSLEKVL---------------YSSNYILDILQRL 456
                   +C+ +    +++EY + G+L + L               ++    L     +
Sbjct: 79  KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 138

Query: 457 NIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT 516
           +    V   +EYL    S   IH DL   N L+ ++ V  ++DFG+A+ +   D     T
Sbjct: 139 SCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTT 195

Query: 517 QTLAIIGYMAP 527
                + +MAP
Sbjct: 196 NGRLPVKWMAP 206

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 5e-18
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 10/262 (3%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           + +    + L  N ++          S   C+ L  L +  N L           +   +
Sbjct: 30  IPAASQRIFLHGNRISHVPAA-----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
                +  +          L  L ++ L    L          L  LQ+L  + N L+  
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI-PSILWNLKDIL 238
             +    L  L  L L GN++S      F  L +L  L L  N +  + P    +L  ++
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 239 YLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS 298
            L  ++N         +  L+ L  +  + N  + D          LQ      + +  S
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCS 263

Query: 299 IPNSFDDLVSLESLDLSNNNLS 320
           +P     L   +   L+ N+L 
Sbjct: 264 LPQR---LAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 8e-16
 Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 2/244 (0%)

Query: 93  LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
            +++ +  N +                    S+       +   G             +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 153 NGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLT 212
                 T   L +L  L      L+   P +   LA L  L L+ N L       F +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 213 ALRNLHLDSNELTSIP-SILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL 271
            L +L L  N ++S+P      L  +  L    N      P    +L  L  +    NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 272 LGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLL 331
                  +  L++LQ+L L  N               L+    S++ +   +P  L    
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

Query: 332 YLNI 335
              +
Sbjct: 273 LKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 6/248 (2%)

Query: 28  SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSM 87
             N++  + + +      L +  + +N +    ++    L+L +    S   +L  +   
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 88  --SNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI 145
                  L  L +        L   +     +L+++++ D  +     +   +L +L  +
Sbjct: 100 TFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP 205
            L GN+++         L  L  L    N +    P+    L  L  L L  N LS    
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 206 TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID 265
                L AL+ L L+ N              +      S+     LP ++    +     
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---R 275

Query: 266 FSRNNLLG 273
            + N+L G
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 2/221 (0%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
           L  V      + + I++    IS   +       +L  + L  N L    +     L  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 167 QFLSFRGNELEGSI-PNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
           + L    N    S+ P     L  L  L L    L    P  F  L AL+ L+L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 226 SI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKS 284
           ++      +L ++ +L    N            L  L R+   +N +    P   + L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 285 LQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
           L  L L  N L      +   L +L+ L L++N        
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 49/207 (23%), Positives = 72/207 (34%), Gaps = 24/207 (11%)

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
            C   G  +  +G       I L GN+++   + +    + L  L    N L        
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 185 CHLAVLFQLDLRGNKLSGSI-PTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFW 243
             LA+L QLDL  N    S+ P  F  L  L  LHLD   L  +   L+     L   + 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSF 303
            +                       N L      T + L +L  L L  NR+      +F
Sbjct: 137 QD-----------------------NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 304 DDLVSLESLDLSNNNLSEIIPLSLEKL 330
             L SL+ L L  N ++ + P +   L
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDL 200

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 5/154 (3%)

Query: 185 CHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIP-SILWNLKDILYLDFW 243
           C+             L  ++P      +  + + L  N ++ +P +     +++  L   
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDI-PTTIQGLKSLQFLSLGHNRLQGSIPNS 302
           SN+      +    L +L ++D S N  L  + P T  GL  L  L L    LQ   P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 303 FDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
           F  L +L+ L L +N L  +   +   L  L  L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 8e-18
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA--------------- 428
           + F     IG G++G VYKAR    G   A+K        E   +               
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 429 ----------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG 472
                           LV E+      + +  S+   + +    + +  +   L + H  
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH-- 119

Query: 473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            S  ++H DLKP N L++      L+DFG+A+      ++ T       + Y AP
Sbjct: 120 -SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV--TLWYRAP 171

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 1e-17
 Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 41/172 (23%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------- 416
           + +G G F +VYKAR        AIK                                  
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 417 -FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYST 475
               +  ++   +LV ++     LE ++  ++ +L        M+     LEYLH     
Sbjct: 64  GLLDAFGHKSNISLVFDFM-ETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QH 119

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
            I+H DLKP+N LLD+N V  L+DFG+AK       +   T  +    Y AP
Sbjct: 120 WILHRDLKPNNLLLDENGVLKLADFGLAKSF--GSPNRAYTHQVVTRWYRAP 169

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 1e-17
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 40/177 (22%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           + F  + ++G+GSFG V+ A   +    FAIK                            
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 417 ------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH 470
                    +   ++    V+EY   G L   + S +   D+ +      ++   L++LH
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHK-FDLSRATFYAAEIILGLQFLH 120

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
              S  I++ DLK  N LLD +    ++DFG+ K     D             Y+AP
Sbjct: 121 ---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFC--GTPDYIAP 172

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 42/170 (24%), Positives = 62/170 (36%), Gaps = 42/170 (24%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------------F 417
             +G GSFG V+  R   +G  +A+KV                                 
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69

Query: 418 HFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPI 477
             +  +     ++++Y   G L   L   +             +V  ALEYLH   S  I
Sbjct: 70  WGTFQDAQQIFMIMDYIEGGELFS-LLRKSQRFPNPVAKFYAAEVCLALEYLH---SKDI 125

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           I+ DLKP N LLD N    ++DFG AK +     ++          Y+AP
Sbjct: 126 IYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCG-----TPDYIAP 170

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 8e-17
 Identities = 35/175 (20%), Positives = 49/175 (28%), Gaps = 46/175 (26%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV---------------------------------- 416
           L+G G FGSVY    + D +  AIK                                   
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 417 ---FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGY 473
                      D   L+LE            +    L      +    V  A+ + H   
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH--- 127

Query: 474 STPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +  ++H D+K  N L+D +     L DFG   LL         T       Y  P
Sbjct: 128 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPP 178

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 77.9 bits (191), Expect = 2e-16
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 43/175 (24%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV----------------------------FHFSCS 422
            IG GSFG +++   L +  + AIK                              ++   
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQ 71

Query: 423 NEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDL 482
                 LV++     SLE +L        +         + + ++ +H      +++ D+
Sbjct: 72  EGLHNVLVIDL-LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDI 127

Query: 483 KPHNKLLDDNIVAH-----LSDFGIAKLL--TGEDQSMTQTQTLAIIG---YMAP 527
           KP N L+      +     + DFG+ K        Q +   +   + G   YM+ 
Sbjct: 128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI 182

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 4e-16
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 41/184 (22%)

Query: 381 LRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV----------------------- 416
           LR  + +     IG GSFG +Y    +  G E AIK+                       
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGG 62

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                  +  +  D+  +V+E     SLE +    +    +   L +   + S +EY+H 
Sbjct: 63  VGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH- 120

Query: 472 GYSTPIIHCDLKPHN---KLLDDNIVAHLSDFGIAKLLTGED-----QSMTQTQTLAIIG 523
             S   IH D+KP N    L     + ++ DFG+AK                        
Sbjct: 121 --SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTAR 178

Query: 524 YMAP 527
           Y + 
Sbjct: 179 YASI 182

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 4e-16
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 47/187 (25%)

Query: 382 RATDGFSANNLIGRGSFGSVYKAR--LQDGMEFAIKVFHFSCSNEDFRA----------- 428
           RA   +     IG G++G V+KAR     G   A+K        E               
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 429 ----------------------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMI 460
                                       LV E+        +       +      ++M 
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 461 DVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLA 520
            +   L++LH   S  ++H DLKP N L+  +    L+DFG+A++ + +    +   TL 
Sbjct: 124 QLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTL- 179

Query: 521 IIGYMAP 527
              Y AP
Sbjct: 180 --WYRAP 184

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.0 bits (186), Expect = 9e-16
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 41/197 (20%)

Query: 362 NVSNMQPQASRRRFSYQELLRATDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKVFH-- 418
           +V+  +P+      S+       D +     +GRG +  V++A  + +  +  +K+    
Sbjct: 12  DVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV 71

Query: 419 ---------------------------FSCSNEDFRALVLEYTTNGSLEKVLYSSNYILD 451
                                               ALV E+  N   +++  +    L 
Sbjct: 72  KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT----LT 127

Query: 452 ILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGED 510
                  M ++  AL+Y H   S  I+H D+KPHN ++D ++    L D+G+A+      
Sbjct: 128 DYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 184

Query: 511 QSMTQTQTLAIIGYMAP 527
           +   +  +     +  P
Sbjct: 185 EYNVRVASR---YFKGP 198

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 9e-16
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 5/257 (1%)

Query: 85  SSMSNCKYLKKLDISRNPLDGF--LPRVVGNFSQSLEFIWMSDC-NISGGISEEIGNLTD 141
            + +    +  LD+S   L     +P  + N    L F+++    N+ G I   I  LT 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS 201
           L  + +    ++G+I   L +++ L  L F  N L G++P  +  L  L  +   GN++S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 202 GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL 261
           G+IP  +G+ + L      S    +           L     S   +    S +      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 262 TRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE 321
           T+      N L      +   K+L  L L +NR+ G++P     L  L SL++S NNL  
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 322 IIPLSLEKLLYLNILLI 338
            IP     L   ++   
Sbjct: 283 EIP-QGGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 119 EFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG 178
             + + +  I G + + +  L  L S+++  N L G I    G LQ+    ++  N+   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 179 SIPNVLC 185
             P   C
Sbjct: 306 GSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSN--LFVGPL 251
           DLR N++ G++P     L  L +L++  N L        NL+      + +N  L   PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 252 PS 253
           P+
Sbjct: 310 PA 311

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (185), Expect = 2e-15
 Identities = 43/210 (20%), Positives = 68/210 (32%), Gaps = 46/210 (21%)

Query: 355 KRATKLPNVSNMQPQASRRRFSYQELLRAT----DGFSANNLIGRGSFGSVYKAR-LQDG 409
           K+ ++  +V     +A        E         D F     +G GSFG V   +  + G
Sbjct: 7   KKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESG 66

Query: 410 MEFAIKV--------------------------------FHFSCSNEDFRALVLEYTTNG 437
             +A+K+                                  FS  +     +V+EY   G
Sbjct: 67  NHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG 126

Query: 438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHL 497
            +   L                  +    EYLH   S  +I+ DLKP N L+D      +
Sbjct: 127 EMFSHLRRIGR-FSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQV 182

Query: 498 SDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           +DFG AK + G   ++           +AP
Sbjct: 183 TDFGFAKRVKGRTWTLCG-----TPEALAP 207

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-15
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 37/162 (22%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           + F    L+G+G+FG V   R    G  +A+K+                           
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 417 -----FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHF 471
                  ++    D    V+EY   G L   L S   +    +      ++ SALEYLH 
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHL-SRERVFTEERARFYGAEIVSALEYLH- 122

Query: 472 GYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM 513
             S  +++ D+K  N +LD +    ++DFG+ K    +  +M
Sbjct: 123 --SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 71.7 bits (175), Expect = 3e-15
 Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 39/149 (26%)

Query: 391 NLIGRGSFGSVYKARLQDGMEFAIKVFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYIL 450
            L+G G   +V+    +   E  +K      ++        +Y         + S+    
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 451 DILQRLN-----------------------------------IMIDVTSALEYLHFGYST 475
             LQ+L                                    ++  +   +   +     
Sbjct: 66  RALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY---HR 122

Query: 476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAK 504
            I+H DL  +N L+ +  +  + DF  + 
Sbjct: 123 GIVHGDLSQYNVLVSEEGI-WIIDFPQSV 150

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 4e-15
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 46/179 (25%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA--------------------- 428
             IG+G+FG V+KAR  + G + A+K        E F                       
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75

Query: 429 ------------------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLH 470
                             LV ++  +     +         + +   +M  +   L  L+
Sbjct: 76  EICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQML---LNGLY 131

Query: 471 FGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAI--IGYMAP 527
           + +   I+H D+K  N L+  + V  L+DFG+A+  +    S     T  +  + Y  P
Sbjct: 132 YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPP 190

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 8e-15
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 38/169 (22%)

Query: 391 NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRA--------------------- 428
             IG G++G+V+KA+  +     A+K       +E   +                     
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 429 ----------LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPII 478
                     LV E+      +     +  +       + +  +   L + H      ++
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPE-IVKSFLFQLLKGLGFCHS---RNVL 123

Query: 479 HCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           H DLKP N L++ N    L++FG+A+      +    +  +  + Y  P
Sbjct: 124 HRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY--SAEVVTLWYRPP 170

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-14
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 43/180 (23%)

Query: 385 DGFSANNLIGRGSFGSVYKARL----QDGMEFAIKV------------------------ 416
           + F    ++G G++G V+  R       G  +A+KV                        
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 417 ----------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSAL 466
                      H++   E    L+L+Y   G L   L          +    + ++  AL
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIVLAL 142

Query: 467 EYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           E+LH      II+ D+K  N LLD N    L+DFG++K    ++           I YMA
Sbjct: 143 EHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFC-GTIEYMA 198

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 47/183 (25%)

Query: 385 DGFSANNLIGRGSFGSVYKAR-LQDGMEFAIKV--------------------------- 416
           D +     +G G F  V K R    G+++A K                            
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 417 --------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEY 468
                    H    N+    L+LE    G L     +    L   +    +  + + + Y
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELFDF-LAEKESLTEEEATEFLKQILNGVYY 128

Query: 469 LHFGYSTPIIHCDLKPHNKLLDDN----IVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGY 524
           LH   S  I H DLKP N +L D         + DFG+A  +   ++      T     +
Sbjct: 129 LH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGT---PEF 182

Query: 525 MAP 527
           +AP
Sbjct: 183 VAP 185

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 6e-14
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 53/198 (26%)

Query: 372 RRRFSYQELLRATDGFSAN----NLIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDF 426
           R  F  QE+ +      A       +G G++G+V  A   + G + AIK  +    +E F
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 427 RA-------------------------------------LVLEYTTNGSLEKVLYSSNYI 449
                                                  LV+ +      +      +  
Sbjct: 61  AKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGK---LMKHEK 117

Query: 450 LDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE 509
           L   +   ++  +   L Y+H   +  IIH DLKP N  ++++    + DFG+A+    E
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE 174

Query: 510 DQSMTQTQTLAIIGYMAP 527
                 T  +    Y AP
Sbjct: 175 -----MTGYVVTRWYRAP 187

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 5e-13
 Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 40/170 (23%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKVFHFSCSNEDFRALVLE------------------ 432
            IG G+ G V  A         AIK       N+                          
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 433 -YTTNGSLEKVL-------YSSNYILDILQR-------LNIMIDVTSALEYLHFGYSTPI 477
            +T   +LE+              +  ++Q          ++  +   +++LH   S  I
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGI 140

Query: 478 IHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP 527
           IH DLKP N ++  +    + DFG+A+       S   T  +    Y AP
Sbjct: 141 IHRDLKPSNIVVKSDCTLKILDFGLART---AGTSFMMTPYVVTRYYRAP 187

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 47/181 (25%)

Query: 392 LIGRGSFGSVYKAR-LQDGMEFAIKV---------------------------------- 416
            +G G F +V+ A+ + +    A+K+                                  
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 79

Query: 417 ---------FHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALE 467
                    F+    N     +V E      L  +    +  + ++    I   +   L+
Sbjct: 80  NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLD 139

Query: 468 YLHFGYSTPIIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMA 526
           Y+H      IIH D+KP N L++  +   +L    IA L          T ++    Y +
Sbjct: 140 YMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRS 197

Query: 527 P 527
           P
Sbjct: 198 P 198

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-11
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 49/193 (25%)

Query: 375 FSYQELLRA----TDGFSANNLIGRGSFGSVYKAR-LQDGMEFAIK-------------- 415
           F  QEL +      + +   + +G G++GSV  A   + G+  A+K              
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 416 ---------------------VFHFSCSNEDFRALVLEYTTNGSLEKVLYSSNYILDILQ 454
                                VF  + S E+F  + L     G+    +      L    
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK-LTDDH 122

Query: 455 RLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT 514
              ++  +   L+Y+H   S  IIH DLKP N  ++++    + DFG+A+    E     
Sbjct: 123 VQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV 179

Query: 515 QTQTLAIIGYMAP 527
            T       Y AP
Sbjct: 180 AT-----RWYRAP 187

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 7e-11
 Identities = 40/180 (22%), Positives = 57/180 (31%), Gaps = 3/180 (1%)

Query: 140 TDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNK 199
            D   + L  N L      TL    +L  L+    EL     +    L VL  LDL  N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88

Query: 200 LSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLK 259
           L                    +   +     L  L ++  L    N      P  +    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 260 VLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNL 319
            L ++  + NNL       + GL++L  L L  N L  +IP  F     L    L  N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 7/203 (3%)

Query: 135 EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLD 194
           E+  +   + ++     L  ++   L K      L    N L       L     L QL+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK 254
           L   +   +     G L  L  L L  N+L S+P +   L  +  LD   N         
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL 314
           +  L  L  +    N L    P  +     L+ LSL +N L        + L +L++L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 315 SNNNLSEIIP--LSLEKLLYLNI 335
             N+L  I         L +  +
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFL 202

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 31/211 (14%), Positives = 59/211 (27%), Gaps = 7/211 (3%)

Query: 86  SMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISI 145
            +S      +++  +  L      +  +  +    + +S+  +       +   T L  +
Sbjct: 5   EVSKVASHLEVNCDKRNLT----ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 146 DLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP 205
           +L   +L          L  L  L    N+L+          A+           S  + 
Sbjct: 61  NLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 206 TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID 265
              G           +   T  P +L     +  L   +N         +  L+ L  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 266 FSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ 296
              N+L   IP    G   L F  L  N   
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 9/188 (4%)

Query: 60  LSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLE 119
           L      L LS+N L + +      +++     L +L++ R  L         + +  + 
Sbjct: 29  LPKDTTILHLSENLLYTFSL-----ATLMPYTRLTQLNLDRAELTKLQV----DGTLPVL 79

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
                  N    +      L  L  +D+  N+L       L  L +LQ L  +GNEL+  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILY 239
            P +L     L +L L  N L+         L  L  L L  N L +IP   +    + +
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199

Query: 240 LDFWSNLF 247
                N +
Sbjct: 200 AFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 171 FRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI 230
           +  N     I ++      L +L++  NKL   +P        L  L    N L  +P +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPEL 322

Query: 231 LWNLKDILYLDFWSNLF--VGPLPSKIGNLKV 260
             NLK    L    N       +P  + +L++
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 232 WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLG 291
             L ++    ++ N     + S       L  ++ S N L+ ++P        L+ L   
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIAS 312

Query: 292 HNRLQGSIPNSFDDLVSLESLDLSNNNLSEI--IPLSLEKLLYLN 334
            N L   +P       +L+ L +  N L E   IP S+E  L +N
Sbjct: 313 FNHLA-EVPEL---PQNLKQLHVEYNPLREFPDIPESVED-LRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 195 LRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK 254
              N  S  I +      +L  L++ +N+L  +P++   L+    L    N     +P  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAE-VPEL 322

Query: 255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF 287
             NLK L       N L    P   + ++ L+ 
Sbjct: 323 PQNLKQL---HVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 266 FSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
           +  N    +I +      SL+ L++ +N+L   +P        LE L  S N+L+E +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VPE 321

Query: 326 SLEKLLYLNI 335
             + L  L++
Sbjct: 322 LPQNLKQLHV 331

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 33/122 (27%)

Query: 120 FIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGS 179
                    S  I         L  +++  NKL                      EL   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL---------------------IELPAL 302

Query: 180 IPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILY 239
            P        L +L    N L+  +P    N   L+ LH++ N L   P I  +++D L 
Sbjct: 303 PPR-------LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLREFPDIPESVED-LR 350

Query: 240 LD 241
           ++
Sbjct: 351 MN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 185 CHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLK 235
           C      +L+L    LS S+P    +L    +L    N LT +P +  +LK
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTELPELPQSLK 81

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 7e-08
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD 274
           R LHL   +LT +   L  L  + +LD   N      P+ +  L+ L  +  S N    +
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LE 56

Query: 275 IPTTIQGLKSLQFLSLGHNRLQG-SIPNSFDDLVSLESLDLSNNNLSEI--IPLSLEKLL 331
               +  L  LQ L L +NRLQ  +          L  L+L  N+L +   I   L ++L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 6/118 (5%)

Query: 193 LDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLP 252
           L L    L+  +      L  + +L L  N L ++P  L  L+ +  L    N       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 253 SKIGNLKVLTRIDFSRNNLLG-DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSL 309
                      +    N L        +     L  L+L  N L        + L  +
Sbjct: 61  VANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 8e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 123 MSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPN 182
           ++  +++  +   +  L  +  +DL  N+L       L  L+ L+ L    N LE     
Sbjct: 5   LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61

Query: 183 VLCHLAVLFQLDLRGNKL-SGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDIL 238
                  L +L L  N+L   +      +   L  L+L  N L     I   L ++L
Sbjct: 62  ANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 67  LSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDC 126
           L L+   LT        L  +     +  LD+S N L    P      +       +   
Sbjct: 3   LHLAHKDLTV-------LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQAS 51

Query: 127 NISGGISEEIGNLTDLISIDLGGNKLNGSISI-TLGKLQKLQFLSFRGNELEGSIPNVLC 185
           + +    + + NL  L  + L  N+L  S +I  L    +L  L+ +GN L      +  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQE 110

Query: 186 HLAVLF 191
            LA + 
Sbjct: 111 RLAEML 116

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 22/214 (10%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
            L + I I  G + +  ++  T   L  +  LS  G  +  +I   + +L  L  L+L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 198 NKLSG--------SIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG 249
           N+++          I     +   L+N+   +   +     L + +            + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 250 PLPSKIGNLKVLTRIDFSRNNLLGDIP-------TTIQGLKSLQFLSLGHNRLQGSIPNS 302
            L   +  +  ++ +    N     I        T +  L  L  L    N++    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 303 FDDLVSLESLDLSNNNLSEIIPLS-LEKLLYLNI 335
              L +L  + L NN +S++ PL+    L  + +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 121 IWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSI 180
           I     N++  +++   +L  + ++   G  +  +I   +  L  L  L  + N++    
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA 79

