Citrus Sinensis ID: 035942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50---
Protein Sequence
CLFHSSHTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT
Secondary Structure (PSIPRED)
ccEEEEEcccEEEEEEEEEEEccccccHHHHHHHHHHHHEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
clfhsshthtyKLCFMIILVTHartggqreSLKCIYNLYVesidknplyspgt
Flexible Loop (DISEMBL)
clfhsshthtYKLCFMIILVTHARTGGQRESLKCIYNLyvesidknplyspgt
Low Complexity Region (SEG)
CLFHSSHTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT
Disordered region (IsUnstruct)
******HTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESID*********
Disordered Region (DISOPRED)
**FHSSHTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLY****
Disordered Region (DISEMBL)
********HTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT
Disordered Region (DISPRO)
CLFHSSHTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CLFHSSHTHTYKLCFMIILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	53
255545140	169	protein with unknown function [Ricinus c	1.0	0.313	0.666	5e-12
225455334	169	PREDICTED: trafficking protein particle	0.981	0.307	0.677	5e-12
358249032	170	uncharacterized protein LOC100819825 [Gl	1.0	0.311	0.65	8e-12
225464644	169	PREDICTED: trafficking protein particle	1.0	0.313	0.666	1e-11
217071594	169	unknown [Medicago truncatula] gi|3884931	1.0	0.313	0.633	2e-11
357520281	171	Trafficking protein particle complex sub	1.0	0.309	0.633	3e-11
359807026	170	uncharacterized protein LOC100814071 [Gl	1.0	0.311	0.65	4e-11
226493011	178	trafficking protein particle complex sub	1.0	0.297	0.616	4e-11
242033451	178	hypothetical protein SORBIDRAFT_01g01269	1.0	0.297	0.616	4e-11
15223752	169	SNARE-like protein [Arabidopsis thaliana	1.0	0.313	0.616	8e-11

>gi|255545140|ref|XP_002513631.1| protein with unknown function [Ricinus communis] gi|223547539|gb|EEF49034.1| protein with unknown function [Ricinus communis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH RTG  RESLK IYNLYVE + KNPLY+PGT
Sbjct: 91  CSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGT 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455334|ref|XP_002276578.1| PREDICTED: trafficking protein particle complex subunit 1 isoform 1 [Vitis vinifera] gi|359490712|ref|XP_003634147.1| PREDICTED: trafficking protein particle complex subunit 1 isoform 2 [Vitis vinifera] gi|302143925|emb|CBI23030.3| unnamed protein product [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 42/59 (71%), Gaps = 7/59 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPG 52
           C FHS  T+TYKL FM       IILVTH RTG  RESLK IYNLYVE + KNPLYSPG
Sbjct: 91  CSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYSPG 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249032|ref|NP_001240237.1| uncharacterized protein LOC100819825 [Glycine max] gi|255647710|gb|ACU24316.1| unknown [Glycine max]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH RTG  RESLK IYNLYVE + KNPLY+PG+
Sbjct: 92  CSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGS 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464644|ref|XP_002276513.1| PREDICTED: trafficking protein particle complex subunit 1 isoform 1 [Vitis vinifera] gi|359490457|ref|XP_003634094.1| PREDICTED: trafficking protein particle complex subunit 1 isoform 2 [Vitis vinifera] gi|147834231|emb|CAN66358.1| hypothetical protein VITISV_016122 [Vitis vinifera] gi|302143758|emb|CBI22619.3| unnamed protein product [Vitis vinifera]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 42/60 (70%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH  TG  RESLK IYNLYVE + KNPLYSPGT
Sbjct: 91  CSFHSFRTNTYKLSFMESPSGIKIILVTHPGTGDLRESLKYIYNLYVEYVVKNPLYSPGT 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071594|gb|ACJ84157.1| unknown [Medicago truncatula] gi|388493118|gb|AFK34625.1| unknown [Medicago truncatula] gi|388514053|gb|AFK45088.1| unknown [Medicago truncatula]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH RTG  R+SLK IYNLYVE + KNPLY+PG+
Sbjct: 91  CSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYTPGS 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520281|ref|XP_003630429.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|355524451|gb|AET04905.1| Trafficking protein particle complex subunit [Medicago truncatula]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FH+  T+TYKL FM       IILVTH RTG  RESLK IYNLYVE + KNPLY+PG+
Sbjct: 93  CSFHTFRTNTYKLTFMETPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGS 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807026|ref|NP_001241592.1| uncharacterized protein LOC100814071 [Glycine max] gi|255647649|gb|ACU24287.1| unknown [Glycine max]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH RTG  RESLK IYNLYVE + KNPLY+PG+
Sbjct: 92  CSFHSFCTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGS 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226493011|ref|NP_001150411.1| trafficking protein particle complex subunit 1 [Zea mays] gi|195639060|gb|ACG38998.1| trafficking protein particle complex subunit 1 [Zea mays] gi|223975615|gb|ACN31995.1| unknown [Zea mays] gi|414872026|tpg|DAA50583.1| TPA: Trafficking protein particle complex subunit 1 isoform 1 [Zea mays] gi|414872027|tpg|DAA50584.1| TPA: Trafficking protein particle complex subunit 1 isoform 2 [Zea mays] gi|414872028|tpg|DAA50585.1| TPA: Trafficking protein particle complex subunit 1 isoform 3 [Zea mays]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C F+S  T+TYKL FM       +IL+TH RTG QR+SLK IYNLYVE + KNPLY+PGT
Sbjct: 100 CSFYSFKTNTYKLNFMESPSGIKLILITHPRTGDQRDSLKHIYNLYVEYVVKNPLYAPGT 159

