Citrus Sinensis ID: 035926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDKSSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQKPSGPGKKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccEEEEccccccccccccccccccEEEEEcccccccccEEEEccccccccccccccccHHccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHcHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
masfaisassqracssnhvtkkqpsqtrtgrslgtkqVSNVVALnvdgqksldiveqqdkssksssrtskpnvaenddldtqsshpkfndarwkngtwdlnmfvkdgkmdWDAVIVAEARRRKFLemypdsatneepvvfrssiIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALtgldvvgqtgnfickagVFVTVAGIILFRKNEDFQNLKNLADEATLYDKqwqaswqdqkpsgpgkki
Flexible Loop (DISEMBL)
masfaisassqracssnhvtkkqpsqtrtgrslgtkqVSNVValnvdgqksldiveqqdkssksssrtskpnvaenddldtqsshpkfndarwkngTWDLNMFVKDGKMDWDAVIVAEARRRKFLemypdsatneepVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWqaswqdqkpsgpgkki
Low Complexity Region (SEG)
MASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDkssksssrtskPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQKPSGPGKKI
Disordered region (IsUnstruct)
******************************************************************************************ARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQ***************
Disordered Region (DISOPRED)
***************************************************************************************FNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQ*****************
Disordered Region (DISEMBL)
********************************LGTKQVSNVVALNVDGQKSLDI******************************HPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQ***************
Disordered Region (DISPRO)
**********QRACSSNHVT******************SNV***N***QKSLDIVEQ*****************************KFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQ***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDKSSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQKPSGPGKKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
225454884	259	PREDICTED: uncharacterized protein LOC10	0.959	0.915	0.687	2e-95
224155125	249	light harvesting protein 3 [Populus tric	0.987	0.979	0.647	7e-92
255539943	240	transcription factor, putative [Ricinus	0.919	0.945	0.647	3e-86
297737381	226	unnamed protein product [Vitis vinifera]	0.866	0.946	0.674	9e-84
449528459	256	PREDICTED: uncharacterized protein LOC10	0.947	0.914	0.555	2e-68
449458317	220	PREDICTED: uncharacterized protein LOC10	0.765	0.859	0.616	8e-68
18414927	262	chlorophyll A-B binding protein [Arabido	0.995	0.938	0.469	6e-61
2245118	350	hypothetical protein [Arabidopsis thalia	0.894	0.631	0.513	6e-61
21555799	262	Lil3 protein [Arabidopsis thaliana]	0.995	0.938	0.469	7e-61
297804424	261	Lil3 protein [Arabidopsis lyrata subsp.	0.995	0.942	0.469	7e-60

>gi|225454884|ref|XP_002275690.1| PREDICTED: uncharacterized protein LOC100259582 [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 199/243 (81%), Gaps = 6/243 (2%)

Query: 2   ASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDK- 60
           +S AI+AS QRACS +HVTKKQ  Q R  RS+GTKQ ++VVAL  +G K L+I EQ+ K 
Sbjct: 3   SSIAITASLQRACSPHHVTKKQQPQARPARSMGTKQETHVVALETEGPKGLNIAEQEAKF 62

Query: 61  -----SSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVI 115
                SS ++SR +K +      LDT+ S PKF+D RWKNGTWDLNMFV+DGKMDWD VI
Sbjct: 63  GFNAGSSTTTSRDAKDDDEAGSGLDTEPSAPKFSDERWKNGTWDLNMFVRDGKMDWDGVI 122

Query: 116 VAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGY 175
           VAEARRRKFLEMYP+SATN+EPV+FRSSIIPWWAW++ S+L +AEL+NGRAAMVGFFM Y
Sbjct: 123 VAEARRRKFLEMYPESATNQEPVLFRSSIIPWWAWMMRSHLQEAELINGRAAMVGFFMAY 182

Query: 176 IVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASW 235
           +VDALTGLDVVGQTGN ICKAG+ VTV G+I FR+ +DF +L+ LADEATLYDKQWQ+SW
Sbjct: 183 LVDALTGLDVVGQTGNLICKAGLLVTVMGVIFFRRAQDFDSLRKLADEATLYDKQWQSSW 242

Query: 236 QDQ 238
           QDQ
Sbjct: 243 QDQ 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224155125|ref|XP_002337566.1| light harvesting protein 3 [Populus trichocarpa] gi|222839577|gb|EEE77914.1| light harvesting protein 3 [Populus trichocarpa]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 191/244 (78%)

Query: 1   MASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDK 60
           MAS +ISAS  R C S+ VTKKQ  Q RT RSLG+KQ +  V LNV+GQ+ + + EQQ+K
Sbjct: 1   MASISISASLHRTCGSHRVTKKQRPQARTARSLGSKQATRAVTLNVEGQRGVGMSEQQEK 60

Query: 61  SSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEAR 120
            + ++  ++K N    + L+T+ S PKF D RWK GTWDLNMFV+DGKMDWD +I AEA+
Sbjct: 61  PALATGGSNKANDKLENGLETKHSVPKFIDERWKKGTWDLNMFVRDGKMDWDGLIEAEAK 120

Query: 121 RRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDAL 180
           RRK +E+YP++ TNEEPV+FRSSIIPWWAWL  SYLP+AELLNGRAAMVGFF  YIV+ L
Sbjct: 121 RRKIIELYPNTCTNEEPVLFRSSIIPWWAWLKRSYLPEAELLNGRAAMVGFFAAYIVEGL 180

Query: 181 TGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQKP 240
           TGLD+VGQTGNFICK  +FVTV GIILFR+ EDF+NL+ L DEAT YDKQWQASW+DQ  
Sbjct: 181 TGLDMVGQTGNFICKTVLFVTVTGIILFRRTEDFKNLRKLVDEATFYDKQWQASWKDQNA 240

Query: 241 SGPG 244
              G
Sbjct: 241 PNTG 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539943|ref|XP_002511036.1| transcription factor, putative [Ricinus communis] gi|223550151|gb|EEF51638.1| transcription factor, putative [Ricinus communis]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 184/238 (77%), Gaps = 11/238 (4%)

Query: 1   MASFAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDK 60
           MAS AISAS QRACSSNHVTKKQ  Q R  R LGTKQV++VV LNV+GQK L I EQQ+K
Sbjct: 1   MASVAISASLQRACSSNHVTKKQQPQARPARPLGTKQVTHVVTLNVEGQKGLSISEQQEK 60