Query: 181 PNVLCHLAVLFQLDLRGNKLSGSIP---------------TCFGNLTALRNLHLDSNELT 225
           P          +L     K   +I                T    L  L NL +   +L 
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSL 285
            I +I                      + + NL  LT +    N +    P  +  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 286 QFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
             + L +N++    P    +  +L  + L+N
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 23/192 (11%)

Query: 64  VDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPL------DGFLPRVVGNFSQS 117
           +  LS     +T+       +  +     L  L++  N +                 S +
Sbjct: 43  ITTLSAFGTGVTT-------IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE 177
                 +   +    + ++ +        L G      + + L ++  +  L+   N   
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 178 G-------SIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSI 230
                   S    L +L+ L  L    NK+S   P    +L  L  +HL +N+++ +   
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212

Query: 231 LWNLKDILYLDF 242
           L N  ++  +  
Sbjct: 213 LANTSNLFIVTL 224

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 14/199 (7%)

Query: 138 NLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG 197
              + I  +L    +  ++  T  +L  +  +    ++++      + +L  + +L L G
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGN 257
           NKL+   P        L NL            +             S        S I  
Sbjct: 78  NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 258 LKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNN 317
           L  L +++            T+    +        +     I      L  L++L LS N
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188

Query: 318 NLSEIIPLS-LEKLLYLNI 335
           ++S++  L+ L+ L  L +
Sbjct: 189 HISDLRALAGLKNLDVLEL 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 9/118 (7%)

Query: 232 WNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL----LGDIPTTIQGLKSLQF 287
                I                      VL  +  +  ++       +  T+    SL+ 
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401

Query: 288 LSLGHNRLQGSIPNSFDDLV-----SLESLDLSNNNLSEIIPLSLEKLLYLNILLIVV 340
           L L +N L  +      + V      LE L L +   SE +   L+ L      L V+
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 261 LTRIDFSRNNLL-GDIPTTIQGLKSLQFLSLGHNRLQG----SIPNSFDDLVSLESLDLS 315
           +  +D     L        +  L+  Q + L    L       I ++     +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 316 NNNLSEIIPLSLEKLLYLNILLIVVVIL 343
           +N L ++    + + L      I  + L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 141 DLISIDLGGNKLNGS-ISITLGKLQKLQFLSFRGNELEG----SIPNVLCHLAVLFQLDL 195
           D+ S+D+   +L+ +  +  L  LQ+ Q +      L       I + L     L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 196 RGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWN 233
           R N+L      C        +  +    L +       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 93  LKKLDISRNPL-DGFLPRVVGNFSQSLEFIWMSDCNISG----GISEEIGNLTDLISIDL 147
           ++ LDI    L D     ++    Q  + + + DC ++      IS  +     L  ++L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 148 GGNKLNGSISITLGKL-----QKLQFLSFRGN 174
             N+L       + +       K+Q LS +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 236 DILYLDFWSN-LFVGPLPSKIGNLKVLTRIDFSRNNL----LGDIPTTIQGLKSLQFLSL 290
           DI  LD     L        +  L+    +      L      DI + ++   +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 291 GHNRLQGSIPNSFDDLVSLESLDLSNNNLS 320
             N L     +     +   S  +   +L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 116 QSLEFIWMSDCNISG----GISEEIGNLTDLISIDLGGNKLNGSISITLGKLQK-----L 166
             L  +W++DC++S      ++  +     L  +DL  N L  +  + L +  +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 167 QFLSFRGNELEGSIPNVLCHL 187
           + L          + + L  L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 280 QGLKSLQFLSLGHNRLQG----SIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
           Q    L+ L L    +      S+  +     SL  LDLSNN L +   L L + +    
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 336 LLIVVVIL 343
            L+  ++L
Sbjct: 426 CLLEQLVL 433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 17/255 (6%)

Query: 94  KKLDISRNPL-DGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKL 152
           + LD++   L      R++     +          +   ++E   +   +  +DL  + +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFR---CPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 58

Query: 153 NG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG--NKLSGSIPTCFG 209
              ++   L +  KLQ LS  G  L   I N L   + L +L+L G       ++ T   
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 210 NLTALRNLHLDSNELTSIPSILWNLKDILY-------LDFWSNLFVGPLPSKIGNLKVLT 262
           + + L  L+L      +   +   +  +           +  NL    L + +     L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 263 RIDFSRNNLLGD-IPTTIQGLKSLQFLSLGH-NRLQGSIPNSFDDLVSLESLDLSNNNLS 320
            +D S + +L +        L  LQ LSL     +         ++ +L++L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 321 EIIPLSLEKLLYLNI 335
             + L  E L +L I
Sbjct: 239 GTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 30/282 (10%), Positives = 82/282 (29%), Gaps = 25/282 (8%)

Query: 56  VLGRL-SSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNF 114
           V GRL S  V       +++     E            ++ +D+S + ++      + + 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR------VQHMDLSNSVIEVSTLHGILSQ 69

Query: 115 SQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN 174
              L+ + +    +S  I   +   ++L+ ++L G       ++        +      +
Sbjct: 70  CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 129

Query: 175 ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNL 234
                    +          +    LSG       +  +       +             
Sbjct: 130 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL------------ 177

Query: 235 KDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD-IPTTIQGLKSLQFLSLGHN 293
             +      S +       +   L  L  +  SR   +       +  + +L+ L +   
Sbjct: 178 --VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 294 RLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNI 335
              G++    +   +L  L ++ ++ + I   ++       I
Sbjct: 236 VPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 4/166 (2%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEI-GNLTDLISIDLGGNKLNGSISITLGKLQK 165
           L  +  +       + ++D  +    S+ + G L  L+ ++L  N+L G           
Sbjct: 20  LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 166 LQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELT 225
           +Q L    N+++     +   L  L  L+L  N++S  +P  F +L +L +L+L SN   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 226 SIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNL 271
               + W  + +              PSK+ ++++    D   +  
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK---DLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 4/164 (2%)

Query: 140 TDLISIDLGGNKLNGSISITL-GKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGN 198
                + L  N+L    S  L G+L  L  L  + N+L G  PN     + + +L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 199 KLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNL 258
           K+       F  L  L+ L+L  N+++ +    +   + L     ++             
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 259 KVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS 302
           + L +   +        P+    ++ +Q   L H+  + S  NS
Sbjct: 149 EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGD 274
             +      L  IP  +      L L+    L         G L  L +++  RN L G 
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 275 IPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLN 334
            P   +G   +Q L LG N+++      F  L  L++L+L +N +S ++P S E L  L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 194 DLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPS 253
           +L+  ++   +              LD   L S P  L      + L+  S++    L  
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAAT-LRI 59

Query: 254 KIGNLKVLTRIDFSRNNLLG--DIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLES 311
              N+  L  ++ S N L    D+ + +Q   +L+ L+L  N L+          + LE 
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 312 LDLSNNNLSEIIP 324
           L L  N+LS+   
Sbjct: 120 LWLDGNSLSDTFR 132

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 16/198 (8%)

Query: 138 NLTDLISIDLGGNKLNGSISIT-LGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR 196
            L + +   LG   +  ++S T L ++  LQ        ++G     + +L  L Q++  
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 70

Query: 197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIG 256
            N+L+    T   NLT L ++ +++N++  I  +           F + +        + 
Sbjct: 71  NNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSN 316
           NL  L             I              L  +  Q +      +L +LE LD+S+
Sbjct: 129 NLNRLELSSN-------TISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 181

Query: 317 NNLSEIIPLS-LEKLLYL 333
           N +S+I  L+ L  L  L
Sbjct: 182 NKVSDISVLAKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 23/224 (10%), Positives = 49/224 (21%), Gaps = 7/224 (3%)

Query: 107 LPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL 166
           +  +  +  ++   +      +            DL  I++  N +   I   +      
Sbjct: 20  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS-----GSIPTCFGNLTALRNLHLDS 221
                          N      +     L  +                    L      +
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 222 NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQG 281
                  S +    + + L    N             ++        NNL         G
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 282 LKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPL 325
                 L +   R+        ++L  L +   S  NL ++  L
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 24/217 (11%), Positives = 44/217 (20%), Gaps = 5/217 (2%)

Query: 125 DCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVL 184
            C  S           + I +     KL             L+ +    N++   I   +
Sbjct: 14  LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 185 CHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWS 244
                           +                +L  +          +    L      
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 245 NLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLG----HNRLQGSIP 300
                 + +   N  V    +     L  +    I                 N     +P
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 301 -NSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL 336
            + F        LD+S   +  +    LE L  L   
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 270 NLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEK 329
            L+         ++  + L L   ++   I N    L   +++D S+N + ++    L +
Sbjct: 6   ELIEQAAQYTNAVR-DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLR 63

Query: 330 LLYLNIL 336
            L   ++
Sbjct: 64  RLKTLLV 70

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 6/136 (4%)

Query: 190 LFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVG 249
             +LDLRG K+   I      L     +    NE+  +      L+ +  L   +N    
Sbjct: 20  DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICR 77

Query: 250 PLPSKIGNLKVLTRIDFSRNNLLG-DIPTTIQGLKSLQFLSLGH---NRLQGSIPNSFDD 305
                   L  LT +  + N+L+       +  LKSL +L +        +         
Sbjct: 78  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137

Query: 306 LVSLESLDLSNNNLSE 321
           +  +  LD     L E
Sbjct: 138 VPQVRVLDFQKVKLKE 153

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 208 FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFS 267
           + N    R L L   ++  I ++   L     +DF  N            L+ L  +  +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 71

Query: 268 RNNLLGDIPTTIQGLKSLQFLSLGHNRL 295
            N +        Q L  L  L L +N L
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSL 99

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 184 LCHLAVLFQLDLRGNKLSGSIPTC-----FGNLTALRNLHLDSNELTSIPSILWNLKDIL 238
                 L  L L+ N++               +  L  L L+ N  +    ++  ++++ 
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 328

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 9/151 (5%)

Query: 193 LDLRGNKLSGSIP------TCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNL 246
            +    +L G IP           L A ++L L +N +  I S L  ++++  L    NL
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNL 81

Query: 247 FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDL 306
                   +  +       +   N +  +    + +         +        +    L
Sbjct: 82  I--KKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 307 VSLESLDLSNNNLSEIIPLSLEKLLYLNILL 337
             LE L L+ N L      +     Y   ++
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	527
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.96
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.96
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.95
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.95
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.95
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.95
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.95
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.95
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.95
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.95
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.95
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.95
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.95
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.95
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.94
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.94
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.94
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.94
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.94
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.94
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.94
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.94
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.94
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.94
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.94
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.94
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.93
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.93
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.93
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.93
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.93
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.93
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.92
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.92
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.92
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.92
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.92
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.91
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.91
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.91
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.91
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.9
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.9
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.9
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.89
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.89
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.88
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.42
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.42
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	94.61
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.59
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	88.25

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.6e-31  Score=258.97  Aligned_cols=251  Identities=27%  Similarity=0.461  Sum_probs=196.9

Q ss_pred             ceEEcccccccCCCCCCcccccCCCCCCCCEEEccc-CCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCc
Q 035895           65 DELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISR-NPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLI  143 (527)
Q Consensus        65 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  143 (527)
                      +.|+|++|.+++.   .++++.+.++++|++|||++ |+++|.+|..+..+. +|++|+|++|++.+..+..+..+..|+
T Consensus        53 ~~L~L~~~~l~g~---~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          53 NNLDLSGLNLPKP---YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             EEEEEECCCCSSC---EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEECCCCCCCCC---CCCChHHhcCcccccccccccccccccccccccccc-ccchhhhccccccccccccccchhhhc
Confidence            3444555544431   11224577888888888886 788888888888875 788888888888888888888888888


Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCccc-CeeeeecccCCCCCCccccCCccCceeeCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVL-FQLDLRGNKLSGSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      .+++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..+ .++++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            88888888888888888888888888888888888888888877775 778888888888888888777544 6888887


Q ss_pred             CCCC-CchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCC
Q 035895          223 ELTS-IPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPN  301 (527)
Q Consensus       223 ~l~~-lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  301 (527)
                      .... +|..+..++.++.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            7765 56667778888888888888876654 577788888888888888888888888888888888888888888874


Q ss_pred             CCCCCCCCCEEeCCCCc-cccc
Q 035895          302 SFDDLVSLESLDLSNNN-LSEI  322 (527)
Q Consensus       302 ~~~~l~~L~~L~ls~N~-l~~~  322 (527)
                       +..+++|+.+++++|+ +.|.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             5778888888888886 5553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.8e-31  Score=257.74  Aligned_cols=250  Identities=26%  Similarity=0.422  Sum_probs=222.5

Q ss_pred             chhccc-CCCceee--cCchhhhcCCCCCEEEccc-cccccccccccceEEcccccccCCCCCCcccccCCCCCCCCEEE
Q 035895           22 RICTID-SQNKLVG--IVSITIFNLSTLKVFDVDN-NYVLGRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLD   97 (527)
Q Consensus        22 ~~~~~~-s~N~l~~--~~~~~~~~l~~L~~L~Ls~-N~~~~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~   97 (527)
                      |+..+| +.|.++|  .+|..+.+|++|++|||++ |.+.|.+|                       ..+.++++|++||
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-----------------------~~i~~L~~L~~L~  107 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-----------------------PAIAKLTQLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-----------------------GGGGGCTTCSEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-----------------------cccccccccchhh
Confidence            577777 7777776  3677888888888888875 66665544                       2467889999999


Q ss_pred             cccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCC-CEEeccCccc
Q 035895           98 ISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL-QFLSFRGNEL  176 (527)
Q Consensus        98 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l  176 (527)
                      |++|++.+..+..+.... .|+.+++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+..+.++ +.+++++|++
T Consensus       108 Ls~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hccccccccccccccchh-hhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            999999998888887765 79999999999999999999999999999999999999999999888886 8899999999


Q ss_pred             ccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCcccc
Q 035895          177 EGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIG  256 (527)
Q Consensus       177 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~  256 (527)
                      ++..|..+..+..+ .++++++.+.+.+|..+..+++|+.+++++|.++..++.+..++.|+.|++++|++++.+|..++
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHh
Confidence            99999998887654 79999999999999999999999999999999998877888899999999999999999999999


Q ss_pred             CCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccc-ee
Q 035895          257 NLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL-QG  297 (527)
Q Consensus       257 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~  297 (527)
                      ++++|++|+|++|+++|.+|. ++.+++|+.+++++|+. .|
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            999999999999999998884 68899999999999984 44

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-30  Score=247.92  Aligned_cols=140  Identities=24%  Similarity=0.389  Sum_probs=118.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++...                              +.+++..++|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            46799999999999999999986 57899999997531                              223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ||+||+|.+++... ..+++.++..++.|++.||+|||   +++||||||||+|||+++++.+||+|||+|+.+......
T Consensus        84 y~~gg~L~~~l~~~-~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~  159 (271)
T d1nvra_          84 YCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE  159 (271)
T ss_dssp             CCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred             ccCCCcHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccCCcc
Confidence            99999999998643 46889999999999999999999   999999999999999999999999999999987544333


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ...+..+||+.||||
T Consensus       160 ~~~~~~~GT~~Y~AP  174 (271)
T d1nvra_         160 RLLNKMCGTLPYVAP  174 (271)
T ss_dssp             CCBCCCCSCGGGSCT
T ss_pred             ccccceeeCcCccCH
Confidence            333456799999999

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-30  Score=249.66  Aligned_cols=140  Identities=28%  Similarity=0.475  Sum_probs=113.3

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec------------------------------cCccceeEEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~------------------------------~~~~~~~~lv~e  432 (527)
                      ..++|++.+.||+|+||+||+|+++.  .||||+++..                              +..++..++|||
T Consensus         6 ~~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~E   83 (276)
T d1uwha_           6 PDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQ   83 (276)
T ss_dssp             CTTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEE
T ss_pred             ccccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEe
Confidence            35679999999999999999998754  6999997531                              112345689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ||++|+|.+++...+..+++.++..|+.|||+||+|||   +++||||||||+|||++.++.+||+|||+|+........
T Consensus        84 y~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~  160 (276)
T d1uwha_          84 WCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGS  160 (276)
T ss_dssp             CCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-------
T ss_pred             cCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCc
Confidence            99999999999877677899999999999999999999   899999999999999999999999999999887543333


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ...+...||+.||||
T Consensus       161 ~~~~~~~gt~~y~AP  175 (276)
T d1uwha_         161 HQFEQLSGSILWMAP  175 (276)
T ss_dssp             -----CCCCGGGCCH
T ss_pred             ccccccccCcccCCH
Confidence            333456789999998

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=242.93  Aligned_cols=139  Identities=32%  Similarity=0.513  Sum_probs=115.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv~  431 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++..                                .+.+++..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5799999999999999999986 5789999999742                                123456778999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |||+||+|.+++... ..+++.++..++.|++.||+|+|   +++||||||||+||++++++.+||+|||+|+.+.....
T Consensus        88 Ey~~gg~L~~~~~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~  163 (288)
T d1uu3a_          88 SYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  163 (288)
T ss_dssp             CCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             EccCCCCHHHhhhcc-CCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecccCCc
Confidence            999999999988754 35788899999999999999999   99999999999999999999999999999998764433


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                      .......+||+.||||
T Consensus       164 ~~~~~~~~GT~~Y~AP  179 (288)
T d1uu3a_         164 QARANSFVGTAQYVSP  179 (288)
T ss_dssp             ------CCCCGGGCCH
T ss_pred             ccccccccCCccccCc
Confidence            3333446799999998

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=241.13  Aligned_cols=140  Identities=26%  Similarity=0.405  Sum_probs=111.1

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||+||+|++.+++.||||++..                            .|..++..++|||||+
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            357899999999999999999998889999999742                            2344567789999999


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccce
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQ  515 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~  515 (527)
                      +|+|.+++......+++..+..|+.|||.||+|+|   +++|+||||||+|||+++++.+||+|||+|+....... ...
T Consensus        84 ~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~-~~~  159 (263)
T d1sm2a_          84 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSS  159 (263)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC--------------
T ss_pred             CCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCc-eee
Confidence            99999999877777899999999999999999999   99999999999999999999999999999998754332 222


Q ss_pred             eccccccccccC
Q 035895          516 TQTLAIIGYMAP  527 (527)
Q Consensus       516 ~~~~~t~~y~aP  527 (527)
                      ....||+.||||
T Consensus       160 ~~~~gt~~y~aP  171 (263)
T d1sm2a_         160 TGTKFPVKWASP  171 (263)
T ss_dssp             -----CTTSCCH
T ss_pred             cceecCcccCCh
Confidence            345688999998

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-29  Score=237.03  Aligned_cols=136  Identities=29%  Similarity=0.462  Sum_probs=117.1

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+++.||||++..                                .+.+++..++|
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            46799999999999999999987 4689999999742                                12345677899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||++|+|.+++...+ .+++.++..++.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+......
T Consensus        85 mEy~~~g~L~~~l~~~~-~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~  160 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR  160 (263)
T ss_dssp             EECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC
T ss_pred             EeecCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecCCCc
Confidence            99999999999997543 5788899999999999999999   9999999999999999999999999999998765332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                          .....||+.||||
T Consensus       161 ----~~~~~Gt~~Y~AP  173 (263)
T d2j4za1         161 ----RTTLCGTLDYLPP  173 (263)
T ss_dssp             ----CEETTEEGGGCCH
T ss_pred             ----ccccCCCCcccCH
Confidence                2345799999998

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-29  Score=242.24  Aligned_cols=141  Identities=23%  Similarity=0.426  Sum_probs=118.0

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEeec---------------------------cCccceeEEEEEecc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS---------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~lv~ey~~  435 (527)
                      ..++|++.+.||+|+||+||+|++++++.||||+++..                           +..++..++|||||+
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~   90 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYME   90 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCC
Confidence            34678999999999999999999988899999998531                           112345689999999


Q ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|+|.+++.... ..+++.++..|+.||++||+|||   +++|+||||||+|||+++++.+||+|||+|+.+.... ...
T Consensus        91 ~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~-~~~  166 (272)
T d1qpca_          91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTA  166 (272)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-EEC
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCc-ccc
Confidence            999999875432 35899999999999999999999   8999999999999999999999999999999875432 222


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .+...||++||||
T Consensus       167 ~~~~~gt~~y~AP  179 (272)
T d1qpca_         167 REGAKFPIKWTAP  179 (272)
T ss_dssp             CTTCCCCTTTSCH
T ss_pred             ccccCCcccccCh
Confidence            3345688999998

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-28  Score=238.49  Aligned_cols=136  Identities=32%  Similarity=0.444  Sum_probs=116.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                             +..++..++|||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            3599999999999999999985 57999999997531                             22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +||+|.+++.+  ..++..++..++.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+.+.....  .
T Consensus       100 ~gg~L~~~~~~--~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--~  172 (293)
T d1yhwa1         100 AGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--K  172 (293)
T ss_dssp             TTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--C
T ss_pred             CCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccccc--c
Confidence            99999998765  35888899999999999999999   99999999999999999999999999999998754332  2


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      ....+||+.||||
T Consensus       173 ~~~~~gt~~Y~aP  185 (293)
T d1yhwa1         173 RSTMVGTPYWMAP  185 (293)
T ss_dssp             BCCCCSCGGGCCH
T ss_pred             ccccccCCCccCh
Confidence            2345799999998

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-29  Score=243.03  Aligned_cols=145  Identities=24%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             HhhhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEeec--------------------------------c
Q 035895          380 LLRATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHFS--------------------------------C  421 (527)
Q Consensus       380 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~~--------------------------------~  421 (527)
                      ++...++|++.+.||+|+||+||+|+..      +++.||||+++..                                .
T Consensus         8 wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~   87 (299)
T d1ywna1           8 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT   87 (299)
T ss_dssp             HBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeec
Confidence            3333467999999999999999999853      3578999997421                                1