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033451|ref|XP_002464120.1| hypothetical protein SORBIDRAFT_01g012690 [Sorghum bicolor] gi|241917974|gb|EER91118.1| hypothetical protein SORBIDRAFT_01g012690 [Sorghum bicolor]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C F+S  T+TYKL FM       +IL+TH RTG QR+SLK IYNLYVE + KNPLY+PGT
Sbjct: 100 CSFYSFKTNTYKLNFMESPSGIKLILITHPRTGDQRDSLKHIYNLYVEYVVKNPLYAPGT 159

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223752|ref|NP_175528.1| SNARE-like protein [Arabidopsis thaliana] gi|79319655|ref|NP_001031168.1| SNARE-like protein [Arabidopsis thaliana] gi|297847478|ref|XP_002891620.1| hypothetical protein ARALYDRAFT_892078 [Arabidopsis lyrata subsp. lyrata] gi|4836927|gb|AAD30629.1|AC006085_2 Unknown protein [Arabidopsis thaliana] gi|12320789|gb|AAG50544.1|AC079828_15 unknown protein [Arabidopsis thaliana] gi|28466907|gb|AAO44062.1| At1g51160 [Arabidopsis thaliana] gi|110743933|dbj|BAE99800.1| hypothetical protein [Arabidopsis thaliana] gi|297337462|gb|EFH67879.1| hypothetical protein ARALYDRAFT_892078 [Arabidopsis lyrata subsp. lyrata] gi|332194507|gb|AEE32628.1| SNARE-like protein [Arabidopsis thaliana] gi|332194508|gb|AEE32629.1| SNARE-like protein [Arabidopsis thaliana]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 7/60 (11%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
           C FHS  T+TYKL FM       IILVTH +TG  RESLK IY+LYVE + KNP+YSPG+
Sbjct: 91  CSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPIYSPGS 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	53
TAIR|locus:2008326	169	AT1G51160 "AT1G51160" [Arabido	1.0	0.313	0.616	3.4e-13
DICTYBASE|DDB_G0273579	142	DDB_G0273579 "Trafficking prot	0.962	0.359	0.372	0.00045
DICTYBASE|DDB_G0273467	142	DDB_G0273467 "Trafficking prot	0.962	0.359	0.372	0.00045