Query: 61  SSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEAR 120
               ++ + + +   +   + +SS P F D RW+ G WDLNMFVKD           EA+
Sbjct: 61  PPLDANGSKRADDKSDHGPEAESSTPTFIDERWQMGNWDLNMFVKD-----------EAK 109

Query: 121 RRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDAL 180
           RRKFLE+YP+++TNEEPV+FRSSIIPWW WL  SYLP+AEL+NGRAAMVGFFM Y+VDAL
Sbjct: 110 RRKFLELYPEASTNEEPVLFRSSIIPWWVWLKRSYLPEAELINGRAAMVGFFMSYVVDAL 169

Query: 181 TGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQ 238
           TGLD+VGQ GN +CKAG+ VTV  IIL R+ EDF+NL+NLADEATLYDKQWQ+SW+DQ
Sbjct: 170 TGLDMVGQAGNLVCKAGLLVTVISIILLRRTEDFKNLRNLADEATLYDKQWQSSWKDQ 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737381|emb|CBI26582.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 151/224 (67%), Positives = 180/224 (80%), Gaps = 10/224 (4%)

Query: 33  LGTKQVSNVVALNVDGQKSLDIVEQQDK------SSKSSSRTSKPNVAENDDLDTQSSHP 86
           +GTKQ ++VVAL  +G K L+I EQ+ K      SS ++SR +K +      LDT+ S P
Sbjct: 1   MGTKQETHVVALETEGPKGLNIAEQEAKFGFNAGSSTTTSRDAKDDDEAGSGLDTEPSAP 60

Query: 87  KFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIP 146
           KF+D RWKNGTWDLNMFV+DGKMDWD VIVAEARRRKFLEMYP+SATN+EPV+FRSSIIP
Sbjct: 61  KFSDERWKNGTWDLNMFVRDGKMDWDGVIVAEARRRKFLEMYPESATNQEPVLFRSSIIP 120

Query: 147 WWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGII 206
           WWAW++ S+L +AEL+NGRAAMVGFFM Y+VDALTGLDVVGQTGN ICKAG+ VTV G+I
Sbjct: 121 WWAWMMRSHLQEAELINGRAAMVGFFMAYLVDALTGLDVVGQTGNLICKAGLLVTVMGVI 180

Query: 207 LFRKNEDFQNLKNLADEATLYDKQWQASWQDQKP----SGPGKK 246
            FR+ +DF +L+ LADEATLYDKQWQ+SWQDQ      SG G K
Sbjct: 181 FFRRAQDFDSLRKLADEATLYDKQWQSSWQDQDAGDGDSGRGGK 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528459|ref|XP_004171222.1| PREDICTED: uncharacterized protein LOC101227616 [Cucumis sativus]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/236 (55%), Positives = 167/236 (70%), Gaps = 2/236 (0%)

Query: 4   FAISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDKSSK 63
             + A S +  S  H  K++    + G S  TK  +  V   +D     D   QQ +   
Sbjct: 23  LCLIAKSIQFKSCLHEEKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQYRRGN 82

Query: 64  SSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRK 123
           ++S   K     NDD +      +F D RWKNGTWDLNMFV++GKMDW+ VIV EA+RRK
Sbjct: 83  AASAVVKEEEDNNDDWNNNGE--RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRK 140

Query: 124 FLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGL 183
           FLE++P++ATN+EPVVFRSSIIPWW WL  SYLPQAELLNGRAAM+GFFMGY VDALTG+
Sbjct: 141 FLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGV 200

Query: 184 DVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQK 239
            +VGQ+GNFICK  +F+TV G++LFR++ED +NL+N+A+EAT YDKQWQ+SWQ  K
Sbjct: 201 GIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458317|ref|XP_004146894.1| PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus]

 Score =  262 bits (670), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 157/193 (81%), Gaps = 4/193 (2%)

Query: 51  SLDIVEQQDKSSKSSSRTSKPNVA----ENDDLDTQSSHPKFNDARWKNGTWDLNMFVKD 106
           +LD+V + D +++   R +  +      E+++ D  ++  +F D RWKNGTWDLNMFV++
Sbjct: 28  TLDVVNRDDGAAQQYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQN 87

Query: 107 GKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRA 166
           GKMDW+ VIV EA+RRKFLE++P++ATN+EPVVFRSSIIPWW WL  SYLPQAELLNGRA
Sbjct: 88  GKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRA 147

Query: 167 AMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATL 226
           AM+GFFMGY VDALTG+ +VGQ+GNFICK  +F+TV G++LFR++ED +NL+N+A+EAT 
Sbjct: 148 AMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATF 207

Query: 227 YDKQWQASWQDQK 239
           YDKQWQ+SWQ  K
Sbjct: 208 YDKQWQSSWQKPK 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414927|ref|NP_567532.1| chlorophyll A-B binding protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein [Arabidopsis thaliana] gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w [Arabidopsis thaliana] gi|18491101|gb|AAL69517.1| AT4g17600/dl4835w [Arabidopsis thaliana] gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis thaliana] gi|23198388|gb|AAN15721.1| Lil3 protein [Arabidopsis thaliana] gi|23306350|gb|AAN17402.1| Lil3 protein [Arabidopsis thaliana] gi|25084208|gb|AAN72196.1| Lil3 protein [Arabidopsis thaliana] gi|332658519|gb|AEE83919.1| chlorophyll A-B binding protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 164/260 (63%), Gaps = 14/260 (5%)

Query: 1   MASFAISASSQRACSSNHVTKKQPSQTRTGR---------SLGTKQVSNVVALNVDGQKS 51
           MA F+   SS    + N + K   S   + R         S  +   S   A++V+  + 
Sbjct: 1   MALFSPPISSSSLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEP 60

Query: 52  LDIVEQQDKSS-----KSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKD 106
           ++++ ++   S     K  + T+K    E +++ T  S  KF DARW NGTWDL  F KD
Sbjct: 61  VEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKD 120

Query: 107 GKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRA 166
           GK DWD+VIVAEA+RRK+LE  P++ +N+EPV+F +SIIPWWAW+   +LP+AELLNGRA
Sbjct: 121 GKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180

