Citrus Sinensis ID: 035916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
ccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHcccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccHEEHccEEEEEcccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHc
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYdykpecigeGQKILLYTALGLIAFgisghmgsiDRFIADQatnfreeefsmsfrpqlIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLsgsssyrrrkpqgsslTTVVRVFVASISKlsyrcprhaselyersdindlyvvphsrglrwldKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAevingkdggnfsfgPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLdvvrshglidkpdekipmslFWLLPQFLLlgaadgfyekgidmffsdqfPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISerigkhnwfqdtlnlsrlDNYYWLLAALTAANLAVLIIAAM
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSgsssyrrrkpqgsslttvVRVFVASisklsyrcprhaselyersdindlYVVPHSRGLRWLDKAAIIlpnktlrqqernrWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGlidkpdekipmSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSlfwllpqflllGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWllaaltaanlavliiaaM
**VLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSG*************LTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIA**
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFR******SFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHA*****************SRGLRWLDKAAI*****************CSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSG*************LTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
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MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query506 2.2.26 [Sep-21-2011]
O80436521 Putative peptide/nitrate yes no 0.926 0.900 0.381 4e-86
Q9M1I2555 Probable peptide/nitrate no no 0.909 0.828 0.307 3e-55
Q9M331602 Probable peptide/nitrate no no 0.940 0.790 0.291 1e-53
P0CI03575 Putative peptide/nitrate no no 0.924 0.813 0.298 2e-52
P46032585 Peptide transporter PTR2 no no 0.948 0.820 0.314 2e-51
Q9M390570 Peptide transporter PTR1 no no 0.954 0.847 0.291 1e-48
Q9LFB8570 Peptide transporter PTR5 no no 0.934 0.829 0.292 2e-47
Q93Z20590 Probable peptide/nitrate no no 0.930 0.798 0.292 2e-39
Q0WSZ6561 Probable peptide/nitrate no no 0.861 0.777 0.280 3e-38
Q9FNL7582 Peptide transporter PTR3- no no 0.901 0.783 0.262 4e-38
>sp|O80436|PTR29_ARATH Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1 Back     alignment and function desciption
 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 289/519 (55%), Gaps = 50/519 (9%)

Query: 1   MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTIS 60
           M+VLSW+     F  WM+M YLT    + F  AA IVN+F G + +  L +++LVD  I 
Sbjct: 1   MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIG 60

Query: 61  KYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120
            +WM+ +S+ A++    FL     P   G GQK L Y AL +I+ GI G   S+  F  D
Sbjct: 61  HFWMLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTED 120

Query: 121 QATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLF--------IKSWKIKFGILAM 172
           Q  + R +       P  ++ SF    ++ N+ +  FL         I  W ++F I + 
Sbjct: 121 QLEDGRNKG-----NPAKLV-SF----VIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSG 170

Query: 173 FTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDL 232
              ++ L+F+SG+ SY+R KP GS LTTV RVF+AS SK+S     ++S+LYE+++  D 
Sbjct: 171 CEVLAMLIFISGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAEC-DQ 229

Query: 233 YVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPG 292
            + PH+  LR+LD+AA+IL  ++L QQ +NRW+LC VTEVE+TK ++  +P+  T +I G
Sbjct: 230 DIKPHTSSLRYLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISG 289

Query: 293 VVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWN 352
           +V S+GNTF LEQA  ++ K G   S+   L LL  +    R        +G        
Sbjct: 290 IVFSLGNTFFLEQANHMDSKFG---SWNLPLPLLLLFSEAAR--------LGSRELCVMA 338

Query: 353 AVAHVV-------------GFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIP 399
           A  H +             G  +S+ILSI CC  AA VE+RRL VV + GL+    E +P
Sbjct: 339 AKRHAIDFPESPKQTKTPYGIPVSIILSIFCCSIAAHVESRRLKVVSTQGLL---HETVP 395

Query: 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVY 459
           MS+FWLLPQ++LLG+  G YE    ++  +  P  + +Y+  + V   GVGI+ +   V 
Sbjct: 396 MSVFWLLPQYILLGSITGIYENSFALYLEETVPEELSQYMVLLNVGVCGVGIMSNIALVS 455

Query: 460 YAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANL 498
             G +S   GK  WFQDT+N SR+DNYYW++      NL
Sbjct: 456 LVGSVSG--GK--WFQDTINKSRVDNYYWVITVFCMFNL 490