Q ss_pred             CccceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCC
Q 035895          422 SNEDFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHN  486 (527)
Q Consensus       422 ~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~n  486 (527)
                      ..++..++|||||++|+|.+++....               ..+++.++..++.||++||+|||   +++||||||||+|
T Consensus        88 ~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~N  164 (299)
T d1ywna1          88 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARN  164 (299)
T ss_dssp             STTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGG
T ss_pred             cCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccc
Confidence            22345689999999999999997532               24788899999999999999999   9999999999999


Q ss_pred             eeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          487 KLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       487 ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+++++.+||+|||+|+...........+...||+.||||
T Consensus       165 ILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP  205 (299)
T d1ywna1         165 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  205 (299)
T ss_dssp             EEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCH
T ss_pred             eeECCCCcEEEccCcchhhccccccccccCceeeCccccch
Confidence            99999999999999999976544333333446789999998

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.5e-29  Score=242.67  Aligned_cols=143  Identities=25%  Similarity=0.440  Sum_probs=120.0

Q ss_pred             hhhcCCccccceeccCCceEEEEEEcc-CCcEEEEEEEee----------------------------ccCccceeEEEE
Q 035895          381 LRATDGFSANNLIGRGSFGSVYKARLQ-DGMEFAIKVFHF----------------------------SCSNEDFRALVL  431 (527)
Q Consensus       381 ~~~~~~~~~~~~lg~G~~g~vy~~~~~-~~~~vavK~~~~----------------------------~~~~~~~~~lv~  431 (527)
                      +...++|++.+.||+|+||+||+|+.. +++.||||+++.                            .+..++..++||
T Consensus        13 ei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (287)
T d1opja_          13 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   92 (287)
T ss_dssp             BCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEe
Confidence            334567899999999999999999875 689999999742                            234556778999


Q ss_pred             EeccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||++|+|.+++... ...+++..+..|+.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+......
T Consensus        93 E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~  169 (287)
T d1opja_          93 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  169 (287)
T ss_dssp             ECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSS
T ss_pred             ecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCCC
Confidence            999999999998754 456899999999999999999999   8999999999999999999999999999999875432


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                       ....+...||+.||||
T Consensus       170 -~~~~~~~~g~~~y~aP  185 (287)
T d1opja_         170 -YTAHAGAKFPIKWTAP  185 (287)
T ss_dssp             -SEEETTEEECGGGCCH
T ss_pred             -ceeeccccccccccCh
Confidence             2233345578899998

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=240.96  Aligned_cols=138  Identities=28%  Similarity=0.425  Sum_probs=117.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++..                                .+.+++..++|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            56799999999999999999986 5799999999852                                12345577899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||+||+|.+++...+ .++...+..++.|++.||+|+|   +++||||||||+|||++++|.+||+|||+|+......
T Consensus        84 ~ey~~gg~L~~~~~~~~-~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~  159 (337)
T d1o6la_          84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred             eeccCCCchhhhhhccc-CCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccCC
Confidence            99999999999987654 5788888899999999999999   9999999999999999999999999999999764332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .  .....+||++||||
T Consensus       160 ~--~~~~~~GT~~Y~aP  174 (337)
T d1o6la_         160 A--TMKTFCGTPEYLAP  174 (337)
T ss_dssp             C--CBCCCEECGGGCCG
T ss_pred             c--ccccceeCHHHhhh
Confidence            2  23346799999999

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-29  Score=239.57  Aligned_cols=138  Identities=28%  Similarity=0.354  Sum_probs=117.2

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------cCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------CSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||+||+|+. .+++.||||++...                             +..++..++|||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            4689999999999999999986 57899999998531                             22345678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      ++|+|.+++.+.+..+++.++..++.|++.||+|||   +++||||||||+|||++.++.+||+|||+|+......  ..
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--~~  166 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QR  166 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH--HH
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCCc--cc
Confidence            999999998776667899999999999999999999   9999999999999999999999999999998754221  11


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .....||+.||||
T Consensus       167 ~~~~~Gt~~y~AP  179 (288)
T d2jfla1         167 RDSFIGTPYWMAP  179 (288)
T ss_dssp             HTCCCSCCTTCCH
T ss_pred             ccccccccccCCH
Confidence            2245689999998

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-28  Score=240.46  Aligned_cols=141  Identities=24%  Similarity=0.436  Sum_probs=115.6

Q ss_pred             cCCccccceeccCCceEEEEEEccC------CcEEEEEEEee-------------------------------ccCccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD------GMEFAIKVFHF-------------------------------SCSNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~------~~~vavK~~~~-------------------------------~~~~~~~  426 (527)
                      .++|++.++||+|+||+||+|+...      ...||+|++..                               .+..++.
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            3578999999999999999998642      23699998632                               2334566


Q ss_pred             eEEEEEeccCCcHHHHHHhcC----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCC
Q 035895          427 RALVLEYTTNGSLEKVLYSSN----------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKP  484 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~----------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~  484 (527)
                      .++|||||++|+|.+++....                      ..+++..+..|+.||+.||+|||   +++||||||||
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp  192 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAA  192 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSG
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCch
Confidence            789999999999999997543                      23788899999999999999999   99999999999


Q ss_pred             CCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          485 HNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       485 ~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +||+++.++.+||+|||+|+...............||+.||||
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aP  235 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  235 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             hccccccCCeEEEeeccccccccCCCceeeeccccCCCccCCh
Confidence            9999999999999999999987544433333345689999998

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-29  Score=236.33  Aligned_cols=141  Identities=29%  Similarity=0.436  Sum_probs=103.8

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c--CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C--SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~--~~~~~~~lv  430 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..                               +  ..++..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            6799999999999999999986 57899999997431                               1  112456899


Q ss_pred             EEeccCCcHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhcC--CCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          431 LEYTTNGSLEKVLYS---SNYILDILQRLNIMIDVTSALEYLHFG--YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~ylH~~--~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ||||++|+|.+++.+   .+..+++..+..++.|++.||+|||..  ...+||||||||+|||++.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            999999999999864   245689999999999999999999931  124599999999999999999999999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.....  ......||++||||
T Consensus       164 ~~~~~~--~~~~~~gt~~Y~AP  183 (269)
T d2java1         164 LNHDTS--FAKAFVGTPYYMSP  183 (269)
T ss_dssp             C-------------CCCSCCCH
T ss_pred             cccCCC--ccccCCCCcccCCH
Confidence            754322  22346789999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.2e-26  Score=224.44  Aligned_cols=260  Identities=19%  Similarity=0.264  Sum_probs=192.9

Q ss_pred             cccceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcC
Q 035895           62 SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTD  141 (527)
Q Consensus        62 ~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  141 (527)
                      ..++.|+|++|+|+.+++.     +|.++++|++|++++|.+....|..|..+. .|+.|++++|+++..+..   ....
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~-----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n~l~~l~~~---~~~~  101 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEK---MPKT  101 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCSBCCSS---CCTT
T ss_pred             CCCCEEECcCCcCCCcChh-----HhhccccccccccccccccccchhhhhCCC-ccCEecccCCccCcCccc---hhhh
Confidence            3456666666666665542     467788888888888888877777777664 688888888888754432   2356


Q ss_pred             CcEEEeecCcccccCcccccCCCCCCEEeccCcccc--cccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeC
Q 035895          142 LISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELE--GSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHL  219 (527)
Q Consensus       142 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  219 (527)
                      ++.|++.+|.+.+..+..+.....+..++...|...  ...+..|..+++|+.+++++|.++. +|..+  +++|+.|++
T Consensus       102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l  178 (305)
T d1xkua_         102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHL  178 (305)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEEC
T ss_pred             hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEEC
Confidence            788888888888777777777788888888777543  3345667788888888888888874 34332  567888888


Q ss_pred             CCCCCCCC-chhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceee
Q 035895          220 DSNELTSI-PSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGS  298 (527)
Q Consensus       220 ~~N~l~~l-p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  298 (527)
                      ++|..+.. +..+..++.++.|++++|.+.+..+..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+..
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            88888774 556777788888888888888888888888889999999999887 5677888899999999999988855


Q ss_pred             cCCCC------CCCCCCCEEeCCCCccc--ccCccchhhhccCC
Q 035895          299 IPNSF------DDLVSLESLDLSNNNLS--EIIPLSLEKLLYLN  334 (527)
Q Consensus       299 ~p~~~------~~l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~  334 (527)
                      ....|      ..+.+|+.|++++|++.  .+.|..|..+....
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             ChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            44343      45678889999999875  45666666555443

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-29  Score=243.95  Aligned_cols=137  Identities=27%  Similarity=0.414  Sum_probs=115.4

Q ss_pred             hcCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCccceeEEEE
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNEDFRALVL  431 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~~~~~lv~  431 (527)
                      ..++|++.+.||+|+||+||+|+. .+|+.||+|+++..                              +..++..++||
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            356799999999999999999996 57899999997531                              23455678999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYS-TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+||+|.+++.+.+ .+++..+..++.|++.||+|||   + ++||||||||+|||+++++++||+|||+|+.+....
T Consensus        84 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qil~aL~yLH---~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  159 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  159 (322)
T ss_dssp             ECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT
T ss_pred             EcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc
Confidence            9999999999997654 5788889999999999999999   6 489999999999999999999999999999764321


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                          .+..+||++||||
T Consensus       160 ----~~~~~GT~~Y~AP  172 (322)
T d1s9ja_         160 ----ANSFVGTRSYMSP  172 (322)
T ss_dssp             ----C---CCSSCCCCH
T ss_pred             ----cccccCCccccCc
Confidence                2345799999998

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.2e-28  Score=230.11  Aligned_cols=139  Identities=26%  Similarity=0.425  Sum_probs=121.1

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEeccC
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTTN  436 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~~  436 (527)
                      ++|++.+.||+|+||+||+|+.++++.||||+++.                            .+..++..++||||+++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~   83 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN   83 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCC
Confidence            67999999999999999999999899999999753                            23445677899999999


Q ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccee
Q 035895          437 GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQT  516 (527)
Q Consensus       437 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  516 (527)
                      |+|..++......+++..+..++.|+++||+|||   +++|+||||||+||++++++.+||+|||+|+.+..... ...+
T Consensus        84 g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~  159 (258)
T d1k2pa_          84 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSV  159 (258)
T ss_dssp             EEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC-CCCC
T ss_pred             CcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCc-eeec
Confidence            9999998877777889999999999999999999   89999999999999999999999999999987754332 2333


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...+|+.||||
T Consensus       160 ~~~~t~~y~aP  170 (258)
T d1k2pa_         160 GSKFPVRWSPP  170 (258)
T ss_dssp             CSCCCGGGCCH
T ss_pred             ccCCCCCcCCc
Confidence            45689999998

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4e-28  Score=241.76  Aligned_cols=136  Identities=29%  Similarity=0.466  Sum_probs=116.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------------ccCcccee
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------------SCSNEDFR  427 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------------~~~~~~~~  427 (527)
                      .++|++.++||+|+||.||+|+. .+|+.||||++..                                   .+..++..
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            57899999999999999999986 5799999999742                                   12234567


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++|||||+||+|.+++... ..+++.++..++.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.+.
T Consensus        83 ~ivmE~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~  158 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFS  158 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEECS
T ss_pred             EEEEEecCCCcHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeeecC
Confidence            8999999999999999764 35688888999999999999999   9999999999999999999999999999999775


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...    .....||+.||||
T Consensus       159 ~~~----~~~~~GT~~y~AP  174 (364)
T d1omwa3         159 KKK----PHASVGTHGYMAP  174 (364)
T ss_dssp             SSC----CCSCCSCGGGCCH
T ss_pred             CCc----ccccccccccchh
Confidence            432    2235689999998

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.4e-28  Score=237.14  Aligned_cols=140  Identities=25%  Similarity=0.469  Sum_probs=104.9

Q ss_pred             CCccccceeccCCceEEEEEEcc-CC---cEEEEEEEee------------------------------ccCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DG---MEFAIKVFHF------------------------------SCSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~---~~vavK~~~~------------------------------~~~~~~~~~lv  430 (527)
                      +.|++.+.||+|+||+||+|+.+ ++   ..||||++..                              .+..++..++|
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            45778899999999999999874 23   3589998632                              23455677899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||++|+|.+++......+++.++..++.|||+||+|||   +++||||||||+|||++.++.+||+|||+|+.+....
T Consensus       106 ~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~  182 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT  182 (299)
T ss_dssp             EECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEccCCC
Confidence            9999999999998876677899999999999999999999   8999999999999999999999999999999875432


Q ss_pred             Ccc---ceeccccccccccC
Q 035895          511 QSM---TQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~---~~~~~~~t~~y~aP  527 (527)
                      ...   ......+|+.||||
T Consensus       183 ~~~~~~~~~~~~~t~~y~aP  202 (299)
T d1jpaa_         183 SDPTYTSALGGKIPIRWTAP  202 (299)
T ss_dssp             -------------CGGGSCH
T ss_pred             CcceeeecccccCCccccCH
Confidence            221   12234578899998

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.9e-28  Score=235.45  Aligned_cols=135  Identities=33%  Similarity=0.441  Sum_probs=115.9

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.                                .+..++..++|
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            46799999999999999999996 5799999999852                                12345677899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||+||+|..++... ..++......++.||+.||+|+|   +++||||||||+|||++.++.+||+|||+|+......
T Consensus        83 mE~~~gg~l~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~  158 (316)
T d1fota_          83 MDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT  158 (316)
T ss_dssp             ECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB
T ss_pred             eeecCCcccccccccc-ccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEecccc
Confidence            9999999999988754 45677788889999999999999   9999999999999999999999999999999875322


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                           +..+||+.||||
T Consensus       159 -----~~~~Gt~~Y~AP  170 (316)
T d1fota_         159 -----YTLCGTPDYIAP  170 (316)
T ss_dssp             -----CCCCSCTTTCCH
T ss_pred             -----ccccCcccccCH
Confidence                 235799999998

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-28  Score=233.05  Aligned_cols=140  Identities=26%  Similarity=0.441  Sum_probs=115.1

Q ss_pred             CCccccce-eccCCceEEEEEEcc---CCcEEEEEEEeec-----------------------------cCccceeEEEE
Q 035895          385 DGFSANNL-IGRGSFGSVYKARLQ---DGMEFAIKVFHFS-----------------------------CSNEDFRALVL  431 (527)
Q Consensus       385 ~~~~~~~~-lg~G~~g~vy~~~~~---~~~~vavK~~~~~-----------------------------~~~~~~~~lv~  431 (527)
                      ++|.+.+. ||+|+||+||+|..+   ++..||||+++..                             +...+..++||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvm   87 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   87 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEE
Confidence            45677775 999999999999753   4568999997421                             11234568999


Q ss_pred             EeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 035895          432 EYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       432 ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |||++|+|.+++...+..+++.++..++.||++||+|||   +++||||||||+||+++.++.+||+|||+|+.+.....
T Consensus        88 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  164 (285)
T d1u59a_          88 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  164 (285)
T ss_dssp             ECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhccccccc
Confidence            999999999998776677899999999999999999999   99999999999999999999999999999998754432


Q ss_pred             c-cceeccccccccccC
Q 035895          512 S-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~-~~~~~~~~t~~y~aP  527 (527)
                      . .......||+.||||
T Consensus       165 ~~~~~~~~~gt~~y~aP  181 (285)
T d1u59a_         165 YYTARSAGKWPLKWYAP  181 (285)
T ss_dssp             EECCCCSSCCCGGGCCH
T ss_pred             ccccccccccCccccCh
Confidence            2 222345688999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5.5e-26  Score=228.44  Aligned_cols=294  Identities=26%  Similarity=0.339  Sum_probs=210.3

Q ss_pred             cchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcccccCCCCCCCCE
Q 035895           21 YRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKK   95 (527)
Q Consensus        21 ~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~   95 (527)
                      ..+..++ +++.|+.+.  .+..|++|++|||++|.+.+..+    ..++.|++++|.++.++       .++.+++|+.
T Consensus        44 ~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~-------~l~~l~~L~~  114 (384)
T d2omza2          44 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-------PLANLTNLTG  114 (384)
T ss_dssp             TTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-------GGTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccccc-------cccccccccc
Confidence            3455555 555555542  34556666666666666543321    13556666666665432       2455666666


Q ss_pred             EEcccCCCCcccChhHhhccccccEEEcccCccc-----------------------------------------cccch
Q 035895           96 LDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNIS-----------------------------------------GGISE  134 (527)
Q Consensus        96 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-----------------------------------------~~~~~  134 (527)
                      |++++|.+++..+...  . ..+..+....|.+.                                         .....
T Consensus       115 L~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         115 LTLFNNQITDIDPLKN--L-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             EECCSSCCCCCGGGTT--C-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccccccccc--c-ccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            6666666654322111  1 12222222222111                                         11234


Q ss_pred             hhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccC
Q 035895          135 EIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTAL  214 (527)
Q Consensus       135 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  214 (527)
                      .+..+++++.+++++|.+++..+  +...++|+.|++++|+++. + +.+..+++|+.|++++|++++..+  ++.+++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L  265 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKL  265 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccC
Confidence            56677889999999999987654  4667899999999999974 3 468889999999999999987543  7888999


Q ss_pred             ceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccccc
Q 035895          215 RNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNR  294 (527)
Q Consensus       215 ~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  294 (527)
                      ++|++++|+++++++ +..+..+..+.+..|.+.+  +..+..++.++.|++++|++++..  .+..+++|++|++++|+
T Consensus       266 ~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         266 TELKLGANQISNISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             CEeeccCcccCCCCc-ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            999999999998875 6678889999999998875  345788999999999999998753  38899999999999999


Q ss_pred             ceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEeeee
Q 035895          295 LQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIVVV  341 (527)
Q Consensus       295 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~~~  341 (527)
                      +++ ++ .|.++++|+.|++++|++++++|  +.+++.|+.|+++.+
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            985 34 68999999999999999998766  788999999987654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.94  E-value=7.1e-28  Score=238.49  Aligned_cols=138  Identities=22%  Similarity=0.368  Sum_probs=118.0

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEe
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey  433 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++..                             .+.+++..++||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            46799999999999999999986 5799999999742                             12345678899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--CCCcEEEeecccccccCCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--DNIVAHLSDFGIAKLLTGEDQ  511 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~Dfg~a~~~~~~~~  511 (527)
                      |+||+|.+++......+++..+..|+.||+.||+|||   +++||||||||+|||++  .++.+||+|||+|+.+.....
T Consensus       105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~  181 (350)
T d1koaa2         105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS  181 (350)
T ss_dssp             CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSC
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccccc
Confidence            9999999999766667899999999999999999999   99999999999999996  468999999999998754322


Q ss_pred             ccceeccccccccccC
Q 035895          512 SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       512 ~~~~~~~~~t~~y~aP  527 (527)
                         .....||+.||||
T Consensus       182 ---~~~~~gT~~Y~aP  194 (350)
T d1koaa2         182 ---VKVTTGTAEFAAP  194 (350)
T ss_dssp             ---EEEECSCTTTCCH
T ss_pred             ---cceecCcccccCH
Confidence               2345689999998

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.94  E-value=1e-27  Score=237.58  Aligned_cols=137  Identities=25%  Similarity=0.413  Sum_probs=117.8

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee-----------------------------ccCccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF-----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~-----------------------------~~~~~~~~~lv~ey~  434 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.                             .+.+++..++|||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            5699999999999999999986 5799999999753                             123456778999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC--CCCcEEEeecccccccCCCCCc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD--DNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~--~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +||+|.+.+...+..+++.++..|+.||+.||+|||   +++||||||||+|||++  .++.+||+|||+|+.+..... 
T Consensus       109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~-  184 (352)
T d1koba_         109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI-  184 (352)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC-
T ss_pred             CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCCc-
Confidence            999999988766667899999999999999999999   99999999999999998  678999999999998764322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....||++||||
T Consensus       185 --~~~~~gt~~y~aP  197 (352)
T d1koba_         185 --VKVTTATAEFAAP  197 (352)
T ss_dssp             --EEEECSSGGGCCH
T ss_pred             --eeeccCcccccCH
Confidence              2335689999998

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-28  Score=232.84  Aligned_cols=141  Identities=28%  Similarity=0.510  Sum_probs=110.3

Q ss_pred             cCCccccceeccCCceEEEEEEccCC-----cEEEEEEEee------------------------------ccCccceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDG-----MEFAIKVFHF------------------------------SCSNEDFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~-----~~vavK~~~~------------------------------~~~~~~~~~  428 (527)
                      .+.|+..++||+|+||+||+|.++..     ..||||+++.                              .+..++..+
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            35688999999999999999987532     4799999742                              233456678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      +|||||.+|++.+++......+++.++..++.||+.|++|||   +++||||||||+|||++.++.+||+|||+|+.+..
T Consensus        86 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  162 (283)
T d1mqba_          86 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  162 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcccC
Confidence            999999999999998877778999999999999999999999   99999999999999999999999999999998754


Q ss_pred             CCC-ccceeccccccccccC
Q 035895          509 EDQ-SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~-~~~~~~~~~t~~y~aP  527 (527)
                      ... ........||+.||||
T Consensus       163 ~~~~~~~~~~~~gt~~Y~AP  182 (283)
T d1mqba_         163 DPEATYTTSGGKIPIRWTAP  182 (283)
T ss_dssp             -----------CCCGGGSCH
T ss_pred             CCccceEeccCCCCccccCH
Confidence            322 2233345689999998

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.4e-28  Score=233.97  Aligned_cols=132  Identities=32%  Similarity=0.416  Sum_probs=112.7