Query: 167 AMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATL 226
           AM+GFFM Y VD+LTG+ +V Q GNF CK  +FV VAG++  RKNED   LKNL DE TL
Sbjct: 181 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTL 240

Query: 227 YDKQWQASWQDQKPSGPGKK 246
           YDKQWQA+W++      G K
Sbjct: 241 YDKQWQAAWKNDDDESLGSK 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245118|emb|CAB10540.1| hypothetical protein [Arabidopsis thaliana] gi|7268512|emb|CAB78763.1| hypothetical protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 157/230 (68%), Gaps = 9/230 (3%)

Query: 25  SQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDKSS-----KSSSRTSKPNVAENDDL 79
           S TR     G+   S   A++V+  + ++++ ++   S     K  + T+K    E +++
Sbjct: 36  SVTRASSDSGS--TSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEM 93

Query: 80  DTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVV 139
            T  S  KF DARW NGTWDL  F KDGK DWD+VIVAEA+RRK+LE  P++ +N+EPV+
Sbjct: 94  KTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVL 153

Query: 140 FRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVF 199
           F +SIIPWWAW+   +LP+AELLNGRAAM+GFFM Y VD+LTG+ +V Q GNF CK  +F
Sbjct: 154 FDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLF 213

Query: 200 VTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQ--DQKPSGPGKKI 247
           V VAG++  RKNED   LKNL DE TLYDKQWQA+W+  D +  G  KK+
Sbjct: 214 VAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDESLGSKKKL 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555799|gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 164/260 (63%), Gaps = 14/260 (5%)

Query: 1   MASFAISASSQRACSSNHVTKKQPSQTRTGR---------SLGTKQVSNVVALNVDGQKS 51
           MA F+   SS    + N + K   S   + R         S  +   S   A++V+  + 
Sbjct: 1   MALFSPPISSSSLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEP 60

Query: 52  LDIVEQQDKSS-----KSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKD 106
           ++++ ++   S     K  + T+K    E +++ T  S  KF DARW NGTWDL  F KD
Sbjct: 61  VEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVIKFQDARWINGTWDLKQFEKD 120

Query: 107 GKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRA 166
           GK DWD+VIVAEA+RRK+LE  P++ +N+EPV+F +SIIPWWAW+   +LP+AELLNGRA
Sbjct: 121 GKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180

Query: 167 AMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATL 226
           AM+GFFM Y VD+LTG+ +V Q GNF CK  +FV VAG++  RKNED   LKNL DE TL
Sbjct: 181 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTL 240

Query: 227 YDKQWQASWQDQKPSGPGKK 246
           YDKQWQA+W++      G K
Sbjct: 241 YDKQWQAAWKNDDDESLGSK 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804424|ref|XP_002870096.1| Lil3 protein [Arabidopsis lyrata subsp. lyrata] gi|297315932|gb|EFH46355.1| Lil3 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 161/260 (61%), Gaps = 14/260 (5%)

Query: 1   MASFAISASSQRACSSNHVTKKQPSQTRTGR---------SLGTKQVSNVVALNVDGQKS 51
           MA F+   SS    + N + K   S   T R         S  +   S   A  V+  + 
Sbjct: 1   MALFSPPISSSSLQNPNFIPKFSFSLLSTNRFSLLSVTRASSDSGSTSPTSATAVEAPEP 60

Query: 52  LDIVEQQDKSS-----KSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKD 106
           ++++ ++   S     K    T+K    E +++ T  +  KF DARW NGTWDL  F KD
Sbjct: 61  VEVIIKEAPQSTPPVTKEEITTAKNVAVEGEEMKTTETVIKFQDARWINGTWDLKQFEKD 120

Query: 107 GKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRA 166
           GK DWD+VIVAEA+RRK+LE  P++ +N+EPV+F +SIIPWWAW+   +LP+AELLNGRA
Sbjct: 121 GKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180

Query: 167 AMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATL 226
           AM+GFFM Y VD+LTG+ +V Q GNF CK  +FV VAG++  RKNED   LKNL DE TL
Sbjct: 181 AMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFDETTL 240

Query: 227 YDKQWQASWQDQKPSGPGKK 246
           YDKQWQA+W++      G K
Sbjct: 241 YDKQWQAAWKNDDDESLGSK 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2129296	262	LIL3:1 [Arabidopsis thaliana (	0.890	0.839	0.511	1.2e-58
TAIR|locus:2151972	258	LIL3:2 "AT5G47110" [Arabidopsi	0.647	0.620	0.606	4.9e-53

TAIR|locus:2129296 LIL3:1 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 116/227 (51%), Positives = 150/227 (66%)

Query:    25 SQTRTGRSLGTKQVSNVVALNVDGQKSLDIV----EQQDXXXXXXXXXXXPNVA-ENDDL 79
             S TR     G+   S   A++V+  + ++++     Q              NVA E +++
Sbjct:    36 SVTRASSDSGS--TSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEM 93

Query:    80 DTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVV 139
              T  S  KF DARW NGTWDL  F KDGK DWD+VIVAEA+RRK+LE  P++ +N+EPV+
Sbjct:    94 KTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVL 153

Query:   140 FRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVF 199
             F +SIIPWWAW+   +LP+AELLNGRAAM+GFFM Y VD+LTG+ +V Q GNF CK  +F
Sbjct:   154 FDTSIIPWWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLF 213

Query:   200 VTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQDQKPSGPGKK 246
             V VAG++  RKNED   LKNL DE TLYDKQWQA+W++      G K
Sbjct:   214 VAVAGVLFIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDESLGSK 260

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2151972 LIL3:2 "AT5G47110" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 97/160 (60%), Positives = 123/160 (76%)

Query:    87 KFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIP 146
             K+ +A+W NGTWDL  F KDGK DWD+VIV+EA+RRK+LE  P++ +N+E VVF +SIIP
Sbjct:    98 KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query:   147 WWAWLLHSYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGII 206
             WWAW+   +LP+AELLNGRAAM+GFFM Y VD+LTG+ +V Q GNF CK  +FV VAG++
Sbjct:   158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query:   207 LFRKNEDFQNLKNLADEATLYDKQWQASWQDQKPSGPGKK 246
               RKNED   LK+L DE TLYDKQWQA+W++   S    K
Sbjct:   218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKEPDSSTVSSK 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      247       236   0.00089  113 3  11 22  0.43    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  204 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.60u 0.09s 18.69t   Elapsed:  00:00:15
  Total cpu time:  18.60u 0.09s 18.69t   Elapsed:  00:00:15
  Start:  Fri May 10 15:01:11 2013   End:  Fri May 10 15:01:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014095001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (259 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
PLN00014	250	PLN00014, PLN00014, light-harvesting-like protein	1e-117
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	0.001