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 Back     alignment and function description
>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2 Back     alignment and function description
>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 Back     alignment and function description
>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 Back     alignment and function description
>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 Back     alignment and function description
>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
297827361521 proton-dependent oligopeptide transport 0.926 0.900 0.383 3e-86
15224443521 proton-dependent oligopeptide transport- 0.926 0.900 0.381 3e-84
186511048555 putative peptide/nitrate transporter [Ar 0.909 0.828 0.307 2e-53
297816742555 hypothetical protein ARALYDRAFT_348537 [ 0.909 0.828 0.307 6e-53
297820132602 proton-dependent oligopeptide transport 0.940 0.790 0.291 3e-52
356496092594 PREDICTED: probable peptide/nitrate tran 0.922 0.786 0.305 6e-52
42565909602 major facilitator protein [Arabidopsis t 0.940 0.790 0.291 7e-52
7630016 620 transporter-like protein [Arabidopsis th 0.940 0.767 0.291 1e-51
302759054575 hypothetical protein SELMODRAFT_165561 [ 0.954 0.84 0.296 2e-51
168058470604 predicted protein [Physcomitrella patens 0.922 0.773 0.312 4e-51
>gi|297827361|ref|XP_002881563.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297327402|gb|EFH57822.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 199/519 (38%), Positives = 286/519 (55%), Gaps = 50/519 (9%)

Query: 1   MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTIS 60
           M+VLSW+     F  WM+M YLT    + F  AA IVN+F G + +  L++++LVD  I 
Sbjct: 1   MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLSMQFLVDAFIG 60

Query: 61  KYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120
            +WM+ +S+ A++    FL     P   G GQK L Y AL +I+ GI G   S+  F  D
Sbjct: 61  HFWMLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTED 120

Query: 121 QATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLF--------IKSWKIKFGILAM 172
           Q     EE  +     +L+ F      ++ N+ ++ FL         I  W ++F I + 
Sbjct: 121 QL----EEGRNKGNPAKLVSF------VIGNVGNLVFLLLAAIAMPQISPWFVRFAIPSG 170

Query: 173 FTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDL 232
              ++ ++FLSG+ SYRR KP GS LT + RVFVAS SK+S   P ++S+LYE+++  D 
Sbjct: 171 CEVLAMMIFLSGTCSYRRVKPGGSPLTAIFRVFVASASKMSCAYPNNSSQLYEKAEC-DQ 229

Query: 233 YVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPG 292
            + PH+  LR LD+AA+IL  + L QQ +NRW+LC VTEVE+TK ++  +P+  T +I G
Sbjct: 230 DIKPHTSSLRCLDRAAMILQTEPLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISG 289

Query: 293 VVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWN 352
           +V S+GNTF LEQA  ++ K G   S+   L LL  +    R        +G        
Sbjct: 290 IVFSLGNTFFLEQANHMDSKFG---SWNLPLPLLLLFSEAAR--------LGSRELCVMA 338

Query: 353 AVAHVV-------------GFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIP 399
           A  H +             G  +S+ILSI CC  AA VE+RRL VVR+ GL+    E +P
Sbjct: 339 AKRHAIDLPESPKQTKTPYGIPVSIILSIFCCSIAAHVESRRLKVVRTQGLL---YETVP 395

Query: 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVY 459
           MS+FWLLPQ++LLG+  G YE    ++  +  P  + +Y+    V   GVGI+ +   V 
Sbjct: 396 MSVFWLLPQYILLGSITGIYENSFALYLEETVPEELSQYMVLFNVGVCGVGIMSNIALVS 455

Query: 460 YAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANL 498
             G    R+    WFQDT+N SRLDNYYW++      NL
Sbjct: 456 VVG----RVSGGKWFQDTINKSRLDNYYWVITVFCMFNL 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15224443|ref|NP_181345.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana] gi|75223187|sp|O80436.1|PTR29_ARATH RecName: Full=Putative peptide/nitrate transporter At2g38100 gi|3335358|gb|AAC27159.1| putative peptide/amino acid transporter [Arabidopsis thaliana] gi|330254395|gb|AEC09489.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186511048|ref|NP_974431.2| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75311782|sp|Q9M1I2.1|PTR46_ARATH RecName: Full=Probable peptide/nitrate transporter At3g54450 gi|7258348|emb|CAB77565.1| oligopeptide transporter-like protein [Arabidopsis thaliana] gi|332645712|gb|AEE79233.1| putative peptide/nitrate transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816742|ref|XP_002876254.1| hypothetical protein ARALYDRAFT_348537 [Arabidopsis lyrata subsp. lyrata] gi|297322092|gb|EFH52513.1| hypothetical protein ARALYDRAFT_348537 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297820132|ref|XP_002877949.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297323787|gb|EFH54208.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356496092|ref|XP_003516904.1| PREDICTED: probable peptide/nitrate transporter At3g53960-like [Glycine max] Back     alignment and taxonomy information
>gi|42565909|ref|NP_190964.2| major facilitator protein [Arabidopsis thaliana] gi|310947331|sp|Q9M331.2|PTR45_ARATH RecName: Full=Probable peptide/nitrate transporter At3g53960 gi|332645643|gb|AEE79164.1| major facilitator protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7630016|emb|CAB88358.1| transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302759054|ref|XP_002962950.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii] gi|300169811|gb|EFJ36413.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|168058470|ref|XP_001781231.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667296|gb|EDQ53929.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
TAIR|locus:2042937521 AT2G38100 [Arabidopsis thalian 0.936 0.909 0.380 1.1e-76
TAIR|locus:1006230253555 AT3G54450 [Arabidopsis thalian 0.911 0.830 0.289 1.4e-46
TAIR|locus:2065568575 AT2G37900 [Arabidopsis thalian 0.895 0.787 0.285 5.7e-43
TAIR|locus:2084500602 AT3G53960 [Arabidopsis thalian 0.903 0.759 0.273 1.2e-42
TAIR|locus:2150124570 PTR5 "peptide transporter 5" [ 0.916 0.814 0.276 3.3e-40
TAIR|locus:2041125585 PTR2 "peptide transporter 2" [ 0.847 0.733 0.303 6.8e-40
TAIR|locus:2080235570 PTR1 "peptide transporter 1" [ 0.780 0.692 0.286 1e-36
TAIR|locus:2161428586 AT5G46040 [Arabidopsis thalian 0.903 0.779 0.275 7.7e-36
TAIR|locus:4515102750561 AT1G72125 [Arabidopsis thalian 0.899 0.811 0.269 1.2e-34
TAIR|locus:2018032590 PTR6 "peptide transporter 6" [ 0.760 0.652 0.292 2e-34
TAIR|locus:2042937 AT2G38100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 188/494 (38%), Positives = 270/494 (54%)