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec--------------------------------cCccceeEEEEE
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS--------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~--------------------------------~~~~~~~~lv~e  432 (527)
                      .|+..+.||+|+||+||+|+. .+++.||||+++..                                +..++..++|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            389999999999999999985 57899999997531                                223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      ||++|++..++.. +..+++.++..++.||+.||+|||   +++||||||||+|||+++++.+||+|||+|+.....   
T Consensus        96 ~~~~g~l~~~~~~-~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~---  168 (309)
T d1u5ra_          96 YCLGSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---  168 (309)
T ss_dssp             CCSEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB---
T ss_pred             ecCCCchHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCCC---
Confidence            9999999776654 346899999999999999999999   999999999999999999999999999999875422   


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                         ....||+.||||
T Consensus       169 ---~~~~GT~~Y~AP  180 (309)
T d1u5ra_         169 ---NSFVGTPYWMAP  180 (309)
T ss_dssp             ---CCCCSCGGGCCH
T ss_pred             ---CccccCccccCH
Confidence               235689999998

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-27  Score=232.19  Aligned_cols=138  Identities=28%  Similarity=0.436  Sum_probs=117.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee---------------------------------ccCccceeEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF---------------------------------SCSNEDFRAL  429 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~---------------------------------~~~~~~~~~l  429 (527)
                      .++|++.+.||+|+||+||+|+. .+++.||||+++.                                 .+.+++..++
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            36899999999999999999986 4789999999852                                 1223456789


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |||||++|+|.+++...+ .++..++..++.||+.||+|||   +++||||||||+|||+++++.+|++|||+|+.....
T Consensus        81 vmEy~~~g~L~~~i~~~~-~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~  156 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  156 (320)
T ss_dssp             EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEeecCCCcHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhcccc
Confidence            999999999999997543 5788889999999999999999   999999999999999999999999999999876433


Q ss_pred             CCccceeccccccccccC
Q 035895          510 DQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~~~~~~~~~t~~y~aP  527 (527)
                      ..  ..+...||+.||||
T Consensus       157 ~~--~~~~~~gt~~y~aP  172 (320)
T d1xjda_         157 DA--KTNTFCGTPDYIAP  172 (320)
T ss_dssp             TC--CBCCCCSCGGGCCH
T ss_pred             cc--cccccCCCCCcCCH
Confidence            22  23345789999998

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-28  Score=233.46  Aligned_cols=139  Identities=25%  Similarity=0.448  Sum_probs=111.5

Q ss_pred             cCCccccceeccCCceEEEEEEccCCcEEEEEEEee----------------------------ccCccceeEEEEEecc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYTT  435 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~~  435 (527)
                      .++|++.+.||+|+||+||+|+.++++.||||+++.                            .+ .++..++|||||+
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~-~~~~~~lv~Ey~~   94 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMS   94 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEE-CSSSCEEEECCCT
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEE-ecCCeEEEEEecC
Confidence            467999999999999999999998888999999742                            12 2345689999999


Q ss_pred             CCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 035895          436 NGSLEKVLYSS-NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMT  514 (527)
Q Consensus       436 ~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~  514 (527)
                      +|+|..++... ...+++.++..|+.+|+.||+|||   +++|+||||||+|||+|+++++||+|||+|+.+.... ...
T Consensus        95 ~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~-~~~  170 (285)
T d1fmka3          95 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTA  170 (285)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             CCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCC-cee
Confidence            99999888653 345899999999999999999999   8999999999999999999999999999999775332 223


Q ss_pred             eeccccccccccC
Q 035895          515 QTQTLAIIGYMAP  527 (527)
Q Consensus       515 ~~~~~~t~~y~aP  527 (527)
                      .+...+|+.||||
T Consensus       171 ~~~~~gt~~y~aP  183 (285)
T d1fmka3         171 RQGAKFPIKWTAP  183 (285)
T ss_dssp             -----CCGGGSCH
T ss_pred             eccccccccccCh
Confidence            3345689999998

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.4e-27  Score=232.36  Aligned_cols=136  Identities=25%  Similarity=0.375  Sum_probs=104.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEee------------------------------ccCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~------------------------------~~~~~~~~~lv~ey  433 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++..                              .+.+++..++||||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~   88 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQL   88 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            5599999999999999999986 4789999999742                              12344567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |+||+|.+++... ..+++.++..++.|++.||+|||   +++||||||||+||++.   +++.+||+|||+|+......
T Consensus        89 ~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          89 VSGGELFDRIVEK-GFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             CCSCBHHHHHHTC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             cCCCcHHHhhhcc-cCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence            9999999999754 46899999999999999999999   99999999999999994   57899999999998765332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .   ....+||+.||||
T Consensus       165 ~---~~~~~GT~~y~AP  178 (307)
T d1a06a_         165 V---LSTACGTPGYVAP  178 (307)
T ss_dssp             -----------CTTSCH
T ss_pred             e---eeeeeeCccccCc
Confidence            1   2235699999998

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-27  Score=224.19  Aligned_cols=133  Identities=27%  Similarity=0.354  Sum_probs=109.7

Q ss_pred             ccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c----CccceeEEE
Q 035895          387 FSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C----SNEDFRALV  430 (527)
Q Consensus       387 ~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~----~~~~~~~lv  430 (527)
                      |+..+.||+|+||+||+|+. .+++.||+|++...                               +    ..+...++|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            36677899999999999986 46889999987421                               0    112346899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeecccccccC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTP--IIHCDLKPHNKLLD-DNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~nill~-~~~~~kl~Dfg~a~~~~  507 (527)
                      ||||++|+|.+++.+. ..+++..+..++.||++||+|||   +++  ||||||||+|||++ +++.+||+|||+|+...
T Consensus        91 mE~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~gl~yLH---~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             EECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EeCCCCCcHHHHHhcc-ccccHHHHHHHHHHHHHHHHHHH---HCCCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            9999999999999754 35788889999999999999999   777  99999999999996 57999999999998754


Q ss_pred             CCCCccceeccccccccccC
Q 035895          508 GEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...    ....+||+.||||
T Consensus       167 ~~~----~~~~~GT~~Y~aP  182 (270)
T d1t4ha_         167 ASF----AKAVIGTPEFMAP  182 (270)
T ss_dssp             TTS----BEESCSSCCCCCG
T ss_pred             CCc----cCCcccCccccCH
Confidence            321    2346799999999

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=4.1e-27  Score=225.55  Aligned_cols=136  Identities=27%  Similarity=0.438  Sum_probs=116.8

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------------------cCcc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------------------CSNE  424 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------------------~~~~  424 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..                                       +.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5799999999999999999986 57899999997421                                       1234


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      +..++|||||+||+|.+++... ..+++.++..++.||++||+|||   +++||||||||+||+++.++.+||+|||+|+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~  158 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSC  158 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             cceEEEEEcCCCchHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccchhee
Confidence            5668999999999999999764 46899999999999999999999   9999999999999999999999999999999


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .+....   ..+...||..|+||
T Consensus       159 ~~~~~~---~~~~~~gt~~y~~P  178 (277)
T d1phka_         159 QLDPGE---KLREVCGTPSYLAP  178 (277)
T ss_dssp             ECCTTC---CBCCCCSCGGGCCH
T ss_pred             EccCCC---ceeeeeccCCCCCH
Confidence            875432   22345689999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-25  Score=218.92  Aligned_cols=264  Identities=20%  Similarity=0.205  Sum_probs=223.6

Q ss_pred             ceEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcE
Q 035895           65 DELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLIS  144 (527)
Q Consensus        65 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  144 (527)
                      +.++=+++.++++|..++        +++++|+|++|+|+.+.+..|..+. +|++|++++|.+....|..|.++++|++
T Consensus        13 ~~~~C~~~~L~~lP~~l~--------~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--------PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--------TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEecCCCCCccCCCCC--------CCCCEEECcCCcCCCcChhHhhccc-cccccccccccccccchhhhhCCCccCE
Confidence            344555556666665432        5799999999999987666787775 7999999999999988999999999999


Q ss_pred             EEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC--CCCCccccCCccCceeeCCCC
Q 035895          145 IDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS--GSIPTCFGNLTALRNLHLDSN  222 (527)
Q Consensus       145 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N  222 (527)
                      |++++|+++.....   ....+..|++++|.+.+..+..+.....+..++...|...  ...+..|..+++|+.+++++|
T Consensus        84 L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            99999999865432   3468899999999999777777888888899998888654  344567889999999999999


Q ss_pred             CCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCC
Q 035895          223 ELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNS  302 (527)
Q Consensus       223 ~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  302 (527)
                      .++.+|..+  .++|+.|++++|......+..|..++.+++|++++|.+.+..+..|.++++|++|+|++|+|+ .+|..
T Consensus       161 ~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         161 NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             CccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence            999998654  578999999999999999999999999999999999999988999999999999999999998 56889


Q ss_pred             CCCCCCCCEEeCCCCcccccCccch------hhhccCCeeEeeeeee
Q 035895          303 FDDLVSLESLDLSNNNLSEIIPLSL------EKLLYLNILLIVVVIL  343 (527)
Q Consensus       303 ~~~l~~L~~L~ls~N~l~~~~p~~~------~~l~~L~~L~~~~~~~  343 (527)
                      |..+++|++|+|++|+|+.+....|      ..+..|+.|+++.+.+
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            9999999999999999998755444      4567788888876654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.4e-27  Score=232.33  Aligned_cols=146  Identities=27%  Similarity=0.425  Sum_probs=117.5

Q ss_pred             HHhhhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccC
Q 035895          379 ELLRATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCS  422 (527)
Q Consensus       379 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~  422 (527)
                      +++...++|++.+.||+|+||+||+|+.+      +++.||||+++.                              .+.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            34445678999999999999999999853      457899999742                              233


Q ss_pred             ccceeEEEEEeccCCcHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEe
Q 035895          423 NEDFRALVLEYTTNGSLEKVLYSSN-----------------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIH  479 (527)
Q Consensus       423 ~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiH  479 (527)
                      ..+..++||||+++|+|.+++....                       ..+++.++..|+.|++.||+|+|   +++|||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivH  163 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVH  163 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEe
Confidence            4456789999999999999986422                       23788899999999999999999   999999


Q ss_pred             cCCCCCCeeeCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          480 CDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       480 rdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |||||+|||+|.++.+||+|||+|+...........+...+|++||||
T Consensus       164 rDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aP  211 (301)
T d1lufa_         164 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  211 (301)
T ss_dssp             SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             eEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCH
Confidence            999999999999999999999999876543333333445688999998

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-27  Score=231.15  Aligned_cols=138  Identities=28%  Similarity=0.397  Sum_probs=114.8

Q ss_pred             cCCcccc-ceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------c----CccceeEEEEE
Q 035895          384 TDGFSAN-NLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------C----SNEDFRALVLE  432 (527)
Q Consensus       384 ~~~~~~~-~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~----~~~~~~~lv~e  432 (527)
                      .++|++. ++||+|+||+||+|+. .+++.||||+++..                         +    ..+...++|||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmE   89 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   89 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEE
Confidence            4679886 4699999999999985 67899999997531                         0    12345789999


Q ss_pred             eccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 035895          433 YTTNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD---NIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       433 y~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~---~~~~kl~Dfg~a~~~~~  508 (527)
                      ||+||+|.+++...+ ..+++.++..|+.||+.||+|||   +++|+||||||+|||+++   ++.+|++|||+|+....
T Consensus        90 y~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~  166 (335)
T d2ozaa1          90 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS  166 (335)
T ss_dssp             CCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCC
T ss_pred             CCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccccceeeeccC
Confidence            999999999997643 46889999999999999999999   999999999999999975   56799999999997754


Q ss_pred             CCCccceeccccccccccC
Q 035895          509 EDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...   .....||++||||
T Consensus       167 ~~~---~~~~~gt~~y~aP  182 (335)
T d2ozaa1         167 HNS---LTTPCYTPYYVAP  182 (335)
T ss_dssp             CCC---CCCCSCCCSSCCC
T ss_pred             CCc---cccccCCcccCCc
Confidence            322   2345689999999

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.9e-27  Score=232.55  Aligned_cols=135  Identities=28%  Similarity=0.414  Sum_probs=116.1

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee--------------------------------ccCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF--------------------------------SCSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~--------------------------------~~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++..                                .+...+..++|
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            36799999999999999999986 5799999999752                                11234566899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+.+|+|.+++...+ .++......++.||+.||+|||   +++||||||||+|||++.++.+||+|||+|+.+....
T Consensus       120 ~e~~~~g~l~~~l~~~~-~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~  195 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT  195 (350)
T ss_dssp             EECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB
T ss_pred             cccccccchhhhHhhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccc
Confidence            99999999999987654 5788899999999999999999   9999999999999999999999999999999875332


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                           ....||+.||||
T Consensus       196 -----~~~~Gt~~Y~AP  207 (350)
T d1rdqe_         196 -----WTLCGTPEALAP  207 (350)
T ss_dssp             -----CCCEECGGGCCH
T ss_pred             -----ccccCccccCCH
Confidence                 235689999998

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-27  Score=227.38  Aligned_cols=140  Identities=26%  Similarity=0.421  Sum_probs=113.1

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec----------------------------cCcc----ceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS----------------------------CSNE----DFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~----------------------------~~~~----~~~~lv~e  432 (527)
                      ++|.+.+.||+|+||.||+|++ +|+.||||+++..                            |..+    ...++|||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E   81 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence            4577889999999999999986 5889999997421                            1111    24689999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFG-----YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ||++|+|.+++++.  .++|.++..++.++|.|++|+|..     ++++||||||||+|||+++++.+||+|||+++...
T Consensus        82 y~~~g~L~~~l~~~--~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~  159 (303)
T d1vjya_          82 YHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             CCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             cccCCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccccc
Confidence            99999999999764  578999999999999999999932     34799999999999999999999999999999875


Q ss_pred             CCCCc--cceeccccccccccC
Q 035895          508 GEDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~~--~~~~~~~~t~~y~aP  527 (527)
                      .....  .......||++||||
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aP  181 (303)
T d1vjya_         160 SATDTIDIAPNHRVGTKRYMAP  181 (303)
T ss_dssp             TTTTEECC----CCSCGGGCCH
T ss_pred             CCCcceeccccceecccCcCCh
Confidence            43221  122345689999998

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-27  Score=224.77  Aligned_cols=133  Identities=27%  Similarity=0.399  Sum_probs=107.2

Q ss_pred             ceeccCCceEEEEEEcc---CCcEEEEEEEeec------------------------------cCccceeEEEEEeccCC
Q 035895          391 NLIGRGSFGSVYKARLQ---DGMEFAIKVFHFS------------------------------CSNEDFRALVLEYTTNG  437 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~---~~~~vavK~~~~~------------------------------~~~~~~~~lv~ey~~~g  437 (527)
                      +.||+|+||+||+|.++   +++.||||+++..                              +...+..++|||||++|
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            57999999999999864   3568999997421                              11223467999999999


Q ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc-ccee
Q 035895          438 SLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS-MTQT  516 (527)
Q Consensus       438 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~-~~~~  516 (527)
                      +|.+++... ..+++..+..|+.||+.||+|||   +++||||||||+|||++.++.+|++|||+|+.+...... ....
T Consensus        93 ~L~~~l~~~-~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~  168 (277)
T d1xbba_          93 PLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  168 (277)
T ss_dssp             EHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC--
T ss_pred             cHHHHHhhc-cCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhcccccccccccc
Confidence            999998754 45889999999999999999999   899999999999999999999999999999987543322 2223


Q ss_pred             ccccccccccC
Q 035895          517 QTLAIIGYMAP  527 (527)
Q Consensus       517 ~~~~t~~y~aP  527 (527)
                      ...||+.||||
T Consensus       169 ~~~gt~~y~AP  179 (277)
T d1xbba_         169 HGKWPVKWYAP  179 (277)
T ss_dssp             --CCCGGGCCH
T ss_pred             ccCCCceecCc
Confidence            45689999998

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-26  Score=224.33  Aligned_cols=136  Identities=27%  Similarity=0.413  Sum_probs=114.7

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-----------------------------------cCccceeE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-----------------------------------CSNEDFRA  428 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-----------------------------------~~~~~~~~  428 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                                   +.+++..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5699999999999999999986 57999999997421                                   23345678


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeccccc
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI----VAHLSDFGIAK  504 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~----~~kl~Dfg~a~  504 (527)
                      +|||||+||+|.+++...+ .+++.++..++.|++.||+|||   +++||||||||+||+++.++    .+|++|||+|+
T Consensus        90 iv~E~~~gg~L~~~i~~~~-~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEcCCCccccchhcccc-ccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhhh
Confidence            9999999999999997643 5889999999999999999999   99999999999999998766    59999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .......   .....+|+.||||
T Consensus       166 ~~~~~~~---~~~~~~t~~y~AP  185 (293)
T d1jksa_         166 KIDFGNE---FKNIFGTPEFVAP  185 (293)
T ss_dssp             ECTTSCB---CSCCCCCGGGCCH
T ss_pred             hcCCCcc---ccccCCCCcccCH
Confidence            8753322   2235688999998

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-26  Score=225.93  Aligned_cols=138  Identities=22%  Similarity=0.358  Sum_probs=116.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEee----------------------------ccCccceeEEEEEec
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF----------------------------SCSNEDFRALVLEYT  434 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~----------------------------~~~~~~~~~lv~ey~  434 (527)
                      .+.|++.+.||+|+||+||+|.. .+++.||||++..                            ...+++..++|||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            36699999999999999999986 5789999999753                            123456778999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCCc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD--NIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~--~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      +||+|.+++...+..+++.+...|+.||+.||+|||   +++|+||||||+|||++.  ...+|++|||+++....... 
T Consensus        84 ~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~-  159 (321)
T d1tkia_          84 SGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN-  159 (321)
T ss_dssp             CCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE-
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCCc-
Confidence            999999999776667899999999999999999999   999999999999999984  45899999999987653321 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....+|++||||
T Consensus       160 --~~~~~~t~~y~ap  172 (321)
T d1tkia_         160 --FRLLFTAPEYYAP  172 (321)
T ss_dssp             --EEEEESCGGGSCH
T ss_pred             --ccccccccccccc
Confidence              2235678899997

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.9e-27  Score=228.15  Aligned_cols=140  Identities=25%  Similarity=0.380  Sum_probs=111.5

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCc----EEEEEEEeecc-----------------------------CccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGM----EFAIKVFHFSC-----------------------------SNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~----~vavK~~~~~~-----------------------------~~~~~~~lv  430 (527)
                      ++|++.++||+|+||+||+|++. +|+    .||+|+++...                             ..++..+++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            46999999999999999999864 444    58888874211                             112345789


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      |||+.+|+|.+.+......+++..+..++.|||.||+|||   +++||||||||+||+++.++.+||+|||+|+......
T Consensus        89 ~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~  165 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  165 (317)
T ss_dssp             EECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTC
T ss_pred             EEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceeccccc
Confidence            9999999999998887778999999999999999999999   8999999999999999999999999999999876544


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .........||+.||||
T Consensus       166 ~~~~~~~~~gt~~y~AP  182 (317)
T d1xkka_         166 KEYHAEGGKVPIKWMAL  182 (317)
T ss_dssp             C--------CCTTTSCH
T ss_pred             ccccccccccCccccCh
Confidence            33333445689999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.2e-24  Score=218.46  Aligned_cols=281  Identities=29%  Similarity=0.436  Sum_probs=221.7

Q ss_pred             hhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc----cccceEEcccccccCCCCCCcc---------
Q 035895           18 DVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS----SIVDELSLSDNYLTSSTPELSF---------   83 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~----~~l~~L~Ls~N~l~~~~~~~~~---------   83 (527)
                      +.+..+..+| ++|+|+++++  |.+|++|++|++++|.+.+..+    ..++.|++++|.++........         
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             ccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5677899999 9999999865  8999999999999999875433    2478899999888764321100         


Q ss_pred             ---------------------------cccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhh
Q 035895           84 ---------------------------LSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEI  136 (527)
Q Consensus        84 ---------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  136 (527)
                                                 ...+...+.........|....  ...+..+ ++++.+++++|.+++..|  +
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~l~l~~n~i~~~~~--~  215 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKL-TNLESLIATNNQISDITP--L  215 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGC-TTCSEEECCSSCCCCCGG--G
T ss_pred             cccccccccccccccccccccccccchhhhhcccccccccccccccccc--ccccccc-cccceeeccCCccCCCCc--c
Confidence                                       0011122233334444443332  2334444 479999999999997655  4


Q ss_pred             cCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCce
Q 035895          137 GNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRN  216 (527)
Q Consensus       137 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  216 (527)
                      ..+++|++|++++|+++..  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..  .+..++.++.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~  289 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTN  289 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccc
Confidence            6678999999999999853  367889999999999999986543  788999999999999998654  3788999999


Q ss_pred             eeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          217 LHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       217 L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +.++.|.++.++. +..++.++.+++++|++.+..  .+..+++|++|++++|++++ +| .+.++++|++|++++|+++
T Consensus       290 l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         290 LELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             EECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccccccc-cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            9999999998764 677899999999999998753  38899999999999999975 44 6999999999999999999


Q ss_pred             eecCCCCCCCCCCCEEeCCCCc
Q 035895          297 GSIPNSFDDLVSLESLDLSNNN  318 (527)
Q Consensus       297 ~~~p~~~~~l~~L~~L~ls~N~  318 (527)
                      +..|  +.++++|+.|+|++|.
T Consensus       365 ~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         365 DLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             BCGG--GTTCTTCSEEECCCEE
T ss_pred             CChh--hccCCCCCEeeCCCCc
Confidence            7665  8999999999999983

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.8e-27  Score=227.52  Aligned_cols=143  Identities=22%  Similarity=0.381  Sum_probs=117.6

Q ss_pred             hhcCCccccceeccCCceEEEEEEcc------CCcEEEEEEEee------------------------------ccCccc
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARLQ------DGMEFAIKVFHF------------------------------SCSNED  425 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~~------~~~~vavK~~~~------------------------------~~~~~~  425 (527)
                      ...++|++.+.||+|+||.||+|.+.      +++.||||+++.                              .+..++
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            33467889999999999999999863      357899999752                              234456