>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional

 Score =  333 bits (856), Expect = e-117
 Identities = 128/249 (51%), Positives = 158/249 (63%), Gaps = 7/249 (2%)

Query: 5   AISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQD----- 59
            IS S  RA SS  V  K   Q+R+ RSLG K   ++V++ V       I E++      
Sbjct: 1   MISMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLER 60

Query: 60  --KSSKSSSRTSKPNVAENDDLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVA 117
                  ++    P  A         S  KF D RWKNGTWDLN F KDGK DWDAVI A
Sbjct: 61  GGTLEGEAAAGKDPGPAAAAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDA 120

Query: 118 EARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSYLPQAELLNGRAAMVGFFMGYIV 177
           E  RRK+LE  P++++N+EPV+F +SIIPWWAW+   +LP+AELLNGRAAMVGFFM Y+V
Sbjct: 121 EVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLV 180

Query: 178 DALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASWQD 237
           D+LTG+ +V Q GNF CK  +FVTVAG++L RKNED   LK LADEAT YDKQWQA+W+D
Sbjct: 181 DSLTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNEDLDTLKKLADEATFYDKQWQATWKD 240

Query: 238 QKPSGPGKK 246
           Q        
Sbjct: 241 QDRPSTSSS 249

Length = 250

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 155 YLPQAELLNGRAAMVGFFMGYIV-DALTGLDVVGQTGNFICKAG------VFVTVAGIIL 207
              +AEL +GR AM+   +G +V + LT L  V     +  +AG      +   +A  IL
Sbjct: 8   RYREAELKHGRWAMLA-VLGALVPELLTKLGGVAGEPAWF-EAGGPLLPAIPTLLALQIL 65

Query: 208 F 208
            
Sbjct: 66  L 66

Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PLN00014	250	light-harvesting-like protein 3; Provisional	100.0
PHA02337	35	putative high light inducible protein	99.36
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.87
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.54
PLN00187	286	photosystem II light-harvesting complex II protein	98.53
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.36
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.28
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.28
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.2
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.08
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.07
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.05
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.95
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.9
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.87
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.84
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	97.84
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.78
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	97.78
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.76
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.73
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.67
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.66
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.62
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.59
PLN00187	286	photosystem II light-harvesting complex II protein	97.56
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	97.42
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.2
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	96.79
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	96.44
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	94.81
PLN02449	485	ferrochelatase	92.49

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=100.00  E-value=3.5e-82  Score=562.87  Aligned_cols=240  Identities=54%  Similarity=0.879  Sum_probs=214.7

Q ss_pred             eeccccccccccCccccccCCCCccCCcCCcccccceeeeeecCCCccchhhhcccCCCCCCCCC-CCCcccCC------
Q 035926            5 AISASSQRACSSNHVTKKQPSQTRTGRSLGTKQVSNVVALNVDGQKSLDIVEQQDKSSKSSSRTS-KPNVAEND------   77 (247)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------   77 (247)
                      +|+.|.++.|++++...++++++|+.+++++++..+.++++++.+++..+++  .+++....+.+ ....+.+.      
T Consensus         1 ~~~~sl~~~~~~~~~~~k~~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~pl~~gg~l~g~~a~gk~~~~aa   78 (250)
T PLN00014          1 MISMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISE--RKPSPLERGGTLEGEAAAGKDPGPAA   78 (250)
T ss_pred             CcccccCCCccccccccCCCcccccccccccccccceEEEeecccCCCCccc--cCCCccccCCCcccccccccCccccc
Confidence            4788999999999999999999999999999999999999999999777765  23333322222 21111111      


Q ss_pred             --CccccCCCCCccCCccccccccccccccCCCCChhhHHHHHHHhhhhhhhCCCCCCCCCCccccCCCchhhhhhhcCC
Q 035926           78 --DLDTQSSHPKFNDARWKNGTWDLNMFVKDGKMDWDAVIVAEARRRKFLEMYPDSATNEEPVVFRSSIIPWWAWLLHSY  155 (247)
Q Consensus        78 --~~~~~~~~~~f~d~rw~~g~wdl~~F~~~g~vdwdavI~AE~~rrk~le~~P~~ssn~~pvvfdtS~vPww~w~k~gf  155 (247)
                        ....+.+.++|+||||+||||||+||++||+||||+|||||++||||||+||++++|++||+||+||||||+||+|++
T Consensus        79 ~~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~  158 (250)
T PLN00014         79 AAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFH  158 (250)
T ss_pred             ccccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhcc
Confidence              111234689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhccccccccchhhhccc
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFICKAGVFVTVAGIILFRKNEDFQNLKNLADEATLYDKQWQASW  235 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g~~Ll~vtVagvil~rkneDl~~lk~L~~e~t~yDkqw~a~w  235 (247)
                      .+++|++|||+|||||++++++|++||+||++|+++++|++++|++++|++++|||+||++||+|+||+|||||||||||
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~gvlliRk~eDl~~lk~L~dE~TfYDKQWqAtW  238 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNEDLDTLKKLADEATFYDKQWQATW  238 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHheeeeehhhHHHHHHHHHhhhhHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCC
Q 035926          236 QDQKPSGPGKK  246 (247)
Q Consensus       236 ~~~~~~~~~~~  246 (247)
                      ||++++.++++
T Consensus       239 ~~~~~~s~~~~  249 (250)
T PLN00014        239 KDQDRPSTSSS  249 (250)
T ss_pred             cCCCCCCcccC
Confidence            99999977654

>PHA02337 putative high light inducible protein

Probab=99.36  E-value=6.2e-13  Score=89.28  Aligned_cols=32  Identities=38%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVV  186 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil  186 (247)
                      |+++||+||||+|||||++++++|++||++|.
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            57899999999999999999999999999875