TAIR|locus:2008326 AT1G51160 "AT1G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 37/60 (61%), Positives = 43/60 (71%)

Query:     1 CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
             C FHS  T+TYKL FM       IILVTH +TG  RESLK IY+LYVE + KNP+YSPG+
Sbjct:    91 CSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPIYSPGS 150

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0273579 DDB_G0273579 "Trafficking protein particle complex subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query:     3 FHSSHTHTYKL-------CFMIILVTHARTGGQRESLKCIYN-LYVESIDKNPLYSPGT 53
             FH   T TYKL       C   I+++       R+ LK IY+ ++VE + KNP+Y  GT
Sbjct:    61 FHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGT 119

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273467 DDB_G0273467 "Trafficking protein particle complex subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query:     3 FHSSHTHTYKL-------CFMIILVTHARTGGQRESLKCIYN-LYVESIDKNPLYSPGT 53
             FH   T TYKL       C   I+++       R+ LK IY+ ++VE + KNP+Y  GT
Sbjct:    61 FHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGT 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.445    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       53        53   0.00091  102 3  11 22  0.39    27
                                                     29  0.50    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  482 (51 KB)
  Total size of DFA:  86 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.21u 0.34s 6.55t   Elapsed:  00:00:00
  Total cpu time:  6.21u 0.34s 6.55t   Elapsed:  00:00:00
  Start:  Fri May 10 16:10:44 2013   End:  Fri May 10 16:10:44 2013

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037771001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_91, whole genome shotgun sequence); (169 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027363001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotg [...] (186 aa)				•	•		•		0.736
	GSVIVG00022556001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_27, whole genome shot [...] (141 aa)					•		•	•	0.462

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	53
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	9e-09

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 46.9 bits (112), Expect = 9e-09
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 1   CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYN-LYVESIDKNPLYSPG 52
               S  T T+KL  +        +LVT   TG  R+SL   Y  LY + + KNP YS  
Sbjct: 57  SGIESLETDTFKLHCLQTLTGIKFVLVTDPGTGPNRDSLLRKYYELYSDYVLKNPFYSLE 116

Query: 53  T 53
            
Sbjct: 117 M 117

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	53
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	99.85
KOG3368	140	consensus Transport protein particle (TRAPP) compl	99.83
KOG3369	199	consensus Transport protein particle (TRAPP) compl	99.77
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.46
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	98.34
KOG3444	121	consensus Uncharacterized conserved protein [Funct	96.29
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	96.12
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	95.15
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	92.24

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=99.85  E-value=2.6e-21  Score=119.29  Aligned_cols=53  Identities=40%  Similarity=0.590  Sum_probs=41.6

Q ss_pred             CceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHH-HHHhHhhhhcCCCCCCCC
Q 035942            1 CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCI-YNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         1 ~~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~i-Y~~YvdyV~KNPfy~~~~   53 (53)
                      ++|++++|++|||||+       ||++||++++++++.|+++ |++|+|||+|||||++|.
T Consensus        65 ~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~  125 (142)
T PF04099_consen   65 SGFESFETDTYKLHCFETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEM  125 (142)
T ss_dssp             -SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS
T ss_pred             eeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            5799999999999999       9999999997665555554 559999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-20  Score=116.07  Aligned_cols=49  Identities=47%  Similarity=0.756  Sum_probs=48.2

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHH-HhHhhhhcCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYN-LYVESIDKNPLYS   50 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~-~YvdyV~KNPfy~   50 (53)
                      +|++++|++||||++       ||++|||++++++++|++||+ +||+||+|||+++
T Consensus        60 ~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~  116 (140)
T KOG3368|consen   60 GFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYT  116 (140)
T ss_pred             CeeEEeeceeEEEEEEcCCCcEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCcccc
Confidence            689999999999999       999999999999999999999 9999999999999

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-18  Score=113.20  Aligned_cols=51  Identities=29%  Similarity=0.498  Sum_probs=49.2

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHHHhHhhhhcCCCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPG   52 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~~YvdyV~KNPfy~~~   52 (53)
                      |..-++|++|+||||       ||+++|+..+.++.+|++||++|.|||+|||||++|
T Consensus       122 Gie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKNPfYSlE  179 (199)
T KOG3369|consen  122 GIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKNPFYSLE  179 (199)
T ss_pred             ceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCccCcc
Confidence            677899999999999       999999999999999999999999999999999986

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.46  E-value=3.2e-13  Score=83.20  Aligned_cols=51  Identities=27%  Similarity=0.421  Sum_probs=47.6

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHHHhHhhhhcCCCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPG   52 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~~YvdyV~KNPfy~~~   52 (53)
                      +.+.+.+++|.+|.+       ||.++...+.|+.--|++||++|+|||+|||||++|
T Consensus        58 g~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t~na~~ql~kiY~lYsdYV~knPfys~E  115 (134)
T COG5122          58 GRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYSLYSDYVTKNPFYSPE  115 (134)
T ss_pred             ceEEEEeccEEEEEEEecCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence            567788999999999       999999999999988999999999999999999986

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=98.34  E-value=1.8e-06  Score=52.29  Aligned_cols=47  Identities=32%  Similarity=0.496  Sum_probs=38.5

Q ss_pred             EEeCCeEEEEE-------EEEeeC-----CCCccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            6 SHTHTYKLCFM-------IILVTH-----ARTGGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         6 ~~T~~yklh~~-------Fvl~td-----~~~~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      +..+.|+++-|       ||++.+     .+..+++.++++||++|++ ++-||||++++
T Consensus        57 ~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~-~~~NPF~~~~~  115 (132)
T PF04628_consen   57 DPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVK-ALCNPFYQPGT  115 (132)
T ss_dssp             EEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHH-HHTSTTCGCT-
T ss_pred             ehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHH-HccCCCCCCCC
Confidence            45688999988       999888     4566899999999999999 67799999874

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.014  Score=35.86  Aligned_cols=47  Identities=30%  Similarity=0.501  Sum_probs=38.0

Q ss_pred             EEeCCeEEEEE-------EEEeeCCC-----CccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            6 SHTHTYKLCFM-------IILVTHAR-----TGGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         6 ~~T~~yklh~~-------Fvl~td~~-----~~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      +.|..||..-|       ||+.+|..     ...+|.+.|..+-+|.| ++-||||-+|+
T Consensus        63 y~ted~kvYgfvtNTkVKFIlvvdssd~avreteiRsv~r~~h~l~td-~~~npfy~pg~  121 (121)
T KOG3444|consen   63 YPTEDYKVYGFVTNTKVKFILVVDSSDYAVRETEIRSVFRILHLLYTD-LSCNPFYLPGL  121 (121)
T ss_pred             ccccceeEEEEEeccEEEEEEEEcCCcceehhHHHHHHHHHHHHHHHH-heecceeccCC
Confidence            46888999888       99988664     34667888887779999 89999999874

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.017  Score=36.33  Aligned_cols=39  Identities=18%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             EEEEEEeeCCCC-ccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942           14 CFMIILVTHART-GGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus        14 h~~Fvl~td~~~-~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      |..|+++-+.++ .++....+.+|++|+.. +.||||++.+
T Consensus        79 ~i~f~mlh~~~~~~~ik~Ffqev~elyik~-lmnpFy~~~d  118 (139)
T KOG3487|consen   79 HIRFIMLHINRADDNIKLFFQEVHELYIKT-LMNPFYEIND  118 (139)
T ss_pred             cEEEEEEeeccccccHHHHHHHHHHHHHHH-HhCcccccCC
Confidence            334888877765 48999999999999994 6799999864

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=95.15  E-value=0.048  Score=34.04  Aligned_cols=36  Identities=19%  Similarity=0.479  Sum_probs=29.8

Q ss_pred             EEEeeCCC-CccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942           17 IILVTHAR-TGGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus        17 Fvl~td~~-~~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      |+++-..+ ..|++..++.++++|++. +.||||++++
T Consensus        81 f~~iH~n~s~~N~rsF~qevHely~kt-Lmspfy~~~~  117 (136)
T COG5603          81 FLFIHQNQSRKNARSFLQEVHELYAKT-LMSPFYEPDE  117 (136)
T ss_pred             EEEEeccchhhhHHHHHHHHHHHHHHH-hhCcccCCCc
Confidence            77777554 569999999999999995 5699999874

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=92.24  E-value=1.1  Score=24.49  Aligned_cols=38  Identities=13%  Similarity=0.193  Sum_probs=29.2

Q ss_pred             eEEEeCCeEEEEE------EEEeeCCCCcc--HHHHHHHHHHHhHh
Q 035942            4 HSSHTHTYKLCFM------IILVTHARTGG--QRESLKCIYNLYVE   41 (53)
Q Consensus         4 ~s~~T~~yklh~~------Fvl~td~~~~~--~~~~L~~iY~~Yvd   41 (53)
                      .+++.+.|..|++      ++++||.+.+.  .=..|++|.+.|..
T Consensus        17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~   62 (83)
T PF13774_consen   17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ   62 (83)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence            5788999999999      99999998774  45667777764443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	53
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	9e-08
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	4e-06
3cue_C	159	Transport protein particle 18 kDa subunit; membran	2e-05

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 44.7 bits (105), Expect = 9e-08
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 3   FHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53
                T T+KL           +++   R  G    L+ IY +Y +   KNP YS   
Sbjct: 134 IEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEM 191

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 39.8 bits (93), Expect = 4e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 3   FHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIY-NLYVESIDKNPLYSPG 52
           F S  T  YKL +        +++ T    G  R+ L  IY  LYVE + KNPL   G
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLG 118

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 3   FHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIY-NLYVESIDKNPLYS 50
             S  T  Y++           +L++  +     + L+ IY ++YV+ +  N L  
Sbjct: 67  IRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSP 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	53
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.83
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.79
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.76
3cue_A	219	Transport protein particle 23 kDa subunit; membran	99.76
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.59
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	97.66

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.83  E-value=6.6e-21  Score=116.81  Aligned_cols=52  Identities=40%  Similarity=0.595  Sum_probs=49.8

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHH-HHhHhhhhcCCCCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIY-NLYVESIDKNPLYSPGT   53 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY-~~YvdyV~KNPfy~~~~   53 (53)
                      +|++++|++||+|||       ||++||++.++++++|++|| ++|+|||||||||++|+
T Consensus        60 ~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~  119 (145)
T 2j3t_C           60 GFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQ  119 (145)
T ss_dssp             CEEEEECSSCEEEEEECTTSCEEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTS
T ss_pred             ceEEEecCCEEEEEEEcCCCCEEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            689999999999999       99999999999999999999 59999999999999874

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.7e-19  Score=111.30  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             CceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHH-HhHhhhhcCC-----CCCCC
Q 035942            1 CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYN-LYVESIDKNP-----LYSPG   52 (53)
Q Consensus         1 ~~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~-~YvdyV~KNP-----fy~~~   52 (53)
                      ++|++++|++||+|+|       ||++||++.++++++|++||+ +|+|||+|||     ||++|
T Consensus        65 ~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~  129 (159)
T 3cue_C           65 NDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE  129 (159)
T ss_dssp             CCEEEEECSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred             CCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence            4799999999999999       999999999999999999998 9999999999     88776

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.76  E-value=1.2e-18  Score=113.75  Aligned_cols=52  Identities=29%  Similarity=0.451  Sum_probs=50.2