Query:     1 MAVLSWSDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTIS 60
             M+VLSW+     F  WM+M YLT    + F  AA IVN+F G + +  L +++LVD  I 
Sbjct:     1 MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIG 60

Query:    61 KYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120
              +WM+ +S+ A++    FL     P   G GQK L Y AL +I+ GI G   S+  F  D
Sbjct:    61 HFWMLCLSTLAFSFGFGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTED 120

Query:   121 QATNFREEEFSMSFRP-QLIIFSFWGLSLVPNIL--SIAFLFIKSWKIKFGILAMFTTVS 177
             Q  + R +       P +L+ F    +     +L  +IA   I  W ++F I +    ++
Sbjct:   121 QLEDGRNKG-----NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLA 175

Query:   178 TLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPH 237
              L+F+SG+ SY+R KP GS LTTV RVF+AS SK+S     ++S+LYE+++  D  + PH
Sbjct:   176 MLIFISGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAEC-DQDIKPH 234

Query:   238 SRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSI 297
             +  LR+LD+AA+IL  ++L QQ +NRW+LC VTEVE+TK ++  +P+  T +I G+V S+
Sbjct:   235 TSSLRYLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSL 294

Query:   298 GNTFLLEQAEVINGKDGG-NFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNA--V 354
             GNTF LEQA  ++ K G  N    PLLLL       G           H      +    
Sbjct:   295 GNTFFLEQANHMDSKFGSWNLPL-PLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQT 353

Query:   355 AHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSXXXXXXXXXXXGA 414
                 G  +S+ILSI CC  AA VE+RRL VV + GL+    E +PMS           G+
Sbjct:   354 KTPYGIPVSIILSIFCCSIAAHVESRRLKVVSTQGLLH---ETVPMSVFWLLPQYILLGS 410

Query:   415 ADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWF 474
               G YE    ++  +  P  + +Y+  + V   GVGI+ +   V   G +S   GK  WF
Sbjct:   411 ITGIYENSFALYLEETVPEELSQYMVLLNVGVCGVGIMSNIALVSLVGSVSG--GK--WF 466

Query:   475 QDTLNLSRLDNYYW 488
             QDT+N SR+DNYYW
Sbjct:   467 QDTINKSRVDNYYW 480
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006857 "oligopeptide transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0015210 "uracil transmembrane transporter activity" evidence=ISS
GO:0015931 "nucleobase-containing compound transport" evidence=ISS
GO:0016020 "membrane" evidence=IEA
TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80436PTR29_ARATHNo assigned EC number0.38150.92680.9001yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_4001571
annotation not avaliable (521 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
pfam00854372 pfam00854, PTR2, POT family 4e-20
TIGR00926 641 TIGR00926, 2A1704, Peptide:H+ symporter (also tran 0.002
>gnl|CDD|216153 pfam00854, PTR2, POT family Back     alignment and domain information 
 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 80/385 (20%), Positives = 137/385 (35%), Gaps = 42/385 (10%)

Query: 62  YWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQ 121
           +  IL+ S  Y      L     P  +   Q  L Y  L LIA G  G   ++  F ADQ
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQ 60

Query: 122 ATNFREEEFSMSFRPQLI-IFSFWGLSLVPNILSIAFLFI-------KSWKIKFGILAMF 173
                   F  +  P+    FS++  S+  N  S+    I         + + FG+ A+ 
Sbjct: 61  --------FDETQDPRRDGFFSWFYFSI--NAGSLIATIITPYLQQNVGYPLGFGLPAVG 110