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.87  E-value=2.7e-09  Score=93.99  Aligned_cols=36  Identities=39%  Similarity=0.532  Sum_probs=33.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHh-CcchHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALT-GLDVVGQTGN  191 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~T-G~gil~Qlg~  191 (247)
                      .+..|+||||+||+||+++++.|++| |+|+++|++.
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~  171 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG  171 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence            45679999999999999999999999 9999999975

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.54  E-value=3.5e-08  Score=80.76  Aligned_cols=76  Identities=21%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcch----HHHH-----H---HHHHHHHHHHHHHHhhhhccchhh------hh
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDV----VGQT-----G---NFICKAGVFVTVAGIILFRKNEDF------QN  216 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gi----l~Ql-----g---~~~g~~Ll~vtVagvil~rkneDl------~~  216 (247)
                      +.+++|++|||+||+||++.++.|+.++.+.    .++.     +   ......+..+.++|++...+....      +.
T Consensus        28 ~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~  107 (156)
T PF00504_consen   28 WYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGALEPWRQQGVPEPGEGGG  107 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSS
T ss_pred             HHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHhhhhhcccccCCccccc
Confidence            3568999999999999999999999988643    2222     1   111222345556677766655443      23


Q ss_pred             hhhccccccccchh
Q 035926          217 LKNLADEATLYDKQ  230 (247)
Q Consensus       217 lk~L~~e~t~yDkq  230 (247)
                      ....+++...||+-
T Consensus       108 ~~~~~pG~~~~dpl  121 (156)
T PF00504_consen  108 KDGRYPGDLGFDPL  121 (156)
T ss_dssp             SSSSSSSSSSSSTS
T ss_pred             ccccCccccccchh
Confidence            45677887778875

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.53  E-value=7.2e-08  Score=89.07  Aligned_cols=74  Identities=27%  Similarity=0.411  Sum_probs=55.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHH-----H--HHHH---------HHHHHHHHHHHhhhhccchhhhhhhh
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQ-----T--GNFI---------CKAGVFVTVAGIILFRKNEDFQNLKN  219 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Q-----l--g~~~---------g~~Ll~vtVagvil~rkneDl~~lk~  219 (247)
                      .+++|++|||+||+|+++.++.|+++|....+-     .  ..|+         ....+-+.++|++.++|+.+.+..+.
T Consensus       133 ~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~  212 (286)
T PLN00187        133 FRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKR  212 (286)
T ss_pred             HHHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence            458999999999999999999999887421100     0  0111         12234455799999999988888899


Q ss_pred             ccccccccch
Q 035926          220 LADEATLYDK  229 (247)
Q Consensus       220 L~~e~t~yDk  229 (247)
                      +|++..+||+
T Consensus       213 ~yPGg~~FDP  222 (286)
T PLN00187        213 LYPGGKFFDP  222 (286)
T ss_pred             CCCccccccc
Confidence            9999988997

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.36  E-value=2.9e-07  Score=84.07  Aligned_cols=75  Identities=16%  Similarity=0.235  Sum_probs=54.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH----------------HHH----HHHHHHHHHHHhhhhccchhhhh
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTG----------------NFI----CKAGVFVTVAGIILFRKNEDFQN  216 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg----------------~~~----g~~Ll~vtVagvil~rkneDl~~  216 (247)
                      +++|++|||+||+|+++.++.|++++.|++.+..                .|+    ..+.+.+.++|+++++|.+++.+
T Consensus        86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~  165 (262)
T PLN00048         86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYK  165 (262)
T ss_pred             HHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccC
Confidence            4899999999999999999999999888764321                011    12345566799999998776421


Q ss_pred             --------h-----------hhccccccccchhh
Q 035926          217 --------L-----------KNLADEATLYDKQW  231 (247)
Q Consensus       217 --------l-----------k~L~~e~t~yDkqw  231 (247)
                              +           ..+||+..+||+--
T Consensus       166 pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlG  199 (262)
T PLN00048        166 PGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLG  199 (262)
T ss_pred             CCcccccccccchhccccccccccccccccCccc
Confidence                    1           34688887888743

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.28  E-value=8.3e-07  Score=81.01  Aligned_cols=77  Identities=22%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH--------HHHHHHHHHHHHHhhhhccchhhhh------------
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGN--------FICKAGVFVTVAGIILFRKNEDFQN------------  216 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~--------~~g~~Ll~vtVagvil~rkneDl~~------------  216 (247)
                      +++|++|||+||+|++..++.|++||...++.-..        +...+.+.+.++|+++.+|..|+.+            
T Consensus        96 r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~  175 (255)
T PLN00170         96 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPW  175 (255)
T ss_pred             HHHHhhccHHHHHHHHhhhhHHHccCCChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCccccccccccc
Confidence            48999999999999999999999999865553211        1112224467899999999776531            


Q ss_pred             -----------hhhccccccccchhhhc
Q 035926          217 -----------LKNLADEATLYDKQWQA  233 (247)
Q Consensus       217 -----------lk~L~~e~t~yDkqw~a  233 (247)
                                 -...|+++.||||==-+
T Consensus       176 ~~~~~~f~~~~g~~~yPGG~~FDPLGl~  203 (255)
T PLN00170        176 SRTAENFANATGLQGYPGGKFFDPLGLA  203 (255)
T ss_pred             ccccccccccCCCcccCCCcccCccccc
Confidence                       03458888899985433

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.28  E-value=1e-06  Score=80.73  Aligned_cols=73  Identities=22%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHHHH-----HH--H----HHHHHHHHHHHHhhhhccchhhhh---------
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVGQT-----GN--F----ICKAGVFVTVAGIILFRKNEDFQN---------  216 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Ql-----g~--~----~g~~Ll~vtVagvil~rkneDl~~---------  216 (247)
                      +++|++|||+||+|+++.++.|++++.|++...     +.  +    .....+.+.++|++.+++..++.+         
T Consensus       101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~  180 (267)
T PLN00098        101 AQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPK  180 (267)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccc
Confidence            489999999999999999999999988775422     10  1    112233445789999987655421         


Q ss_pred             --------hhhccccccccch
Q 035926          217 --------LKNLADEATLYDK  229 (247)
Q Consensus       217 --------lk~L~~e~t~yDk  229 (247)
                              ....||+.-+|||
T Consensus       181 ~~~~~~~~~d~~yPGg~~FDP  201 (267)
T PLN00098        181 LPNKTNPKPDVGYPGGLWFDP  201 (267)
T ss_pred             ccccccCCCCCCCCCCccCCc
Confidence                    1235788877887