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN---------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAH  496 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~k  496 (527)
                      ..++|||||++|+|.+++...+         ..+++..+..++.++|+||.|||   +++|+||||||+|||+++++++|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEE
Confidence            6789999999999999886431         23688899999999999999999   89999999999999999999999


Q ss_pred             EeecccccccCCCCCccceeccccccccccC
Q 035895          497 LSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       497 l~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+|||+|+.+.............+|+.||||
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aP  204 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  204 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             EeecccceeccCCcceeeccceecccccCCH
Confidence            9999999977544333334445689999998

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=224.64  Aligned_cols=142  Identities=25%  Similarity=0.439  Sum_probs=119.3

Q ss_pred             hcCCccccceeccCCceEEEEEEc------cCCcEEEEEEEee-------------------------------ccCccc
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARL------QDGMEFAIKVFHF-------------------------------SCSNED  425 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~------~~~~~vavK~~~~-------------------------------~~~~~~  425 (527)
                      ..++|++.+.||+|+||.||+|++      .+++.||||+++.                               .|..++
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            346789999999999999999975      3467899999752                               233445


Q ss_pred             eeEEEEEeccCCcHHHHHHhcC-----------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCee
Q 035895          426 FRALVLEYTTNGSLEKVLYSSN-----------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKL  488 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~-----------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nil  488 (527)
                      ..++|||||++|+|.++++...                 ..+++..+..++.||+.|++|||   +++||||||||+||+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccccccccc
Confidence            6789999999999999987532                 24788899999999999999999   999999999999999


Q ss_pred             eCCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          489 LDDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       489 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ++.++.+|++|||+++...........+...||+.||||
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aP  216 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAP  216 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCH
T ss_pred             ccccCcccccccchheeccCCCcceEeeecccChHHcCH
Confidence            999999999999999987654444444556789999998

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.8e-27  Score=223.32  Aligned_cols=140  Identities=26%  Similarity=0.413  Sum_probs=105.3

Q ss_pred             cCCccccceeccCCceEEEEEEccC----CcEEEEEEEeec-----------------------------cCccceeEEE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQD----GMEFAIKVFHFS-----------------------------CSNEDFRALV  430 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~~-----------------------------~~~~~~~~lv  430 (527)
                      .++|++.+.||+|+||+||+|+...    +..||||+++..                             +..++..++|
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv   85 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII   85 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEE
Confidence            3579999999999999999998642    456899986321                             1124567899


Q ss_pred             EEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 035895          431 LEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~  510 (527)
                      ||||++|++.+++......+++.++..++.||++||+|+|   +++||||||||+||++++++.+||+|||+|+......
T Consensus        86 ~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~  162 (273)
T d1mp8a_          86 MELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  162 (273)
T ss_dssp             EECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             EEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccchhheeccCCc
Confidence            9999999999998877777899999999999999999999   9999999999999999999999999999999765432


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      . ...+...||+.||||
T Consensus       163 ~-~~~~~~~gt~~y~ap  178 (273)
T d1mp8a_         163 Y-YKASKGKLPIKWMAP  178 (273)
T ss_dssp             ---------CCGGGCCH
T ss_pred             c-eeccceecCcccchh
Confidence            2 223345678999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-24  Score=210.16  Aligned_cols=202  Identities=22%  Similarity=0.269  Sum_probs=91.3

Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEee-cCcccccCcccccCCCCCCEEec
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLG-GNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      +++|+|++|+|+.+.+..|..+. +|++|++++|.+..+.+..+..+..++.++.. .|.++...+..|.++++|+.|++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555444333444332 34444444444444444444444444444432 33344444444444555555555


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEEccCCccccc
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGP  250 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~  250 (527)
                      ++|.+....+..+....+|+.+++++|+|+++.+.+|..+++|+.|++++|+++.+|. .+.++++|+.++++.|++.+.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            5554443344444444445555555555544444444444455555555555444322 223333444444444444333


Q ss_pred             CCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccc
Q 035895          251 LPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRL  295 (527)
Q Consensus       251 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (527)
                      .|..|..+++|++|++++|++.+..|..|.++++|++|++++|++
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            344444444444444444444444444444444444444444443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=223.53  Aligned_cols=141  Identities=26%  Similarity=0.416  Sum_probs=112.0

Q ss_pred             cCCccccceeccCCceEEEEEEcc--------CCcEEEEEEEee-------------------------------ccCcc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARLQ--------DGMEFAIKVFHF-------------------------------SCSNE  424 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~~--------~~~~vavK~~~~-------------------------------~~~~~  424 (527)
                      .+.|++.+.||+|+||.||+|+..        ++..||||+++.                               .|.++
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            457889999999999999999853        235799998742                               24455


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeee
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSN---------------YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLL  489 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill  489 (527)
                      +..++|||||++|+|.+++....               ..+++.++..++.|++.||+|+|   +++||||||||+|||+
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl  168 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV  168 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred             CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceee
Confidence            67789999999999999997543               34789999999999999999999   9999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCCccceeccccccccccC
Q 035895          490 DDNIVAHLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       490 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +.++.+||+|||+++...............+|+.||||
T Consensus       169 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  206 (299)
T d1fgka_         169 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  206 (299)
T ss_dssp             CTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCH
T ss_pred             cCCCCeEeccchhhccccccccccccccCCCChhhhhh
Confidence            99999999999999987544333333345688999998

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-26  Score=223.15  Aligned_cols=138  Identities=28%  Similarity=0.401  Sum_probs=113.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..                               +..++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            6899999999999999999986 67999999997421                               223456789999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+.++.+..........+++.++..++.|++.||+|||   +++||||||||+|||++.++.+|++|||+|+....... 
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~-  157 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-  157 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB-
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCCcc-
Confidence            99876555444444567899999999999999999999   99999999999999999999999999999987754322 


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                       ......||+.|+||
T Consensus       158 -~~~~~~gt~~y~ap  171 (298)
T d1gz8a_         158 -TYTHEVVTLWYRAP  171 (298)
T ss_dssp             -CTTCCBCCCTTCCH
T ss_pred             -cceeecccceeeeh
Confidence             22335688999998

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=4e-26  Score=219.25  Aligned_cols=139  Identities=22%  Similarity=0.417  Sum_probs=108.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc--------------------------------C----cccee
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC--------------------------------S----NEDFR  427 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~--------------------------------~----~~~~~  427 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++...                                .    .....
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            5699999999999999999985 579999999985311                                0    11236


Q ss_pred             EEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 035895          428 ALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLT  507 (527)
Q Consensus       428 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~  507 (527)
                      ++|||||+||+|.+++...+ .+++.++..++.||+.||+|||   +++||||||||+||+++.++.++++|||.++...
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~-~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~  162 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIA  162 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEECC
T ss_pred             EEEEECCCCCEehhhhcccC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhhhc
Confidence            79999999999999886543 5789999999999999999999   9999999999999999999999999999988664


Q ss_pred             CCCC-ccceeccccccccccC
Q 035895          508 GEDQ-SMTQTQTLAIIGYMAP  527 (527)
Q Consensus       508 ~~~~-~~~~~~~~~t~~y~aP  527 (527)
                      .... .......+||+.||||
T Consensus       163 ~~~~~~~~~~~~~Gt~~Y~aP  183 (277)
T d1o6ya_         163 DSGNSVTQTAAVIGTAQYLSP  183 (277)
T ss_dssp             ----------------TTCCH
T ss_pred             cccccccccccccCcccccCH
Confidence            3221 1223345789999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-25  Score=212.80  Aligned_cols=225  Identities=21%  Similarity=0.218  Sum_probs=191.0

Q ss_pred             CEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEecc-
Q 035895           94 KKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFR-  172 (527)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-  172 (527)
                      ..++.++++++. +|..+   +.++++|+|++|+|+.+.+..|.++++|++|++++|++....+..+..+..+..++.. 
T Consensus        14 ~~v~c~~~~L~~-iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCc-cCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            345677777775 45543   3578999999999998888899999999999999999999888888899999998765 


Q ss_pred             CcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch-hhhCCCCccEEEccCCcccccC
Q 035895          173 GNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS-ILWNLKDILYLDFWSNLFVGPL  251 (527)
Q Consensus       173 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~l~l~~n~~~~~~  251 (527)
                      .|.+....|..|.++++|++|++++|.+....+..+..+++|+.+++++|+++.+|. .+..++.|+.|++++|.+.+..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            567777778889999999999999999988888889999999999999999999865 4556788888888888888888


Q ss_pred             CccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccccc
Q 035895          252 PSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       252 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  322 (527)
                      +..|..+++|+++++++|++++..|..|.++++|++|++++|++.+..|..|..+++|+.|++++|++...
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            88888888888888888888888888888888888888888888887778888888888888888888754

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.92  E-value=1.2e-25  Score=217.47  Aligned_cols=139  Identities=19%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                            .......++||||+ 
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-   83 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-   83 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-
Confidence            4699999999999999999995 57899999987431                            12234567999999 


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-----CCcEEEeecccccccCCCC
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-----NIVAHLSDFGIAKLLTGED  510 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-----~~~~kl~Dfg~a~~~~~~~  510 (527)
                      +|+|.+++...+..++......++.|++.||+|+|   +++||||||||+||+++.     ++.+|++|||+|+.+....
T Consensus        84 ~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~  160 (293)
T d1csna_          84 GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPV  160 (293)
T ss_dssp             CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTT
T ss_pred             CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccCc
Confidence            68999999877777899999999999999999999   999999999999999974     5789999999999865321


Q ss_pred             Cc-----cceeccccccccccC
Q 035895          511 QS-----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~-----~~~~~~~~t~~y~aP  527 (527)
                      ..     .......||+.||||
T Consensus       161 ~~~~~~~~~~~~~~GT~~y~aP  182 (293)
T d1csna_         161 TKQHIPYREKKNLSGTARYMSI  182 (293)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCH
T ss_pred             cccceeecccCceEEchhhcCH
Confidence            11     112245699999998

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.5e-26  Score=216.67  Aligned_cols=135  Identities=27%  Similarity=0.305  Sum_probs=111.8

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------------cCccce
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------------CSNEDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------------~~~~~~  426 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                                     +..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4699999999999999999986 57899999987421                                     112345


Q ss_pred             eEEEEEeccC-CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCC-CCcEEEeeccccc
Q 035895          427 RALVLEYTTN-GSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDD-NIVAHLSDFGIAK  504 (527)
Q Consensus       427 ~~lv~ey~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~-~~~~kl~Dfg~a~  504 (527)
                      .++||||+.+ +++.+++... ..+++.++..++.|+++||+|||   +++||||||||+||+++. ++.+|++|||+|+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~-~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEEEEeccCcchHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECccccce
Confidence            6799999986 6888887654 46788899999999999999999   999999999999999985 5899999999998


Q ss_pred             ccCCCCCccceeccccccccccC
Q 035895          505 LLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       505 ~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ......    .+...||+.||||
T Consensus       160 ~~~~~~----~~~~~GT~~y~aP  178 (273)
T d1xwsa_         160 LLKDTV----YTDFDGTRVYSPP  178 (273)
T ss_dssp             ECCSSC----BCCCCSCGGGSCH
T ss_pred             eccccc----ccccccCCCcCCH
Confidence            764321    2346789999998

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.5e-26  Score=217.98  Aligned_cols=140  Identities=24%  Similarity=0.320  Sum_probs=106.6

Q ss_pred             CCccccceeccCCceEEEEEEcc--C--CcEEEEEEEeec-------------------------------cCccceeEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ--D--GMEFAIKVFHFS-------------------------------CSNEDFRAL  429 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~--~--~~~vavK~~~~~-------------------------------~~~~~~~~l  429 (527)
                      ++|++.+.||+|+||+||+|+..  +  ...||||++...                               +..++..++
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l   87 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   87 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence            56999999999999999999853  2  247899986421                               112345579


Q ss_pred             EEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 035895          430 VLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGE  509 (527)
Q Consensus       430 v~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~  509 (527)
                      |||||++|++.+++......+++..+..++.|+|.||+|||   +++|+||||||+||+++.++.+||+|||+++.+...
T Consensus        88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhcccC
Confidence            99999999999988876667899999999999999999999   899999999999999999999999999999987543


Q ss_pred             CCc-cceeccccccccccC
Q 035895          510 DQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       510 ~~~-~~~~~~~~t~~y~aP  527 (527)
                      ... .......++.+||||
T Consensus       165 ~~~~~~~~~~~~~~~~~aP  183 (273)
T d1u46a_         165 DDHYVMQEHRKVPFAWCAP  183 (273)
T ss_dssp             CCEEEC-----CCGGGCCH
T ss_pred             CCcceecCccccCcccCCH
Confidence            322 222234578899998

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.9e-26  Score=220.09  Aligned_cols=133  Identities=32%  Similarity=0.453  Sum_probs=108.3

Q ss_pred             ccceeccCCceEEEEEEc-cCCcEEEEEEEee----------------------------------ccCccceeEEEEEe
Q 035895          389 ANNLIGRGSFGSVYKARL-QDGMEFAIKVFHF----------------------------------SCSNEDFRALVLEY  433 (527)
Q Consensus       389 ~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~----------------------------------~~~~~~~~~lv~ey  433 (527)
                      ..++||+|+||+||+|+. .+|+.||||++..                                  .+..++..++||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            357899999999999996 5689999998742                                  12234567899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      |.+|++..+.. .+..+++.++..++.||+.||+|||   +++|+||||||+|||+++++.+||+|||+|+.......  
T Consensus        82 ~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--  155 (299)
T d1ua2a_          82 METDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--  155 (299)
T ss_dssp             CSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--
T ss_pred             hcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCcc--
Confidence            99987776653 4456777788899999999999999   99999999999999999999999999999987654322  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      .....+||+.||||
T Consensus       156 ~~~~~~gt~~y~aP  169 (299)
T d1ua2a_         156 AYTHQVVTRWYRAP  169 (299)
T ss_dssp             CCCCSCCCCTTCCH
T ss_pred             cccceecChhhccH
Confidence            22335689999998

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-25  Score=217.15  Aligned_cols=135  Identities=27%  Similarity=0.482  Sum_probs=110.8

Q ss_pred             cceeccCCceEEEEEEccC----CcEEEEEEEee------------------------------ccC-ccceeEEEEEec
Q 035895          390 NNLIGRGSFGSVYKARLQD----GMEFAIKVFHF------------------------------SCS-NEDFRALVLEYT  434 (527)
Q Consensus       390 ~~~lg~G~~g~vy~~~~~~----~~~vavK~~~~------------------------------~~~-~~~~~~lv~ey~  434 (527)
                      .++||+|+||+||+|++..    ...||||+++.                              .|. .+...++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            5789999999999998643    23689998742                              112 234678999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc--
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS--  512 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~--  512 (527)
                      ++|+|.+++.......++..++.++.|++.||.|+|   +++|+||||||+|||+++++.+||+|||+++........  
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            999999999877777888889999999999999999   999999999999999999999999999999976543221  


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                      ...+...||..|+||
T Consensus       189 ~~~~~~~gt~~y~aP  203 (311)
T d1r0pa_         189 HNKTGAKLPVKWMAL  203 (311)
T ss_dssp             TCTTCSSCCGGGSCH
T ss_pred             eecccccccccccCh
Confidence            122234578999998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=204.31  Aligned_cols=201  Identities=23%  Similarity=0.262  Sum_probs=160.8

Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCE
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQF  168 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  168 (527)
                      ....+.+.|.+++.++. +|..+   ++++++|+|++|.|+++.+..|.++++|++|+|++|+|+...  .++.+++|+.
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            44566777888888886 45543   346888888888888777788888888999999998887543  3567888888


Q ss_pred             EeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCccc
Q 035895          169 LSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFV  248 (527)
Q Consensus       169 L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~  248 (527)
                      |++++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.++.+|.                   
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-------------------  141 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-------------------  141 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------------------
T ss_pred             ccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecc-------------------
Confidence            888888887 446677888888888888888887777778888888888888888777653                   


Q ss_pred             ccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          249 GPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       249 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                          ..+..++.|+.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       142 ----~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         142 ----GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ----TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ----ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                44566778888899999998888888889999999999999998 67877888899999999999875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.8e-25  Score=214.90  Aligned_cols=139  Identities=27%  Similarity=0.402  Sum_probs=112.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec----------------------------cCccceeEEEEEecc
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS----------------------------CSNEDFRALVLEYTT  435 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~----------------------------~~~~~~~~lv~ey~~  435 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                            ....+..++||||+.
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC
Confidence            4599999999999999999986 57899999987531                            123456678999994


Q ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCCCCCc
Q 035895          436 NGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLD---DNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       436 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~---~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                       |++.+.+...+..+++..+..++.|++.||+|+|   +++||||||||+||+++   .+..+|++|||+|+.+......
T Consensus        87 -~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (299)
T d1ckia_          87 -PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  162 (299)
T ss_dssp             -CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC
T ss_pred             -CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccc
Confidence             5777777666677899999999999999999999   99999999999999985   4567999999999987543221


Q ss_pred             -----cceeccccccccccC
Q 035895          513 -----MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 -----~~~~~~~~t~~y~aP  527 (527)
                           .......||+.||||
T Consensus       163 ~~~~~~~~~~~~gt~~y~aP  182 (299)
T d1ckia_         163 QHIPYRENKNLTGTARYASI  182 (299)
T ss_dssp             CBCCCCBCCSCCCCSSSCCH
T ss_pred             cceeccccCCcCCCccccCH
Confidence                 122345689999998

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-25  Score=217.99  Aligned_cols=137  Identities=32%  Similarity=0.520  Sum_probs=110.7

Q ss_pred             CCccccceeccCCceEEEEEEcc-CCc--EEEEEEEee-------------------------------ccCccceeEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQ-DGM--EFAIKVFHF-------------------------------SCSNEDFRALV  430 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~-~~~--~vavK~~~~-------------------------------~~~~~~~~~lv  430 (527)
                      ++|++.++||+|+||+||+|+++ ++.  .||||++..                               .+..++..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            56888999999999999999875 444  578887642                               12234567899


Q ss_pred             EEeccCCcHHHHHHhc---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcE
Q 035895          431 LEYTTNGSLEKVLYSS---------------NYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVA  495 (527)
Q Consensus       431 ~ey~~~g~L~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~  495 (527)
                      |||+++|+|.++++..               ...+++.++..++.|||+|++|+|   +++||||||||+|||++.++.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCce
Confidence            9999999999998643               246899999999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ||+|||+|+......   ......+|..|+||
T Consensus       167 kl~DfG~a~~~~~~~---~~~~~~gt~~y~aP  195 (309)
T d1fvra_         167 KIADFGLSRGQEVYV---KKTMGRLPVRWMAI  195 (309)
T ss_dssp             EECCTTCEESSCEEC---CC----CCTTTCCH
T ss_pred             EEccccccccccccc---cccceecCCcccch
Confidence            999999998654221   12234578899998

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.8e-26  Score=214.72  Aligned_cols=136  Identities=29%  Similarity=0.410  Sum_probs=107.5

Q ss_pred             hcCCccccceeccCCceEEEEEEccCCcEEEEEEEee---------------------------cc-CccceeEEEEEec
Q 035895          383 ATDGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHF---------------------------SC-SNEDFRALVLEYT  434 (527)
Q Consensus       383 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~---------------------------~~-~~~~~~~lv~ey~  434 (527)
                      ..++|++.+.||+|+||.||+|+.+ |+.||||+++.                           .| ..++..++||||+
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEecc
Confidence            3467889999999999999999985 78999999743                           12 2234568999999


Q ss_pred             cCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSN-YILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|.+++...+ ..+++..++.|+.||+.|++|||   +++|+||||||+||+++.++.+|++|||+++......   
T Consensus        84 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~---  157 (262)
T d1byga_          84 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---  157 (262)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCCC---
Confidence            9999999997543 35799999999999999999999   8999999999999999999999999999998764321   


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                        ....+|..||||
T Consensus       158 --~~~~~~~~y~aP  169 (262)
T d1byga_         158 --DTGKLPVKWTAP  169 (262)
T ss_dssp             ------CCTTTSCH
T ss_pred             --ccccccccCCCh
Confidence              223567889998

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-25  Score=214.68  Aligned_cols=140  Identities=27%  Similarity=0.398  Sum_probs=114.7

Q ss_pred             hhcCCccccceeccCCceEEEEEEc-cC-CcEEEEEEEeecc--------------------------------------
Q 035895          382 RATDGFSANNLIGRGSFGSVYKARL-QD-GMEFAIKVFHFSC--------------------------------------  421 (527)
Q Consensus       382 ~~~~~~~~~~~lg~G~~g~vy~~~~-~~-~~~vavK~~~~~~--------------------------------------  421 (527)
                      ++.+.|++.+.||+|+||+||+|+. ++ ++.||||+++...                                      
T Consensus         4 ~~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           4 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CCcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            3457899999999999999999986 44 6779999974310                                      


Q ss_pred             -CccceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 035895          422 -SNEDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDF  500 (527)
Q Consensus       422 -~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Df  500 (527)
                       ......+++|||+.+|.+..........+++.....++.|++.||+|||   +++||||||||+|||+++++.+|++||
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~df  160 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF  160 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred             cccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecch
Confidence             0123457999999998887666656667888888999999999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCCccceeccccccccccC
Q 035895          501 GIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       501 g~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      |+++......   ......||+.||||
T Consensus       161 g~~~~~~~~~---~~~~~~gT~~Y~AP  184 (305)
T d1blxa_         161 GLARIYSFQM---ALTSVVVTLWYRAP  184 (305)
T ss_dssp             CSCCCCCGGG---GGCCCCCCCTTCCH
T ss_pred             hhhhhhcccc---cCCCcccChhhcCc
Confidence            9998754322   23346789999998

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.91  E-value=2.3e-25  Score=215.05  Aligned_cols=137  Identities=24%  Similarity=0.400  Sum_probs=111.2

Q ss_pred             CCccccceeccCCceEEEEEEccCCcEEEEEEEeec-------------------------------cCccceeEEEEEe
Q 035895          385 DGFSANNLIGRGSFGSVYKARLQDGMEFAIKVFHFS-------------------------------CSNEDFRALVLEY  433 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~ey  433 (527)
                      +.|++.+.||+|+||+||+|+.++|+.||||++...                               +..++..++||||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            679999999999999999999999999999998431                               2234566899999


Q ss_pred             ccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 035895          434 TTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       434 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      +.++.+..+.. ....++..+...++.||+.||+|||   +++||||||||+|||++.++.+|++|||.|........  
T Consensus        82 ~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~--  155 (286)
T d1ob3a_          82 LDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--  155 (286)
T ss_dssp             CSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             ehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccCcc--
Confidence            99877766654 4467899999999999999999999   89999999999999999999999999999987653322  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                      ......+++.|+||
T Consensus       156 ~~~~~~~~~~y~~p  169 (286)
T d1ob3a_         156 KYTHEIVTLWYRAP  169 (286)
T ss_dssp             ------CCCTTCCH
T ss_pred             ccceecccchhhhH
Confidence            22234578889987

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.9e-25  Score=216.91  Aligned_cols=136  Identities=33%  Similarity=0.486  Sum_probs=108.3

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------c------CccceeEEEEEe
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------C------SNEDFRALVLEY  433 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------~------~~~~~~~lv~ey  433 (527)
                      .|+..++||+|+||+||+|+. .+|+.||||++...                         +      ..+.+.++||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey  100 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY  100 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence            488889999999999999996 57999999997431                         0      112346799999


Q ss_pred             ccCCcHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCC
Q 035895          434 TTNGSLEKVLY--SSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI-VAHLSDFGIAKLLTGED  510 (527)
Q Consensus       434 ~~~g~L~~~l~--~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~-~~kl~Dfg~a~~~~~~~  510 (527)
                      |++|.+..+..  .....+++.++..++.||+.||+|||   +++||||||||+|||++.++ .+||+|||+|+.+....
T Consensus       101 ~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~  177 (350)
T d1q5ka_         101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE  177 (350)
T ss_dssp             CSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS
T ss_pred             cCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccchhhccCCc
Confidence            98765444332  23456899999999999999999999   99999999999999999764 89999999998875433


Q ss_pred             CccceeccccccccccC
Q 035895          511 QSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       511 ~~~~~~~~~~t~~y~aP  527 (527)
                      .   .....||..|+||
T Consensus       178 ~---~~~~~gt~~y~aP  191 (350)
T d1q5ka_         178 P---NVSYICSRYYRAP  191 (350)
T ss_dssp             C---CCSCCSCTTSCCH
T ss_pred             c---cccccccccccCh
Confidence            2   2234688899997

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.90  E-value=1.2e-24  Score=214.16  Aligned_cols=133  Identities=25%  Similarity=0.399  Sum_probs=110.0

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec---------------------------c--CccceeEEEEEec
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS---------------------------C--SNEDFRALVLEYT  434 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~---------------------------~--~~~~~~~lv~ey~  434 (527)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++...                           +  ......++|||||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~  114 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  114 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence            5799999999999999999986 57899999997421                           1  1234578999999


Q ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCC-CcEEEeecccccccCCCCCcc
Q 035895          435 TNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDN-IVAHLSDFGIAKLLTGEDQSM  513 (527)
Q Consensus       435 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~-~~~kl~Dfg~a~~~~~~~~~~  513 (527)
                      ++|+|..+.    ..++..++..++.||+.||+|||   +++||||||||+|||++.+ +.+|++|||+|+.......  
T Consensus       115 ~~~~L~~~~----~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~--  185 (328)
T d3bqca1         115 NNTDFKQLY----QTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--  185 (328)
T ss_dssp             CSCBGGGTT----TSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC--
T ss_pred             CCCcHHHHh----cCCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeecccccceeccCCCc--
Confidence            999997653    35788889999999999999999   9999999999999999865 5699999999997754322  


Q ss_pred             ceeccccccccccC
Q 035895          514 TQTQTLAIIGYMAP  527 (527)
Q Consensus       514 ~~~~~~~t~~y~aP  527 (527)
                       .....+|..|+||
T Consensus       186 -~~~~~~t~~y~aP  198 (328)
T d3bqca1         186 -YNVRVASRYFKGP  198 (328)
T ss_dssp             -CCSCCSCGGGCCH
T ss_pred             -ccccccCccccCc
Confidence             2335678899998

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-24  Score=213.53  Aligned_cols=139  Identities=24%  Similarity=0.323  Sum_probs=108.8

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec------------------------------cCcc----ceeE
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS------------------------------CSNE----DFRA  428 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~------------------------------~~~~----~~~~  428 (527)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||++...                              +..+    ...+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35699999999999999999985 68999999998531                              0011    1224


Q ss_pred             EEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 035895          429 LVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTG  508 (527)
Q Consensus       429 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~  508 (527)
                      ++|||+.+|+|.+++...  .+++.....++.|++.||+|||   +++||||||||+|||++.++.+||+|||+|+....
T Consensus        87 ~l~~~~~~g~L~~~l~~~--~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~  161 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  161 (345)
T ss_dssp             EEEEECCCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEEeecCCchhhhhhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence            566778899999999754  5789899999999999999999   99999999999999999999999999999987643


Q ss_pred             CCCc-cceeccccccccccC
Q 035895          509 EDQS-MTQTQTLAIIGYMAP  527 (527)
Q Consensus       509 ~~~~-~~~~~~~~t~~y~aP  527 (527)
                      .... ......+||+.|+||
T Consensus       162 ~~~~~~~~~~~~gt~~y~aP  181 (345)
T d1pmea_         162 DHDHTGFLTEYVATRWYRAP  181 (345)
T ss_dssp             GGCBCCTTCCCCSCGGGCCG
T ss_pred             CCccceeeccccccceechH
Confidence            3221 122345689999998

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=212.11  Aligned_cols=139  Identities=29%  Similarity=0.424  Sum_probs=113.3

Q ss_pred             cCCccccceeccCCceEEEEEEc----cCCcEEEEEEEeec----------------------------------cCccc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL----QDGMEFAIKVFHFS----------------------------------CSNED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~----~~~~~vavK~~~~~----------------------------------~~~~~  425 (527)
                      .++|++.+.||+|+||+||+|+.    .+|+.||||++...                                  .....
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            46799999999999999999974    35889999987421                                  11234


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||+.+|+|.+++...+ .+.......++.|++.|++|+|   +++||||||||+||+++.++.+||+|||+|+.
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             ceeeeeecccccHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhh
Confidence            5679999999999999997654 3566778889999999999999   99999999999999999999999999999987


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +....... .....|++.|+||
T Consensus       179 ~~~~~~~~-~~~~~g~~~~~~p  199 (322)
T d1vzoa_         179 FVADETER-AYDFCGTIEYMAP  199 (322)
T ss_dssp             CCGGGGGG-GCGGGSCCTTCCH
T ss_pred             hccccccc-ccccccccccchh
Confidence            75332221 2235678889987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=198.01  Aligned_cols=177  Identities=24%  Similarity=0.204  Sum_probs=127.9

Q ss_pred             CCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccC
Q 035895          165 KLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWS  244 (527)
Q Consensus       165 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~  244 (527)
                      ++++|+|++|+|++..+..|.++++|++|+|++|+|+.. | .++.+++|++|+|++|+++.+|..+..++.|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccccccccccccccccccccccccccc
Confidence            445555555555444344455555555555555555432 1 23445555555555555555555555555556666666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCc
Q 035895          245 NLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIP  324 (527)
Q Consensus       245 n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  324 (527)
                      |.+.+..+..+..+.++++|++++|.+....+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccC
Confidence            6555555667788899999999999999888888999999999999999999888899999999999999999998 567


Q ss_pred             cchhhhccCCeeEeeeeeee
Q 035895          325 LSLEKLLYLNILLIVVVILA  344 (527)
Q Consensus       325 ~~~~~l~~L~~L~~~~~~~~  344 (527)
                      ..+..+..|+.|+++.+++.
T Consensus       189 ~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCCCSEEECCSCCBC
T ss_pred             hhHCCCCCCCEEEecCCCCC
Confidence            77788999999998877653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=208.87  Aligned_cols=140  Identities=25%  Similarity=0.408  Sum_probs=109.6

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c--------Cc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C--------SN  423 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~--------~~  423 (527)
                      .+.|++.+.||+|+||+||+|+. ++|+.||||++...                               +        ..
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            57799999999999999999996 57999999987421                               0        01


Q ss_pred             cceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 035895          424 EDFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIA  503 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a  503 (527)
                      ++..++|||||+++.+.... .....++......++.|++.||+|||   +++|+||||||+|||++.++.+|++|||+|
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~-~~~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg~~  164 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLS-NVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA  164 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHT-CTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEeccCCCccchhh-hcccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeeccee
Confidence            23467999999987766443 34456788888899999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCCc--cceeccccccccccC
Q 035895          504 KLLTGEDQS--MTQTQTLAIIGYMAP  527 (527)
Q Consensus       504 ~~~~~~~~~--~~~~~~~~t~~y~aP  527 (527)
                      +.+......  ......+||++|+||
T Consensus       165 ~~~~~~~~~~~~~~~~~~gT~~Y~aP  190 (318)
T d3blha1         165 RAFSLAKNSQPNRYTNRVVTLWYRPP  190 (318)
T ss_dssp             EECCC-----CCCCCSCCSCGGGCCH
T ss_pred             eecccccccccccccceecCHHHhhH
Confidence            876533211  112235689999998

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-23  Score=209.07  Aligned_cols=133  Identities=26%  Similarity=0.334  Sum_probs=105.3

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCc------cc
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSN------ED  425 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~------~~  425 (527)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||+++..                               +..      ..
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            46799999999999999999985 57999999997521                               111      12


Q ss_pred             eeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          426 FRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       426 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||||| +++|..+...  ..+++.....++.|++.||+|||   +++||||||||+|||++.++.+|++|||+|+.
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~  170 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  170 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecc-cccHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccceec
Confidence            358999999 5688887754  35889999999999999999999   99999999999999999999999999999998


Q ss_pred             cCCCCCccceeccccccccccC
Q 035895          506 LTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       506 ~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      .....     +...+|+.||||
T Consensus       171 ~~~~~-----~~~~~t~~y~aP  187 (346)
T d1cm8a_         171 ADSEM-----TGYVVTRWYRAP  187 (346)
T ss_dssp             CCSSC-----CSSCSCGGGCCT
T ss_pred             cCCcc-----ccccccccccCH
Confidence            75332     345688999998

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=202.61  Aligned_cols=137  Identities=23%  Similarity=0.348  Sum_probs=112.1

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------cCccceeEEEEE
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------CSNEDFRALVLE  432 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~~~~~~~~lv~e  432 (527)
                      +.|++.+.||+|+||+||+|+. .+++.||||+++..                               +...+..++|||
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            5799999999999999999996 57899999998531                               223456679999


Q ss_pred             eccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 035895          433 YTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLLTGEDQS  512 (527)
Q Consensus       433 y~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~~~~~~~  512 (527)
                      |+.++++..++... ..+++..+..++.|++.||+|||   +++||||||||+|||++.++.+|++|||.|+........
T Consensus        82 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~  157 (292)
T d1unla_          82 FCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             CCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC
T ss_pred             eccccccccccccc-cccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCCCcc
Confidence            99999998877644 46788888999999999999999   999999999999999999999999999999987543321


Q ss_pred             cceeccccccccccC
Q 035895          513 MTQTQTLAIIGYMAP  527 (527)
Q Consensus       513 ~~~~~~~~t~~y~aP  527 (527)
                        .....++..|+||
T Consensus       158 --~~~~~~~~~~~~p  170 (292)
T d1unla_         158 --YSAEVVTLWYRPP  170 (292)
T ss_dssp             --CCSCCSCGGGCCH
T ss_pred             --ceeeccccchhhh
Confidence              1223456667765

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-23  Score=206.76  Aligned_cols=134  Identities=25%  Similarity=0.365  Sum_probs=107.4

Q ss_pred             cCCccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc------------------------------------Cccce
Q 035895          384 TDGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC------------------------------------SNEDF  426 (527)
Q Consensus       384 ~~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~------------------------------------~~~~~  426 (527)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||++....                                    .++..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            46799999999999999999985 679999999974210                                    01123


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .+++|||+.+|+|.+++..  ..++..++..++.||+.||+|||   +++|+||||||+|||++.++.+|++|||+|...
T Consensus        97 ~~~i~~~~~gg~L~~~~~~--~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~  171 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHT  171 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----CC
T ss_pred             eEEEEEeecCCchhhhccc--ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhccc
Confidence            3577888999999999854  35889999999999999999999   999999999999999999999999999999865


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ...     .....||..|+||
T Consensus       172 ~~~-----~~~~~g~~~y~ap  187 (348)
T d2gfsa1         172 DDE-----MTGYVATRWYRAP  187 (348)
T ss_dssp             TGG-----GSSSCHHHHTSCH
T ss_pred             Ccc-----cccccccccccCc
Confidence            422     2234578889987

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=201.32  Aligned_cols=133  Identities=25%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             CCccccceeccCCceEEEEEEc-cCCcEEEEEEEeec-------------------------------c------Cccce
Q 035895          385 DGFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFS-------------------------------C------SNEDF  426 (527)
Q Consensus       385 ~~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~-------------------------------~------~~~~~  426 (527)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++...                               +      .....
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            6799999999999999999986 47999999998521                               0      12246


Q ss_pred             eEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 035895          427 RALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAKLL  506 (527)
Q Consensus       427 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~~  506 (527)
                      .++|||||.++.+.. +.   ..+++.+...++.||+.||+|||   +++|+||||||+|||++.++.+|++|||+++..
T Consensus        97 ~~iv~Ey~~~~l~~~-~~---~~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~  169 (355)
T d2b1pa1          97 VYLVMELMDANLCQV-IQ---MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  169 (355)
T ss_dssp             EEEEEECCSEEHHHH-HT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             eEEEEeccchHHHHh-hh---cCCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhhhcc
Confidence            789999998765543 32   35788889999999999999999   999999999999999999999999999999876


Q ss_pred             CCCCCccceeccccccccccC
Q 035895          507 TGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       507 ~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      ....   ..+...+|+.|+||
T Consensus       170 ~~~~---~~~~~~~t~~y~aP  187 (355)
T d2b1pa1         170 GTSF---MMTPYVVTRYYRAP  187 (355)
T ss_dssp             --------------CCTTCCH
T ss_pred             cccc---ccccccccccccCh
Confidence            4322   23345688999998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.7e-20  Score=172.10  Aligned_cols=217  Identities=13%  Similarity=0.069  Sum_probs=136.9

Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccccc-CcccccCCCCCCEEec
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS-ISITLGKLQKLQFLSF  171 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l  171 (527)
                      .+.++.+++.++. +|..+   +.++++|+|++|.|+.+.+..|.++++|++|++++|.+... .+..|.++++++.+++
T Consensus        10 ~~~i~c~~~~l~~-iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTE-IPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSS-CCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCC-cCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            3678888888874 45433   34688888888888877777788888888888888887653 3556778888888876


Q ss_pred             cC-cccccccChhhhcCcccCeeeeecccCCCCCCc-cccCCccCceeeCCCCCCCCCchh-hhCC-CCccEEEccCCcc
Q 035895          172 RG-NELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPT-CFGNLTALRNLHLDSNELTSIPSI-LWNL-KDILYLDFWSNLF  247 (527)
Q Consensus       172 ~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~lp~~-~~~l-~~L~~l~l~~n~~  247 (527)
                      .. |.+....+..|.++++|+.|++++|++....+. .+..+..+..+..+++.+..++.. +..+ ..+..+++.+|++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            54 677767777788888888888888888654332 234455566666677777766532 2222 2455566666665


Q ss_pred             cccCCccccCCCCCCEE-EccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeC
Q 035895          248 VGPLPSKIGNLKVLTRI-DFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDL  314 (527)
Q Consensus       248 ~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  314 (527)
                      ....+..+. ...+..+ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       166 ~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         166 QEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            543333332 2333333 34555555444445566666666666666665444445555555555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=169.22  Aligned_cols=218  Identities=17%  Similarity=0.097  Sum_probs=162.6

Q ss_pred             eEEcccccccCCCCCCcccccCCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccc-cchhhcCCcCCcE
Q 035895           66 ELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGG-ISEEIGNLTDLIS  144 (527)
Q Consensus        66 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  144 (527)
                      .++.++..++.+|..++        +++++|||++|+|+.+.+..|.++. +|++|++++|.+... .+..|..++++++
T Consensus        12 ~i~c~~~~l~~iP~~l~--------~~l~~L~Ls~n~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--------RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--------SCCSEEEEESCCCCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             EEEEeCCCCCCcCCCCC--------CCCCEEECcCCcCCccChhHhhccc-hhhhhhhccccccceeecccccccccccc
Confidence            45556666666655431        4678888888888876556666664 788888888887653 4567888888888


Q ss_pred             EEeec-CcccccCcccccCCCCCCEEeccCcccccccCh-hhhcCcccCeeeeecccCCCCCCccccCCc-cCceeeCCC
Q 035895          145 IDLGG-NKLNGSISITLGKLQKLQFLSFRGNELEGSIPN-VLCHLAVLFQLDLRGNKLSGSIPTCFGNLT-ALRNLHLDS  221 (527)
Q Consensus       145 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~  221 (527)
                      +.+.. |++....+..|.++++|+.|++++|.+....+. .+..+..+..+..+++.+....+..|..++ .++.|++++
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            88764 677777778888899999999999888643332 334556666667778888877777787765 788899999


Q ss_pred             CCCCCCchhhhCCCCccEEE-ccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccc
Q 035895          222 NELTSIPSILWNLKDILYLD-FWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH  292 (527)
Q Consensus       222 N~l~~lp~~~~~l~~L~~l~-l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  292 (527)
                      |+++.++...++...+..+. +.+|++....+..|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus       163 n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         163 NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999888777777776665 566667665566789999999999999999876666788888887776644

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=1.9e-20  Score=168.78  Aligned_cols=109  Identities=16%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             cccceeccCCceEEEEEEccCCcEEEEEEEeeccC-----------------------------------c--------c
Q 035895          388 SANNLIGRGSFGSVYKARLQDGMEFAIKVFHFSCS-----------------------------------N--------E  424 (527)
Q Consensus       388 ~~~~~lg~G~~g~vy~~~~~~~~~vavK~~~~~~~-----------------------------------~--------~  424 (527)
                      .+.+.||+|+||+||+|+..+|+.||||+++....                                   .        .
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            45689999999999999988999999998642100                                   0        0


Q ss_pred             ceeEEEEEeccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          425 DFRALVLEYTTNGSLEKVLYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       425 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||||++++.+.+        ++......++.|++++++|+|   +++|+||||||+|||++++ .++++|||.|+
T Consensus        83 ~~~~lvme~~~~~~~~~--------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-~~~liDFG~a~  150 (191)
T d1zara2          83 EGNAVLMELIDAKELYR--------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-GIWIIDFPQSV  150 (191)
T ss_dssp             ETTEEEEECCCCEEGGG--------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-EEEECCCTTCE
T ss_pred             cCCEEEEEeeccccccc--------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-CEEEEECCCcc
Confidence            12258999999866543        222334578999999999999   9999999999999999965 58999999998


Q ss_pred             ccCC
Q 035895          505 LLTG  508 (527)
Q Consensus       505 ~~~~  508 (527)
                      ....
T Consensus       151 ~~~~  154 (191)
T d1zara2         151 EVGE  154 (191)
T ss_dssp             ETTS
T ss_pred             cCCC
Confidence            7643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=5.2e-19  Score=163.87  Aligned_cols=203  Identities=22%  Similarity=0.346  Sum_probs=104.0

Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCc
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN  174 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  174 (527)
                      .++++.+++++..+  ..++. +|+.|++++|.|+..  +.+..+++|++|++++|++++..+  +..+++|+.+++++|
T Consensus        23 ~~~l~~~~~~d~~~--~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEEC--HHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCCcCC--HHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34455555554432  22332 566666666666543  235666666666666666654332  556666666666666


Q ss_pred             ccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCcc
Q 035895          175 ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK  254 (527)
Q Consensus       175 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~  254 (527)
                      .++. + +.+.+++.|+.++++++...+.  ..+...+.++.+.++++.+...+. +...++|++|++++|.+...  ..
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh-hccccccccccccccccccc--hh
Confidence            6552 2 2355566666666666655432  224445556666666665554332 23344444444444443321  12


Q ss_pred             ccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCC
Q 035895          255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS  315 (527)
Q Consensus       255 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls  315 (527)
                      ++++++|+.|++++|++.+ +| .+.++++|++|++++|++++..|  ++++++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            4455555555555555543 22 24555555555555555553321  4455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=6e-18  Score=166.66  Aligned_cols=262  Identities=23%  Similarity=0.274  Sum_probs=129.4

Q ss_pred             hhccc-CCCceeecCchhhhcCCCCCEEEccccccccccc---cccceEEcccccccCCCCCCcccccCCCCCCCCEEEc
Q 035895           23 ICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVLGRLS---SIVDELSLSDNYLTSSTPELSFLSSMSNCKYLKKLDI   98 (527)
Q Consensus        23 ~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~---~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L   98 (527)
                      +..+| ++|.++.+++    .+++|++|+|++|.+.. +|   ..++.|++++|.++.++. +        .+.|++||+
T Consensus        40 l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~l~~n~l~~l~~-l--------p~~L~~L~L  105 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSD-L--------PPLLEYLGV  105 (353)
T ss_dssp             CSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCS-C--------CTTCCEEEC
T ss_pred             CCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcc-cccchhhhhhhhhhhcccchhhh-h--------ccccccccc
Confidence            34455 5555554432    23455666666665542 22   235556666665554321 0        124556666