Query: 174 TTVSTLVFLSGSSSYRRRKPQGSSLTTVVR--VFVASISKLSYRCPRHASELYE----RS 227
             ++ LVFL GS  Y+++ P G S  TV    +  A+      + P+ +  LY      +
Sbjct: 111 MLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYN 170

Query: 228 DINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFT 287
             +      H+R    +                           V   + ++ ++PI   
Sbjct: 171 KRSISQTKVHTRVAV-IFIPLPKFWAL-----------FDQQGSVWLLQAILLMLPIWAF 218

Query: 288 FIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLT 347
           +I+P  + +   T ++ Q   ++      F   P     F  ++        +  V  L 
Sbjct: 219 WILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLL 278

Query: 348 SVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLP 407
            +    +     F + M + I+    AAIVE +R     + GL       +P+ + W LP
Sbjct: 279 RLKRG-LTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPG-WTVPLFILWSLP 336

Query: 408 QFLLLGAADGFYEKGIDMFFSDQFP 432
           +  + G        G   F  D  P
Sbjct: 337 ELFISGVG----LAGALEFAPDALP 357

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372
>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 506
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 100.0
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 100.0
TIGR00926654 2A1704 Peptide:H+ symporter (also transports b-lac 100.0
PRK15462493 dipeptide/tripeptide permease D; Provisional 100.0
PRK10207489 dipeptide/tripeptide permease B; Provisional 100.0
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 100.0
PRK09584500 tppB putative tripeptide transporter permease; Rev 100.0
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 100.0
PRK11646400 multidrug resistance protein MdtH; Provisional 99.71
PRK10054395 putative transporter; Provisional 99.69
TIGR00893399 2A0114 d-galactonate transporter. 99.69
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.66
TIGR00900365 2A0121 H+ Antiporter protein. 99.66
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.66
PRK12382392 putative transporter; Provisional 99.65
PRK03545390 putative arabinose transporter; Provisional 99.65
PRK05122399 major facilitator superfamily transporter; Provisi 99.65
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.63
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.63
PRK14995495 methyl viologen resistance protein SmvA; Provision 99.62
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.6
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.6
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.59
PRK09874408 drug efflux system protein MdtG; Provisional 99.59
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.58
TIGR00891405 2A0112 putative sialic acid transporter. 99.58
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.57
TIGR00895398 2A0115 benzoate transport. 99.57
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.56
PRK10489417 enterobactin exporter EntS; Provisional 99.56
PRK10504471 putative transporter; Provisional 99.55
PRK09528420 lacY galactoside permease; Reviewed 99.55
PRK12307426 putative sialic acid transporter; Provisional 99.54
PRK09705393 cynX putative cyanate transporter; Provisional 99.54
TIGR00898505 2A0119 cation transport protein. 99.53
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.52
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.51
PRK11663434 regulatory protein UhpC; Provisional 99.51
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.51
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.5
PRK11195393 lysophospholipid transporter LplT; Provisional 99.5
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.5
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.5
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.5
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.49
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.49
PRK15011393 sugar efflux transporter B; Provisional 99.49
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.49
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.48
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.48
PRK11652394 emrD multidrug resistance protein D; Provisional 99.47
PRK10091382 MFS transport protein AraJ; Provisional 99.47
PRK03633381 putative MFS family transporter protein; Provision 99.47
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.46
PRK03699394 putative transporter; Provisional 99.46
TIGR00901356 2A0125 AmpG-related permease. 99.46
TIGR00896355 CynX cyanate transporter. This family of proteins 99.45
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.45
PRK03893496 putative sialic acid transporter; Provisional 99.44
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.44
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.44
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.42
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.42
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.41
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.39
PRK11043401 putative transporter; Provisional 99.37
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.37
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.37
PLN00028476 nitrate transmembrane transporter; Provisional 99.37
TIGR00897402 2A0118 polyol permease family. This family of prot 99.36
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.35
PRK09952438 shikimate transporter; Provisional 99.35
PRK10642490 proline/glycine betaine transporter; Provisional 99.34
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.33
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.33
PRK10133438 L-fucose transporter; Provisional 99.32
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.32
PRK15075434 citrate-proton symporter; Provisional 99.3
PRK09848448 glucuronide transporter; Provisional 99.29
PRK09669444 putative symporter YagG; Provisional 99.29
KOG2532466 consensus Permease of the major facilitator superf 99.25
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.24
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.23
PF13347428 MFS_2: MFS/sugar transport protein 99.22
PRK11902402 ampG muropeptide transporter; Reviewed 99.21
PRK11010491 ampG muropeptide transporter; Validated 99.17
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.17
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.17
PRK10429473 melibiose:sodium symporter; Provisional 99.17
KOG0569485 consensus Permease of the major facilitator superf 99.15
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 99.11
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.09
KOG0254513 consensus Predicted transporter (major facilitator 98.96
PRK11462460 putative transporter; Provisional 98.94
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.88
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 98.85
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 98.85
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.85
TIGR00805633 oat sodium-independent organic anion transporter. 98.78
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 98.74
KOG3764464 consensus Vesicular amine transporter [Intracellul 98.69
PRK05122399 major facilitator superfamily transporter; Provisi 98.67
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 98.67
PRK03699394 putative transporter; Provisional 98.64
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 98.62
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 98.61
TIGR00880141 2_A_01_02 Multidrug resistance protein. 98.61
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.59
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 98.56
PRK15011393 sugar efflux transporter B; Provisional 98.55
KOG2615451 consensus Permease of the major facilitator superf 98.54
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 98.54
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 98.52
PRK09705393 cynX putative cyanate transporter; Provisional 98.49
PTZ00207591 hypothetical protein; Provisional 98.46
PRK09874408 drug efflux system protein MdtG; Provisional 98.45
PRK03545390 putative arabinose transporter; Provisional 98.43
PRK10489417 enterobactin exporter EntS; Provisional 98.41
PRK03633381 putative MFS family transporter protein; Provision 98.4
PRK12382392 putative transporter; Provisional 98.38
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.37
PRK10642490 proline/glycine betaine transporter; Provisional 98.37