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.20  E-value=1.3e-06  Score=79.47  Aligned_cols=59  Identities=24%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHH---HH--HH--HHH----HHHHHHHHHHhhhhccchhhh
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVG---QT--GN--FIC----KAGVFVTVAGIILFRKNEDFQ  215 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~---Ql--g~--~~g----~~Ll~vtVagvil~rkneDl~  215 (247)
                      +++|+.|||+||+|++..++.|++|+.|++.   +.  +.  ++.    ...+.+.++|++.++|..|+.
T Consensus        92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~  161 (250)
T PLN00101         92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK  161 (250)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhccc
Confidence            4899999999999999999999999998763   22  11  211    112335678999999877643

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.08  E-value=3.6e-06  Score=77.02  Aligned_cols=73  Identities=19%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchH-------------------HHHHH--------HHHHHHHHHHHHHhhhh
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV-------------------GQTGN--------FICKAGVFVTVAGIILF  208 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil-------------------~Qlg~--------~~g~~Ll~vtVagvil~  208 (247)
                      .+++|++|||+||+|++..++.|++++.|+.                   +.++.        ++....+.+.++|++..
T Consensus        91 ~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~  170 (262)
T PLN00025         91 NRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG  170 (262)
T ss_pred             HHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999876552                   11110        11122334556899998


Q ss_pred             ccchhh---hhhhhccccccccch
Q 035926          209 RKNEDF---QNLKNLADEATLYDK  229 (247)
Q Consensus       209 rkneDl---~~lk~L~~e~t~yDk  229 (247)
                      ++..+.   +....+||+.. ||+
T Consensus       171 ~r~~~~~~~~~~d~~yPG~~-FDP  193 (262)
T PLN00025        171 YRVNGGPLGEGLDPLYPGGS-FDP  193 (262)
T ss_pred             hcccCCcccccccCcCCccc-CCc
Confidence            876652   12245899886 887

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.07  E-value=4.2e-06  Score=76.02  Aligned_cols=58  Identities=21%  Similarity=0.171  Sum_probs=41.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHH---HH--HH---H----HHHHHHHHHHHHhhhhccchhh
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVG---QT--GN---F----ICKAGVFVTVAGIILFRKNEDF  214 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~---Ql--g~---~----~g~~Ll~vtVagvil~rkneDl  214 (247)
                      +++|+.|||+||+|++..++.|++++.++..   ++  +.   +    ...+.+.+.++|++.+++..|+
T Consensus        83 r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~  152 (244)
T PLN00097         83 VQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDM  152 (244)
T ss_pred             HHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHHHHhhcc
Confidence            4899999999999999999999999877631   11  10   1    1122344456888888886654

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.05  E-value=5e-06  Score=75.72  Aligned_cols=74  Identities=23%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH---H--HH-------HHHHHHHHHHHHHHhhhhccchhhh--------
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG---Q--TG-------NFICKAGVFVTVAGIILFRKNEDFQ--------  215 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~---Q--lg-------~~~g~~Ll~vtVagvil~rkneDl~--------  215 (247)
                      .+++|+.|||+||+|+++.++.|+++..++..   +  .+       ......++.+.++|++..++..++.        
T Consensus        83 ~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~  162 (252)
T PLN00147         83 YVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKE  162 (252)
T ss_pred             HHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccc
Confidence            35899999999999999999999998766421   1  11       0111123345678898887644331        


Q ss_pred             -----------hhhhccccccccch
Q 035926          216 -----------NLKNLADEATLYDK  229 (247)
Q Consensus       216 -----------~lk~L~~e~t~yDk  229 (247)
                                 .++.-|++..+|||
T Consensus       163 g~~~g~~~~~~~~~~~yPGd~~FDP  187 (252)
T PLN00147        163 GSFFGLEAALEGLEPGYPGGPLFNP  187 (252)
T ss_pred             cccccccccccccCCCCcccccCCc
Confidence                       22344788877886

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.95  E-value=8.3e-06  Score=74.31  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=34.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+..|+.|||+||+||++.++.|++||+|.++++...+.
T Consensus       200 ~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hla  238 (252)
T PLN00147        200 WKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS  238 (252)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            357899999999999999999999999999999976544

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.90  E-value=8e-06  Score=74.36  Aligned_cols=36  Identities=28%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGN  191 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~  191 (247)
                      .+..|+.|||+||++|++.++.+.+||+|.++++..
T Consensus       160 ~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~  195 (246)
T PLN00100        160 MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA  195 (246)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence            568999999999999999999999999999999865

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.87  E-value=1.6e-05  Score=72.05  Aligned_cols=72  Identities=15%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCc-------------chHHHHHH------HHHHHHHHHHHHHhhhhccchhhhhh
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGL-------------DVVGQTGN------FICKAGVFVTVAGIILFRKNEDFQNL  217 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~-------------gil~Qlg~------~~g~~Ll~vtVagvil~rkneDl~~l  217 (247)
                      +++|++|||+||+|+++.++.|+++.-             |....++.      ......+.+.++|++...+....+..
T Consensus        83 r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~~~~  162 (243)
T PLN00099         83 KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE  162 (243)
T ss_pred             HHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            489999999999999999999986531             11111111      01111233556788887654444445


Q ss_pred             hhccccccccch
Q 035926          218 KNLADEATLYDK  229 (247)
Q Consensus       218 k~L~~e~t~yDk  229 (247)
                      ++.|++. .||+
T Consensus       163 ~~~yPGd-~FDP  173 (243)
T PLN00099        163 KKKYPGG-AFDP  173 (243)
T ss_pred             CCcCCCC-cCCc
Confidence            6789998 7887

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.84  E-value=1.4e-05  Score=75.20  Aligned_cols=31  Identities=26%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV  186 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil  186 (247)
                      .+++|++|||+||+|+++.++.|++++.+++
T Consensus       148 ~reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        148 YFNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             HHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            4589999999999999999999998866543