Q ss_pred             ccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCccccc
Q 035895           99 SRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEG  178 (527)
Q Consensus        99 s~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  178 (527)
                      ++|.+..+ |. +..+ .+|+.|++++|.+.....    ....+..+.+..+...  ....+..++.++.|++++|....
T Consensus       106 ~~n~l~~l-p~-~~~l-~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLEKL-PE-LQNS-SFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCSSC-CC-CTTC-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccc-cc-hhhh-ccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            66665542 32 2222 246666666555543221    1234445555444443  22345667777788877776653


Q ss_pred             ccC------------------hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEE
Q 035895          179 SIP------------------NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYL  240 (527)
Q Consensus       179 ~~p------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l  240 (527)
                      ...                  ..+..++.|+.+++++|.... .|.   ...++..+.+.+|.+...+...   ..+...
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~~---~~l~~~  249 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPELP---QSLTFL  249 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccc---cccccccccccccccccccccc---cccccc
Confidence            211                  112233444444444444332 111   1223334444444443322211   112222


Q ss_pred             EccCCcccc----------------cCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCC
Q 035895          241 DFWSNLFVG----------------PLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFD  304 (527)
Q Consensus       241 ~l~~n~~~~----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  304 (527)
                      ++..+.+.+                .++.....+++|++|++++|++. .+|.   .+++|+.|+|++|+|+ .+|..  
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~--  322 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL--  322 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC--
T ss_pred             ccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc--
Confidence            222221111                11112233567888888888887 4554   3567888888888887 45543  


Q ss_pred             CCCCCCEEeCCCCccccc
Q 035895          305 DLVSLESLDLSNNNLSEI  322 (527)
Q Consensus       305 ~l~~L~~L~ls~N~l~~~  322 (527)
                       +++|+.|++++|+++.+
T Consensus       323 -~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         323 -PQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             -CTTCCEEECCSSCCSSC
T ss_pred             -cCCCCEEECcCCcCCCC
Confidence             45788888888888753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.8e-19  Score=164.14  Aligned_cols=205  Identities=21%  Similarity=0.317  Sum_probs=170.0

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      +..++++.+.+++..  .+..+.+|++|++.+|.|+.. + .+..+++|+.|++++|++++..|  +..+++|+.+++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            344567778777543  456788999999999999864 3 58899999999999999986543  89999999999999


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChh
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPT  277 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  277 (527)
                      |.++. + ..+..+++|+.++++++....++. +.....+..+.++.+.+...  ..+..+++|++|++++|.+.+.  .
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~  167 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--T  167 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             ccccc-c-ccccccccccccccccccccccch-hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--h
Confidence            99984 3 358899999999999999988754 45567888899988877643  3477889999999999998743  3


Q ss_pred             hhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCeeEee
Q 035895          278 TIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNILLIV  339 (527)
Q Consensus       278 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~~~  339 (527)
                      .+.++++|++|++++|++++. + .|+++++|+.|++++|+++++.|  +..++.|+.|+++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            489999999999999999854 3 38899999999999999998654  7889999999876

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.6e-19  Score=179.55  Aligned_cols=135  Identities=20%  Similarity=0.261  Sum_probs=101.5

Q ss_pred             CccccceeccCCceEEEEEEc-cCCcEEEEEEEeecc-----------------------------------------Cc
Q 035895          386 GFSANNLIGRGSFGSVYKARL-QDGMEFAIKVFHFSC-----------------------------------------SN  423 (527)
Q Consensus       386 ~~~~~~~lg~G~~g~vy~~~~-~~~~~vavK~~~~~~-----------------------------------------~~  423 (527)
                      .|++.+.||+|+||+||+|+. .+|+.||||+++...                                         ..
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~   93 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   93 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecc
Confidence            399999999999999999986 579999999975310                                         01


Q ss_pred             cceeEEEEEeccCCcHHHH--HHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeeeCCCC------cE
Q 035895          424 EDFRALVLEYTTNGSLEKV--LYSSNYILDILQRLNIMIDVTSALEYLHFGYSTPIIHCDLKPHNKLLDDNI------VA  495 (527)
Q Consensus       424 ~~~~~lv~ey~~~g~L~~~--l~~~~~~~~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~nill~~~~------~~  495 (527)
                      ....+.+|+++..+.....  .......+.......++.||+.|++|||+  ..+|+||||||+|||++.++      .+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          94 PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCccccccee
Confidence            1233466777665543222  22334567888889999999999999992  38899999999999997654      49


Q ss_pred             EEeecccccccCCCCCccceeccccccccccC
Q 035895          496 HLSDFGIAKLLTGEDQSMTQTQTLAIIGYMAP  527 (527)
Q Consensus       496 kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  527 (527)
                      +++|||.|+.....     ....+||+.|+||
T Consensus       172 kl~dfg~s~~~~~~-----~~~~~gt~~y~aP  198 (362)
T d1q8ya_         172 KIADLGNACWYDEH-----YTNSIQTREYRSP  198 (362)
T ss_dssp             EECCCTTCEETTBC-----CCSCCSCGGGCCH
T ss_pred             eEeecccccccccc-----cccccccccccCh
Confidence            99999999876432     1235688999998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=2e-19  Score=162.09  Aligned_cols=133  Identities=22%  Similarity=0.312  Sum_probs=104.9

Q ss_pred             CCEEEcccCCCCcccChhHhhccccccEEEcccCcccc-ccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEec
Q 035895           93 LKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISG-GISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSF  171 (527)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  171 (527)
                      .+++|.++++++. +|..+   +.++++|+|++|+|++ ..+..|.++++|++|+|++|++.+..+..|..+++|+.|++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcCc-cCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3567777777775 34432   3467777777777764 44666788888888888888888888888888888888888


Q ss_pred             cCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCch
Q 035895          172 RGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPS  229 (527)
Q Consensus       172 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~  229 (527)
                      ++|+|+...|.+|.++++|++|+|++|+|+++.|++|..+++|++|+|++|.+...+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            8888887777888888888888888888888888888888999999999988876544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.2e-18  Score=159.22  Aligned_cols=162  Identities=27%  Similarity=0.388  Sum_probs=70.5

Q ss_pred             cccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          117 SLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       117 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +|+.|++++|.++...  .+..+++|++|++++|++++..  .++.+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            3455555555444321  2344444444554444444322  13344444444444444442 22 23444444444444


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      +|.+..  ...+..++.++.+++++|.++..+                         .+..+++|+++++++|++++ ++
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~-------------------------~~~~l~~L~~l~l~~n~l~~-i~  172 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITDIT-------------------------VLSRLTKLDTLSLEDNQISD-IV  172 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-------------------------GGGGCTTCSEEECCSSCCCC-CG
T ss_pred             cccccc--cccccccccccccccccccccccc-------------------------cccccccccccccccccccc-cc
Confidence            444332  112334444444444444443321                         23334455555555555543 22


Q ss_pred             hhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCC
Q 035895          277 TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLS  315 (527)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls  315 (527)
                       .+.++++|+.|++++|+++. +| .|.++++|+.|+|+
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence             14455555555555555542 22 34555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=5.4e-19  Score=160.23  Aligned_cols=176  Identities=28%  Similarity=0.426  Sum_probs=98.9

Q ss_pred             EcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCC
Q 035895          122 WMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLS  201 (527)
Q Consensus       122 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  201 (527)
                      .++.+.+++.++  ...++++++|++++|.++..  ..++.+++|++|++++|++++..|  +.++++|+.|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            445555544332  23445566666666665532  124455555555555555553222  555555555555555554


Q ss_pred             CCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhc
Q 035895          202 GSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQG  281 (527)
Q Consensus       202 ~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  281 (527)
                      .. + .+.+++.|+.|++++|.+..++                         .+..+++|+.|++++|++.. ++ .+..
T Consensus        98 ~~-~-~l~~l~~L~~L~l~~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~-~~-~l~~  148 (199)
T d2omxa2          98 DI-T-PLANLTNLTGLTLFNNQITDID-------------------------PLKNLTNLNRLELSSNTISD-IS-ALSG  148 (199)
T ss_dssp             CC-G-GGTTCTTCSEEECCSSCCCCCG-------------------------GGTTCTTCSEEECCSSCCCC-CG-GGTT
T ss_pred             cc-c-cccccccccccccccccccccc-------------------------ccchhhhhHHhhhhhhhhcc-cc-cccc
Confidence            32 1 2455555555555555544432                         34556677777777777653 33 4667


Q ss_pred             CCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccCccchhhhccCCee
Q 035895          282 LKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEIIPLSLEKLLYLNIL  336 (527)
Q Consensus       282 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  336 (527)
                      +++|++|++.+|++++..  .|.++++|+.|++++|+++++.  .+..+++|+.|
T Consensus       149 ~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             cccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            777777777777776432  3667777777777777776642  35566666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=5.7e-19  Score=159.12  Aligned_cols=174  Identities=21%  Similarity=0.249  Sum_probs=122.0

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCcccc-cCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNG-SISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      .+.++.++++++. +|..+.  +++++|+|++|+|++ ..+..|..+++|+.|++++|.+....+..|..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            5677888888874 344332  567888888888865 445567778888888888888877777777778888888888


Q ss_pred             cccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCCh
Q 035895          197 GNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIP  276 (527)
Q Consensus       197 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  276 (527)
                      +|+|+.+.|.+|.++++|++|+|++|+|+.+|                       |+.|..+++|++|+|++|.+....+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-----------------------~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-----------------------PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-----------------------TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccC-----------------------HHHhcCCcccccccccccccccccc
Confidence            88887777777888888888888777777665                       3456677778888888888765433


Q ss_pred             hhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccc
Q 035895          277 TTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  321 (527)
                      ..+ -...++.+.+..|.++...|..+   ..++.++|+.|++.-
T Consensus       144 ~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         144 LAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             GHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             hHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence            221 11235566677777776666554   456677888888753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=4.8e-18  Score=155.18  Aligned_cols=164  Identities=24%  Similarity=0.321  Sum_probs=107.4

Q ss_pred             CCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEcc
Q 035895          164 QKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFW  243 (527)
Q Consensus       164 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~  243 (527)
                      .+|+.|++++|.++.. + .+..+++|++|++++|+|++..  .++.+++|++|++++|+++.+| .+..+++|+.++++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc-cccccccccccccc
Confidence            3444444444444321 1 2344445555555555554322  1344555555555555555554 24445555555555


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccceeecCCCCCCCCCCCEEeCCCCcccccC
Q 035895          244 SNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQGSIPNSFDDLVSLESLDLSNNNLSEII  323 (527)
Q Consensus       244 ~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  323 (527)
                      +|.+..  ...+..++.++.+++++|.+++  +..+..+++|+++++++|++++..  .+.++++|+.|++++|+++++ 
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l-  193 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-  193 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC-
T ss_pred             cccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC-
Confidence            554432  2346778889999999999874  346788999999999999998643  388999999999999999875 


Q ss_pred             ccchhhhccCCeeEeee
Q 035895          324 PLSLEKLLYLNILLIVV  340 (527)
Q Consensus       324 p~~~~~l~~L~~L~~~~  340 (527)
                      | .+..+++|+.|+++.
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            4 588999999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.6e-17  Score=150.37  Aligned_cols=178  Identities=25%  Similarity=0.360  Sum_probs=109.1

Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCc
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGN  174 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  174 (527)
                      .+.++.+.+++.++.  ..+ .+++.|++++|.++..  +.++.+++|++|++++|++++..+  ++++++|+.|++++|
T Consensus        22 ~~~l~~~~~~~~~~~--~~l-~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ--TDL-DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEECH--HHH-TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccCH--HHh-cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            344556666554332  223 2577777777777643  346677788888888888776443  777888888888888


Q ss_pred             ccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCcc
Q 035895          175 ELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSK  254 (527)
Q Consensus       175 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~  254 (527)
                      .+.. ++ .+.+++.|+.|++++|.+...  ..+..+++|+.|++++|++..+|. +..+++++.|++.+|.+.+.  ..
T Consensus        95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l--~~  167 (199)
T d2omxa2          95 QIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDL--KP  167 (199)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC--GG
T ss_pred             cccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccccc-ccccccccccccccccccCC--cc
Confidence            7763 33 377788888888888877643  346777888888888888776652 44444455555544444332  12


Q ss_pred             ccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEE
Q 035895          255 IGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFL  288 (527)
Q Consensus       255 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  288 (527)
                      ++++++|++|++++|++++ ++ .+.++++|+.|
T Consensus       168 l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            4455555555555555543 22 34555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=9.5e-16  Score=150.59  Aligned_cols=257  Identities=26%  Similarity=0.297  Sum_probs=176.5

Q ss_pred             hhhcchhccc-CCCceeecCchhhhcCCCCCEEEccccccc--cccccccceEEcccccccCCCCCCcccccCCCCCCCC
Q 035895           18 DVCYRICTID-SQNKLVGIVSITIFNLSTLKVFDVDNNYVL--GRLSSIVDELSLSDNYLTSSTPELSFLSSMSNCKYLK   94 (527)
Q Consensus        18 ~~~~~~~~~~-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~--~~~~~~l~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~   94 (527)
                      +..+.+..++ ++|+|+.++ ..   +.+|+.|++++|.+.  ..+|+.++.|++++|.++.++.       +..+++|+
T Consensus        55 ~~~~~L~~L~Ls~N~l~~lp-~~---~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~-------~~~l~~L~  123 (353)
T d1jl5a_          55 ELPPHLESLVASCNSLTELP-EL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-------LQNSSFLK  123 (353)
T ss_dssp             SCCTTCSEEECCSSCCSSCC-CC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCC-------CTTCTTCC
T ss_pred             CCCCCCCEEECCCCCCcccc-cc---hhhhhhhhhhhcccchhhhhccccccccccccccccccc-------hhhhccce
Confidence            4556788888 999999764 33   568999999999875  3455679999999999987643       46789999


Q ss_pred             EEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCccccc------------------C
Q 035895           95 KLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS------------------I  156 (527)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~  156 (527)
                      .|++++|.+....+ .    ...+..+.+..+...  ....+..++.++.+++++|.+...                  .
T Consensus       124 ~L~l~~~~~~~~~~-~----~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~  196 (353)
T d1jl5a_         124 IIDVDNNSLKKLPD-L----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE  196 (353)
T ss_dssp             EEECCSSCCSCCCC-C----CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred             eecccccccccccc-c----cccccchhhcccccc--ccccccccccceecccccccccccccccccccccccccccccc
Confidence            99999999886432 2    235667776666543  234456677777777777765421                  1


Q ss_pred             cccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCC---------------
Q 035895          157 SITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDS---------------  221 (527)
Q Consensus       157 ~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~---------------  221 (527)
                      ...+..++.|+.+++++|.... .|.   ...++..+.+.++.+... +...   ..+...++..               
T Consensus       197 ~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~~~---~~l~~~~~~~~~~~~l~~l~~~~~~  268 (353)
T d1jl5a_         197 LPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PELP---QSLTFLDVSENIFSGLSELPPNLYY  268 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCCC---TTCCEEECCSSCCSEESCCCTTCCE
T ss_pred             cccccccccccccccccccccc-ccc---cccccccccccccccccc-cccc---ccccccccccccccccccccchhcc
Confidence            1235678899999999998763 443   334566777777777632 2222   2233333333               


Q ss_pred             -----CCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          222 -----NELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       222 -----N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                           +.+..++   ..+++|++|++++|++. .+|..   +++|++|++++|+++ .+|..   +.+|++|++++|+++
T Consensus       269 ~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         269 LNASSNEIRSLC---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             EECCSSCCSEEC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             cccccCcccccc---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence                 3333332   23468999999999987 45643   678999999999998 46643   568999999999998


Q ss_pred             eecCCCCCCCCCCCEEeCC
Q 035895          297 GSIPNSFDDLVSLESLDLS  315 (527)
Q Consensus       297 ~~~p~~~~~l~~L~~L~ls  315 (527)
                       .+|+..   .+|+.|.+.
T Consensus       338 -~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         338 -EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             -SCCCCC---TTCCEEECC
T ss_pred             -CCCccc---cccCeeECc
Confidence             567643   356776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.7e-16  Score=148.64  Aligned_cols=199  Identities=21%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             ccEEEcccCccccccchhhcCCcCCcEEEeecCccccc-CcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeee
Q 035895          118 LEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGS-ISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLR  196 (527)
Q Consensus       118 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  196 (527)
                      +..+.+++..+..... ......+|++||++++.++.. +...+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            3444444444432221 222344566666666655432 23345556666666666666655555556666666666666


Q ss_pred             cc-cCCCC-CCccccCCccCceeeCCCC-CCCC--CchhhhC-CCCccEEEccCCc--ccc-cCCccccCCCCCCEEEcc
Q 035895          197 GN-KLSGS-IPTCFGNLTALRNLHLDSN-ELTS--IPSILWN-LKDILYLDFWSNL--FVG-PLPSKIGNLKVLTRIDFS  267 (527)
Q Consensus       197 ~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~--lp~~~~~-l~~L~~l~l~~n~--~~~-~~p~~~~~l~~L~~L~Ls  267 (527)
                      ++ .++.. +...+.++++|++|+++++ .++.  ++..+.. .+.|+.|++++..  +.. .+...+..+++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            63 33311 1112344566666666664 3332  2222222 3456666665432  211 122223456777788887


Q ss_pred             CC-CCCCCChhhhhcCCCCCEEEcccc-cceeecCCCCCCCCCCCEEeCCCC
Q 035895          268 RN-NLLGDIPTTIQGLKSLQFLSLGHN-RLQGSIPNSFDDLVSLESLDLSNN  317 (527)
Q Consensus       268 ~N-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~ls~N  317 (527)
                      +| .+++.....+..+++|++|+++++ .+++.....++.+++|+.|+++++
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            75 355555666777778888888774 566555556677778888888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=131.94  Aligned_cols=128  Identities=20%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             ccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCE
Q 035895          208 FGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQF  287 (527)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  287 (527)
                      |.++.++++|+|++|+|+.+|..+..+++|+.|++++|.+...  +.+..+++|++|++++|+++...+..+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4455556666666666666655445556666666666665533  23677888888888888888666666778888888


Q ss_pred             EEcccccceeecC-CCCCCCCCCCEEeCCCCcccccCc---cchhhhccCCeeE
Q 035895          288 LSLGHNRLQGSIP-NSFDDLVSLESLDLSNNNLSEIIP---LSLEKLLYLNILL  337 (527)
Q Consensus       288 L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~  337 (527)
                      |++++|+++.... ..+..+++|+.|++++|+++....   ..+..+++|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888874322 457788889999999998876542   3567777887776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-16  Score=163.22  Aligned_cols=321  Identities=17%  Similarity=0.150  Sum_probs=177.2

Q ss_pred             chhccc-CCCceeecC-chhhhcCCCCCEEEcccccccc----cc------ccccceEEcccccccCCCCCCcccccC-C
Q 035895           22 RICTID-SQNKLVGIV-SITIFNLSTLKVFDVDNNYVLG----RL------SSIVDELSLSDNYLTSSTPELSFLSSM-S   88 (527)
Q Consensus        22 ~~~~~~-s~N~l~~~~-~~~~~~l~~L~~L~Ls~N~~~~----~~------~~~l~~L~Ls~N~l~~~~~~~~~~~~~-~   88 (527)
                      .+..+| ++|+++... ...+..++++++|+|++|.++.    .+      .+.+++|+|++|.|+..... .+...+ .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~-~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-CVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH-HHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH-HHHHHHhc
Confidence            345556 667776543 3345666777777777776541    01      12366677777766421000 000111 1


Q ss_pred             CCCCCCEEEcccCCCCccc----ChhHhhccccccEEEcccCccccccchh-----------------------------
Q 035895           89 NCKYLKKLDISRNPLDGFL----PRVVGNFSQSLEFIWMSDCNISGGISEE-----------------------------  135 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-----------------------------  135 (527)
                      ...+|++|+|++|+++...    +..+... ++|+.|++++|.++......                             
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcc-ccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence            2245677777777665421    1222222 35677777776654211100                             


Q ss_pred             ----hcCCcCCcEEEeecCcccccC----cccc-cCCCCCCEEeccCcccccc----cChhhhcCcccCeeeeecccCCC
Q 035895          136 ----IGNLTDLISIDLGGNKLNGSI----SITL-GKLQKLQFLSFRGNELEGS----IPNVLCHLAVLFQLDLRGNKLSG  202 (527)
Q Consensus       136 ----~~~l~~L~~L~L~~N~l~~~~----~~~~-~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  202 (527)
                          +.....++.++++++.+....    ...+ ..-.....+++..+.+...    ....+.....++.+++++|++..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence                111223444444444332100    0000 1112334455554443311    11234455677888888887632


Q ss_pred             -----CCCccccCCccCceeeCCCCCCCCCc-----hhhhCCCCccEEEccCCcccccCCcc-----ccCCCCCCEEEcc
Q 035895          203 -----SIPTCFGNLTALRNLHLDSNELTSIP-----SILWNLKDILYLDFWSNLFVGPLPSK-----IGNLKVLTRIDFS  267 (527)
Q Consensus       203 -----~~p~~~~~l~~L~~L~L~~N~l~~lp-----~~~~~l~~L~~l~l~~n~~~~~~p~~-----~~~l~~L~~L~Ls  267 (527)
                           ..+..+.....++.+++++|.+...+     ..+...+.+..++++.|.+.......     ......|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence                 12333455678899999999887532     23456778888999888775321111     1234578899999


Q ss_pred             CCCCCCCChh----hhhcCCCCCEEEcccccceee----cCCCC-CCCCCCCEEeCCCCccccc----CccchhhhccCC
Q 035895          268 RNNLLGDIPT----TIQGLKSLQFLSLGHNRLQGS----IPNSF-DDLVSLESLDLSNNNLSEI----IPLSLEKLLYLN  334 (527)
Q Consensus       268 ~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~----~p~~~-~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~  334 (527)
                      +|.++.....    .+...++|++|+|++|+++..    ++..+ ...+.|++|+|++|+++..    ++..+..++.|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            9888754333    345667899999999988642    22222 2456799999999998753    344566778899