PRK03893496 putative sialic acid transporter; Provisional 98.36
COG2211467 MelB Na+/melibiose symporter and related transport 98.36
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 98.34
PRK09952438 shikimate transporter; Provisional 98.34
TIGR00893399 2A0114 d-galactonate transporter. 98.32
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 98.32
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 98.3
TIGR00891405 2A0112 putative sialic acid transporter. 98.29
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.26
TIGR00889418 2A0110 nucleoside transporter. This family of prot 98.26
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 98.26
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.24
PRK09528420 lacY galactoside permease; Reviewed 98.24
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 98.21
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.18
TIGR00892455 2A0113 monocarboxylate transporter 1. 98.18
PRK10077479 xylE D-xylose transporter XylE; Provisional 98.15
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 98.15
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.15
PRK11663434 regulatory protein UhpC; Provisional 98.14
PRK11010491 ampG muropeptide transporter; Validated 98.14
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.13
TIGR00897402 2A0118 polyol permease family. This family of prot 98.12
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 98.12
PRK10091382 MFS transport protein AraJ; Provisional 98.12
TIGR00902382 2A0127 phenyl proprionate permease family protein. 98.07
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 98.07
PLN00028476 nitrate transmembrane transporter; Provisional 98.07
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 98.06
PRK15402406 multidrug efflux system translocase MdfA; Provisio 98.04
PRK15075434 citrate-proton symporter; Provisional 98.03
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 98.02
PRK09848448 glucuronide transporter; Provisional 98.02
PF13347428 MFS_2: MFS/sugar transport protein 98.02
PRK10504471 putative transporter; Provisional 98.01
PRK10133438 L-fucose transporter; Provisional 98.0
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.97
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 97.96
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 97.95
PRK14995495 methyl viologen resistance protein SmvA; Provision 97.95
TIGR00895398 2A0115 benzoate transport. 97.95
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 97.92
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 97.9
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 97.9
PRK10406432 alpha-ketoglutarate transporter; Provisional 97.89
PRK11902402 ampG muropeptide transporter; Reviewed 97.88
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 97.87
TIGR00900365 2A0121 H+ Antiporter protein. 97.87
COG2270438 Permeases of the major facilitator superfamily [Ge 97.87
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 97.86
PRK09669444 putative symporter YagG; Provisional 97.83
PRK10473392 multidrug efflux system protein MdtL; Provisional 97.82
TIGR00896355 CynX cyanate transporter. This family of proteins 97.81
COG2270438 Permeases of the major facilitator superfamily [Ge 97.8
PRK12307426 putative sialic acid transporter; Provisional 97.8
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 97.79
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 97.78
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 97.78
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 97.78
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 97.78
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 97.77
PRK10054395 putative transporter; Provisional 97.77
PRK10213394 nepI ribonucleoside transporter; Reviewed 97.77
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 97.77
KOG3762618 consensus Predicted transporter [General function 97.71
TIGR00881379 2A0104 phosphoglycerate transporter family protein 97.71
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 97.7
PRK11195393 lysophospholipid transporter LplT; Provisional 97.69
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 97.68
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 97.68
PRK10429473 melibiose:sodium symporter; Provisional 97.67
TIGR01272310 gluP glucose/galactose transporter. Disruption of 97.65
KOG2533495 consensus Permease of the major facilitator superf 97.63
PRK11646400 multidrug resistance protein MdtH; Provisional 97.6
TIGR00901356 2A0125 AmpG-related permease. 97.57
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 97.52
PRK11043401 putative transporter; Provisional 97.51
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 97.5
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 97.49
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.49
TIGR00898505 2A0119 cation transport protein. 97.42
PRK11462460 putative transporter; Provisional 97.39
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 97.38
COG2211467 MelB Na+/melibiose symporter and related transport 97.38
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.31
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 97.2
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 97.19
PF1283277 MFS_1_like: MFS_1 like family 97.16
COG2807395 CynX Cyanate permease [Inorganic ion transport and 97.13
KOG2563480 consensus Permease of the major facilitator superf 96.92
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 96.91
KOG1330 493 consensus Sugar transporter/spinster transmembrane 96.87
KOG2325488 consensus Predicted transporter/transmembrane prot 96.84
TIGR00880141 2_A_01_02 Multidrug resistance protein. 96.75
PRK11652394 emrD multidrug resistance protein D; Provisional 96.65
COG0477338 ProP Permeases of the major facilitator superfamil 96.63
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 96.6
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 96.58
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 96.56
KOG0569485 consensus Permease of the major facilitator superf 96.42
KOG3626735 consensus Organic anion transporter [Secondary met 96.37
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 96.35
KOG3098461 consensus Uncharacterized conserved protein [Funct 96.31
KOG2532466 consensus Permease of the major facilitator superf 96.28
PRK15403413 multidrug efflux system protein MdtM; Provisional 96.19
KOG3764 464 consensus Vesicular amine transporter [Intracellul 96.12
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 95.89
PRK10207489 dipeptide/tripeptide permease B; Provisional 95.82
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 95.82
TIGR00805 633 oat sodium-independent organic anion transporter. 95.76
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 95.71
PRK09584500 tppB putative tripeptide transporter permease; Rev 95.45
COG0738422 FucP Fucose permease [Carbohydrate transport and m 95.38
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 94.66
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 94.6
KOG2533 495 consensus Permease of the major facilitator superf 94.59
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 94.23
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 93.64
PTZ00207591 hypothetical protein; Provisional 93.54
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 93.46
TIGR00788468 fbt folate/biopterin transporter. The only functio 92.84
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 92.19
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 91.58
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 91.09
PRK03612521 spermidine synthase; Provisional 89.47
KOG2816463 consensus Predicted transporter ADD1 (major facili 88.78
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 86.68
KOG0637498 consensus Sucrose transporter and related proteins 85.78
KOG3626 735 consensus Organic anion transporter [Secondary met 84.8
KOG0254 513 consensus Predicted transporter (major facilitator 84.7
KOG2325 488 consensus Predicted transporter/transmembrane prot 84.32
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 83.78
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 82.92
PRK15462 493 dipeptide/tripeptide permease D; Provisional 82.09
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-81  Score=673.49  Aligned_cols=484  Identities=31%  Similarity=0.452  Sum_probs=437.4