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=97.84  E-value=1.1e-05  Score=66.13  Aligned_cols=25  Identities=36%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHH
Q 035926          154 SYLPQAELLNGRAAMVGFFMGYIVD  178 (247)
Q Consensus       154 gf~~~AEl~NGRlAMIGfv~al~~E  178 (247)
                      .+++.+|++|||+|||||++.+++|
T Consensus       131 ~~~~~~El~NGRlAMla~~g~~~~e  155 (156)
T PF00504_consen  131 EFMQLAELKNGRLAMLAFAGFVAQE  155 (156)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999887

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.78  E-value=1.5e-05  Score=70.61  Aligned_cols=32  Identities=34%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG  187 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~  187 (247)
                      .+.+|+.|||+||||+++.++.|.+||++++.
T Consensus       177 ~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        177 KKDKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            44689999999999999999999999999864

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=97.78  E-value=1.2e-05  Score=73.26  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=35.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      ..+..|+.|||+||++|++.++++++||+|.++++...+.
T Consensus       199 ~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hla  238 (250)
T PLN00101        199 EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS  238 (250)
T ss_pred             HHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhc
Confidence            3467899999999999999999999999999999976443

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.76  E-value=2.3e-05  Score=71.09  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHH-HHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVD-ALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E-~~TG~gil~Qlg~~~g  194 (247)
                      .+..|+.|||+|||||++.++.+ .+||+|.++++...+.
T Consensus       186 ~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla  225 (243)
T PLN00099        186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA  225 (243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence            45789999999999999999998 5799999999876443

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.73  E-value=2.5e-05  Score=71.60  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=34.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+..|+.|||+||++|+..++.+++||+|.++++...+.
T Consensus       206 ~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla  244 (262)
T PLN00025        206 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  244 (262)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence            457899999999999999999999999999999876444

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.67  E-value=3.5e-05  Score=70.62  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=34.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI  193 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~  193 (247)
                      .+..|+.|||+||++++..++.+++||+|.++++...+
T Consensus       210 ~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hl  247 (262)
T PLN00048        210 LKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHL  247 (262)
T ss_pred             HHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHh
Confidence            45789999999999999999999999999999986543

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.66  E-value=4.3e-05  Score=70.26  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+..|+.|||+||++++..++.+.+||+|.++++...+.
T Consensus       215 ~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hla  253 (267)
T PLN00098        215 LRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLA  253 (267)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhc
Confidence            357899999999999999999999999999999865443

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.62  E-value=5e-05  Score=69.11  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI  193 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~  193 (247)
                      .+.+|+.|||+||++|+..++.+.+||+|.++++...+
T Consensus       197 lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hl  234 (244)
T PLN00097        197 LKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHL  234 (244)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHh
Confidence            45799999999999999999999999999999986543

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.59  E-value=6.1e-05  Score=71.08  Aligned_cols=38  Identities=34%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      +..|+.|||+||+|+++.++.+.+||+|.++++...+.
T Consensus       274 k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hla  311 (324)
T PLN00171        274 KVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLS  311 (324)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhc
Confidence            45799999999999999999999999999999865443

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.56  E-value=6.9e-05  Score=69.59  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+..|+.|||+||+++++.++.+.+||+|.++.+...+.
T Consensus       235 ~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hla  273 (286)
T PLN00187        235 LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS  273 (286)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            457899999999999999999999999999999876443

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=97.42  E-value=0.00011  Score=64.81  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=25.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCc
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGL  183 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~  183 (247)
                      +..|+.|||+||||+++.++.|.++|.
T Consensus       169 ~~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        169 RAIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            468999999999999999999999995

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.20  E-value=0.0005  Score=62.85  Aligned_cols=59  Identities=22%  Similarity=0.142  Sum_probs=38.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcchHHHH-----HHHHHHHHHHHHHHHhhhhccchhhh
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLDVVGQT-----GNFICKAGVFVTVAGIILFRKNEDFQ  215 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Ql-----g~~~g~~Ll~vtVagvil~rkneDl~  215 (247)
                      +++|++|||+||+|+++.++.|+++.-+..+.-     ........+-+.++|++...+..++.
T Consensus        74 r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~  137 (246)
T PLN00100         74 QEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFM  137 (246)
T ss_pred             HHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHHHHHHHhhhcccccc
Confidence            489999999999999999999986422211100     01111122334468999988776653

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=96.79  E-value=0.0018  Score=57.57  Aligned_cols=28  Identities=29%  Similarity=0.173  Sum_probs=24.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhCcc
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDALTGLD  184 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~~TG~g  184 (247)
                      +++|+.|||+||++++..++.|.++.-|
T Consensus        76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG  103 (209)
T PLN00089         76 RESELKHGRAAMLAVAGFIAPDFVRIPG  103 (209)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999877544

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=96.44  E-value=0.0015  Score=60.02  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTG  190 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg  190 (247)
                      .+.+|+.|||+||++|+..+++- .||+|-++.++
T Consensus       221 lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~  254 (255)
T PLN00170        221 LKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG  254 (255)
T ss_pred             HHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence            46899999999999999666655 89999998875

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=94.81  E-value=0.01  Score=52.53  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Q 035926          157 PQAELLNGRAAMVGFFMGYIVDA  179 (247)
Q Consensus       157 ~~AEl~NGRlAMIGfv~al~~E~  179 (247)
                      +++|+.|||+||++++..++.|.
T Consensus        65 r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         65 RYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHhhcccHHHHhhccceeecc
Confidence            47999999999999999999995

>PLN02449 ferrochelatase

Probab=92.49  E-value=0.082  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHhCcchHHH
Q 035926          166 AAMVGFFMGYIVDALTGLDVVGQ  188 (247)
Q Consensus       166 lAMIGfv~al~~E~~TG~gil~Q  188 (247)
                      +||+||++.++.|++||+|.+++
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        463 AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hHHHHHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.52
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.29
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.2
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.03
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.91
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.85
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.83
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.8
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	97.6
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.58
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.4
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.36

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.52  E-value=1.3e-07  Score=84.35  Aligned_cols=74  Identities=28%  Similarity=0.399  Sum_probs=55.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH---H--------HH-----HHHHHHHHHHHHHHhhhhccchhhhhhhh
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG---Q--------TG-----NFICKAGVFVTVAGIILFRKNEDFQNLKN  219 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~---Q--------lg-----~~~g~~Ll~vtVagvil~rkneDl~~lk~  219 (247)
                      .+++|++|||+||+|+++.++.|+++|....+   +        ++     .+.....+-+.++|++.++|..+++..+.
T Consensus        92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~  171 (243)
T 3pl9_A           92 FRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKR  171 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTT
T ss_pred             HHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            45899999999999999999999998742211   0        00     01122334467899999999999888888