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      +|++++|++||+|||       ||++||++.++++++|++||++|+|||||||||++|+
T Consensus       133 g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~  191 (219)
T 2j3t_D          133 GIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEM  191 (219)
T ss_dssp             SCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTS
T ss_pred             CeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence            688999999999999       9999999999999999999999999999999999874

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.5e-18  Score=113.51  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=49.6

Q ss_pred             ceeEEEeCCeEEEEE-------EEEeeCCCC------------------------ccHHHHHHHHHHHhHhhhhcCCCCC
Q 035942            2 LFHSSHTHTYKLCFM-------IILVTHART------------------------GGQRESLKCIYNLYVESIDKNPLYS   50 (53)
Q Consensus         2 ~f~s~~T~~yklh~~-------Fvl~td~~~------------------------~~~~~~L~~iY~~YvdyV~KNPfy~   50 (53)
                      +|++++|++|++|||       |||++|+..                        ++++++|++||++|||||||||||+
T Consensus       118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~  197 (219)
T 3cue_A          118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS  197 (219)
T ss_dssp             SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred             ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            689999999999999       999999998                        7899999999999999999999999


Q ss_pred             CCC
Q 035942           51 PGT   53 (53)
Q Consensus        51 ~~~   53 (53)
                      +|+
T Consensus       198 ~~~  200 (219)
T 3cue_A          198 MEM  200 (219)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            874

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.59  E-value=3.9e-15  Score=90.48  Aligned_cols=50  Identities=18%  Similarity=0.445  Sum_probs=45.6

Q ss_pred             eeEEEeCCeEEEEE-------EEEeeCC-CCccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            3 FHSSHTHTYKLCFM-------IILVTHA-RTGGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         3 f~s~~T~~yklh~~-------Fvl~td~-~~~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      +....++.|++|+|       ||+++|+ +.++++++|++||++|+|+|+ ||||++|+
T Consensus        64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~  121 (142)
T 2j3w_A           64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS  121 (142)
T ss_dssp             EEEEEETTEEEEEEECTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTC
T ss_pred             EeeecccceEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCC
Confidence            35667899999999       9999999 489999999999999999999 99999874

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=97.66  E-value=7.6e-05  Score=46.78  Aligned_cols=47  Identities=15%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             EEeCCeEEEEE--------EEEeeCCC------C--ccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            6 SHTHTYKLCFM--------IILVTHAR------T--GGQRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         6 ~~T~~yklh~~--------Fvl~td~~------~--~~~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      +.++.++...|        ||+..|.+      .  .+++.+.++++++|++ ++-||||.+++
T Consensus        72 ~~~e~~~VYGy~iTnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d  134 (162)
T 3pr6_A           72 FQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD  134 (162)
T ss_dssp             EEETTEEEEEEECTTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred             eecCCeEEEEEEEcCCceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence            45678888877        88877653      1  5788899999999999 77899999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	53
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.42

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.2e-13  Score=81.70  Aligned_cols=47  Identities=19%  Similarity=0.477  Sum_probs=42.4

Q ss_pred             EEeCCeEEEEE-------EEEeeCCCCcc-HHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942            6 SHTHTYKLCFM-------IILVTHARTGG-QRESLKCIYNLYVESIDKNPLYSPGT   53 (53)
Q Consensus         6 ~~T~~yklh~~-------Fvl~td~~~~~-~~~~L~~iY~~YvdyV~KNPfy~~~~   53 (53)
                      .++++|++|+|       ||++||+..++ ++.+++++|++|+++|+ ||||++|+
T Consensus        65 ~~~~~~~v~~y~T~tg~Kfvl~td~~~~~~i~~~~~~v~~lYv~~v~-NPfy~~~~  119 (140)
T d2j3wa1          65 DKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS  119 (140)
T ss_dssp             EEETTEEEEEEECTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTC
T ss_pred             EecCCEEEEEEEcCCCcEEEEEeCCCcchHHHHHHHHHHHHHHHHhh-CccCCCCC
Confidence            46899999999       99999997765 78999999999999999 99999875