Q ss_pred             hhhhhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc-
Q 035916            7 SDVFVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK-   84 (506)
Q Consensus         7 ~~~fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~-   84 (506)
                      -||+++||. .||+.|++..++.+..+|+..++.|.|..++.|++||++||.|+|||+||.+++.++.+|..++++++. 
T Consensus        48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~  127 (571)
T KOG1237|consen   48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMI  127 (571)
T ss_pred             HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            479999995 999999999999999999999999999999999999999999999999999999999999999888766 


Q ss_pred             ----c-c---------cc--CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH
Q 035916           85 ----P-E---------CI--GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL  148 (506)
Q Consensus        85 ----~-~---------~~--~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i  148 (506)
                          | .         |.  +..+...++.++.++++|+|+.|||+.++++||+++.++++++    ++.++|||+|+.+
T Consensus       128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~----~~~~fFnW~yf~~  203 (571)
T KOG1237|consen  128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVK----GIPSFFNWFYFSQ  203 (571)
T ss_pred             hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhh----CcccchhHHHHHH
Confidence                2 2         22  2346678999999999999999999999999999988888877    7889999999999


Q ss_pred             -HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccc
Q 035916          149 -VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASEL  223 (506)
Q Consensus       149 -iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l  223 (506)
                       .|.+++.++ .|+   .||.++|.++++.|.+++++|+.+++.|++++|.|+|++++.+|++++.+|++.+.+.+.+.+
T Consensus       204 ~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~  283 (571)
T KOG1237|consen  204 NGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEEL  283 (571)
T ss_pred             HHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhc
Confidence             999999999 999   999999999999999999999999999999999999999999999999999988777654333


Q ss_pred             cccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHH
Q 035916          224 YERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLL  303 (506)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~  303 (506)
                       +. ........+++++++++|+|++..+.|.+++...+||+.|+.+||||+|+++|++|+|.+.++||+++.|+.|.++
T Consensus       284 -~~-~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v  361 (571)
T KOG1237|consen  284 -YY-DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV  361 (571)
T ss_pred             -cc-cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence             10 0011133345778899999998766555556677999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccc------hhHhHHHHHHHHHHHHHH
Q 035916          304 EQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG------FAMSMILSILCCVTAAIV  377 (506)
Q Consensus       304 ~q~~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~------ig~G~~l~~ls~~~~~~~  377 (506)
                      +|+.+||++++.++++|+++++.++.+.+++++|++|++.+|+.   ||.+++|++      ||+|+++.+++|.+++.+
T Consensus       362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~---~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~v  438 (571)
T KOG1237|consen  362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFA---RKLTGNPFGITPLQRIGIGLVLSILSMAVAGIV  438 (571)
T ss_pred             hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhh---hhhcCCCCCCChhheeeccchHHHHHHHHHHHH
Confidence            99999999998349999999999999999999999999999999   877776632      999999999999999999