Q ss_pred             eeEeeeeeee
Q 035895          335 ILLIVVVILA  344 (527)
Q Consensus       335 ~L~~~~~~~~  344 (527)
                      .|+++.+.+.
T Consensus       401 ~L~Ls~N~i~  410 (460)
T d1z7xw1         401 ELDLSNNCLG  410 (460)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCcCC
Confidence            9998877664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-14  Score=119.69  Aligned_cols=80  Identities=26%  Similarity=0.314  Sum_probs=41.1

Q ss_pred             EEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCC
Q 035895          144 SIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNE  223 (527)
Q Consensus       144 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  223 (527)
                      +|+|++|+++.. + .++.+++|++|++++|+|+ .+|+.|..+++|+.|++++|+|++. | .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            455555555532 2 2455555555555555554 3444455555555555555555532 2 25555555555555555


Q ss_pred             CCCCc
Q 035895          224 LTSIP  228 (527)
Q Consensus       224 l~~lp  228 (527)
                      ++.+|
T Consensus        77 i~~~~   81 (124)
T d1dcea3          77 LQQSA   81 (124)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            55443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.6e-16  Score=159.18  Aligned_cols=85  Identities=19%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             hcchhccc-CCCceee----cCchhhhcCCCCCEEEcccccccc--------c---cccccceEEcccccccCCCCCCcc
Q 035895           20 CYRICTID-SQNKLVG----IVSITIFNLSTLKVFDVDNNYVLG--------R---LSSIVDELSLSDNYLTSSTPELSF   83 (527)
Q Consensus        20 ~~~~~~~~-s~N~l~~----~~~~~~~~l~~L~~L~Ls~N~~~~--------~---~~~~l~~L~Ls~N~l~~~~~~~~~   83 (527)
                      +..++.++ ++|.++.    .+..++..+++|+.|||++|.+..        .   ....++.|+|++|.++..... .+
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~-~l  104 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VL  104 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc-cc
Confidence            33455566 7777763    234567899999999999998741        1   123589999999998753211 12


Q ss_pred             cccCCCCCCCCEEEcccCCCCc
Q 035895           84 LSSMSNCKYLKKLDISRNPLDG  105 (527)
Q Consensus        84 ~~~~~~l~~L~~L~Ls~N~l~~  105 (527)
                      ...+..+++|++|++++|.+..
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHH
T ss_pred             cchhhccccccccccccccchh
Confidence            2356788999999999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=129.81  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             CCCCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecCcccccCcccccCCCCC
Q 035895           87 MSNCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGNKLNGSISITLGKLQKL  166 (527)
Q Consensus        87 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  166 (527)
                      |.++.+|++|||++|+|+.+ +..+..+ ++|+.|+|++|.|+..  +.                        +..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l-~~L~~L~Ls~N~i~~l--~~------------------------~~~l~~L   65 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATL-DQFDAIDFSDNEIRKL--DG------------------------FPLLRRL   65 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGT-TCCSEEECCSSCCCEE--CC------------------------CCCCSSC
T ss_pred             ccCcCcCcEEECCCCCCCcc-Ccccccc-ccCCEEECCCCCCCcc--CC------------------------cccCcch
Confidence            44555566666666666543 3332222 2344444444444422  12                        3344444


Q ss_pred             CEEeccCcccccccChhhhcCcccCeeeeecccCCCCCC-ccccCCccCceeeCCCCCCCCCc
Q 035895          167 QFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIP-TCFGNLTALRNLHLDSNELTSIP  228 (527)
Q Consensus       167 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~lp  228 (527)
                      +.|++++|+++...+..+..+++|+.|++++|+|+.... ..+..+++|++|++++|.++..|
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             hhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            444444444443333334444444445555444443211 23455555555555555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.2e-15  Score=140.74  Aligned_cols=183  Identities=15%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             CCCCCCEEEcccCCCCcccChhHhhccccccEEEcccCccccccchhhcCCcCCcEEEeecC-ccccc-CcccccCCCCC
Q 035895           89 NCKYLKKLDISRNPLDGFLPRVVGNFSQSLEFIWMSDCNISGGISEEIGNLTDLISIDLGGN-KLNGS-ISITLGKLQKL  166 (527)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L  166 (527)
                      ...+|++||+++|.++......+....++|++|+|++|.++...+..+..+++|++|+++++ .++.. +...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34567778887777654322222222246777777777766666666666777777777763 44421 11223456667


Q ss_pred             CEEeccCc-ccccc-cChhhhc-CcccCeeeeeccc--CCCC-CCccccCCccCceeeCCCCCCCCCchhhhCCCCccEE
Q 035895          167 QFLSFRGN-ELEGS-IPNVLCH-LAVLFQLDLRGNK--LSGS-IPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYL  240 (527)
Q Consensus       167 ~~L~l~~N-~l~~~-~p~~~~~-l~~L~~L~L~~N~--l~~~-~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l  240 (527)
                      ++|+++++ .++.. ++..+.. .+.|+.|+++++.  ++.. +...+.++++|++|++++|.                 
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-----------------  186 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-----------------  186 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-----------------
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-----------------
Confidence            77777664 23211 1112222 3456666665431  2211 11122344555555555542                 


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCC-CCCCCChhhhhcCCCCCEEEcccc
Q 035895          241 DFWSNLFVGPLPSKIGNLKVLTRIDFSRN-NLLGDIPTTIQGLKSLQFLSLGHN  293 (527)
Q Consensus       241 ~l~~n~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N  293 (527)
                           .++......+..+++|++|++++| .+++.....++.+++|+.|+++++
T Consensus       187 -----~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         187 -----MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -----TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -----CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                 122223333444455555555552 333333334455555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.3e-14  Score=119.91  Aligned_cols=57  Identities=26%  Similarity=0.433  Sum_probs=24.2

Q ss_pred             EEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCC
Q 035895          168 FLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSI  227 (527)
Q Consensus       168 ~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~l  227 (527)
                      +|++++|+++ .++ .+..++.|++|++++|+|+. +|+.|+.+++|++|++++|+|+.+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l   58 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV   58 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc
Confidence            3444444444 222 13444444444444444442 233344444444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=5.5e-16  Score=152.51  Aligned_cols=186  Identities=18%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             hcCCcCCcEEEeecCccccc----CcccccCCCCCCEEeccCcccccccCh-------------hhhcCcccCeeeeecc
Q 035895          136 IGNLTDLISIDLGGNKLNGS----ISITLGKLQKLQFLSFRGNELEGSIPN-------------VLCHLAVLFQLDLRGN  198 (527)
Q Consensus       136 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~p~-------------~~~~l~~L~~L~L~~N  198 (527)
                      +...++|++|+|++|.++..    +...+...++|+.|++++|.+...-..             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            34445566666666655432    122233455566666666554311000             0123345566666666


Q ss_pred             cCCCC----CCccccCCccCceeeCCCCCCCC------CchhhhCCCCccEEEccCCccccc----CCccccCCCCCCEE
Q 035895          199 KLSGS----IPTCFGNLTALRNLHLDSNELTS------IPSILWNLKDILYLDFWSNLFVGP----LPSKIGNLKVLTRI  264 (527)
Q Consensus       199 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L  264 (527)
                      .+...    +...+...+.|++|++++|.++.      +...+...+.|+.|++++|.+...    +...+..+++|++|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            55421    11223445566666666666653      112234455566666666654321    23445566777777


Q ss_pred             EccCCCCCCCChh----hhhc--CCCCCEEEcccccceee----cCCCC-CCCCCCCEEeCCCCcccc
Q 035895          265 DFSRNNLLGDIPT----TIQG--LKSLQFLSLGHNRLQGS----IPNSF-DDLVSLESLDLSNNNLSE  321 (527)
Q Consensus       265 ~Ls~N~l~~~~p~----~~~~--l~~L~~L~L~~N~l~~~----~p~~~-~~l~~L~~L~ls~N~l~~  321 (527)
                      +|++|.+.+.-..    .+..  .+.|++|++++|+|+..    +...+ .++++|+.|++++|++..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            8877777543222    2222  24677788888777532    12222 145677788888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.9e-14  Score=141.37  Aligned_cols=238  Identities=18%  Similarity=0.249  Sum_probs=117.0

Q ss_pred             hhhhcCCCCCEEEccccccccc--------c--ccccceEEcccccccCCCCCCc-----ccccCCCCCCCCEEEcccCC
Q 035895           38 ITIFNLSTLKVFDVDNNYVLGR--------L--SSIVDELSLSDNYLTSSTPELS-----FLSSMSNCKYLKKLDISRNP  102 (527)
Q Consensus        38 ~~~~~l~~L~~L~Ls~N~~~~~--------~--~~~l~~L~Ls~N~l~~~~~~~~-----~~~~~~~l~~L~~L~Ls~N~  102 (527)
                      .++...++|+.|+|++|.+...        +  ...++.++++++.........+     +...+..+++|++|||++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            4567788899999998876321        1  1235666766665443221110     11234556677777777776


Q ss_pred             CCccc----ChhHhhccccccEEEcccCccccccchh-------------hcCCcCCcEEEeecCccccc----Cccccc
Q 035895          103 LDGFL----PRVVGNFSQSLEFIWMSDCNISGGISEE-------------IGNLTDLISIDLGGNKLNGS----ISITLG  161 (527)
Q Consensus       103 l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~----~~~~~~  161 (527)
                      ++...    ...+... ++|+.|++++|.+...-...             ....+.|+.+++++|+++..    +...+.
T Consensus       105 i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cccccccchhhhhccc-ccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            65421    1122222 35666777666654211111             12344555555555555421    112233


Q ss_pred             CCCCCCEEeccCcccccc-----cChhhhcCcccCeeeeecccCCCC----CCccccCCccCceeeCCCCCCCCCc-hhh
Q 035895          162 KLQKLQFLSFRGNELEGS-----IPNVLCHLAVLFQLDLRGNKLSGS----IPTCFGNLTALRNLHLDSNELTSIP-SIL  231 (527)
Q Consensus       162 ~l~~L~~L~l~~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~lp-~~~  231 (527)
                      ..+.|+.|++++|++...     +...+..+++|+.|+|++|.++..    +...+..+++|++|++++|.|+... .. 
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~-  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA-  262 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH-
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH-
Confidence            445555555555555321     122234444555555555554321    1223344445555555555544310 00 


Q ss_pred             hCCCCccEEEccCCcccccCCcccc--CCCCCCEEEccCCCCCCC----Chhhhh-cCCCCCEEEcccccce
Q 035895          232 WNLKDILYLDFWSNLFVGPLPSKIG--NLKVLTRIDFSRNNLLGD----IPTTIQ-GLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       232 ~~l~~L~~l~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~  296 (527)
                                         +-..+.  ..+.|++|++++|++...    +...+. ++++|++|++++|++.
T Consensus       263 -------------------l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 -------------------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             -------------------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             -------------------HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence                               111111  124577788888776532    222332 5677888888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=2.2e-15  Score=135.62  Aligned_cols=112  Identities=22%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             hhhhcCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCC
Q 035895          182 NVLCHLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVL  261 (527)
Q Consensus       182 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L  261 (527)
                      ..+..+++|++|+|++|+|+.. + .+..+++|++|++++|+|+.+|.....++.|+.|++++|.+...  +.+..+++|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccccccccccccccccccccccccccc--ccccccccc
Confidence            3444444555555555554432 2 24445555555555555544443222222233333333322211  113334445


Q ss_pred             CEEEccCCCCCCCCh-hhhhcCCCCCEEEccccccee
Q 035895          262 TRIDFSRNNLLGDIP-TTIQGLKSLQFLSLGHNRLQG  297 (527)
Q Consensus       262 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~  297 (527)
                      ++|++++|+++.... ..+..+++|+.|++++|++..
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCcccc
Confidence            555555555543211 244555555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=7.3e-15  Score=132.15  Aligned_cols=110  Identities=22%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             chhhcCCcCCcEEEeecCcccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCCCccccCCc
Q 035895          133 SEEIGNLTDLISIDLGGNKLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSIPTCFGNLT  212 (527)
Q Consensus       133 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  212 (527)
                      +..+..+++|++|+|++|+|+.. + .+..+++|+.|++++|.++ .+|..+..++.|+.|++++|+|+..  +.+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            34455555566666666665532 2 3555566666666666655 3444444455566666666666532  2355566


Q ss_pred             cCceeeCCCCCCCCCch--hhhCCCCccEEEccCCcc
Q 035895          213 ALRNLHLDSNELTSIPS--ILWNLKDILYLDFWSNLF  247 (527)
Q Consensus       213 ~L~~L~L~~N~l~~lp~--~~~~l~~L~~l~l~~n~~  247 (527)
                      +|++|++++|+++.++.  .+..+++|+.|++++|.+
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCcc
Confidence            66666666666665542  233444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.1e-13  Score=114.45  Aligned_cols=104  Identities=18%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             cEEEcccCccccccchhhcCCcCCcEEEeecC-cccccCcccccCCCCCCEEeccCcccccccChhhhcCcccCeeeeec
Q 035895          119 EFIWMSDCNISGGISEEIGNLTDLISIDLGGN-KLNGSISITLGKLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRG  197 (527)
Q Consensus       119 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~  197 (527)
                      +.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+...|.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34555555544 23444455555555555433 25444444555555555555555555544444555555555555555


Q ss_pred             ccCCCCCCccccCCccCceeeCCCCCC
Q 035895          198 NKLSGSIPTCFGNLTALRNLHLDSNEL  224 (527)
Q Consensus       198 N~l~~~~p~~~~~l~~L~~L~L~~N~l  224 (527)
                      |+|+...+..|..+ +|+.|+|++|.+
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             CCCcccChhhhccc-cccccccCCCcc
Confidence            55554433344333 355555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=108.54  Aligned_cols=106  Identities=19%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             CceeeCCCCCCCCCchhhhCCCCccEEEccCCc-ccccCCccccCCCCCCEEEccCCCCCCCChhhhhcCCCCCEEEccc
Q 035895          214 LRNLHLDSNELTSIPSILWNLKDILYLDFWSNL-FVGPLPSKIGNLKVLTRIDFSRNNLLGDIPTTIQGLKSLQFLSLGH  292 (527)
Q Consensus       214 L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  292 (527)
                      ...++.+++.+.++|..+..+++|+.|++++|+ +....++.|.++++|+.|++++|+++...|.+|.++++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344555555555555555555556666665443 4444456788889999999999999888888899999999999999


Q ss_pred             ccceeecCCCCCCCCCCCEEeCCCCccc
Q 035895          293 NRLQGSIPNSFDDLVSLESLDLSNNNLS  320 (527)
Q Consensus       293 N~l~~~~p~~~~~l~~L~~L~ls~N~l~  320 (527)
                      |+|+...+..|..+ +|+.|+|++|++.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            99986656666554 6999999999884

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.1e-09  Score=90.54  Aligned_cols=67  Identities=21%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             CCCCCCEEeccCcccccccChhhhcCcccCeeeeecccCCCCC--CccccCCccCceeeCCCCCCCCCch
Q 035895          162 KLQKLQFLSFRGNELEGSIPNVLCHLAVLFQLDLRGNKLSGSI--PTCFGNLTALRNLHLDSNELTSIPS  229 (527)
Q Consensus       162 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~lp~  229 (527)
                      .+..+..++...+... .++..+..++.|++|+|++|+|+...  +..+..+++|+.|+|++|.++.+++
T Consensus        40 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~  108 (162)
T d1koha1          40 AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE  108 (162)
T ss_dssp             TTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG
T ss_pred             hccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh
Confidence            3344444444444332 34445566777777777777776543  3445667777777777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.7e-09  Score=90.18  Aligned_cols=89  Identities=20%  Similarity=0.183  Sum_probs=41.9

Q ss_pred             cCcccCeeeeecccCCCCCCccccCCccCceeeCCCCCCCCCchhhhCCCCccEEEccCCcccccCCccccCCCCCCEEE
Q 035895          186 HLAVLFQLDLRGNKLSGSIPTCFGNLTALRNLHLDSNELTSIPSILWNLKDILYLDFWSNLFVGPLPSKIGNLKVLTRID  265 (527)
Q Consensus       186 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~  265 (527)
                      .+..+..++..++.+. .++..+..+++|++|+|++|+|+.++.                     ++..+..+++|+.|+
T Consensus        40 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~---------------------~~~~~~~l~~L~~L~   97 (162)
T d1koha1          40 AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDD---------------------MSSIVQKAPNLKILN   97 (162)
T ss_dssp             TTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSG---------------------GGTHHHHSTTCCCCC
T ss_pred             hccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCch---------------------hHHHHhhCCcccccc
Confidence            3333444444443332 233344456666666666666665532                     112233445555555


Q ss_pred             ccCCCCCCCChhhhhcCCCCCEEEcccccce
Q 035895          266 FSRNNLLGDIPTTIQGLKSLQFLSLGHNRLQ  296 (527)
Q Consensus       266 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (527)
                      +++|.++...+-.+....+|+.|++++|.+.
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcC
Confidence            5555555333323333344555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=3.1e-05  Score=65.82  Aligned_cols=86  Identities=15%  Similarity=0.095  Sum_probs=37.1

Q ss_pred             CCCCCCEEEcccC-CCCcccC----hhHhhccccccEEEcccCccccc----cchhhcCCcCCcEEEeecCccccc----
Q 035895           89 NCKYLKKLDISRN-PLDGFLP----RVVGNFSQSLEFIWMSDCNISGG----ISEEIGNLTDLISIDLGGNKLNGS----  155 (527)
Q Consensus        89 ~l~~L~~L~Ls~N-~l~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----  155 (527)
                      +.+.|++|+|+++ .++...-    ..+... +.|+.|+|++|.+...    +...+...+.|++|+|++|.++..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            3466777777653 3432100    111111 2355555555555421    122333344555555555555421    


Q ss_pred             CcccccCCCCCCEEeccCcc
Q 035895          156 ISITLGKLQKLQFLSFRGNE  175 (527)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~N~  175 (527)
                      +...+...++|+.|++++|.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            11123334445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=2.1e-05  Score=66.92  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=29.0

Q ss_pred             cccEEEcccC-ccccc----cchhhcCCcCCcEEEeecCcccccC----cccccCCCCCCEEeccCcccc
Q 035895          117 SLEFIWMSDC-NISGG----ISEEIGNLTDLISIDLGGNKLNGSI----SITLGKLQKLQFLSFRGNELE  177 (527)
Q Consensus       117 ~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~  177 (527)
                      +|+.|+|+++ .++..    +-..+...+.|++|+|++|.+....    ...+...+.|+.|++++|.+.
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            5666666653 34321    1233444555666666666554211    112233445555555555554

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.42  E-value=0.00068  Score=61.51  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=25.9

Q ss_pred             CeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          476 PIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       476 ~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      .++|+|+.|.||++++++.+-+.||+.+..
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhccc
Confidence            379999999999999876677999988764

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.10  E-value=0.0005  Score=62.11  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=26.7

Q ss_pred             CCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          475 TPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       475 ~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..+||+|+.|.||+++++..+-|.||+.+..
T Consensus       175 ~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         175 LVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            3479999999999999877778999998865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00025  Score=59.87  Aligned_cols=12  Identities=17%  Similarity=0.324  Sum_probs=7.2

Q ss_pred             CCCCCCEEEccc
Q 035895           89 NCKYLKKLDISR  100 (527)
Q Consensus        89 ~l~~L~~L~Ls~  100 (527)
                      +.+.|++|+|++
T Consensus        15 ~~~~L~~L~L~~   26 (166)
T d1io0a_          15 NDPDLEEVNLNN   26 (166)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cCCCCcEEEcCC
Confidence            445666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00015  Score=61.28  Aligned_cols=60  Identities=22%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             ccCCCCCCEEeccCcccccc----cChhhhcCcccCeeeeecccCCCC----CCccccCCccCceeeC
Q 035895          160 LGKLQKLQFLSFRGNELEGS----IPNVLCHLAVLFQLDLRGNKLSGS----IPTCFGNLTALRNLHL  219 (527)
Q Consensus       160 ~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L  219 (527)
                      +...++|+.|++++|.+...    +-..+...+.++.+++++|.+...    +...+...++|+.++|
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            33455555555555555422    112233445555555555555321    1123444555655444

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.42  E-value=0.0048  Score=59.45  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ...++|+|+.|.|||++++. ++|.||-+|..
T Consensus       222 ~~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         222 AETLIHGDLHTGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             CCEEECSCCCGGGEEECSSC-EEECCCTTCEE
T ss_pred             CcceeccCCcCCceeEcCCc-eEEechhhccc
Confidence            34689999999999998764 89999988764

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.046  Score=50.75  Aligned_cols=30  Identities=23%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 035895          474 STPIIHCDLKPHNKLLDDNIVAHLSDFGIAKL  505 (527)
Q Consensus       474 ~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~~  505 (527)
                      ..++||+|+.+.|||++++  ..+.||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            4578999999999999754  45899988764

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.59  E-value=0.065  Score=49.28  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             CCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 035895          473 YSTPIIHCDLKPHNKLLDDNIVAHLSDFGIAK  504 (527)
Q Consensus       473 ~~~~iiHrdlk~~nill~~~~~~kl~Dfg~a~  504 (527)
                      ...++||+|+.+.||+++.+...-|.||+.+.
T Consensus       181 L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         181 LPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             SCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccccCCcchhhhhcccccceeEecccccc
Confidence            46789999999999999988777899999875

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.25  E-value=0.56  Score=44.24  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             ceeccCCceEEEEEEccC--------CcEEEEEEE
Q 035895          391 NLIGRGSFGSVYKARLQD--------GMEFAIKVF  417 (527)
Q Consensus       391 ~~lg~G~~g~vy~~~~~~--------~~~vavK~~  417 (527)
                      +.|+.|-.-.+|++...+        .+.|.+++.
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~   82 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY   82 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEec
Confidence            578889999999998643        345777765