Q ss_pred             ccccccccchh
Q 035926          220 LADEATLYDKQ  230 (247)
Q Consensus       220 L~~e~t~yDkq  230 (247)
                      ++++.- |||-
T Consensus       172 ~~PG~~-FDPL  181 (243)
T 3pl9_A          172 LYPGGT-FDPL  181 (243)
T ss_dssp             TCCCGG-GCTT
T ss_pred             cCCCcc-hhhc
Confidence            999875 8874

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.29  E-value=5.5e-07  Score=79.14  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI  193 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~  193 (247)
                      .+.+|+.|||+||+||++.++.|.+||+|+++|+...+
T Consensus       176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~  213 (232)
T 2bhw_A          176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  213 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            45799999999999999999999999999999987544

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.20  E-value=1.2e-06  Score=78.20  Aligned_cols=39  Identities=31%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+.+|+.|||+||+||++.++.|++||+|.++|+...+.
T Consensus       193 ~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla  231 (243)
T 3pl9_A          193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS  231 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            357999999999999999999999999999999976443

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.03  E-value=1.4e-07  Score=84.02  Aligned_cols=33  Identities=33%  Similarity=0.550  Sum_probs=30.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVG  187 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~  187 (247)
                      +.+++|++|||+||+||++.++.|++|+.|++.
T Consensus        90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~  122 (251)
T 2wsc_4           90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN  122 (251)
T ss_dssp             TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence            467999999999999999999999999988774

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.91  E-value=1.1e-06  Score=79.49  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI  193 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~  193 (247)
                      ..+.+|+.|||+|||||++.++.|++||+|+++++...+
T Consensus       223 ~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hl  261 (276)
T 2wsc_3          223 DLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHL  261 (276)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-----
T ss_pred             HHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhc
Confidence            356899999999999999999999999999999986543

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.85  E-value=1.1e-06  Score=79.15  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTG  190 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg  190 (247)
                      ..+.+|+.|||+|||||++.++.|.+||+|+++++.
T Consensus       216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            467899999999999999999999999999998876

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.83  E-value=1.2e-07  Score=85.63  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV  186 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil  186 (247)
                      .+++|++|||+||+|+++.++.|++++.|++
T Consensus        99 ~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             HHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            5689999999999999999999999988876

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.80  E-value=3.5e-06  Score=75.90  Aligned_cols=31  Identities=39%  Similarity=0.399  Sum_probs=28.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV  186 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil  186 (247)
                      .+++|++|||+||+|+++.++.|++++.|++
T Consensus       102 ~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2          102 NVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             THHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            5689999999999999999999999987765

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=97.60  E-value=3.5e-05  Score=67.72  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTG  182 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG  182 (247)
                      .+++|++|||+||+|++..++.|+++.
T Consensus        61 ~ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A           61 NRELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccchHHHhhhhhhhHHHhcc
Confidence            358999999999999999999998764

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.58  E-value=5.8e-06  Score=73.38  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHH-HHhCcchHHHHHH
Q 035926          155 YLPQAELLNGRAAMVGFFMGYIVD-ALTGLDVVGQTGN  191 (247)
Q Consensus       155 f~~~AEl~NGRlAMIGfv~al~~E-~~TG~gil~Qlg~  191 (247)
                      ..+.+|+.|||+||+||++.++.| .+||+|.++++..
T Consensus       186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~  223 (241)
T 2wsc_1          186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT  223 (241)
T ss_dssp             CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred             HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence            457899999999999999999999 5899999998864

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.40  E-value=7.5e-06  Score=72.69  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH-------------HH------HHHHHHHHHHHHHHHhhhhccchhhhh
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG-------------QT------GNFICKAGVFVTVAGIILFRKNEDFQN  216 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~-------------Ql------g~~~g~~Ll~vtVagvil~rkneDl~~  216 (247)
                      .+++|+.|||+||+|++..++.|+++..+..+             .+      +.+.....+.+.++|++...+..+.+.
T Consensus        83 ~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~~~  162 (241)
T 2wsc_1           83 YKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDP  162 (241)
T ss_dssp             SHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCCSS
T ss_pred             HHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            45899999999999999999999754311110             00      001111122344578887776655556


Q ss_pred             hhhccccccccchh
Q 035926          217 LKNLADEATLYDKQ  230 (247)
Q Consensus       217 lk~L~~e~t~yDkq  230 (247)
                      .+..|+++ +||+-
T Consensus       163 ~~~~yPgg-~fDPl  175 (241)
T 2wsc_1          163 EKKKYPGG-AFDPL  175 (241)
T ss_dssp             CCSSSCSC-CSCSS
T ss_pred             CCCCCCCC-ccccc
Confidence            66788887 78984

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.36  E-value=2.2e-05  Score=69.88  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Q 035926          154 SYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGN  191 (247)
Q Consensus       154 gf~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~  191 (247)
                      ...+..|+.|||+ ||||++.++.|.+||++.++++..
T Consensus       198 ~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~  234 (251)
T 2wsc_4          198 LEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ  234 (251)
T ss_dssp             SSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred             HHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence            3467899999999 999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.46
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	97.6

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.46  E-value=6.5e-08  Score=81.03  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=34.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC  194 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g  194 (247)
                      .+.+|+.|||+||||++..++.|++||++.++++...+.
T Consensus       163 ~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~  201 (218)
T d1rwta_         163 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  201 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhc
Confidence            456899999999999999999999999999999976543

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.60  E-value=2.6e-05  Score=64.88  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhC
Q 035926          156 LPQAELLNGRAAMVGFFMGYIVDALTG  182 (247)
Q Consensus       156 ~~~AEl~NGRlAMIGfv~al~~E~~TG  182 (247)
                      .+++|+.|||+||++++..++.|+++.
T Consensus        48 ~ReaELKHGR~AMLA~vG~~~~E~~~~   74 (218)
T d1rwta_          48 NRELEVIHCRWAMLGALGCVFPELLAR   74 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhceehHhhhcceeehhhhcc
Confidence            359999999999999999999998753