Q ss_pred             HHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhh
Q 035916          378 ETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLS  457 (506)
Q Consensus       378 e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l  457 (506)
                      |.+|++.+.++     ..+.+++|++||+|||+|+|+||+|.+++++||+|+|||++|||+++++|+++.|+|++++..+
T Consensus       439 E~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~L  513 (571)
T KOG1237|consen  439 EAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVL  513 (571)
T ss_pred             HHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988751     1245789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccCCcCCCC-CCCCcchhHHHHHHHHHHHHHHHHhhhhhcC
Q 035916          458 VYYAGIISERIGKHNWFQ-DTLNLSRLDNYYWLLAALTAANLAVLIIAAM  506 (506)
Q Consensus       458 ~~~~~~~t~~~~~~~w~~-~~ln~~~l~~~~~lla~l~~v~~~~f~~~a~  506 (506)
                      ++++++.|..  ..+|++ +|+|++|+|+|||+++.+..+|+..|.+++|
T Consensus       514 v~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~  561 (571)
T KOG1237|consen  514 VSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAK  561 (571)
T ss_pred             HHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEE
Confidence            9999998853  368999 9999999999999999999999999998874

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
2xut_A524 Proton/peptide symporter family protein; transport 8e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 Back     alignment and structure
 Score =  118 bits (298), Expect = 8e-29
 Identities = 74/521 (14%), Positives = 150/521 (28%), Gaps = 89/521 (17%)

Query: 21  YLT------EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTA 74
           +L           +    A  + + F    +  PL   ++ D    KY  IL  S  Y  
Sbjct: 38  FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97

Query: 75  VIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEE----- 129
              FL        I E      YT L LIA G  G    +  F+ DQ   F +       
Sbjct: 98  GHAFLA-------IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQ---FDQSNKSLAQ 147

Query: 130 --FSMSFRPQLIIF-------SFWGLSLVPNILSIAFLFIKSWKIKFGILAMFTTVSTLV 180
             F         +F       SF+    +P +L           + FGI  +   V+T+ 
Sbjct: 148 KAFD--------MFYFTINFGSFFASLSMPLLLKNF-----GAAVAFGIPGVLMFVATVF 194

Query: 181 FLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYE----RSDINDLYVVP 236
           F  G   Y    P+       + V  +++         +   +       S    L  +P
Sbjct: 195 FWLGRKRYIHMPPEPKDPHGFLPVIRSALLT-KVEGKGNIGLVLALIGGVSAAYALVNIP 253

Query: 237 HSRGLRWLDKAAIILP---NKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGV 293
               +  L  A +++          Q     +      V+  + ++ ++ +         
Sbjct: 254 TLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWS 313

Query: 294 VSSIGNTFLLEQAEVINGKDGGNF-------SFGPLLLLLFYYISKGRFTAFYEG-FVGH 345
           +     +  + QA          +       +  PLL++L           F        
Sbjct: 314 LFDQKASTWILQAND---MVKPQWFEPAMMQALNPLLVML--------LIPFNNFVLYPA 362

Query: 346 LTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWL 405
           +  +G   +  +      + ++ L  +    ++                D    +S+FW 
Sbjct: 363 IERMGVK-LTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQ 408

Query: 406 LPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIIS 465
           +  + LL   +         F   Q P+ +   +   +  ++    +G+   +     + 
Sbjct: 409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT---VGNLWVLLANVSVK 465

Query: 466 ERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM 506
                    Q  ++++      +  A        V  + A 
Sbjct: 466 SPTVTEQIVQTGMSVTAFQ--MFFFAGFAILAAIVFALYAR 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
2xut_A524 Proton/peptide symporter family protein; transport 99.96
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.93
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.69
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.66
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.58
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.51
2cfq_A417 Lactose permease; transport, transport mechanism, 99.31
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 98.72
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 98.62
2cfq_A417 Lactose permease; transport, transport mechanism, 98.35
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 98.28
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 98.03
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 97.52
2xut_A 524 Proton/peptide symporter family protein; transport 96.33
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
Probab=99.96  E-value=6.4e-29  Score=265.76  Aligned_cols=457  Identities=13%  Similarity=0.122  Sum_probs=296.2

Q ss_pred             hhhhhhhch-hHHHHHHhhhcc------ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhh
Q 035916            7 SDVFVAFVF-WMMMDYLTEVWM------ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFL   79 (506)
Q Consensus         7 ~~~fs~yg~-~~l~~yl~~~l~------~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l   79 (506)
                      -+++++|+. +.+..|+++++|      ++..+++.+.+.+.....++++++|+++||++|||+++.++..+..++.+++
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            356778885 778899999999      9999999999999999999999999999994499999999999999998887


Q ss_pred             cccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-
Q 035916           80 FYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-  157 (506)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-  157 (506)
                      ..+.       .+.+.+++++++.++|.|...|+..++++|.+++++   |.    +....+++++.+. +|..+++.+ 
T Consensus       103 ~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~----~~~~~~~~~~~~~~~g~~~g~~~~  168 (524)
T 2xut_A          103 AIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KS----LAQKAFDMFYFTINFGSFFASLSM  168 (524)
T ss_dssp             HHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TT----HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7662       145678889999999999999999999999986543   21    3457788899999 999999999 


Q ss_pred             HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCC-c
Q 035916          158 LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDL-Y  233 (506)
Q Consensus       158 ~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~-~  233 (506)
                      +++   .||+..|.+.++..+++.+.+...++.+.+++|++++..+..+.+..+.++++.+.+ +.....+.+..... .
T Consensus       169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  247 (524)
T 2xut_A          169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAY  247 (524)
T ss_dssp             THHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhh
Confidence            766   799999999988888777766665555444444443333333333333332211000 00000000000000 0


Q ss_pred             cccCCCCcchhhhhhhhcCcccccccccCcc-------cccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHH
Q 035916          234 VVPHSRGLRWLDKAAIILPNKTLRQQERNRW-------RLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQA  306 (506)
Q Consensus       234 ~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~  306 (506)
                      ...+.+....+..+........ ......||       +.+++++.++.|++++.++++.....++..+.|..+.+..|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (524)
T 2xut_A          248 ALVNIPTLGIVAGLCCAMVLVM-GFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA  326 (524)
T ss_dssp             TGGGTTTTCSSHHHHHHHHHHH-HHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhh-cccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhH
Confidence            0000000000000000000000 00011222       113334556778888888888888899999999988888887


Q ss_pred             HHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc--c-hhHhHHHHHHHHHHHHHHHHHHHh
Q 035916          307 EVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV--G-FAMSMILSILCCVTAAIVETRRLD  383 (506)
Q Consensus       307 ~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~--~-ig~G~~l~~ls~~~~~~~e~~r~~  383 (506)
                      .+++.+.   + .+.+.+..++++..++..|+.+++..|..   +|++++++  + +..|+++.+++++..+..+..+  
T Consensus       327 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  397 (524)
T 2xut_A          327 NDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAI---ERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--  397 (524)
T ss_dssp             HHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--
T ss_pred             HhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH---HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            6655431   2 47788889999999999999999988877   55433222  2 7788888887776655443110  


Q ss_pred             hhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcc
Q 035916          384 VVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGI  463 (506)
Q Consensus       384 ~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~  463 (506)
                         +        ...+.+.+|+++.+++.++++.+..+...+++.+.+|+++||..+|++....++|+.+++.+...+..
T Consensus       398 ---~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          398 ---D--------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             ---T--------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             ---c--------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               0        11236788999999999999999999999999999999999999999999999999999988776553


Q ss_pred             cccccCCcCCCCC-CCCcchhHHHHHHHHHHHHHHHHhhhhhc
Q 035916          464 ISERIGKHNWFQD-TLNLSRLDNYYWLLAALTAANLAVLIIAA  505 (506)
Q Consensus       464 ~t~~~~~~~w~~~-~ln~~~l~~~~~lla~l~~v~~~~f~~~a  505 (506)
                      .+    +++|.++ +.+..  .+.|++.+++.+++.++++++.
T Consensus       467 ~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          467 PT----VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             CH----HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred             cc----ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence            22    1245432 22222  2337788888888887766543
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.65
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.64
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 98.34
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 98.13
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2e-14  Score=145.95  Aligned_cols=148  Identities=13%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916           16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL   95 (506)
Q Consensus        16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~   95 (506)
                      +.+..++. ++|+|.++.+.+.+++.....++.+++|+++|| +|||+++.++.++..++.++.+.....    ..+...
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  118 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----TSSIAV  118 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHH----HSSSSH
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchh----hhhHHH
Confidence            34445665 589999999999999999999999999999999 799999999999999988877654211    013457


Q ss_pred             HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHH
Q 035916           96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGI  169 (506)
Q Consensus        96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i  169 (506)
                      +++.+.+.++|.|...|...++++|.++++          +|...++++..+. +|..+++.+ ..+    .+|+..|.+
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQK----------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTT----------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHhh----------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            788899999999999999999999877432          2457788888899 999988877 544    578999888


Q ss_pred             HHHHHHHHHH
Q 035916          170 LAMFTTVSTL  179 (506)
Q Consensus       170 ~~~~~~~~~~  179 (506)
                      .++...+..+
T Consensus       189 ~~~~~~~~~~  198 (447)
T d1pw4a_         189 PAFCAILVAL  198 (447)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhHHHHHH
Confidence            7766554444
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure