Citrus Sinensis ID: 036017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL
Secondary Structure (PSIPRED)
cccccEEEEEccccccccccccEEEcccccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccccccccEEccccccccccHHcEEEEccccccccccccccHHHHEEEEcccccHHHccccccccccccEEEcccccccccccccccccccHEEEccccccHcccccHHHHHHHccEEEcccccccccccHHHcccHHHccEEEcccccHHHcccHHHccHHHccEEEccccccHHccccHHccHHHccEEEcccccccccccHHHHHHcccEEEcccccHHccccccccccccccEEEccccccEEccccHHHHHHccEEEccccccc
Coil and Loop (DISEMBL)
MTNLRLLKFYLHnlrgdpimsskvhldqgldylpeELRYLhwhgyplrtlptnlstdklvvlnlpcsnVELLWEEKKEAFKLKSVdlcnsqnltrmpdlsetpnlermyllnctnlpfiSSSIENLNNLSMLRLegckilgpfpafislsltnlevldlaHCKRLNRLSASICklkslswlrlyncsklesfpGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLsklpdnlgslrslkrlhtgksaisqlpssiadlkqvdglsfygcrgl
Flexible Loop (DISEMBL)
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKlksvdlcnsqnltrmpdlsetpnLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLsasicklkslswlRLYNCSKLESFPGILENMARLEYIDLRLTAIKelpssvehLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAisqlpssiadlkqvdglsfygcrgl
Low Complexity Region (SEG)
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFisssienlnnlsMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL
Disordered region (IsUnstruct)
***LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLT********PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSL*********************DLKQVDGLSFYGC***
Disordered Region (DISOPRED)
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL
Disordered Region (DISEMBL)
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL
Disordered Region (DISPRO)
*TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.957	0.143	0.358	3e-31
Q40392	1144	TMV resistance protein N	N/A	no	0.890	0.220	0.290	5e-23
O82500	1095	Putative disease resistan	no	no	0.706	0.182	0.344	9e-21
Q9FL92	1372	Probable WRKY transcripti	no	no	0.876	0.180	0.313	2e-18
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.897	0.195	0.301	1e-17
Q9FH83	1288	Probable WRKY transcripti	no	no	0.950	0.208	0.321	5e-17
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.925	0.162	0.303	1e-16
Q9FKZ1	809	Probable disease resistan	no	no	0.607	0.212	0.313	4e-13
Q9SZA7	816	Probable disease resistan	no	no	0.551	0.191	0.352	1e-12
Q9FKZ0	815	Probable disease resistan	no	no	0.883	0.306	0.276	7e-12

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 19/290 (6%)

Query: 1    MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
            M NLRLLK Y             V   QGL+YLP +LR LHW  YPL +LP + + + LV
Sbjct: 1175 MCNLRLLKLYCSKAE----EKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLV 1230

Query: 61   VLNLPCSNVELLWEEKKEAF--------KLKSVDLCNSQNLTRMPDLSETPNLERMYLLN 112
             LNLP S  + LW+ KK  F        KLK + L  S  LT++P LS   NLE + L  
Sbjct: 1231 ELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEG 1290

Query: 113  CTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI 172
            C +L  +S SI  L  L  L L+GC  L   P+ + L   +LEVL+L+ C +L       
Sbjct: 1291 CNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLE--SLEVLNLSGCSKLGNFPEIS 1348

Query: 173  CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRME 231
              +K L        + ++  P  ++N+  LE +DL  +  +K LP+S+  L+ L+ L + 
Sbjct: 1349 PNVKEL----YMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLS 1404

Query: 232  YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
             C  L + PD+   ++ L+ L   ++ I +LPSSI+ L  +D L F   R
Sbjct: 1405 GCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLFVDSR 1454

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 134/330 (40%), Gaps = 78/330 (23%)

Query: 29  GLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLC 88
            +DYLP  LR      YP  + P+      LV L L  +++  LW E K    L+ +DL 
Sbjct: 568 AIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLS 627

Query: 89  NSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS 148
            S+ LTR PD +  PNLE + L  C+NL  +  S+   + +  L L  CK L  FP    
Sbjct: 628 WSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC--- 684

Query: 149 LSLTNLEVLDLAHCKRLNR----------------------------------------- 167
           +++ +LE L L  C  L +                                         
Sbjct: 685 VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLW 744

Query: 168 -------LSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV- 219
                  L +SIC+LKSL  L +  CSKLES P  + ++  L   D   T I   PSS+ 
Sbjct: 745 NMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSII 804

Query: 220 -------------------------EHLEGLKELRMEYCYKL-SKLPDNLGSLRSLKRLH 253
                                    E L  L+ L + YC  +   LP+ +GSL SLK+L 
Sbjct: 805 RLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLD 864

Query: 254 TGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
             ++    LPSSIA L  +  L    C+ L
Sbjct: 865 LSRNNFEHLPSSIAQLGALQSLDLKDCQRL 894

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  100 bits (250), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 32/232 (13%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHL-DQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKL 59
           M NL  LKFY+ +   D  M  K+ L ++GL YLP+ LR LHW  YPL   P++   + L
Sbjct: 553 MRNLVYLKFYMSSPIDDK-MKVKLQLPEEGLSYLPQ-LRLLHWDAYPLEFFPSSFRPECL 610

Query: 60  VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFI 119
           V LN+  S ++ LW   +    L++++L +S+NL  +P+L E   L R+ L  C +L  +
Sbjct: 611 VELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVEL 670

Query: 120 SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS 179
            SSI+NL +L +L +  CK L   P   +++L +LEVL   +C R               
Sbjct: 671 PSSIKNLQHLILLEMSCCKKLEIIPT--NINLPSLEVLHFRYCTR--------------- 713

Query: 180 WLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME 231
                    L++FP I  N+  L  I    TAI E+P SV++   + E+ ME
Sbjct: 714 ---------LQTFPEISTNIRLLNLIG---TAITEVPPSVKYWSKIDEICME 753

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 131/284 (46%), Gaps = 36/284 (12%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M NLRL K Y  N     +      L   L  LP  LR LHW  YPL+ LP N     LV
Sbjct: 516 MLNLRLFKIYSSNPE---VHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLV 572

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            +N+P S ++ LW   K+   LK++ LC+SQ L  + DL +  NLE + L  CT L    
Sbjct: 573 EINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFP 632

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
           ++ + L +L ++ L GC  +  FP        N+E L+L     +  L  SI K      
Sbjct: 633 ATGQ-LLHLRVVNLSGCTEIKSFPEIP----PNIETLNLQGTGII-ELPLSIVKPNYREL 686

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLR-LTAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
           L L     L   PG L  ++ LE  DL+ LT++ ++ +S ++   L  L +  C +L  L
Sbjct: 687 LNL-----LAEIPG-LSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSL 740

Query: 240 PDNL--------------------GSLRSLKRLHTGKSAISQLP 263
           P+ +                    G  R+LK L+   +A+ Q+P
Sbjct: 741 PNMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVP 784

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 25/279 (8%)

Query: 26  LDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSV 85
           L Q L YLP +LR L W   PL++LP+    + LV L +  S +E LWE       LK +
Sbjct: 559 LPQSLVYLPLKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEM 618

Query: 86  DLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPA 145
           +L  S NL  +PDLS   NLE + L+ C +L  + SSI+N   L  L +  CK L  FP 
Sbjct: 619 NLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPT 678

Query: 146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW------LRLYNCSKLESFPGILENM 199
              L+L +LE L+L  C  L    A       + +      + + +C   ++ P  L+ +
Sbjct: 679 --DLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYL 736

Query: 200 -------------ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD--NLG 244
                         +L ++++R    ++L   ++ L  L+ + +     L+++PD     
Sbjct: 737 DCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPDLSKAT 796

Query: 245 SLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
            L SL  L+  KS ++ LPS+I +L ++  L    C GL
Sbjct: 797 KLESLI-LNNCKSLVT-LPSTIGNLHRLVRLEMKECTGL 833

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 145/314 (46%), Gaps = 45/314 (14%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M NLRLLK Y  N    P+++        L  LP ELR LHW  YPL++LP N     LV
Sbjct: 523 MLNLRLLKIYCSNPEVHPVINFPTG---SLHSLPNELRLLHWENYPLKSLPQNFDPRHLV 579

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCT---NLP 117
            +N+P S ++ LW   K    L+++ LC+S +L  + DL +  NLE + L  CT   N P
Sbjct: 580 EINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCTRLQNFP 639

Query: 118 F-----------------ISSSIENLNNLSMLRLEGCKILGPFPAFIS---LSLTNL--E 155
                             I S +E   N+  L L+G  IL    + +      L N   E
Sbjct: 640 AAGRLLRLRVVNLSGCIKIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNFLTE 699

Query: 156 VLDLA-HCKRLNRL--SASICK-LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA 211
           +  L+   +RL  L  S S C+ L  L  L L +CS L+S P    NMA L+   L L+ 
Sbjct: 700 IPGLSEELERLTSLLESNSSCQDLGKLICLELKDCSCLQSLP----NMANLDLNVLDLSG 755

Query: 212 IKELPSSVEHLEGLKELRM--EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL 269
              L S       LK+L +      ++ +LP      +SL+ L+   S +  LP ++A+L
Sbjct: 756 CSSLNSIQGFPRFLKQLYLGGTAIREVPQLP------QSLEILNAHGSCLRSLP-NMANL 808

Query: 270 KQVDGLSFYGCRGL 283
           + +  L   GC  L
Sbjct: 809 EFLKVLDLSGCSEL 822

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 136/306 (44%), Gaps = 44/306 (14%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M NL+ LK Y  N     I  S ++  +GLD LP ELR LHW  YPL++LP +     LV
Sbjct: 541 MFNLKFLKIY--NSCSKYI--SGLNFPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLV 596

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L++P S +  L    K+   LK + L +S  L     L    N+E + L  CT L    
Sbjct: 597 KLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDLQGCTGLQRFP 656

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL--AHCKRLNRLSASICKLKSL 178
            +   L NL ++ L GC  +  F         N+E L L     + +   +A+      L
Sbjct: 657 DT-SQLQNLRVVNLSGCTEIKCFSGVPP----NIEELHLQGTRIREIPIFNATHPPKVKL 711

Query: 179 SWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEG-LKELRMEYCYKLS 237
              +L+N         +LEN + +E+IDL         +S  H+ G L  L M+YC  L 
Sbjct: 712 DRKKLWN---------LLENFSDVEHIDLECVTNLATVTSNNHVMGKLVCLNMKYCSNLR 762

Query: 238 KLPDN--------------------LGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSF 277
            LPD                     +G  R+LK+L+ G +AI +LP     L   + L+ 
Sbjct: 763 GLPDMVSLESLKVLYLSGCSELEKIMGFPRNLKKLYVGGTAIRELPQLPNSL---EFLNA 819

Query: 278 YGCRGL 283
           +GC+ L
Sbjct: 820 HGCKHL 825

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 10/182 (5%)

Query: 99  LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPF----PAFISLSLTNL 154
           LS  PNL+R+ L   + +  +      L++L  L L  C     F       +S +L+ L
Sbjct: 593 LSSLPNLKRIRLEKVS-ITLLDIPQLQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALSKL 651

Query: 155 EVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA--- 211
           + +D+ +C  L+ L   I ++ SL  L + NC+KL   P  + N++RLE   LRL +   
Sbjct: 652 QEIDIDYCYDLDELPYWISEIVSLKTLSITNCNKLSQLPEAIGNLSRLEV--LRLCSSMN 709

Query: 212 IKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQ 271
           + ELP + E L  L+ L + +C  L KLP  +G L++LK++   K +  +LP S+ +L+ 
Sbjct: 710 LSELPEATEGLSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRKCSGCELPESVTNLEN 769

Query: 272 VD 273
           ++
Sbjct: 770 LE 771

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 83/176 (47%), Gaps = 20/176 (11%)

Query: 107 RMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL------- 159
           R   L   ++P +S+S   L NL  + L  CKI   F        T L+V D+       
Sbjct: 608 RSLWLERVHVPQLSNSTTPLKNLHKMSLILCKINKSFDQ------TGLDVADIFPKLGDL 661

Query: 160 --AHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA---IKE 214
              HC  L  L +SIC L SLS L + NC +L   P  L  +  LE   LRL A   +K 
Sbjct: 662 TIDHCDDLVALPSSICGLTSLSCLSITNCPRLGELPKNLSKLQALEI--LRLYACPELKT 719

Query: 215 LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLK 270
           LP  +  L GLK L +  C  LS LP+ +G L+ L+++   +   S  PSS   LK
Sbjct: 720 LPGEICELPGLKYLDISQCVSLSCLPEEIGKLKKLEKIDMRECCFSDRPSSAVSLK 775

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 32/282 (11%)

Query: 17  DPIMS-SKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVV---LNLPCSNVELL 72
           +PIM   K++L+   D  P+E         P+     ++ TD L     L + C NVE L
Sbjct: 503 EPIMQRKKLNLEIREDNFPDECL-----NQPINARLLSIYTDDLFSSKWLEMDCPNVEAL 557

Query: 73  W-----------EEKKEAFKLKSVDLCNS----QNLTRMPDLSETPNLERMYL--LNCTN 115
                           E  KLK + + N       L+    LS  PNL+R+    ++ T 
Sbjct: 558 VLNISSLDYALPSFIAEMKKLKVLTIANHGFYPARLSNFSCLSSLPNLKRIRFEKVSVTL 617

Query: 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRLNRLSASICK 174
           L      + +L  LS       ++        +S +L+NL+ +D+ +C  L+ L   I +
Sbjct: 618 LDIPQLQLGSLKKLSFFMCSFGEVFYDTEDIDVSKALSNLQEIDIDYCYDLDELPYWIPE 677

Query: 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA---IKELPSSVEHLEGLKELRME 231
           + SL  L + NC+KL   P  + N++RLE   LR+ +   + ELP + E L  L+ L + 
Sbjct: 678 VVSLKTLSITNCNKLSQLPEAIGNLSRLEV--LRMCSCMNLSELPEATERLSNLRSLDIS 735

Query: 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVD 273
           +C  L KLP  +G L+ L+ +   K +  +LP S+  L+ ++
Sbjct: 736 HCLGLRKLPQEIGKLQKLENISMRKCSGCELPDSVRYLENLE 777

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
296081002	599	unnamed protein product [Vitis vinifera]	0.961	0.454	0.426	3e-45
255537139	1137	leucine-rich repeat-containing protein,	0.897	0.223	0.412	1e-43
359495221	1181	PREDICTED: TMV resistance protein N-like	0.982	0.235	0.356	2e-42
147822714	1254	hypothetical protein VITISV_015601 [Viti	0.982	0.221	0.356	2e-42
37781356	1136	nematode resistance-like protein [Solanu	0.946	0.235	0.404	4e-42
359486071	1261	PREDICTED: TMV resistance protein N-like	0.996	0.223	0.341	4e-42
359486073	1296	PREDICTED: TMV resistance protein N-like	0.996	0.217	0.344	1e-41
359493273	1233	PREDICTED: TMV resistance protein N-like	0.904	0.207	0.387	2e-41
37781280	1136	nematode resistance-like protein [Solanu	0.946	0.235	0.401	4e-41
297740941	1426	unnamed protein product [Vitis vinifera]	0.978	0.194	0.34	7e-41

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/286 (42%), Positives = 166/286 (58%), Gaps = 14/286 (4%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M  LRLLK +  N  G      K  L    ++   ELRYL+WHGYP  +LP+   ++ L+
Sbjct: 1   MNRLRLLKVF--NFSGIGKEGYKEPLSVSFEFPSYELRYLYWHGYPFGSLPSKFHSENLI 58

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            LN+  S +  LW+  +    L +++L NSQ+L  +P+ S  PNLER+ L  CT+   + 
Sbjct: 59  ELNMCYSYMRELWKGNEVLDNLNTIELSNSQHLIHLPNFSSMPNLERLVLEGCTSFLEVD 118

Query: 121 SSIENLNNLSMLRLEGCKILGPFP------AFISLSLTNLEVLDLAHCKRLNRLSASICK 174
            SIE LN L  L L+ CK L  FP       F    LT L +LDL +CKRL  L +SICK
Sbjct: 119 PSIEVLNKLIFLNLKNCKKLRSFPRSINELPFSIGYLTGLILLDLENCKRLKSLPSSICK 178

Query: 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234
           LKSL  L L  CSKLESFP I+ENM  L+ + L  TA+K+L  S+EHL GL  L +  C 
Sbjct: 179 LKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCK 238

Query: 235 KLSKLPDNLGSLRSLKRL-HTGKSAISQLPSSIADLK-----QVDG 274
            L+ LP ++G+L+SL+ L  +G S + QLP ++  L+     Q DG
Sbjct: 239 NLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADG 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 161/281 (57%), Gaps = 27/281 (9%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M NLR LKFY   + G     +K+ L QGLD L  ELRYLHWHGYPL++LP  +    LV
Sbjct: 548 MYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYLHWHGYPLKSLPARIHLMNLV 607

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
           VL LP S V+ LW+  K+  KLK +DL  SQ L R+ +L+                    
Sbjct: 608 VLVLPYSKVKRLWKGCKDLKKLKVIDLSYSQALIRITELTTA------------------ 649

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                 +NLS ++L GCK L   P+  +    +L  L++ +C +L  L +SICKLKSL  
Sbjct: 650 ------SNLSYMKLSGCKNLRSMPS--TTRWKSLSTLEMNYCTKLESLPSSICKLKSLES 701

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP 240
           L L  CS L+SFP ILE+M RL+ + L  TAIKELPSS+E L+GL  + +E C  L+ LP
Sbjct: 702 LSLCGCSNLQSFPEILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLP 761

Query: 241 DNLGSLRSLKRLH-TGKSAISQLPSSIADLKQVDGLSFYGC 280
           ++  +L++L  L  T    + +LP  +++L  ++ LS   C
Sbjct: 762 ESFCNLKALYWLFLTFCPKLEKLPEKLSNLTTLEDLSVGVC 802

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495221|ref|XP_002274238.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 176/351 (50%), Gaps = 73/351 (20%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M  LRLL+ Y HNL+    +S  +HL Q   +   ELRYLHW G+ L +LP+N   +KLV
Sbjct: 545 MKKLRLLRVY-HNLKN---ISDTIHLPQDFKFPSHELRYLHWDGWTLESLPSNFHGEKLV 600

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L+L  S+++ LW+E K   KLK ++L NSQ+L   P+LS  P+++R+ L  CT+L  + 
Sbjct: 601 ELSLKHSSIKRLWKEHKCLGKLKVINLSNSQHLVECPNLSGAPHVKRLILDGCTSLLEVH 660

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLS------------------------------ 150
            S+  L  L++L ++ CK+L  FP+   L                               
Sbjct: 661 PSVAKLKRLTILNMKNCKMLHHFPSITGLESLKVLNLSGCSKLDKFPEIQGYMEYLSELN 720

Query: 151 ---------------LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195
                          L  L  LD+ +CK L  L ++IC LKSL  L    CS LE FP I
Sbjct: 721 LEGTAIVELPSSVVFLPQLVSLDMKNCKNLKILPSNICSLKSLETLVFSGCSGLEMFPEI 780

Query: 196 LENMARLEYIDLRLTAIKELPSSVEHLEGL--------KELR----------------ME 231
           +E M  L+ + L  T+IKELP S+ HL+GL        K LR                + 
Sbjct: 781 MEVMESLQKLLLDGTSIKELPPSIVHLKGLQLLSLRKCKNLRSLPNSICSLRSLETLIVS 840

Query: 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRG 282
            C  L+KLP+ LGSL+ L  L    +AI+Q P S+  L+ +  LSF GC+G
Sbjct: 841 GCSNLNKLPEELGSLQYLMILQADGTAITQPPFSLVHLRNLKELSFRGCKG 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 176/351 (50%), Gaps = 73/351 (20%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M  LRLL+ Y HNL+    +S  +HL Q   +   ELRYLHW G+ L +LP+N   +KLV
Sbjct: 558 MKKLRLLRVY-HNLKN---ISDTIHLPQDFKFPSHELRYLHWDGWTLESLPSNFHGEKLV 613

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L+L  S+++ LW+E K   KLK ++L NSQ+L   P+LS  P+++R+ L  CT+L  + 
Sbjct: 614 ELSLKHSSIKRLWKEHKCLGKLKVINLSNSQHLVECPNLSGAPHVKRLILDGCTSLLEVH 673

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLS------------------------------ 150
            S+  L  L++L ++ CK+L  FP+   L                               
Sbjct: 674 PSVAKLKRLTILNMKNCKMLHHFPSITGLESLKVLNLSGCSKLDKFPEIQGYMEYLSELN 733

Query: 151 ---------------LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195
                          L  L  LD+ +CK L  L ++IC LKSL  L    CS LE FP I
Sbjct: 734 LEGTAIVELPSSVVFLPQLVSLDMKNCKNLKILPSNICSLKSLETLVFSGCSGLEMFPEI 793

Query: 196 LENMARLEYIDLRLTAIKELPSSVEHLEGL--------KELR----------------ME 231
           +E M  L+ + L  T+IKELP S+ HL+GL        K LR                + 
Sbjct: 794 MEVMESLQKLLLDGTSIKELPPSIVHLKGLQLLSLRKCKNLRSLPNSICSLRSLETLIVS 853

Query: 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRG 282
            C  L+KLP+ LGSL+ L  L    +AI+Q P S+  L+ +  LSF GC+G
Sbjct: 854 GCSNLNKLPEELGSLQYLMILQADGTAITQPPFSLVHLRNLKELSFRGCKG 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/284 (40%), Positives = 161/284 (56%), Gaps = 16/284 (5%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           MT LR LKF               ++ QG ++LP+ELR+L WHGYP ++LP +   D+LV
Sbjct: 559 MTRLRFLKF------------QNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLV 606

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L L  S +  LW+  K+  KLK ++L +SQ L RMPD S TPNLER+ L  CT+L  I+
Sbjct: 607 SLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRMPDFSVTPNLERLVLEECTSLVEIN 666

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
            SIENL  L +L L+ C+ L   P  I L    LE+L L  C +L        K+  L+ 
Sbjct: 667 FSIENLGKLVLLNLKNCRNLKTLPKRIRLE--KLEILVLTGCSKLRTFPEIEEKMNCLAE 724

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKL 239
           L L + + L   P  +EN++ +  I+L     ++ LPSS+  L+ LK L +  C KL  L
Sbjct: 725 LYL-DATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNL 783

Query: 240 PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
           PD+LG L  L++LH   +AI  +PSS++ LK +  LS  GC  L
Sbjct: 784 PDDLGLLVGLEQLHCTHTAIQTIPSSMSLLKNLKRLSLSGCNAL 827

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 168/363 (46%), Gaps = 81/363 (22%)

Query: 1   MTNLRLLKFYLHNLRGD------------PIMSSKVHLDQGLDYLPEELRYLHWHGYPLR 48
           M  LR+L+FY   + G             P    K HL     +L   LR LHW GYPL+
Sbjct: 557 MNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTECKFHLSGDFKFLSNHLRSLHWDGYPLK 616

Query: 49  TLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM 108
           +LP+N   +KL+ L +  S +E LWE  K   KLK ++L +SQ+L + PD S  P L R+
Sbjct: 617 SLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPDFSGAPKLRRI 676

Query: 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS------------------ 150
            L  CT+L  +  SI  L  L  L LEGCK L  F + I L                   
Sbjct: 677 ILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFSSSIHLESLQTITLSGCSKLKKFPE 736

Query: 151 ---------------------------LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRL 183
                                      L  L +L+L  CK L  L   I KLKSL  L L
Sbjct: 737 VQGAMDNLPELSLKGTAIKGLPLSIEYLNGLSLLNLEECKSLESLPGCIFKLKSLKTLIL 796

Query: 184 YNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEG------------------- 224
            NCS+L+  P I ENM  L+ + L  T ++ELPSS+EHL G                   
Sbjct: 797 SNCSRLKKLPEIQENMESLKKLFLDDTGLRELPSSIEHLNGLVLLKLKNCKKLASLPESI 856

Query: 225 -----LKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279
                L+ L +  C +L KLPD++GSL+ L +L    + I ++P+SI  L +++ LS  G
Sbjct: 857 CKLTSLQTLTLSGCSELKKLPDDMGSLQCLVKLKANGTGIQEVPTSITLLTKLEVLSLAG 916

Query: 280 CRG 282
           C+G
Sbjct: 917 CKG 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 171/363 (47%), Gaps = 81/363 (22%)

Query: 1   MTNLRLLKFYLHNLRGD------------PIMSSKVHLDQGLDYLPEELRYLHWHGYPLR 48
           M  LR+L+FY   + G             P    K HL     +L   LR L+W GYPL+
Sbjct: 562 MNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLK 621

Query: 49  TLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM 108
           +LP+N   +KL+ L +  S +E LWE  K   KLK ++L +SQ+L + PD S  P L R+
Sbjct: 622 SLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPDFSGAPKLRRI 681

Query: 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCK------------------------------ 138
            L  CT+L  +  SI  L  L  L LEGCK                              
Sbjct: 682 ILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFLSSIHLESLQILTLSGCSKLKKFPE 741

Query: 139 ILGPFPAFISLS---------------LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRL 183
           + GP   F  LS               L  L +L+L  CK L  L + I KLKSL  L L
Sbjct: 742 VQGPMDNFSELSLKGTAIKGLPLSIEYLNGLALLNLEECKSLESLPSCIFKLKSLKTLIL 801

Query: 184 YNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS------ 237
            NCS+L+  P I ENM  L+ + L  T ++ELPSS+EHL GL  L+++ C +L+      
Sbjct: 802 SNCSRLKKLPEIGENMESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESF 861

Query: 238 ------------------KLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279
                             KLPD++GSL+ L +L    S I ++P+SI  L ++  LS  G
Sbjct: 862 CKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVPTSITLLTKLQVLSLAG 921

Query: 280 CRG 282
           C+G
Sbjct: 922 CKG 924

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 159/307 (51%), Gaps = 51/307 (16%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M  LRLLK +  N  G      K  L    ++   ELRYL+WHGYP  +LP+   ++ L+
Sbjct: 555 MNRLRLLKVF--NFSGIGKEGYKEPLSVSFEFPSYELRYLYWHGYPFGSLPSKFHSENLI 612

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            LN+  S +  LW+  +    L +++L NSQ+L  +P+ S  PNLER             
Sbjct: 613 ELNMCYSYMRELWKGNEVLDNLNTIELSNSQHLIHLPNFSSMPNLER------------- 659

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                      L LEGC  +   P  I   LT L +LDL +CKRL  L +SICKLKSL  
Sbjct: 660 -----------LVLEGCTTISELPFSIGY-LTGLILLDLENCKRLKSLPSSICKLKSLET 707

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME--------- 231
           L L  CSKLESFP I+ENM  L+ + L  TA+K+L  S+EHL GL  L +          
Sbjct: 708 LILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLP 767

Query: 232 ---------------YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLS 276
                           C KL +LP+NLGSL+ L +L    + + Q PSSI  L+ ++ LS
Sbjct: 768 CSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILS 827

Query: 277 FYGCRGL 283
           F GC+GL
Sbjct: 828 FGGCKGL 834

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/284 (40%), Positives = 159/284 (55%), Gaps = 16/284 (5%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           MT LR LKF               ++ QG ++LP+ELR+L WHGYP ++LP +   D+LV
Sbjct: 559 MTRLRFLKF------------RNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLV 606

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L L  S +  LW+  K+  KLK ++L +SQ L R PD S TPNLER+ L  CT+L  I+
Sbjct: 607 GLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEIN 666

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
            SIENL  L +L L+ C+ L   P  I L    LE+L L  C +L        K+  L+ 
Sbjct: 667 FSIENLGKLVLLNLKNCRNLKTLPKRIRLE--KLEILVLTGCSKLRTFPEIEEKMNCLAE 724

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKL 239
           L L   + L   P  +EN++ +  I+L     ++ LPSS+  L+ LK L +  C KL  L
Sbjct: 725 LYL-GATSLSGLPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNL 783

Query: 240 PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
           PD+LG L  L++LH   +AI  +PSS++ LK +  LS  GC  L
Sbjct: 784 PDDLGLLVGLEKLHCTHTAIHTIPSSMSLLKNLKRLSLRGCNAL 827

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740941|emb|CBI31253.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 171/350 (48%), Gaps = 73/350 (20%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M  LRLLK Y ++  G      +VHL +  ++ P +LRY+HW    LR+LP++   ++L+
Sbjct: 579 MKQLRLLKIYCNDRDGLTREEYRVHLPKDFEF-PHDLRYIHWQRCTLRSLPSSFCGEQLI 637

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            +NL  SN++ LW+  K   KLK +DL NS+ L +MP+ S  PNLER+ L  CT+L  + 
Sbjct: 638 EINLKSSNIKRLWKGNKRLEKLKGIDLSNSKQLVKMPEFSSMPNLERLNLEGCTSLCELH 697

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR------------- 167
           SSI +L  L+ L L GC+ L  FP   ++   +LEVL L  C++L +             
Sbjct: 698 SSIGDLKQLTYLNLRGCEQLQSFPT--NMKFESLEVLCLNQCRKLKKIPKILGNMGHLKK 755

Query: 168 ----------LSASICKLKSLSWLRLYNCSKLESFPGI---------------------- 195
                     L  SI  L+SL  L L NCSK E FP I                      
Sbjct: 756 LCLNGSGIKELPDSIGYLESLEILDLSNCSKFEKFPEIRGNMKCLKRLSLDETAIKELPN 815

Query: 196 -------------------------LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM 230
                                      NM RL  ++LR + IKELP S+  LE L +L +
Sbjct: 816 SIGSLTSLELLSLRKCSKFEKFSDVFTNMRRLLILNLRESGIKELPGSIGCLEFLLQLDL 875

Query: 231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC 280
            YC K  K P+  G+++ LKRL   ++AI +LP+SI  +  ++ LS   C
Sbjct: 876 SYCSKFEKFPEIRGNMKRLKRLSLDETAIKELPNSIGSVTSLEILSLRKC 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.957	0.143	0.341	3.4e-33
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.968	0.225	0.336	3.1e-31
TAIR|locus:2173293	1059	AT5G38340 [Arabidopsis thalian	0.946	0.253	0.332	1.1e-30
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.883	0.193	0.332	5e-30
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.964	0.229	0.322	1.9e-29
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.978	0.233	0.328	2.5e-29
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.954	0.219	0.331	2.4e-28
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.954	0.214	0.314	3.2e-28
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.858	0.199	0.344	3.8e-28
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.957	0.222	0.320	4.9e-28

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 99/290 (34%), Positives = 144/290 (49%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             M NLRLLK Y             V   QGL+YLP +LR LHW  YPL +LP + + + LV
Sbjct:  1175 MCNLRLLKLYCSKAEE----KHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLV 1230

Query:    61 VLNLPCSNVELLWEEKKEAF--------KLKSVDLCNSQNLTRMPDLSETPNLERMYLLN 112
              LNLP S  + LW+ KK  F        KLK + L  S  LT++P LS   NLE + L  
Sbjct:  1231 ELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEG 1290

Query:   113 CTNLPFXXXXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI 172
             C +L               L L+GC  L   P+ + L   +LEVL+L+ C +L       
Sbjct:  1291 CNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLE--SLEVLNLSGCSKLGNFPEIS 1348

Query:   173 CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRME 231
               +K L        + ++  P  ++N+  LE +DL  +  +K LP+S+  L+ L+ L + 
Sbjct:  1349 PNVKEL----YMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLS 1404

Query:   232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
              C  L + PD+   ++ L+ L   ++ I +LPSSI+ L  +D L F   R
Sbjct:  1405 GCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLFVDSR 1454

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 96/285 (33%), Positives = 152/285 (53%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             M+NL+ L+  + N  G+ +  + V L   L Y+  +LR L W  +P+   P+  + + LV
Sbjct:   599 MSNLQFLR--VKNF-GN-LFPAIVCLPHCLTYISRKLRLLDWMYFPMTCFPSKFNPEFLV 654

Query:    61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFXX 120
              LN+  S +E LWEE +    LK +DL +S+NL  +PDLS   NLE + L  C++L    
Sbjct:   655 ELNMWGSKLEKLWEEIQPLRNLKRMDLFSSKNLKELPDLSSATNLEVLNLNGCSSLVELP 714

Query:   121 XXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                        L L GC  L   P+ I  ++ NL+ +D +HC+ L  L +SI    +L  
Sbjct:   715 FSIGNATKLLKLELSGCSSLLELPSSIGNAI-NLQTIDFSHCENLVELPSSIGNATNLKE 773

Query:   181 LRLYNCSKLESFPGILENMARLEYIDLRL-TAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
             L L  CS L+  P  + N   L+ + L   +++KELPSS+ +   LKEL +  C  L KL
Sbjct:   774 LDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLKELHLTCCSSLIKL 833

Query:   240 PDNLGSLRSLKRLH-TGKSAISQLPSSIA---DLKQVDGLSFYGC 280
             P ++G+  +L++L   G  ++ +LPS I    +LK ++ L +  C
Sbjct:   834 PSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILN-LGYLSC 877

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2173293 AT5G38340 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 94/283 (33%), Positives = 149/283 (52%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             MTNL+ L+     LR     S K++L QGL+YLP++LR + W  +P+++LP+N  T  LV
Sbjct:   607 MTNLKFLRV----LRD---RSEKLYLPQGLNYLPKKLRLIEWDYFPMKSLPSNFCTTYLV 659

Query:    61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFXX 120
              L++  S +E LWE K+    LK ++L NS+NL  +PDLS    L+ + L  C++L    
Sbjct:   660 NLHMRKSKLEKLWEGKQPLGNLKWMNLSNSRNLKELPDLSTATKLQDLNLTRCSSLVEIP 719

Query:   121 XXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                        L L  C  L   P+ I  SL  L  L L  C +L  L  +I  L+SL  
Sbjct:   720 FSIGNTTNLEKLNLVMCTSLVELPSSIG-SLHKLRELRLRGCSKLEVLPTNI-SLESLDN 777

Query:   181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP 240
             L + +CS L+SFP I  N   ++++ L  TAI E+PS ++    L+   + Y   L + P
Sbjct:   778 LDITDCSLLKSFPDISTN---IKHLSLARTAINEVPSRIKSWSRLRYFVVSYNENLKESP 834

Query:   241 DNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
                 +L ++  L +  + + +LP  +  + +++ L   GC+ L
Sbjct:   835 H---ALDTITMLSSNDTKMQELPRWVKKISRLETLMLEGCKNL 874

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 5.0e-30, P = 5.0e-30
 Identities = 89/268 (33%), Positives = 137/268 (51%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             ++NL+LL FY  +  G+    ++VHL  GL YLP +LRYL W GYPL+T+P+    + LV
Sbjct:   550 LSNLKLLNFYDLSFDGE----TRVHLPNGLSYLPRKLRYLRWDGYPLKTMPSRFFPEFLV 605

Query:    61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFXX 120
              L +  SN+E LW+  +    LK +DL   + L  +PDLS+  NLE + L  C +L    
Sbjct:   606 ELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVEVT 665

Query:   121 XXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                          L  C  L   P  I + L +LE + ++ C  L            +SW
Sbjct:   666 PSIKNLKGLSCFYLTNCIQLKDIP--IGIILKSLETVGMSGCSSLKHFP-------EISW 716

Query:   181 --LRLY-NCSKLESFPGILENMARLEYIDLR-LTAIKELPSSVEHLEGLKELRMEYCYKL 236
                RLY + +K+E  P  +  ++ L  +D+     ++ LPS + HL  LK L ++ C +L
Sbjct:   717 NTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRL 776

Query:   237 SKLPDNLGSLRSLKRLH-TGKSAISQLP 263
               LPD L +L SL+ L  +G   +++ P
Sbjct:   777 ENLPDTLQNLTSLETLEVSGCLNVNEFP 804

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 92/285 (32%), Positives = 144/285 (50%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             M+NL+ L+F   +          + L +GL YL  +L+ L W  +P+  LP+ ++ + L+
Sbjct:   605 MSNLQFLRFDCDH--------DTLQLSRGLSYLSRKLQLLDWIYFPMTCLPSTVNVEFLI 656

Query:    61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFXX 120
              LNL  S +++LWE  K    L+ +DL  S NL  +PDLS   NL ++ L NC++L    
Sbjct:   657 ELNLTHSKLDMLWEGVKPLHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLP 716

Query:   121 XXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                        L L GC  L   P+F      NL+ L L +C  L  L +SI    +L  
Sbjct:   717 SCIGNAINLEDLDLNGCSSLVELPSFGDA--INLQKLLLRYCSNLVELPSSIGNAINLRE 774

Query:   181 LRLYNCSKLESFPGILENMARLEYIDLR-LTAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
             L LY CS L   P  + N   L  +DL   + + ELPSS+ +   L++L +  C KL +L
Sbjct:   775 LDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLEL 834

Query:   240 PDNLGSLRSLKRLHTGK-SAISQLPSSIADLKQVDGLSFYGCRGL 283
             P ++G+  +L+ L     S++ +LPSSI +   +  ++   C  L
Sbjct:   835 PSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNL 879

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 94/286 (32%), Positives = 144/286 (50%)

Query:     1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
             M NL+ L+F  H+  GD      ++L QGL ++  +LR LHW  YPL  LP   + + LV
Sbjct:   581 MCNLQFLRF--HHPYGDRCHDI-LYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLV 637

Query:    61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFXX 120
              +N+  S +E LW+  +    LK +DL    NL  +PD S   NL+ + L+NC +L    
Sbjct:   638 KINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELP 697

Query:   121 XXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
                        L L  C  L   P+ I  +LTNL+ L L  C  L +L +S   + SL  
Sbjct:   698 SSIGNATNLLELDLIDCSSLVKLPSSIG-NLTNLKKLFLNRCSSLVKLPSSFGNVTSLKE 756

Query:   181 LRLYNCSKLESFPGILENMARLE--YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSK 238
             L L  CS L   P  + N+  L+  Y D   +++ +LPSS+ +   LKEL +  C  L +
Sbjct:   757 LNLSGCSSLLEIPSSIGNIVNLKKVYAD-GCSSLVQLPSSIGNNTNLKELHLLNCSSLME 815

Query:   239 LPDNLGSLRSLKRLH-TGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
              P ++ +L  L+ L+ +G  ++ +LPS I ++  +  L    C  L
Sbjct:   816 CPSSMLNLTRLEDLNLSGCLSLVKLPS-IGNVINLQSLYLSDCSSL 860

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 95/287 (33%), Positives = 146/287 (50%)

Query:     1 MTNLRLLKFYLHNLR---GDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTD 57
             M NL+ LK +  N R   G+ I+S    L QGL+ LP +LR LHW+ +PLR +P+N   +
Sbjct:   547 MHNLQFLKVF-ENWRRGSGEGILS----LPQGLNSLPRKLRLLHWYKFPLRCMPSNFKAE 601

Query:    58 KLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP 117
              LV L +  S +E LWE  ++   LK +DL  S+NL  +PDLS   NLE M L +C +L 
Sbjct:   602 YLVNLEMAYSQLERLWEGTQQLGSLKKMDLSKSENLKEIPDLSYAVNLEEMDLCSCKSLV 661

Query:   118 FXXXXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKS 177
                          +LR+  C  +   P    L+L +L++L+L  C +L R    I +  +
Sbjct:   662 TLPSSVRNLDKLRVLRMSSCSNVEVLPT--DLNLESLDLLNLEDCSQL-RSFPQISR--N 716

Query:   178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237
             +S L L   +  E     +ENM+RL ++      +K LPS+    E L  L M +  KL 
Sbjct:   717 ISILNLSGTAIDEESSLWIENMSRLTHLRWDFCPLKSLPSNFRQ-EHLVSLHMTHS-KLE 774

Query:   238 KLPDNLGSLRSLKRLHTGKSA-ISQLPSSIADLKQVDGLSFYGCRGL 283
             KL +      +L  +    S  + + P+ ++ +  +D L  YGC+ L
Sbjct:   775 KLWEGAQPFGNLVNIDLSLSEKLKEFPN-LSKVTNLDTLDLYGCKSL 820

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 87/277 (31%), Positives = 134/277 (48%)

Query:     1 MTNLRLLKFY-LHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKL 59
             M +LR LKFY  H  R      SK++  +GL++LP+ELRYL+W  YP + LP N     L
Sbjct:   582 MDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRYLNWLKYPEKNLPINFDPKNL 641

Query:    60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFX 119
             + L LP S +E +WEE+K+   L+ +DL +S  L  +  LS    L+ + L  CT L   
Sbjct:   642 IDLKLPYSQIEQIWEEEKDTSNLQWLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTL 701

Query:   120 XXXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS 179
                         L L GC  L   P    ++L  L  L L++C R          L+ L 
Sbjct:   702 PQVLQNMESLMFLNLRGCTSLESLP---DITLVGLRTLILSNCSRFKEFKLIAKNLEEL- 757

Query:   180 WLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
             +L      +L S  G L+ +  L+  D +   +  LP S+ +L+ ++E+ +  C  L   
Sbjct:   758 YLDGTAIKELPSTIGDLQKLISLKLKDCK--NLLSLPDSIGNLKAIQEIILSGCSSLESF 815

Query:   240 PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLS 276
             P+   +L+ LK L    +AI ++P  +  L    GL+
Sbjct:   816 PEVNQNLKHLKTLLLDGTAIKKIPDILHHLSPDQGLT 852

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 3.8e-28, P = 3.8e-28
 Identities = 86/250 (34%), Positives = 130/250 (52%)

Query:    36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR 95
             ++R L W+ Y    LP+  + + LV L++  S +  LWE  K+   LK +DL NS++L  
Sbjct:   672 KIRSLKWYSYQNICLPSTFNPEFLVELHMSFSKLRKLWEGTKQLRNLKWMDLSNSEDLKE 731

Query:    96 MPDLSETPNLERMYLLNCTNLPFXXXXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLE 155
             +P+LS   NLE + L +C++L               L L+ C  L   P+F +   T LE
Sbjct:   732 LPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNA--TKLE 789

Query:   156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL-RLTAIKE 214
              L L +C  L +L  SI    +L  L L NCS++   P I EN   L+ +DL   +++ E
Sbjct:   790 ELYLENCSSLEKLPPSI-NANNLQQLSLINCSRVVELPAI-ENATNLQKLDLGNCSSLIE 847

Query:   215 LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK-SAISQLPSSIADLKQVD 273
             LP S+     LKEL +  C  L KLP ++G + +LK       S + +LP +I +LK +D
Sbjct:   848 LPLSIGTATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPINI-NLKFLD 906

Query:   274 GLSFYGCRGL 283
              L+  GC  L
Sbjct:   907 TLNLAGCSQL 916

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 4.9e-28, P = 4.9e-28
 Identities = 90/281 (32%), Positives = 140/281 (49%)

Query:     1 MTNLRLLKFY-LHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKL 59
             M NL+ LK Y  H  RG      K+HL +GL +LP EL YLHWHGYPL+++P +     L
Sbjct:   564 MYNLKYLKIYDSHCSRGCEA-EFKLHLRRGLSFLPNELTYLHWHGYPLQSIPLDFDPKNL 622

Query:    60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFX 119
             V L LP S +E +W+++K+   LK VDL +S NL +   L+   NLER+ L  CT+L   
Sbjct:   623 VDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLANAHNLERLNLEGCTSLKKL 682

Query:   120 XXXXXXXXXXXMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS 179
                         L L  C  L   P  I     +L+ L L+ C  L +       ++ L 
Sbjct:   683 PSTINCLEKLIYLNLRDCTSLRSLPKGIKTQ--SLQTLILSGCSSLKKFPLISENVEVL- 739

Query:   180 WLRLYNCSKLESFPGILENMARLEYIDLR-LTAIKELPSSVEHLEGLKELRMEYCYKLSK 238
                L + + ++S P  ++   RL  ++L+    +K L S +  L+ L+EL +  C +L  
Sbjct:   740 ---LLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEV 796

Query:   239 LPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279
              P+    + SL+ L    ++I+++P  +  L  +   S  G
Sbjct:   797 FPEIKEDMESLEILLMDDTSITEMPKMM-HLSNIKTFSLCG 836

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038637001	SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (387 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027409001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (221 aa)			•						0.482
	GSVIVG00018611001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (409 aa)			•						0.481
	GSVIVG00028556001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (465 aa)			•						0.473
	GSVIVG00011856001	SubName- Full=Chromosome undetermined scaffold_343, whole genome shotgun sequence; (273 aa)			•						0.467
	GSVIVG00025156001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (412 aa)			•						0.458
	GSVIVG00001345001	SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (476 aa)			•						0.442
	GSVIVG00016638001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (307 aa)			•						0.423
	GSVIVG00038850001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (295 aa)			•						0.408
	GSVIVG00002860001	SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (558 aa)			•						0.408
	GSVIVG00037306001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (446 aa)			•						0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-41
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  151 bits (383), Expect = 2e-41
 Identities = 105/292 (35%), Positives = 146/292 (50%), Gaps = 42/292 (14%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           M NL  LKFY      D     + HL +G DYLP +LR L W  YPLR +P+N   + LV
Sbjct: 557 MRNLLFLKFYTKKW--DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L +  S +E LW+       L+++DL  S+NL  +PDLS   NLE + L +C++L  + 
Sbjct: 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP 674

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
           SSI+ LN L  L +  C+              NLE+L                 LKSL  
Sbjct: 675 SSIQYLNKLEDLDMSRCE--------------NLEILPTG------------INLKSLYR 708

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP 240
           L L  CS+L+SFP I  N++ L   DL  TAI+E PS++  LE L EL +    K  KL 
Sbjct: 709 LNLSGCSRLKSFPDISTNISWL---DLDETAIEEFPSNL-RLENLDELIL-CEMKSEKLW 763

Query: 241 DNLGSLR--------SLKRLH-TGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
           + +  L         SL RL  +   ++ +LPSSI +L +++ L    C  L
Sbjct: 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 44/219 (20%)

Query: 33  LPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQN 92
           +   + +L      +   P+NL  + L  L L     E LWE  +    L          
Sbjct: 723 ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL---------- 772

Query: 93  LTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLT 152
           +T +      P+L R++L +  +L  + SSI+NL+ L  L +E C  L   P  I+L   
Sbjct: 773 MTMLS-----PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES- 826

Query: 153 NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAI 212
            LE LDL+                         CS+L +FP I  N++ L   +L  T I
Sbjct: 827 -LESLDLSG------------------------CSRLRTFPDISTNISDL---NLSRTGI 858

Query: 213 KELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKR 251
           +E+P  +E    L  L M  C  L ++  N+  L+ L+ 
Sbjct: 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 52/180 (28%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHC 162
           PNLE + L N      I + I + ++L +L L G  ++G  P  ++ +LT+LE L LA  
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASN 198

Query: 163 KRLNRLSASICKLKSLSWLRL-YNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVE 220
           + + ++   + ++KSL W+ L YN    E  P  +  +  L ++DL    +   +PSS+ 
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 221 HLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFY 278
           +L+ L+ L + Y  KLS  +P ++ SL+ L  L    +++S ++P  +  L+ ++ L  +
Sbjct: 258 NLKNLQYLFL-YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 53  NLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLN 112
            L    L  L+L  + +E L    +    LK++DL  +        LS   NL  + L  
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195

Query: 113 CTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI 172
              +  +   IE L+ L  L L    I+    + +S +L NL  L+L++  +L  L  SI
Sbjct: 196 N-KISDLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSN-NKLEDLPESI 251

Query: 173 CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL 207
             L +L  L L N  ++ S   +  ++  L  +DL
Sbjct: 252 GNLSNLETLDLSNN-QISSISSL-GSLTNLRELDL 284

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 127 NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRL-NRLSASICKLKSLSWLRLYN 185
           NN + LRL+    L   PA I   +T L +LD    K L   L  +I   K+L      N
Sbjct: 178 NNKTELRLKILG-LTTIPACIPEQITTL-ILDNNELKSLPENLQGNI---KTLY----AN 228

Query: 186 CSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL-G 244
            ++L S P  L +   ++ ++L +  I ELP   E L    +    +  K+S LP+NL  
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELP---ERLPSALQSLDLFHNKISCLPENLPE 283

Query: 245 SLRSLKRLHTGKSAI-SQLPSSIADL 269
            LR L         + + LPS I  L
Sbjct: 284 ELRYLSVYDNSIRTLPAHLPSGITHL 309

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.35
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG4341	483	consensus F-box protein containing LRR [General fu	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.86
PLN03150	623	hypothetical protein; Provisional	98.82
PLN03150	623	hypothetical protein; Provisional	98.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.25
PRK15386	426	type III secretion protein GogB; Provisional	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.89
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.28
KOG4308	478	consensus LRR-containing protein [Function unknown	95.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.69
smart00370	26	LRR Leucine-rich repeats, outliers.	92.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.53
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.5
KOG4308	478	consensus LRR-containing protein [Function unknown	89.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.04
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.02

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.5e-29  Score=236.28  Aligned_cols=269  Identities=22%  Similarity=0.269  Sum_probs=173.4

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCC-CcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc-cchhhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLD-YLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE-LLWEEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~l~~~   79 (283)
                      ++|++|++++|.+.+        .+|..+. .++ +|++|++++|.+....+...+++|++|++++|.+. .++..+..+
T Consensus        93 ~~L~~L~Ls~n~~~~--------~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l  163 (968)
T PLN00113         93 PYIQTINLSNNQLSG--------PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF  163 (968)
T ss_pred             CCCCEEECCCCccCC--------cCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC
Confidence            456666666665554        3444332 455 66666666666532222234566666666666665 455566677


Q ss_pred             CCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEe
Q 036017           80 FKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLD  158 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  158 (283)
                      ++|+.|++++|.....++ .+.++++|++|++++|......|..+..+++|++|++++|.+.+.+|..+. .+++|+.|+
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~  242 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLD  242 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEE
Confidence            777777777776555554 466677777777777666556666667777777777777766666666665 677777777


Q ss_pred             ccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCC
Q 036017          159 LAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       159 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +++|.+.+..|..++.+++|+.|++.+|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|...+
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            7776665566666667777777777776666666666666677777777776665 556566666677777776666555


Q ss_pred             CCccccCCCcccceeecCCcccc-cccHHhhccCCCCceeeccC
Q 036017          238 KLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       238 ~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~c  280 (283)
                      .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            56666666666666666666665 55666666666666666655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=5.4e-29  Score=233.97  Aligned_cols=252  Identities=22%  Similarity=0.311  Sum_probs=125.8

Q ss_pred             cCCcCCCcccCceEEEecCCCC-CccCCCC-CCCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCC
Q 036017           26 LDQGLDYLPEELRYLHWHGYPL-RTLPTNL-STDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSE  101 (283)
Q Consensus        26 ~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~  101 (283)
                      +|..+..++ +|++|++++|.+ +.+|..+ ++++|++|++++|.+. .+|..+.++.+|+.|++.+|.....++ .++.
T Consensus       156 ~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCC-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            344445555 555555555554 2333333 5555555555555544 344445555555555555555443343 3455


Q ss_pred             CCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeE
Q 036017          102 TPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL  181 (283)
Q Consensus       102 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  181 (283)
                      +++|++|++++|...+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEIL  313 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence            55555555555544444555555555555555555555444444444 55555555555555444445455555555555


Q ss_pred             eecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          182 RLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ++.+|.+.+..+..+..+++|+.+++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.++
T Consensus       314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence            55555555445555555555555555555554 44444555555555555554443333333333333333333333333


Q ss_pred             -cccHHhhccCCCCceeecc
Q 036017          261 -QLPSSIADLKQVDGLSFYG  279 (283)
Q Consensus       261 -~~~~~~~~~~~L~~L~l~~  279 (283)
                       .+|..+..+++|++|++.+
T Consensus       394 ~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        394 GEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             ccCCHHHhCCCCCCEEECcC
Confidence             3333333444444444433

>PLN03210 Resistant to P

Probab=99.94  E-value=5.4e-25  Score=208.15  Aligned_cols=275  Identities=33%  Similarity=0.593  Sum_probs=200.7

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      |++|+.|.++.+.+..  .......+|..+..+|.+|+.|.+.++++..+|..+...+|+.|+++++.+..++.....++
T Consensus       557 m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~  634 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLT  634 (1153)
T ss_pred             CccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCC
Confidence            6789999987654321  11223467788888887899999999999999998888999999999999999988888899


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA  160 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (283)
                      +|+.++++++.....++.+..+++|++|++.+|.....+|..+..+++|+.|++++|...+.+|..+  .+++|+.|+++
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Ls  712 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLS  712 (1153)
T ss_pred             CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCC
Confidence            9999999998777888888899999999999998888888889999999999999987666677654  57778888777


Q ss_pred             CCcCcccchhhh--------------------------------------------------cCCCCCCeEeecCCCCCC
Q 036017          161 HCKRLNRLSASI--------------------------------------------------CKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       161 ~~~~~~~~~~~l--------------------------------------------------~~~~~L~~L~l~~~~~~~  190 (283)
                      +|.....+|...                                                  ..+++|+.|++++|....
T Consensus       713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~  792 (1153)
T PLN03210        713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV  792 (1153)
T ss_pred             CCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence            765433322110                                                  011345555555555555


Q ss_pred             CCchhhhcCCCCcEEeecCCC-ccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhcc
Q 036017          191 SFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL  269 (283)
Q Consensus       191 ~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~  269 (283)
                      .+|..+..+++|+.|++++|. +..+|..+ .+++|+.|++++|.....+|..   ..+|+.|++++|.++.+|..+..+
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l  868 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKF  868 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcC
Confidence            555556666666666666643 34555433 4556666666666555444332   246777788888888888888888


Q ss_pred             CCCCceeeccCCCC
Q 036017          270 KQVDGLSFYGCRGL  283 (283)
Q Consensus       270 ~~L~~L~l~~c~~l  283 (283)
                      ++|++|++.+|+++
T Consensus       869 ~~L~~L~L~~C~~L  882 (1153)
T PLN03210        869 SNLSFLDMNGCNNL  882 (1153)
T ss_pred             CCCCEEECCCCCCc
Confidence            88888888887654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=7.9e-27  Score=196.45  Aligned_cols=267  Identities=21%  Similarity=0.292  Sum_probs=212.8

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchhhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~l~~~   79 (283)
                      +.|..|++++|.+.         ..|..+...+ ++-.|++++++++++|...  ++..|-.|++++|.+..+|..+..+
T Consensus       103 ~dLt~lDLShNqL~---------EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR---------EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL  172 (1255)
T ss_pred             ccceeeecchhhhh---------hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence            45666677766666         5667777777 7777888888887777655  7777778888888888777777777


Q ss_pred             CCccEEEccCCCCCCC-CCCCCCCCCCcEEeeeCCCCC-CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017           80 FKLKSVDLCNSQNLTR-MPDLSETPNLERMYLLNCTNL-PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL  157 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (283)
                      .+|+.|.+++|...-. +..+..+.+|+.|.+++.+.. ..+|..+..+.+|..++++.|.+ ..+|..+. .+++|+.|
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly-~l~~LrrL  250 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLY-KLRNLRRL  250 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHh-hhhhhhee
Confidence            8888888877763322 123445566667777765432 35788889999999999999875 44888888 89999999


Q ss_pred             eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--ccchhhhcCCCccEEecccccC
Q 036017          158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      ++++|.+. .+....+.+.++++|+++.|.++ .+|..+++++.|+.|...+|.++  ++|+.++.+..|+.+..++ +.
T Consensus       251 NLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~  327 (1255)
T KOG0444|consen  251 NLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NK  327 (1255)
T ss_pred             ccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cc
Confidence            99998754 33444566788999999996655 58888999999999999999887  9999999999999999987 45


Q ss_pred             CCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCCCC
Q 036017          236 LSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL  283 (283)
Q Consensus       236 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~~l  283 (283)
                      ++-+|+.++.|..|+.|.++.|.+..+|..+.-++.|+.|+++.++++
T Consensus       328 LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  328 LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            678899999999999999999999999999999999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=181.78  Aligned_cols=266  Identities=21%  Similarity=0.222  Sum_probs=159.9

Q ss_pred             ceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccch-hhhhccCC
Q 036017            4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLW-EEKKEAFK   81 (283)
Q Consensus         4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~   81 (283)
                      .+.|++++|.++.        .-+.++.++| +|+.+++..+.++.+|.+. -.-+|+.|++.+|.+..+. +.+..++.
T Consensus        80 t~~LdlsnNkl~~--------id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   80 TQTLDLSNNKLSH--------IDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             eeeeecccccccc--------CcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence            3568888887764        3345678889 9999999999999988887 4466999999999888664 45667788


Q ss_pred             ccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEec
Q 036017           82 LKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL  159 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  159 (283)
                      |+.||++.|. +..++  .+..-.++++|++++|.....-...+..+.+|..|.++.|.++. +|......+++|+.|++
T Consensus       151 lrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  151 LRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhc
Confidence            8888888776 33333  45555678888887765443333445666677777777777655 55444425777777777


Q ss_pred             cCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc------------------------hhhhcCCCCcEEeecCCCccc-
Q 036017          160 AHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP------------------------GILENMARLEYIDLRLTAIKE-  214 (283)
Q Consensus       160 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------------------------~~~~~~~~L~~l~l~~~~l~~-  214 (283)
                      .+|++...--..+.++++|+.|.+..|.+..--.                        .++.++..|+.|++++|.+.. 
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            7765432222234455555555555544433222                        344444555555555555542 


Q ss_pred             cchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccC
Q 036017          215 LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGC  280 (283)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c  280 (283)
                      .++.|+.+++|++|+++.|+...--+..+..+..|+.|.++.|.|+.+.+ .+..+++|++|+++.+
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            23345555555555555544333223334445555555555555554432 3345556666665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=4.3e-25  Score=184.25  Aligned_cols=245  Identities=20%  Similarity=0.208  Sum_probs=169.9

Q ss_pred             CceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCC-CCCCCCCCCCcEEeee
Q 036017           36 ELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTR-MPDLSETPNLERMYLL  111 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~  111 (283)
                      ++++|+++++.++++....  ++.+|.++.++.|++..+|. .+.++++|+.|++..|.+... ...|..+++|+.|.+.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            6888888888776654332  66678888888888887764 344588888888877763322 2356777777777777


Q ss_pred             CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC
Q 036017          112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES  191 (283)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  191 (283)
                      .|....---..+..+.++++|++..|++...-..+++ ++++|+.|++++|.+...-+..+..+++|++|+++.|.+..-
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            6654433334567777888888888776543344555 778888888888776655566677778888888888776665


Q ss_pred             CchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCC---CCCccccCCCcccceeecCCccccccc-HHh
Q 036017          192 FPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKL---SKLPDNLGSLRSLKRLHTGKSAISQLP-SSI  266 (283)
Q Consensus       192 ~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~---~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~  266 (283)
                      -+..+..+..|+.|.+++|.+..+.+. +..+++|++|++.+|...   ++-...+..+++|+.|++.+|++..++ +.+
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf  412 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF  412 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence            556677777788888888877755554 467777888887776544   233344666778888888888887776 466


Q ss_pred             hccCCCCceeeccCC
Q 036017          267 ADLKQVDGLSFYGCR  281 (283)
Q Consensus       267 ~~~~~L~~L~l~~c~  281 (283)
                      ..++.|+.|++.++.
T Consensus       413 sgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNA  427 (873)
T ss_pred             ccCcccceecCCCCc
Confidence            777888888877663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=5.4e-25  Score=185.51  Aligned_cols=252  Identities=23%  Similarity=0.299  Sum_probs=164.7

Q ss_pred             cCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhh-hhccCCccEEEccCCCCCCCCCCCCCCC
Q 036017           26 LDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEE-KKEAFKLKSVDLCNSQNLTRMPDLSETP  103 (283)
Q Consensus        26 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (283)
                      +|.-+-.+. .|+.|+++++++..+|... ...++-.|++++|++..+|.. +.++..|-.|++++|......|.+.++.
T Consensus        95 iP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen   95 IPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             CCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            344444444 5555555555555555444 445555555555555555543 2344555555555555333333455666


Q ss_pred             CCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017          104 NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR  182 (283)
Q Consensus       104 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  182 (283)
                      .|++|.+++|+..-.--..+..+.+|++|.+++.+.+ ..+|..+- .+.+|..+|++.|. ....|..+..+++|+.|+
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENN-LPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccC-CCcchHHHhhhhhhheec
Confidence            6666666665543332233444455666666655432 23555554 66777777887755 455677777788888888


Q ss_pred             ecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCccccCCCcccceeecCCccccc
Q 036017          183 LYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLPDNLGSLRSLKRLHTGKSAISQ  261 (283)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~i~~  261 (283)
                      +++|.++. +.-......+|++|++++|+++.+|+.+..++.|+.|.+.+|... ..+|+.++++..|+.+..++|.+..
T Consensus       252 LS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl  330 (1255)
T KOG0444|consen  252 LSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL  330 (1255)
T ss_pred             cCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence            88866654 333345567888888888888888888888888888888876655 6788888888899999999999999


Q ss_pred             ccHHhhccCCCCceeeccCC
Q 036017          262 LPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       262 ~~~~~~~~~~L~~L~l~~c~  281 (283)
                      +|..++.|+.|+.|.+..+.
T Consensus       331 VPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             CchhhhhhHHHHHhcccccc
Confidence            99999999999999887653

>PLN03210 Resistant to P

Probab=99.88  E-value=3.4e-21  Score=182.54  Aligned_cols=240  Identities=28%  Similarity=0.382  Sum_probs=133.3

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CCccCCCCCCCcceEEecCCC-CcccchhhhhccC
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LRTLPTNLSTDKLVVLNLPCS-NVELLWEEKKEAF   80 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~l~~~~   80 (283)
                      +|++|++.++.+.         .++..+..++ +|++|+++++. +..+|....+++|+.|++++| .+..+|..+..+.
T Consensus       612 ~L~~L~L~~s~l~---------~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~  681 (1153)
T PLN03210        612 NLVKLQMQGSKLE---------KLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLN  681 (1153)
T ss_pred             CCcEEECcCcccc---------ccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccC
Confidence            4555555555444         4555566677 77888877665 456665446778888888776 4556777777788


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHh-------------
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFI-------------  147 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------  147 (283)
                      +|+.|++.+|.....+|...++++|+.|.+++|.....+|..   ..+|+.|+++++.+. .+|..+             
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~  757 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEM  757 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccccccccccc
Confidence            888888887766666664446777777777776544433321   223444444444321 122110             


Q ss_pred             ----------------hcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecC--
Q 036017          148 ----------------SLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL--  209 (283)
Q Consensus       148 ----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~--  209 (283)
                                      ...+++|+.|++++|.....+|..++++++|+.|++.+|...+.+|... .+++|+.|++++  
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                            0022455556666555555555556666666666666655544444322 344555555554  


Q ss_pred             -------------------CCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017          210 -------------------TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       210 -------------------~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  257 (283)
                                         |.+..+|..+..+++|+.|++.+|+.+..++.....+++|+.+++++|
T Consensus       837 ~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        837 RLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence                               444444444444555555555555444444444444444444444443

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=1.7e-22  Score=161.89  Aligned_cols=117  Identities=20%  Similarity=0.421  Sum_probs=98.1

Q ss_pred             cCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017          163 KRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN  242 (283)
Q Consensus       163 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~  242 (283)
                      +....++..++.+++|..|+++. ++...+|..++.+..|+.++++.|.+..+|........++.+..++ .+++.++..
T Consensus       422 n~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~  499 (565)
T KOG0472|consen  422 NKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPS  499 (565)
T ss_pred             CccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChH
Confidence            34456667788889999999987 6667788888888889999999999999998888877777777666 455556554


Q ss_pred             -cCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          243 -LGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       243 -~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                       +..+.+|.+||+.+|.+..+|..+++|.+|++|++.|++
T Consensus       500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence             888999999999999999999999999999999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=4.4e-23  Score=165.31  Aligned_cols=260  Identities=27%  Similarity=0.334  Sum_probs=218.7

Q ss_pred             ceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCc
Q 036017            4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKL   82 (283)
Q Consensus         4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L   82 (283)
                      +..+.+++|.+.         .+..-+.+++ .+..|.++++...++|+.. .+..+..++++.+++..+|..+.....+
T Consensus        47 l~~lils~N~l~---------~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLE---------VLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL  116 (565)
T ss_pred             hhhhhhccCchh---------hccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence            445566666655         4556677788 8999999999998888777 7888999999999999999989999999


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCC
Q 036017           83 KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHC  162 (283)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (283)
                      +.++.+.+......+.++++..++.++..+|+ +...|..+..+.++..+++.+|.... .|+... .|+.|+++|...|
T Consensus       117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNSN  193 (565)
T ss_pred             hhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccchh
Confidence            99999998866556688999999999988765 56778888888899999999988655 555554 6999999999874


Q ss_pred             cCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh-hcCCCccEEecccccCCCCCcc
Q 036017          163 KRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPD  241 (283)
Q Consensus       163 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~  241 (283)
                       ..+.+|+.++++.+|.-|++..|++.. +| .|.+|..|..++++.|.+..+|+.. .+++++..||+-.| .++..|+
T Consensus       194 -~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd  269 (565)
T KOG0472|consen  194 -LLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD  269 (565)
T ss_pred             -hhhcCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCch
Confidence             477889999999999999999977663 44 7889999999999999999888876 48999999999984 5778999


Q ss_pred             ccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          242 NLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       242 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      .++.+.+|.+||+++|.|+.+|..++++ .|+.|.+.|+|
T Consensus       270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            9999999999999999999999999999 89999888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=5.6e-21  Score=167.24  Aligned_cols=244  Identities=23%  Similarity=0.278  Sum_probs=179.1

Q ss_pred             cccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCC-CCCCCCcEEee
Q 036017           33 LPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLERMYL  110 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l  110 (283)
                      .|.+|++++++.+.+..+|.+. .+.+|+.+.+..|.+.+++..+....+|+.+.+..|+ +..++.+ ..+..|++|++
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence            4557888888888888888666 7888888888888888888777777888888888877 5555544 44888888888


Q ss_pred             eCCCCCCcchhh-ccCCC-CCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017          111 LNCTNLPFISSS-IENLN-NLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       111 ~~~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  188 (283)
                      ..|.. ..+|.. +.... .++.++.+.+.+.. .|..-...++.|+.|++.+|.+....-+.+.+..+|+.|++++|.+
T Consensus       318 ~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  318 QSNNL-PSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             hhccc-cccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            87654 444432 22222 24455555544322 3321111456788999999888777767788899999999999665


Q ss_pred             CCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccHHh
Q 036017          189 LESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPSSI  266 (283)
Q Consensus       189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~~  266 (283)
                      ...-...+.++..|+.|++++|.++.+|..+..++.|++|...+|. +..+| .+.+++.|+.+|++.|.++  .++...
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            5433366778899999999999999999889999999999988854 55566 7788999999999999988  333322


Q ss_pred             hccCCCCceeeccCCC
Q 036017          267 ADLKQVDGLSFYGCRG  282 (283)
Q Consensus       267 ~~~~~L~~L~l~~c~~  282 (283)
                       .-|+|++||++|+.+
T Consensus       474 -p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 -PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -CCcccceeeccCCcc
Confidence             228999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=7.3e-18  Score=151.23  Aligned_cols=243  Identities=18%  Similarity=0.266  Sum_probs=180.7

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCc
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKL   82 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L   82 (283)
                      +...|+++++.++         .+|..+   |++++.|++++|.+..+|... ..+|+.|++++|.+..+|..+  ..+|
T Consensus       179 ~~~~L~L~~~~Lt---------sLP~~I---p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l--~~~L  243 (754)
T PRK15370        179 NKTELRLKILGLT---------TIPACI---PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL--PDTI  243 (754)
T ss_pred             CceEEEeCCCCcC---------cCCccc---ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh--hccc
Confidence            4567788776666         455433   448999999999998887655 368999999999999887655  3579


Q ss_pred             cEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           83 KSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        83 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      +.|++++|... .+| .+  ..+|+.|++++|.. ..+|..+  .++|+.|++++|.+.. +|..+   .++|+.|++++
T Consensus       244 ~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L-~~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---p~sL~~L~Ls~  313 (754)
T PRK15370        244 QEMELSINRIT-ELPERL--PSALQSLDLFHNKI-SCLPENL--PEELRYLSVYDNSIRT-LPAHL---PSGITHLNVQS  313 (754)
T ss_pred             cEEECcCCccC-cCChhH--hCCCCEEECcCCcc-Ccccccc--CCCCcEEECCCCcccc-Ccccc---hhhHHHHHhcC
Confidence            99999998744 555 23  25799999998754 3566544  2589999999998754 55443   25789999998


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcc
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD  241 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~  241 (283)
                      |.+. .+|..+  .++|+.|++++|.+.. +|..+  .++|+.|++++|.++.+|..+  .+.|+.|++++|.. ..+|.
T Consensus       314 N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~L-t~LP~  384 (754)
T PRK15370        314 NSLT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNAL-TNLPE  384 (754)
T ss_pred             Cccc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcC-CCCCH
Confidence            8754 344333  3689999999987664 55444  368999999999999888765  36899999999764 45666


Q ss_pred             ccCCCcccceeecCCcccccccHHh----hccCCCCceeeccCC
Q 036017          242 NLGSLRSLKRLHTGKSAISQLPSSI----ADLKQVDGLSFYGCR  281 (283)
Q Consensus       242 ~~~~l~~L~~L~l~~~~i~~~~~~~----~~~~~L~~L~l~~c~  281 (283)
                      .+.  ..|+.|++++|.++.+|..+    ..++.+..+++.+++
T Consensus       385 ~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        385 NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            554  37999999999999777654    345888999998875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=1.7e-17  Score=148.36  Aligned_cols=214  Identities=21%  Similarity=0.225  Sum_probs=127.6

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      +|++|++++|.+..+|..  .++|+.|++++|.+..++..   ..+|+.|++.+|. ...++.  ..++|+.|++++|..
T Consensus       243 ~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N~L  314 (788)
T PRK15387        243 ELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQL  314 (788)
T ss_pred             CCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCCcc
Confidence            555555555555444432  24455555555555444331   2345555665554 223332  235667777766543


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      . .+|.   ...+|+.|++++|.+.. +|.    .+.+|+.|++++|++. .+|..   ..+|+.|++++|.+. .+|..
T Consensus       315 ~-~Lp~---lp~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l  380 (788)
T PRK15387        315 A-SLPA---LPSELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL  380 (788)
T ss_pred             c-cCCC---CcccccccccccCcccc-ccc----cccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc
Confidence            2 2332   12245566666665432 442    2246778888776644 33322   346677777775554 34432


Q ss_pred             hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCce
Q 036017          196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGL  275 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L  275 (283)
                         ..+|+.|++++|.++.+|..   .++|+.|++++|.. ..+|..   ..+|+.|++++|.++.+|..+.++++|+.|
T Consensus       381 ---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L  450 (788)
T PRK15387        381 ---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTV  450 (788)
T ss_pred             ---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeE
Confidence               35688888888888877753   35788889888764 446543   246788899999999888888889999999


Q ss_pred             eeccCC
Q 036017          276 SFYGCR  281 (283)
Q Consensus       276 ~l~~c~  281 (283)
                      ++++|+
T Consensus       451 dLs~N~  456 (788)
T PRK15387        451 NLEGNP  456 (788)
T ss_pred             ECCCCC
Confidence            998875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.3e-18  Score=144.14  Aligned_cols=267  Identities=18%  Similarity=0.173  Sum_probs=184.6

Q ss_pred             eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc-------c
Q 036017            6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL-------L   72 (283)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~-------~   72 (283)
                      .|+++.+.+++.       .+...+..++ +|+.|+++++.+..     ++... ..+.++.++++++.+..       +
T Consensus         2 ~l~L~~~~l~~~-------~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~   73 (319)
T cd00116           2 QLSLKGELLKTE-------RATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL   73 (319)
T ss_pred             ccccccCccccc-------chHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence            466666666532       4455667777 89999999998722     33333 66789999998876652       2


Q ss_pred             hhhhhccCCccEEEccCCCCCCCCC-CCCCC---CCCcEEeeeCCCCCC----cchhhccCC-CCCcEEEecCCCCcCC-
Q 036017           73 WEEKKEAFKLKSVDLCNSQNLTRMP-DLSET---PNLERMYLLNCTNLP----FISSSIENL-NNLSMLRLEGCKILGP-  142 (283)
Q Consensus        73 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~-  142 (283)
                      +..+..+++|+.|+++++......+ .+..+   ++|+.|++++|....    .+...+..+ ++|+++++++|.+.+. 
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            3456678899999999887653322 22222   569999999987553    233345666 8999999999987632 


Q ss_pred             ---ChhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCC
Q 036017          143 ---FPAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTA  211 (283)
Q Consensus       143 ---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~  211 (283)
                         +...+. .+++|+.|++++|.+.+.    ++..+...++|++|++++|.+.+.    +...+..+++|++|++++|.
T Consensus       154 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         154 CEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence               223343 667899999999876532    333455667999999999877643    33455678899999999998


Q ss_pred             ccc--cchhhhc----CCCccEEecccccCC----CCCccccCCCcccceeecCCccccc-----ccHHhhcc-CCCCce
Q 036017          212 IKE--LPSSVEH----LEGLKELRMEYCYKL----SKLPDNLGSLRSLKRLHTGKSAISQ-----LPSSIADL-KQVDGL  275 (283)
Q Consensus       212 l~~--~~~~~~~----~~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~~-~~L~~L  275 (283)
                      ++.  +......    .+.|+.|++++|...    ..+...+..+++|+.+++++|.++.     +...+... +.++++
T Consensus       233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~  312 (319)
T cd00116         233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL  312 (319)
T ss_pred             CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence            873  2222222    478999999998654    2334456667899999999999982     33344444 688999


Q ss_pred             eeccCC
Q 036017          276 SFYGCR  281 (283)
Q Consensus       276 ~l~~c~  281 (283)
                      ++.+.+
T Consensus       313 ~~~~~~  318 (319)
T cd00116         313 WVKDDS  318 (319)
T ss_pred             ccCCCC
Confidence            887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.1e-17  Score=138.77  Aligned_cols=241  Identities=21%  Similarity=0.186  Sum_probs=169.9

Q ss_pred             EEecCCCCC--ccCCCC-CCCcceEEecCCCCcc-----cchhhhhccCCccEEEccCCCCCC--C----C-CCCCCCCC
Q 036017           40 LHWHGYPLR--TLPTNL-STDKLVVLNLPCSNVE-----LLWEEKKEAFKLKSVDLCNSQNLT--R----M-PDLSETPN  104 (283)
Q Consensus        40 L~l~~~~~~--~~~~~~-~~~~L~~l~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~--~----~-~~~~~~~~  104 (283)
                      |++..+.+.  .....+ .+..|+.++++++.+.     .++..+...++++.+++.++....  .    + ..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            445555542  222222 5677999999999884     355556677889999998876442  1    1 13566889


Q ss_pred             CcEEeeeCCCCCCcchhhccCC---CCCcEEEecCCCCcCC----ChhHhhcCC-CccCEEeccCCcCcc----cchhhh
Q 036017          105 LERMYLLNCTNLPFISSSIENL---NNLSMLRLEGCKILGP----FPAFISLSL-TNLEVLDLAHCKRLN----RLSASI  172 (283)
Q Consensus       105 L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~~l  172 (283)
                      |+.|++++|......+..+..+   ++|++|++++|.+.+.    +...+. .+ ++|+.|++++|.+..    .+...+
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999987765444444444   4599999999987632    122333 55 899999999998763    234456


Q ss_pred             cCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCCCcccc
Q 036017          173 CKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSKLPDNL  243 (283)
Q Consensus       173 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  243 (283)
                      ..+++|++|++++|.+.+.    ++..+...++|+++++++|.++     .+...+..+++|+.|++++|.........+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            6788999999999887753    2233455679999999999886     344556788999999999987553111111


Q ss_pred             -----CCCcccceeecCCcccc-----cccHHhhccCCCCceeeccCC
Q 036017          244 -----GSLRSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       244 -----~~l~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c~  281 (283)
                           ...+.|+.|++++|.++     .+...+..+++|+++++++|.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence                 12479999999999986     445566777899999998874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.70  E-value=5.8e-19  Score=154.82  Aligned_cols=244  Identities=23%  Similarity=0.273  Sum_probs=193.9

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY  109 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  109 (283)
                      ..-| +++.|....|.+.+....+--.+|++++++.+++..+|+++..+.+|+.+.+.+|.. ..++ .+....+|+.+.
T Consensus       216 ~~g~-~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  216 ISGP-SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLS  293 (1081)
T ss_pred             ecCc-chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHH
Confidence            3345 777777777777654444445789999999999999998889999999999998875 3444 566778888888


Q ss_pred             eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCC-CccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017          110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSL-TNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  188 (283)
                      ...|. +..+|.....+..|++|++..|.+. .+|..+..-. .+++.+..+.++........=...+.|+.|++.+|.+
T Consensus       294 ~~~ne-l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  294 AAYNE-LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhh-hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            88764 4667777788999999999998864 4665443122 2367777776654333211122466799999999999


Q ss_pred             CCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhh
Q 036017          189 LESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIA  267 (283)
Q Consensus       189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~  267 (283)
                      ++..-+.+.+..+|+.|++++|++..+|+. +.+++.|++|+++||. ++.+|+.+..+..|++|...+|.+..+| .+.
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~  449 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA  449 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence            988778889999999999999999999987 5899999999999964 6778899999999999999999999999 688


Q ss_pred             ccCCCCceeeccC
Q 036017          268 DLKQVDGLSFYGC  280 (283)
Q Consensus       268 ~~~~L~~L~l~~c  280 (283)
                      ++++|+.+|++.+
T Consensus       450 ~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCN  462 (1081)
T ss_pred             hcCcceEEecccc
Confidence            9999999999866

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=1.7e-15  Score=135.66  Aligned_cols=217  Identities=21%  Similarity=0.208  Sum_probs=161.0

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|++++|.++         .+|.    .|.+|+.|++.+|.+..++..  ...|+.|++++|.+..+|..   .++
T Consensus       242 ~~Lk~LdLs~N~Lt---------sLP~----lp~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~  303 (788)
T PRK15387        242 PELRTLEVSGNQLT---------SLPV----LPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPG  303 (788)
T ss_pred             CCCcEEEecCCccC---------cccC----cccccceeeccCCchhhhhhc--hhhcCEEECcCCcccccccc---ccc
Confidence            56788888877766         3443    233899999999998877764  46788999999999988753   578


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      |+.|++++|... .++.+  ..+|+.|++++|.. ..+|.   ...+|++|++++|.+.. +|.    .+++|+.|++++
T Consensus       304 L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N~L-~~LP~---lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~  371 (788)
T PRK15387        304 LQELSVSDNQLA-SLPAL--PSELCKLWAYNNQL-TSLPT---LPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYN  371 (788)
T ss_pred             cceeECCCCccc-cCCCC--cccccccccccCcc-ccccc---cccccceEecCCCccCC-CCC----CCcccceehhhc
Confidence            999999998743 45432  24688888888754 34442   12479999999988754 553    345788899988


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcc
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD  241 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~  241 (283)
                      |.+. .+|..   ..+|+.|++++|.+.. +|..   .++|+.|++++|.++.+|..   ..+|+.|++++|. ++.+|.
T Consensus       372 N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~  439 (788)
T PRK15387        372 NRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPE  439 (788)
T ss_pred             cccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccCh
Confidence            7654 34432   3578999999977663 4432   36799999999999988754   3467889998865 557888


Q ss_pred             ccCCCcccceeecCCcccc
Q 036017          242 NLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       242 ~~~~l~~L~~L~l~~~~i~  260 (283)
                      .+..+++|+.+++++|.++
T Consensus       440 sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        440 SLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             HHhhccCCCeEECCCCCCC
Confidence            8889999999999999988

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=1.2e-15  Score=137.00  Aligned_cols=225  Identities=18%  Similarity=0.282  Sum_probs=167.2

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|+.|++++|.++         .+|..+  .+ +|++|++++|.+..+|... .+.|+.|++++|.+..+|..+.  .+
T Consensus       199 ~~L~~L~Ls~N~Lt---------sLP~~l--~~-nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~  263 (754)
T PRK15370        199 EQITTLILDNNELK---------SLPENL--QG-NIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SA  263 (754)
T ss_pred             cCCcEEEecCCCCC---------cCChhh--cc-CCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CC
Confidence            46889999999887         455543  25 8999999999998887654 3589999999999998887653  58


Q ss_pred             ccEEEccCCCCCCCCCC-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017           82 LKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA  160 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (283)
                      |+.|++++|... .+|. +  .++|+.|++++|.+. .+|..+  .++|+.|++++|.+.. +|..+   +++|+.|+++
T Consensus       264 L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls  333 (754)
T PRK15370        264 LQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTA-LPETL---PPGLKTLEAG  333 (754)
T ss_pred             CCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcccc-CCccc---cccceecccc
Confidence            999999988744 4553 3  358999999997643 444332  2468889999988654 55443   3689999999


Q ss_pred             CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCc
Q 036017          161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP  240 (283)
Q Consensus       161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~  240 (283)
                      +|.+.. +|..+  .++|+.|++++|.+. .+|..+  .++|+.|++++|.++.+|..+.  ..|+.|++++|... .+|
T Consensus       334 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP  404 (754)
T PRK15370        334 ENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-RLP  404 (754)
T ss_pred             CCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCc
Confidence            987543 45444  368999999998765 355444  3689999999999998887654  36889999987654 555


Q ss_pred             ccc----CCCcccceeecCCcccc
Q 036017          241 DNL----GSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       241 ~~~----~~l~~L~~L~l~~~~i~  260 (283)
                      ..+    ..++.+..+++.+|.++
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCCcc
Confidence            543    34577889999999886

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-17  Score=118.61  Aligned_cols=170  Identities=20%  Similarity=0.270  Sum_probs=126.6

Q ss_pred             CccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCC
Q 036017           48 RTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLN  127 (283)
Q Consensus        48 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  127 (283)
                      ..++..+++.+++.+.+++|.+..+|..++.+.+|+.|++.+|++....+.+..+++|+.|+++-+ .....|..++.+|
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p  102 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP  102 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence            344455567777777778888777777777777888888877774443346777888888887764 3456777888888


Q ss_pred             CCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017          128 NLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID  206 (283)
Q Consensus       128 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  206 (283)
                      .|++|++.+|.+.. .+|..+. .++.|+.|++++|.+ +.+|..++.+.+|+.|.+..+... ++|..++.+..|+.++
T Consensus       103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence            88888888877653 4676666 788888888888653 566777888888888888886665 3777888888888888


Q ss_pred             ecCCCccccchhhhc
Q 036017          207 LRLTAIKELPSSVEH  221 (283)
Q Consensus       207 l~~~~l~~~~~~~~~  221 (283)
                      +.+|.++.+|..++.
T Consensus       180 iqgnrl~vlppel~~  194 (264)
T KOG0617|consen  180 IQGNRLTVLPPELAN  194 (264)
T ss_pred             cccceeeecChhhhh
Confidence            888888877766554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=6e-17  Score=116.09  Aligned_cols=164  Identities=23%  Similarity=0.293  Sum_probs=107.5

Q ss_pred             hhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017           76 KKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE  155 (283)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (283)
                      +..+.+++.|.+++|+....-|.++.+.+|+.|++++++ +..+|..++.+++|+.|+++.|.+. ..|..+. .+|-|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhh-cCccccC-CCchhh
Confidence            445667777777777744444467777777777777654 4567777777777777777766543 3666666 777777


Q ss_pred             EEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017          156 VLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       156 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      .||+++|+..+ .+|..+-.+..|+-|+++.+.+. .+|+..+++.+|+.+.+.+|.+.++|..++.+..|++|.+.+|+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            77777766543 45555555666777777664443 35566667777777777777777777777777777777777654


Q ss_pred             CCCCCccccC
Q 036017          235 KLSKLPDNLG  244 (283)
Q Consensus       235 ~~~~l~~~~~  244 (283)
                      . +-+|..++
T Consensus       185 l-~vlppel~  193 (264)
T KOG0617|consen  185 L-TVLPPELA  193 (264)
T ss_pred             e-eecChhhh
Confidence            3 33444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.55  E-value=3.6e-16  Score=125.60  Aligned_cols=250  Identities=18%  Similarity=0.192  Sum_probs=170.7

Q ss_pred             CCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCC
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNL  105 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L  105 (283)
                      .++|.....|.+..|++..+|+..  .+++|+.|++++|+|..+ ++.+.+++.+..|-+.++..++.++  .|+.+.+|
T Consensus        63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            456778999999999999998865  899999999999999965 5678889999888888855577776  58889999


Q ss_pred             cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc------------chhhhc
Q 036017          106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR------------LSASIC  173 (283)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~l~  173 (283)
                      +.|.+.-+...-.....++.++++..|.+.+|.+.. ++....+.+..++.+.+..+.+...            .+...+
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            998887665444555678889999999999886533 4443333566677776666553210            010111


Q ss_pred             CCCC----------------------CCeE---eecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccchh-hhcCCCcc
Q 036017          174 KLKS----------------------LSWL---RLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSS-VEHLEGLK  226 (283)
Q Consensus       174 ~~~~----------------------L~~L---~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~  226 (283)
                      +.+-                      ++.+   -.+.|......| .-|.++++|+++++++|+++.+.+. +.....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            1111                      1111   111122222233 3467788899999999988866554 57778888


Q ss_pred             EEecccccCCCCCccccCCCcccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017          227 ELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       227 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~  281 (283)
                      +|.+.+|.....-...+..+.+|+.|++.+|+|+.+ |..+.....|.+|++..++
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            888888654432234467788888888888888844 4566677778888776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=3.1e-13  Score=107.31  Aligned_cols=180  Identities=22%  Similarity=0.260  Sum_probs=104.4

Q ss_pred             CCCCCcEEeeeCCCCCCcch----hhccCCCCCcEEEecCCCCcCCChh-------------HhhcCCCccCEEeccCCc
Q 036017          101 ETPNLERMYLLNCTNLPFIS----SSIENLNNLSMLRLEGCKILGPFPA-------------FISLSLTNLEVLDLAHCK  163 (283)
Q Consensus       101 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~  163 (283)
                      .+|+|+.++++.|.+-...+    ..+.++..|++|.+++|.+...-..             .++ ..+.|+.+...+|+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~-~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAA-SKPKLRVFICGRNR  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccC-CCcceEEEEeeccc
Confidence            44556666665554433222    2234555666666665544321111             111 45667777777766


Q ss_pred             Cccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEec
Q 036017          164 RLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRM  230 (283)
Q Consensus       164 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l  230 (283)
                      +...    +...+...+.|+.+.+..|.+...    +...+..+++|++||+.+|.++     .+...+..+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            5332    333455667777777777665432    2345667778888888877776     34455667777888888


Q ss_pred             ccccCCCCCc----ccc-CCCcccceeecCCcccc-----cccHHhhccCCCCceeeccCC
Q 036017          231 EYCYKLSKLP----DNL-GSLRSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       231 ~~~~~~~~l~----~~~-~~l~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      +.|..-..-.    ..+ ...|+|+++.+.+|.|+     .+..++...|.|..|++.+|.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            8776543211    111 23577888888888776     333455567777777777764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=4.3e-15  Score=119.49  Aligned_cols=244  Identities=18%  Similarity=0.123  Sum_probs=121.8

Q ss_pred             eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCC-CCcccchhh-hhccCC
Q 036017            6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPC-SNVELLWEE-KKEAFK   81 (283)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~-~~~~~~~~~-l~~~~~   81 (283)
                      .+.+..|.++.        ..+.+++.++ +|++|++++|.++.+.+..  ++..+..+-+-+ |+|+.+++. +.++..
T Consensus        71 eirLdqN~I~~--------iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   71 EIRLDQNQISS--------IPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             EEEeccCCccc--------CChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            46666777663        3345788899 9999999999987776544  777777766655 788877643 444555


Q ss_pred             ccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC---------------------
Q 036017           82 LKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK---------------------  138 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------  138 (283)
                      ++.|.+.-+. ...+.  .+..+++|..|.+..+......-..+..+.+++.+.+..|.                     
T Consensus       142 lqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  142 LQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            5555544333 22222  23444444444443322111111112222222222222111                     


Q ss_pred             ---------------CcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCeEeecCCCCCCCCchhhhcCCCC
Q 036017          139 ---------------ILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSWLRLYNCSKLESFPGILENMARL  202 (283)
Q Consensus       139 ---------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  202 (283)
                                     +...-+.-+.....++.+--.+.+.....-| ..++.+++|+.|++++|+++.....+|.+..++
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence                           0000000000011111111111111111111 225556666666666666665555666666666


Q ss_pred             cEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017          203 EYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI  259 (283)
Q Consensus       203 ~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i  259 (283)
                      +.|.+..|.+..+... +..+..|++|++.+|+...-.|-.|..+.+|.+|.+-.|.+
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            6666666666644333 45666666666666655555555566666666666555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.8e-13  Score=111.55  Aligned_cols=202  Identities=19%  Similarity=0.170  Sum_probs=127.7

Q ss_pred             hccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCC
Q 036017           77 KEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLT  152 (283)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  152 (283)
                      .++.+|+.+.+.++.......  ....|+++++|+++.|-+...  +...+..+|+|+.|+++.|.+.-......-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            356777777777665332221  355688888888887644432  3345678888888888887765433333322567


Q ss_pred             ccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch--hhhcCCCccEEe
Q 036017          153 NLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELR  229 (283)
Q Consensus       153 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~  229 (283)
                      +|+.|.++.|.+.. .+...+..+|+|++|++..|...........-+..|+.||+++|.+..++.  ..+.++.|.+|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88888888887653 333345568888888888775332222333455678888888888776663  357788888888


Q ss_pred             cccccCCC-CCccc-----cCCCcccceeecCCccccccc--HHhhccCCCCceeec
Q 036017          230 MEYCYKLS-KLPDN-----LGSLRSLKRLHTGKSAISQLP--SSIADLKQVDGLSFY  278 (283)
Q Consensus       230 l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~  278 (283)
                      ++.|...+ ..|+.     ...+++|+.|+++.|.|.+++  ..+...++|+.|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            88765442 22332     345678888888888886543  234455556655543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.35  E-value=3.7e-13  Score=106.86  Aligned_cols=228  Identities=18%  Similarity=0.130  Sum_probs=135.6

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC----ccCC--------CCCCCcceEEecCCCCc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR----TLPT--------NLSTDKLVVLNLPCSNV   69 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~--------~~~~~~L~~l~l~~~~~   69 (283)
                      ..+.++++++|.|...    .+..+...+.+.+ .|+..++++.-.+    .+|.        ..++++|+.+++++|.+
T Consensus        30 ~s~~~l~lsgnt~G~E----Aa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTE----AARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             CceEEEeccCCchhHH----HHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            4566777777766532    1223344566667 7777777765432    2221        11567888888888876


Q ss_pred             c-----cchhhhhccCCccEEEccCCCCCCCCC--------------CCCCCCCCcEEeeeCCCCCC----cchhhccCC
Q 036017           70 E-----LLWEEKKEAFKLKSVDLCNSQNLTRMP--------------DLSETPNLERMYLLNCTNLP----FISSSIENL  126 (283)
Q Consensus        70 ~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~  126 (283)
                      .     .+...+..+..|++|.+.+|..-..-.              ..+.-++|+.+..++|..-.    .+...+..+
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            6     233445567778888887776322210              13445677777777765433    233455667


Q ss_pred             CCCcEEEecCCCCcCCCh----hHhhcCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCCCc----h
Q 036017          127 NNLSMLRLEGCKILGPFP----AFISLSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLESFP----G  194 (283)
Q Consensus       127 ~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~  194 (283)
                      +.|+.+.+..|.+...-.    ..+. ++++|+.||+.+|.+..    .+...+..+++|+++++++|.+...-.    .
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            778888777776543211    1223 67788888888776542    234456667778888888777654322    1


Q ss_pred             hhh-cCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccC
Q 036017          195 ILE-NMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       195 ~~~-~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      .+. ..++|+++.+.+|.++     .+.......+.|..|++++|..
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            122 3567777777777776     1222334567777777777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=4.3e-14  Score=114.59  Aligned_cols=274  Identities=19%  Similarity=0.240  Sum_probs=181.2

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCC-Cc--cCCCC-CCCcceEEecCCC-Ccccch-h-h
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPL-RT--LPTNL-STDKLVVLNLPCS-NVELLW-E-E   75 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~-~~~~L~~l~l~~~-~~~~~~-~-~   75 (283)
                      .||.|+++++.-.++      ..+-.+...+| +++.|.+.+|.. ++  +.... .+++|+++++..| .++... . -
T Consensus       139 ~lk~LSlrG~r~v~~------sslrt~~~~Cp-nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGD------SSLRTFASNCP-NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             ccccccccccccCCc------chhhHHhhhCC-chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            467777777765543      25556677788 888888888773 11  11122 6788888888874 454321 2 2


Q ss_pred             hhccCCccEEEccCCCCCCC--CC-CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCCh-hHhhc
Q 036017           76 KKEAFKLKSVDLCNSQNLTR--MP-DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFP-AFISL  149 (283)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  149 (283)
                      ...+++|++++++.|..+..  +. ....+..++.+...+|.....  +...-..++-+..+++..|...++.. -.+..
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            34578888888887765443  22 234566677776666654432  22233455556666766665433322 23333


Q ss_pred             CCCccCEEeccCCcCcccchh-hh-cCCCCCCeEeecCCCCCCC--CchhhhcCCCCcEEeecCCCcc---ccchhhhcC
Q 036017          150 SLTNLEVLDLAHCKRLNRLSA-SI-CKLKSLSWLRLYNCSKLES--FPGILENMARLEYIDLRLTAIK---ELPSSVEHL  222 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~-~l-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~---~~~~~~~~~  222 (283)
                      .+..|+.++.+++...+..+- .+ .++.+|+.+.+.+|...+.  +...-.+++.|+.+++..+...   .+.....++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            577899999988866544332 33 3688999999999885443  2233456788999999988765   355556789


Q ss_pred             CCccEEecccccCCCCC-----ccccCCCcccceeecCCcccc--cccHHhhccCCCCceeeccCCCC
Q 036017          223 EGLKELRMEYCYKLSKL-----PDNLGSLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCRGL  283 (283)
Q Consensus       223 ~~L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~~l  283 (283)
                      +.|+.+.+++|..+++-     ......+.++..+.++++..+  ..-..+..|++|+.+++.+|+.+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            99999999999877543     344567788999999998755  55567789999999999999753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.27  E-value=1.1e-12  Score=102.45  Aligned_cols=198  Identities=19%  Similarity=0.169  Sum_probs=131.4

Q ss_pred             hhhhhccCCccEEEccCCCCCCCCCC-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC---CcCCChhHhh
Q 036017           73 WEEKKEAFKLKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK---ILGPFPAFIS  148 (283)
Q Consensus        73 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~  148 (283)
                      +..+..+.+|+.+.++.|. ...+.. ...-|.|+++.+.+.... ..+.- -....  ..+..+..   ..+.....+.
T Consensus       207 ~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l-~pe~~--~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQ-DVPSL-LPETI--LADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             ccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccc-ccccc-cchhh--hcCccCCCCCccCCceEEecc
Confidence            3345567788888888876 333332 344578888888764322 11110 00111  11222111   1122223333


Q ss_pred             cCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEE
Q 036017          149 LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKEL  228 (283)
Q Consensus       149 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L  228 (283)
                       .|+.|+.+|+++|. +..+.++..-.|.++.|+++.|.+...  ..+..+++|+.||+++|.++.+..+-..+.+.++|
T Consensus       282 -TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 -TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             -hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence             67789999999876 445555667788999999998777643  23677889999999999998776666788889999


Q ss_pred             ecccccCCCCCccccCCCcccceeecCCcccccc--cHHhhccCCCCceeeccCC
Q 036017          229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL--PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~c~  281 (283)
                      .+++|. +..+ +.+.++-+|..||+++|+|..+  .+.++++|+|+.+.+.++|
T Consensus       358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            999854 3333 4567788899999999998833  3568899999999888876

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.2e-12  Score=103.74  Aligned_cols=204  Identities=19%  Similarity=0.202  Sum_probs=144.7

Q ss_pred             CCcccCceEEEecCCCCCccCC--C-CCCCcceEEecCCCCccc---chhhhhccCCccEEEccCCCCCCCCCC--CCCC
Q 036017           31 DYLPEELRYLHWHGYPLRTLPT--N-LSTDKLVVLNLPCSNVEL---LWEEKKEAFKLKSVDLCNSQNLTRMPD--LSET  102 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~l~l~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~  102 (283)
                      .++. +|+.+.+.++.++..+.  . ..|++++.|+++.|-+..   +...+..+|+|+.|+++.|........  -..+
T Consensus       118 sn~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHH-hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3456 89999999998766553  2 279999999999997763   334456689999999999875544443  2468


Q ss_pred             CCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccc-hhhhcCCCCCCe
Q 036017          103 PNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRL-SASICKLKSLSW  180 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~  180 (283)
                      ++|+.|.++.|.+.- .+...+..+|++++|++.+|.....-..... .++.|+.|++++|.+.... ...++.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhh
Confidence            899999999987653 2444567899999999998852211111111 4578999999998876542 234677889999


Q ss_pred             EeecCCCCCCC-Cch-----hhhcCCCCcEEeecCCCccccch--hhhcCCCccEEecccccCC
Q 036017          181 LRLYNCSKLES-FPG-----ILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       181 L~l~~~~~~~~-~~~-----~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~  236 (283)
                      |+++.|.+..- .++     ....+++|++|++..|.+..|++  .+..+++|+.|.+.++...
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            99988776542 222     13467889999999999986654  3567778888887766544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.4e-13  Score=112.83  Aligned_cols=211  Identities=22%  Similarity=0.244  Sum_probs=152.7

Q ss_pred             EEEecCCCCCccCCCC---CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           39 YLHWHGYPLRTLPTNL---STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      .|.+++-.+..+|...   .+..-...+++.|.+..+|..+..+..|+.+.++.|.+-....++.++..|+.++++.|+ 
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-
Confidence            4555555555555433   556666778888889888887777888888888877644333478888888899988865 


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      ...+|..+..++ |++|-++.|++ +.+|..+. ..++|..||.+.|.+ ..++..++++.+|+.|.+..|.+.+ +|..
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~-lp~E  207 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNNKL-TSLPEEIG-LLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLED-LPEE  207 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecCcc-ccCCcccc-cchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhh-CCHH
Confidence            456676766665 78888888875 44787777 788888899888764 4556677888888888888866654 5666


Q ss_pred             hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcccc---CCCcccceeecCCc
Q 036017          196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL---GSLRSLKRLHTGKS  257 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---~~l~~L~~L~l~~~  257 (283)
                      +..++ |..||++.|++..+|..+.+++.|++|-|.+|+... .|..+   ++..-.++|++..|
T Consensus       208 l~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  208 LCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence            66444 888889889888888888888889999888877554 33332   34455667776666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=1.6e-12  Score=109.48  Aligned_cols=211  Identities=23%  Similarity=0.329  Sum_probs=157.1

Q ss_pred             EEecCCCCcccchhhhhc--cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           61 VLNLPCSNVELLWEEKKE--AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        61 ~l~l~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      .+.|++-+++.+|....+  +..-...+++.|. ...+| .+..|..|+.+.+..| ....+|..+..+..|+.++++.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence            345555566666643333  3444556666666 33444 5666777888888764 34677778888889999999988


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS  217 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~  217 (283)
                      ++.. +|..++ .++ |+.|.+++|+ .+.+|..++..++|.+|+.+.|.+.. ++..++++.+|+.+.+..|++..+|.
T Consensus       132 qlS~-lp~~lC-~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp~  206 (722)
T KOG0532|consen  132 QLSH-LPDGLC-DLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLPE  206 (722)
T ss_pred             hhhc-CChhhh-cCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCCH
Confidence            8654 777775 555 8888888766 56777788888899999998866654 66778888999999999999999998


Q ss_pred             hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHh---hccCCCCceeeccC
Q 036017          218 SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI---ADLKQVDGLSFYGC  280 (283)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~---~~~~~L~~L~l~~c  280 (283)
                      .+..++ |..||+++ +.+..+|-.+.+|.+||+|.|.+|.++.-|..+   +...-.|+|++..|
T Consensus       207 El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  207 ELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HHhCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            888666 88899986 456778888999999999999999998766544   44556777777776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=9.4e-11  Score=87.03  Aligned_cols=106  Identities=32%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCCcceEEecCCCCcccchhhhh-ccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhc-cCCCCCcEE
Q 036017           55 STDKLVVLNLPCSNVELLWEEKK-EAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSML  132 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L  132 (283)
                      +..+++.|+++++.+..+.. +. .+.+|+.|++++|. +..++.+..+++|++|++++|... .+...+ ..+|+|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            33444555555554444322 22 24445555555544 333344444455555555544322 222122 234555555


Q ss_pred             EecCCCCcCCC-hhHhhcCCCccCEEeccCCcC
Q 036017          133 RLEGCKILGPF-PAFISLSLTNLEVLDLAHCKR  164 (283)
Q Consensus       133 ~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  164 (283)
                      ++++|.+.+.- ...+. .+++|+.|++.+|++
T Consensus        94 ~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLS-SLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS---SCCCCGGGG-G-TT--EEE-TT-GG
T ss_pred             ECcCCcCCChHHhHHHH-cCCCcceeeccCCcc
Confidence            55555443210 11222 445555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=6e-11  Score=88.09  Aligned_cols=124  Identities=29%  Similarity=0.393  Sum_probs=46.0

Q ss_pred             CceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CC-CCCCCCcEEeeeC
Q 036017           36 ELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DL-SETPNLERMYLLN  112 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-~~~~~L~~L~l~~  112 (283)
                      +++.|++.++.+..+.... .+.+|+.|++++|.+..+. .+..+++|+.|++.+|.+. .+. .+ ..+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcC
Confidence            6788888888887775544 5778888888888888764 3666788888888887743 343 23 3478888888887


Q ss_pred             CCCCCc-chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccC
Q 036017          113 CTNLPF-ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus       113 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~  161 (283)
                      |..... ....+..+++|++|++.+|++...  +-..+...+|+|+.||-..
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            654331 224566788888888888887642  1122222788888887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=3.5e-11  Score=94.25  Aligned_cols=127  Identities=22%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             CCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeE
Q 036017          102 TPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL  181 (283)
Q Consensus       102 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  181 (283)
                      +..|+++++++|. +..+-..+.-.|.++.|++++|.+.. +. .+. .+++|+.||+++|.. .....+-..+-+++.|
T Consensus       283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa-~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLA-ELPQLQLLDLSGNLL-AECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-eh-hhh-hcccceEeecccchh-HhhhhhHhhhcCEeee
Confidence            3445566665532 23333444555566666666655432 22 233 555666666665442 2222233344555566


Q ss_pred             eecCCCCCCCCchhhhcCCCCcEEeecCCCccccc--hhhhcCCCccEEecccccC
Q 036017          182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~  235 (283)
                      .+++|.+-+ + ..+.++=+|..||+++|++..+.  ..++++|.|+++.+-+|+.
T Consensus       358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            655533321 1 12344445666666666655332  2355666666666655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=9.9e-11  Score=107.46  Aligned_cols=210  Identities=20%  Similarity=0.233  Sum_probs=114.1

Q ss_pred             CcCCCcccCceEEEecCCC-CCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCC-CCCCC
Q 036017           28 QGLDYLPEELRYLHWHGYP-LRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPN  104 (283)
Q Consensus        28 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  104 (283)
                      .++..+| .|+.|++++|. +..+|... .+-+|++|+++++.+.++|..+.++..|.+|++..+.....++.+ ..+.+
T Consensus       565 ~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  565 EFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            3466677 88888887665 46777766 678888888888888888877888888888887776655555543 34777


Q ss_pred             CcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC----EEeccCCcCcccchhhhcCCCCC
Q 036017          105 LERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE----VLDLAHCKRLNRLSASICKLKSL  178 (283)
Q Consensus       105 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L  178 (283)
                      |++|.+.......  ....++..+..|+.+.......  .+...+. .++.|.    .+.+.++. .......++.+.+|
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L  719 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNL  719 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHHhHhhhhcccc-cceeecccccccCc
Confidence            8888776533111  1223344555555555533221  0111111 233332    22222211 12233456677788


Q ss_pred             CeEeecCCCCCCCCchhhh-----c-CCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017          179 SWLRLYNCSKLESFPGILE-----N-MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN  242 (283)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~-----~-~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~  242 (283)
                      +.|.+.+|...+....+..     . ++++..+...++.....+...-..++|+.|.+..|...+.+.+.
T Consensus       720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence            8888888776532111111     1 22333333333333333333345567777777777666544333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=3.5e-10  Score=96.58  Aligned_cols=189  Identities=29%  Similarity=0.344  Sum_probs=94.8

Q ss_pred             EEecCCCC-CccCCCCCCCcceEEecCCCCcccchhhhhccC-CccEEEccCCCCCCCC-CCCCCCCCCcEEeeeCCCCC
Q 036017           40 LHWHGYPL-RTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF-KLKSVDLCNSQNLTRM-PDLSETPNLERMYLLNCTNL  116 (283)
Q Consensus        40 L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  116 (283)
                      +....+.+ .........+.++.+++.++.+..++....... +|+.|+++++.. ..+ ..++.+++|+.|++++|. +
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~-l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-L  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCch-h
Confidence            44444443 222222244556666666666665555444442 566666665552 223 245556666666666543 2


Q ss_pred             CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhh
Q 036017          117 PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGIL  196 (283)
Q Consensus       117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  196 (283)
                      ..++......++|+.|++++|.+.. +|..+. ....|+++.++++... ..+..+..+.++..+.+..+.... .+..+
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~  251 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESI  251 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCcccc-Cchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchh
Confidence            3344333355566666666665432 444432 3334666666655322 222234444555555544433222 23344


Q ss_pred             hcCCCCcEEeecCCCccccchhhhcCCCccEEecccccC
Q 036017          197 ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       197 ~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      ..+++++.+++++|.++.++. ++...+++.|+++++..
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence            555556666666666665554 55556666666665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.6e-11  Score=95.98  Aligned_cols=179  Identities=19%  Similarity=0.174  Sum_probs=122.1

Q ss_pred             CcceEEecCCCCcc--cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcE
Q 036017           57 DKLVVLNLPCSNVE--LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSM  131 (283)
Q Consensus        57 ~~L~~l~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~  131 (283)
                      ..||++|++...++  .+-.-+..|.+|+.|.+.+++..+.+. .++.-.+|+.++++.|....+  ....+.+|..|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            45888899888777  333346778899999998887665554 577788899999988876654  3445788888999


Q ss_pred             EEecCCCCcCCChhHhhc-CCCccCEEeccCCcCc---ccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcCCCCcEEe
Q 036017          132 LRLEGCKILGPFPAFISL-SLTNLEVLDLAHCKRL---NRLSASICKLKSLSWLRLYNCSKLES-FPGILENMARLEYID  206 (283)
Q Consensus       132 L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~  206 (283)
                      |++++|....+....+.. --++|+.|++++++..   ..+......+|++.+|++++|..... ....+.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999988765443322221 2357888888887431   22333345788888888888765543 335566778888888


Q ss_pred             ecCCCcc--ccchhhhcCCCccEEecccccC
Q 036017          207 LRLTAIK--ELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       207 l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      +++|...  ..--.+...|+|.+|++.+|-.
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            8887654  1112346777888888877643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=1.4e-09  Score=93.01  Aligned_cols=194  Identities=29%  Similarity=0.389  Sum_probs=136.1

Q ss_pred             EEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCC-CCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC
Q 036017           61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETP-NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK  138 (283)
Q Consensus        61 ~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  138 (283)
                      .+....+.+......+.....++.+++.++. ...++ ...... +|+.|+++++. +..++..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence            4666666664434445566788888888877 44454 345553 89999988864 45555667888899999999888


Q ss_pred             CcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017          139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS  218 (283)
Q Consensus       139 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~  218 (283)
                      +.. ++.... ..+.|+.|+++++.+ ..++........|+++.++++.... .+..+..+.++..+.+.++.+..++..
T Consensus       175 l~~-l~~~~~-~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~  250 (394)
T COG4886         175 LSD-LPKLLS-NLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPES  250 (394)
T ss_pred             hhh-hhhhhh-hhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeeccch
Confidence            654 565544 677888999988764 4445444455668888888865332 334566777788888888888777777


Q ss_pred             hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccc
Q 036017          219 VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL  262 (283)
Q Consensus       219 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~  262 (283)
                      ++.++.+++|++++|. +..++. +..+.+++.|+++++.+...
T Consensus       251 ~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         251 IGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hccccccceecccccc-cccccc-ccccCccCEEeccCcccccc
Confidence            8888889999988854 444444 77788888999888777633

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.89  E-value=1.2e-10  Score=94.84  Aligned_cols=248  Identities=18%  Similarity=0.218  Sum_probs=169.5

Q ss_pred             CceEEEecCCCCCc---cCCCC-CCCcceEEecCCCC-ccc--chhhhhccCCccEEEccCCCCCCCCC--C-CCCCCCC
Q 036017           36 ELRYLHWHGYPLRT---LPTNL-STDKLVVLNLPCSN-VEL--LWEEKKEAFKLKSVDLCNSQNLTRMP--D-LSETPNL  105 (283)
Q Consensus        36 ~L~~L~l~~~~~~~---~~~~~-~~~~L~~l~l~~~~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~L  105 (283)
                      .|+.|++.|+.-..   +..+. .+|++++|.+-++. ++.  +-..-..|++|+++++..|...+...  . ...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            68899999987532   22223 78999999998885 331  22223458999999998876555432  2 3568999


Q ss_pred             cEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhh--hcCCCCCCe
Q 036017          106 ERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSAS--ICKLKSLSW  180 (283)
Q Consensus       106 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~  180 (283)
                      +++++++|..+..  +.....++..++.+...+|.-.+ +.-.....+++-+..+++..|...++...+  -.++..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            9999999976643  33455677778888777764221 111122225666777777777655443322  246889999


Q ss_pred             EeecCCCCCCCCc--hhhhcCCCCcEEeecCCC-cc--ccchhhhcCCCccEEecccccCCCC--CccccCCCcccceee
Q 036017          181 LRLYNCSKLESFP--GILENMARLEYIDLRLTA-IK--ELPSSVEHLEGLKELRMEYCYKLSK--LPDNLGSLRSLKRLH  253 (283)
Q Consensus       181 L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~  253 (283)
                      +..++|...+..+  .....+.+|+.+.++.+. ++  .+...-.+++.|+.+++.+|..+.+  +...-.+++.||.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            9999988766544  233468899999999975 44  4444457899999999999877743  444456889999999


Q ss_pred             cCCcc-cccc-----cHHhhccCCCCceeeccCCCC
Q 036017          254 TGKSA-ISQL-----PSSIADLKQVDGLSFYGCRGL  283 (283)
Q Consensus       254 l~~~~-i~~~-----~~~~~~~~~L~~L~l~~c~~l  283 (283)
                      ++.|+ |+.-     ...-..+..+..+.+.+|+.+
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            99876 4421     223356788999999999864

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=3.9e-09  Score=97.18  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             hhhcCCCCcEEeecCCCccccchh------hhc-CCCccEEecccccCCCCCccccCCCcccceeecCCccc-ccccHHh
Q 036017          195 ILENMARLEYIDLRLTAIKELPSS------VEH-LEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI-SQLPSSI  266 (283)
Q Consensus       195 ~~~~~~~L~~l~l~~~~l~~~~~~------~~~-~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i-~~~~~~~  266 (283)
                      .+..+.+|+.|.+.++.+.+....      ... ++++..+.+.+|.....+ .+..-.++|+.|.+..+.. .++....
T Consensus       712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCHH
Confidence            344556677777776666421110      111 344555555555544433 2223456788888777543 3443333


Q ss_pred             hccCCCC
Q 036017          267 ADLKQVD  273 (283)
Q Consensus       267 ~~~~~L~  273 (283)
                      ..+..++
T Consensus       791 k~~~~l~  797 (889)
T KOG4658|consen  791 KALLELK  797 (889)
T ss_pred             HHhhhcc
Confidence            3333333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.2e-10  Score=91.18  Aligned_cols=177  Identities=18%  Similarity=0.180  Sum_probs=116.9

Q ss_pred             CCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh--hhcCCCCCC
Q 036017          103 PNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA--SICKLKSLS  179 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~  179 (283)
                      ..|+.+++++..... .+-..+..|.+|+.+.+.++++.+.+...++ .-..|+.++++.|........  .+.+|..|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            348888888744332 3445678888999999998887777777777 778899999998876554332  356788899


Q ss_pred             eEeecCCCCCCCCch-hhh-cCCCCcEEeecCCCcc---ccchh-hhcCCCccEEecccccCCC-CCccccCCCccccee
Q 036017          180 WLRLYNCSKLESFPG-ILE-NMARLEYIDLRLTAIK---ELPSS-VEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRL  252 (283)
Q Consensus       180 ~L~l~~~~~~~~~~~-~~~-~~~~L~~l~l~~~~l~---~~~~~-~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L  252 (283)
                      +|++++|........ ... --+.|..|+++++.-.   ...+. ...+++|.+||++.|..++ .....+-+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            999998877654221 111 1245677777765322   22222 3678888888888776554 333456677788888


Q ss_pred             ecCCcccc--cccHHhhccCCCCceeeccC
Q 036017          253 HTGKSAIS--QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       253 ~l~~~~i~--~~~~~~~~~~~L~~L~l~~c  280 (283)
                      .++.|+.-  +-.-.+...|.|.+|++.+|
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            88877643  21123456778888888776

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=1.4e-08  Score=91.15  Aligned_cols=104  Identities=22%  Similarity=0.371  Sum_probs=64.0

Q ss_pred             CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCC
Q 036017          178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK  256 (283)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  256 (283)
                      ++.|++.++.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|+.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            555666666666666666666666666666666665 5666666666666666666666566666666666666666666


Q ss_pred             cccc-cccHHhhcc-CCCCceeeccCC
Q 036017          257 SAIS-QLPSSIADL-KQVDGLSFYGCR  281 (283)
Q Consensus       257 ~~i~-~~~~~~~~~-~~L~~L~l~~c~  281 (283)
                      |.++ .+|..+... .++..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            6665 555554432 344455555443

>PLN03150 hypothetical protein; Provisional

Probab=98.77  E-value=3.9e-08  Score=88.35  Aligned_cols=105  Identities=22%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEeccc
Q 036017          154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEY  232 (283)
Q Consensus       154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~  232 (283)
                      ++.|+++++.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            556666666655566666666666666766666666666666666666667777666666 5666666666677777666


Q ss_pred             ccCCCCCccccCCC-cccceeecCCcc
Q 036017          233 CYKLSKLPDNLGSL-RSLKRLHTGKSA  258 (283)
Q Consensus       233 ~~~~~~l~~~~~~l-~~L~~L~l~~~~  258 (283)
                      |...+.+|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            66555666555432 244455555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=8.9e-09  Score=80.83  Aligned_cols=217  Identities=15%  Similarity=0.103  Sum_probs=147.2

Q ss_pred             CceEEEecCCCCCccCCCC----CCCcceEEecCCCCcc---cchhhhhccCCccEEEccCCCCCCCCCCC-CCCCCCcE
Q 036017           36 ELRYLHWHGYPLRTLPTNL----STDKLVVLNLPCSNVE---LLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLER  107 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~----~~~~L~~l~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~  107 (283)
                      -++.+.+.++.+.......    .+..++.+++.+|.+.   .+..-+.++|.|+.|+++.|.....+... ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4566777788775544332    6899999999999987   34455778999999999999866666544 46778999


Q ss_pred             EeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccCCcCcc--cchhhhcCCCCCCeE
Q 036017          108 MYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCKRLN--RLSASICKLKSLSWL  181 (283)
Q Consensus       108 L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L  181 (283)
                      |.+.+.. ..+  ....+..+|.+++|.++.|.....  -...+..--+.++++....|....  ......+.+|++..+
T Consensus       126 lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9998743 332  334567888899998888843210  111121012356777777664321  112223457899999


Q ss_pred             eecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccch--hhhcCCCccEEecccccCCCCCc------cccCCCccccee
Q 036017          182 RLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKLSKLP------DNLGSLRSLKRL  252 (283)
Q Consensus       182 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~l~------~~~~~l~~L~~L  252 (283)
                      .+..|.+.+.-. .....++.+..|+++.+++..+.+  .+..++.|..|.+++++....+.      -.+++++++|.|
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            998887654322 344566778899999999996654  46789999999999987764332      224677888888


Q ss_pred             e
Q 036017          253 H  253 (283)
Q Consensus       253 ~  253 (283)
                      +
T Consensus       285 N  285 (418)
T KOG2982|consen  285 N  285 (418)
T ss_pred             c
Confidence            5

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=4.1e-08  Score=60.00  Aligned_cols=56  Identities=29%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017          202 LEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       202 L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  257 (283)
                      |+++++++|.++.++. .+..+++|+.|++++|.....-+..+..+++|+.|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444443332 1233444444444433322222223334444444444433

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.59  E-value=8.8e-08  Score=74.43  Aligned_cols=205  Identities=18%  Similarity=0.123  Sum_probs=122.1

Q ss_pred             CCCcceEEecCCCCccc-----chhhhhccCCccEEEccCCCCCCC------------CCCCCCCCCCcEEeeeCCCCCC
Q 036017           55 STDKLVVLNLPCSNVEL-----LWEEKKEAFKLKSVDLCNSQNLTR------------MPDLSETPNLERMYLLNCTNLP  117 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~~  117 (283)
                      .+..+..+++++|.+..     +...+++-.+|+..++++.. +..            .+.+..||+|+..+++.|.+-.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            45667777777777662     22334445566666665432 111            1235667788888887776555


Q ss_pred             cchh----hccCCCCCcEEEecCCCCcCCChhHhh------------cCCCccCEEeccCCcCcccch----hhhcCCCC
Q 036017          118 FISS----SIENLNNLSMLRLEGCKILGPFPAFIS------------LSLTNLEVLDLAHCKRLNRLS----ASICKLKS  177 (283)
Q Consensus       118 ~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~  177 (283)
                      ..|.    .+++...|++|.+++|.+-.....-++            ..-|.|+.+...+|++.....    ..+.....
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            4443    345667788888877754321111111            145678888888876643221    12334467


Q ss_pred             CCeEeecCCCCCCC-----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCCCc-cc---c
Q 036017          178 LSWLRLYNCSKLES-----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSKLP-DN---L  243 (283)
Q Consensus       178 L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~---~  243 (283)
                      |.++.+..|.+...     ....+.++.+|+.||+.+|.++     .+...+..|+.|++|.+..|-....-. ..   +
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            88888888766433     1234557788999999998887     334445778888999888886543211 11   1


Q ss_pred             --CCCcccceeecCCcccc
Q 036017          244 --GSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       244 --~~l~~L~~L~l~~~~i~  260 (283)
                        ...|+|+.|...+|.+.
T Consensus       267 ~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         267 NEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhhcCCCccccccchhhhc
Confidence              23567788877777553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=7.8e-08  Score=58.76  Aligned_cols=36  Identities=25%  Similarity=0.476  Sum_probs=13.8

Q ss_pred             hcCCCCcEEeecCCCccccch-hhhcCCCccEEeccc
Q 036017          197 ENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEY  232 (283)
Q Consensus       197 ~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~  232 (283)
                      ..+++|+++++++|.++.++. .+..+++|+.|++++
T Consensus        22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            333344444444444333322 223444444444443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=1.1e-08  Score=87.89  Aligned_cols=82  Identities=24%  Similarity=0.282  Sum_probs=36.8

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      .+.+|+.+++.+|.+..+...+..+++|++|++++|. +..+..+..++.|+.|++.+|.... + ..+..+++|+.+++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDL  169 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchh-c-cCCccchhhhcccC
Confidence            3445555555555555443333445555555555544 3333344444445555555443221 1 12223445555555


Q ss_pred             cCCCC
Q 036017          135 EGCKI  139 (283)
Q Consensus       135 ~~~~~  139 (283)
                      ++|.+
T Consensus       170 ~~n~i  174 (414)
T KOG0531|consen  170 SYNRI  174 (414)
T ss_pred             Ccchh
Confidence            55443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.50  E-value=6.7e-08  Score=75.08  Aligned_cols=205  Identities=17%  Similarity=0.121  Sum_probs=117.7

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC----cc--------CCCCCCCcceEEecCCCC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR----TL--------PTNLSTDKLVVLNLPCSN   68 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~--------~~~~~~~~L~~l~l~~~~   68 (283)
                      |..+..+++++|.|..+.    ...++..+.+-. +|+..+++.-..+    .+        +...+||+|+.+++++|.
T Consensus        29 ~d~~~evdLSGNtigtEA----~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          29 MDELVEVDLSGNTIGTEA----MEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             hcceeEEeccCCcccHHH----HHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            345677777777765421    223344455555 7777776654431    11        223378888888888887


Q ss_pred             cc-cch----hhhhccCCccEEEccCCCCCCCCC--C-------------CCCCCCCcEEeeeCCCCCCc----chhhcc
Q 036017           69 VE-LLW----EEKKEAFKLKSVDLCNSQNLTRMP--D-------------LSETPNLERMYLLNCTNLPF----ISSSIE  124 (283)
Q Consensus        69 ~~-~~~----~~l~~~~~L~~L~l~~~~~~~~~~--~-------------~~~~~~L~~L~l~~~~~~~~----~~~~~~  124 (283)
                      |. .++    +.+.+-..|++|.+.+|. ...+.  .             ..+-|.|+.+....|.+...    ....+.
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            76 333    345556778888887776 33321  1             23457788877776554331    222344


Q ss_pred             CCCCCcEEEecCCCCcCCCh-----hHhhcCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCCCc-h
Q 036017          125 NLNNLSMLRLEGCKILGPFP-----AFISLSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLESFP-G  194 (283)
Q Consensus       125 ~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~-~  194 (283)
                      ...+|+++.+..|.+...-.     ..+. ++.+|+.||+.+|.+..    .+...+..++.|++|.+..|-....-. .
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence            45677888887776543211     1222 56788888888876542    233345667778888888877654321 1


Q ss_pred             hhh-----cCCCCcEEeecCCCc
Q 036017          195 ILE-----NMARLEYIDLRLTAI  212 (283)
Q Consensus       195 ~~~-----~~~~L~~l~l~~~~l  212 (283)
                      .+.     ..++|..|.+.+|..
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhh
Confidence            111     245666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.49  E-value=1.6e-08  Score=86.74  Aligned_cols=106  Identities=21%  Similarity=0.219  Sum_probs=59.5

Q ss_pred             CCCcccCceEEEecCCCCCccCC-CCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017           30 LDYLPEELRYLHWHGYPLRTLPT-NLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM  108 (283)
Q Consensus        30 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  108 (283)
                      +..+. +++.|++.++.+..+.. ...+++|+.+++++|.+..+.. +..+..|+.|++.+|. +..+..+..++.|+.+
T Consensus        91 l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLL  167 (414)
T ss_pred             ccccc-ceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccCCccchhhhcc
Confidence            44455 66666666666666655 3356666666666666665432 4445556666666665 4444455556666666


Q ss_pred             eeeCCCCCCcchhh-ccCCCCCcEEEecCCCC
Q 036017          109 YLLNCTNLPFISSS-IENLNNLSMLRLEGCKI  139 (283)
Q Consensus       109 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~  139 (283)
                      +++++..... ... ...+.+++.+.+.++.+
T Consensus       168 ~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  168 DLSYNRIVDI-ENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cCCcchhhhh-hhhhhhhccchHHHhccCCch
Confidence            6666543221 111 34555666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=5.7e-08  Score=76.42  Aligned_cols=182  Identities=13%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC-ccCCC-CCCCcceEEecCCCCcc--cchhhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR-TLPTN-LSTDKLVVLNLPCSNVE--LLWEEKK   77 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~-~~~~~L~~l~l~~~~~~--~~~~~l~   77 (283)
                      +++|++++.+|.++.|+      ++...+.++| +|++|+++.+++. .+... ....+|+.+-+.+.++.  ..-..+.
T Consensus        71 ~~v~elDL~~N~iSdWs------eI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWS------EIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhccHH------HHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            45566666666655433      3344456666 6666666666652 12111 23456666666665544  3333445


Q ss_pred             ccCCccEEEccCCCC---CCCCCCCCC-CCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCC
Q 036017           78 EAFKLKSVDLCNSQN---LTRMPDLSE-TPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSL  151 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~---~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  151 (283)
                      .+|.++.++++.|..   ...-..... -+.++++.+..|....+  ...-...+|++..+.+-+|++.+.-...-...+
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            566666666665521   111011111 23444444444432211  111224556666666666654322111111234


Q ss_pred             CccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCC
Q 036017          152 TNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       152 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      +.+--|+++.+++.. .-...+.++++|+-|+++.+.+.+
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            455555665544321 112235566666666666655543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=1.3e-08  Score=88.87  Aligned_cols=193  Identities=18%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             cCCccEEEccCCCCCCCC-C-CCCCCCCCcEEeeeCCCCCCcchhhccCC-CCCcEEEecCC---------CCcCCChhH
Q 036017           79 AFKLKSVDLCNSQNLTRM-P-DLSETPNLERMYLLNCTNLPFISSSIENL-NNLSMLRLEGC---------KILGPFPAF  146 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~---------~~~~~~~~~  146 (283)
                      +++++.+.+-.......+ | .+..+.+|+.|.+.+|......  .+..+ ..|+.|--+..         ...+++...
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            455566655443333333 2 4567888999999887654321  11111 12333322211         000111111


Q ss_pred             hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh-hcCCCc
Q 036017          147 ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGL  225 (283)
Q Consensus       147 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~~~~L  225 (283)
                      +  .+-.|...+.++|+ ...+..++.-++.++.|+++.|++...  ..+..++.|++||+++|.++.+|..- ..+. |
T Consensus       161 ~--~Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  161 P--VWNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             h--hhhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence            1  23345666666654 345555666777888888888777653  25677888888888888888666542 3334 8


Q ss_pred             cEEecccccCCCCCccccCCCcccceeecCCccccccc--HHhhccCCCCceeeccCC
Q 036017          226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP--SSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~c~  281 (283)
                      +.|.+.+|...+ + ..+.++.+|+.||+++|-+.+..  ..++.+..|+.|.+.|||
T Consensus       235 ~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  235 QLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888888765432 2 23456778888888888776322  345566777778777775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.25  E-value=7.9e-07  Score=80.23  Aligned_cols=106  Identities=21%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             CCCcEEeeeCCCCCC-cchh-hccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCe
Q 036017          103 PNLERMYLLNCTNLP-FISS-SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW  180 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  180 (283)
                      .+|+.|++++..... .++. .-..+|+|+.|.+.+-.+..+--..+...+|+|..||++++.+...  ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            456666665533322 1222 2235566666666554432211122333566666666666543222  34555556666


Q ss_pred             EeecCCCCCC-CCchhhhcCCCCcEEeecCC
Q 036017          181 LRLYNCSKLE-SFPGILENMARLEYIDLRLT  210 (283)
Q Consensus       181 L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~  210 (283)
                      |.+.+-.+.. ..-..+..+.+|+.||++..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            6555422221 11123344555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=1.1e-05  Score=67.64  Aligned_cols=135  Identities=22%  Similarity=0.420  Sum_probs=75.4

Q ss_pred             CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017           99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL  178 (283)
Q Consensus        99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  178 (283)
                      +..+.+++.|++++| .+..+|   .-.++|++|.+++|.....+|..+   +++|+.|++++|.....+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence            344678888888887 344555   122368888888766555556544   3578888888874444333      346


Q ss_pred             CeEeecCCCC--CCCCchhhhcCCCCcEEeecCCC-cc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceee
Q 036017          179 SWLRLYNCSK--LESFPGILENMARLEYIDLRLTA-IK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH  253 (283)
Q Consensus       179 ~~L~l~~~~~--~~~~~~~~~~~~~L~~l~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  253 (283)
                      +.|++..+..  ...+|.      +|+.|.+..+. ..  ..+.  .-.++|+.|++.+|.... +|..+.  .+|+.|+
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~  183 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT  183 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence            6666654322  222332      35555553321 11  1111  112568888888877543 333332  4777887


Q ss_pred             cCCc
Q 036017          254 TGKS  257 (283)
Q Consensus       254 l~~~  257 (283)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.15  E-value=6.3e-07  Score=80.82  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             CCcceEEecCCCCcc--cchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEE
Q 036017           56 TDKLVVLNLPCSNVE--LLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP-FISSSIENLNNLSML  132 (283)
Q Consensus        56 ~~~L~~l~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L  132 (283)
                      +|.|+.|.+.+-.+.  .+..-..++++|..||++++. +..+..++++++|+.|.+.+-.+.. ..-..+-.+++|++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            455555555554333  222333445555555555544 3333444555555555544322221 111233445555555


Q ss_pred             EecCC
Q 036017          133 RLEGC  137 (283)
Q Consensus       133 ~l~~~  137 (283)
                      |++..
T Consensus       226 DIS~~  230 (699)
T KOG3665|consen  226 DISRD  230 (699)
T ss_pred             ecccc
Confidence            55543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=5.7e-07  Score=62.79  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=55.0

Q ss_pred             cCEEeccCCcCc--ccchhhhcCCCCCCeEeecCCCCCCCCchhh-hcCCCCcEEeecCCCccccchhhhcCCCccEEec
Q 036017          154 LEVLDLAHCKRL--NRLSASICKLKSLSWLRLYNCSKLESFPGIL-ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM  230 (283)
Q Consensus       154 L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l  230 (283)
                      +..++++.|.+.  ...+..+.....|...++++|.+.. +|+.+ .+++.++.+++++|.++.+|..+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            445566655432  1222233344455555666544433 33322 2344566666666666666666666666666666


Q ss_pred             ccccCCCCCccccCCCcccceeecCCccccccc
Q 036017          231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP  263 (283)
Q Consensus       231 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~  263 (283)
                      ..|+... .|..+..+.++..|+.-.|.+.+++
T Consensus       108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  108 RFNPLNA-EPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccCcccc-chHHHHHHHhHHHhcCCCCccccCc
Confidence            6654332 3344444555555655555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.04  E-value=2.8e-06  Score=74.47  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             cceeecCCcccc---cccHHhhccCCCCceeeccCCC
Q 036017          249 LKRLHTGKSAIS---QLPSSIADLKQVDGLSFYGCRG  282 (283)
Q Consensus       249 L~~L~l~~~~i~---~~~~~~~~~~~L~~L~l~~c~~  282 (283)
                      ++.|+++.+...   .+......+..++.+++.+|+.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            466666665432   2211111166677777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=6.5e-06  Score=46.24  Aligned_cols=41  Identities=27%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             CCccEEecccccCCCCCccccCCCcccceeecCCcccccccH
Q 036017          223 EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS  264 (283)
Q Consensus       223 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~  264 (283)
                      ++|++|++++|. ++.++..+.++++|+.|++++|.|+.++.
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            467888888764 44566667788888888888888776543

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.98  E-value=6.9e-08  Score=84.52  Aligned_cols=118  Identities=20%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             CCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchh-hccCCCCCcEEEecCCCCcCCC
Q 036017           65 PCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGCKILGPF  143 (283)
Q Consensus        65 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~  143 (283)
                      +.|.+..+..++.-++.+++|++++|++. ....+..+++|++|++++|... .+|. ...+|. |..|.+.+|.+.. +
T Consensus       172 syN~L~~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L  247 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L  247 (1096)
T ss_pred             chhhHHhHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h
Confidence            33333333344445566666666666532 2334556666666666654432 2221 122332 5566666554432 1


Q ss_pred             hhHhhcCCCccCEEeccCCcCccc-chhhhcCCCCCCeEeecCCCC
Q 036017          144 PAFISLSLTNLEVLDLAHCKRLNR-LSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       144 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~  188 (283)
                       ..+. ++.+|+.||+++|-+.+. -..-+..+..|+.|++.||.+
T Consensus       248 -~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  248 -RGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -hhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             1222 555666666666533221 111122344556666666444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.3e-05  Score=45.06  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=14.6

Q ss_pred             CceEEEecCCCCCccCC-CCCCCcceEEecCCCCcc
Q 036017           36 ELRYLHWHGYPLRTLPT-NLSTDKLVVLNLPCSNVE   70 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~~~~~   70 (283)
                      +|++|+++++.+..+++ ..++++|+.|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            34444444444444444 224444444444444444

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.89  E-value=3.3e-06  Score=74.07  Aligned_cols=111  Identities=25%  Similarity=0.346  Sum_probs=45.6

Q ss_pred             cCCccEEEccCCCCCCC--C-CCCCCCCCCcEEeeeCC-CCCCc----chhhccCCCCCcEEEecCCC-CcCCChhHhhc
Q 036017           79 AFKLKSVDLCNSQNLTR--M-PDLSETPNLERMYLLNC-TNLPF----ISSSIENLNNLSMLRLEGCK-ILGPFPAFISL  149 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~--~-~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~  149 (283)
                      ++.|+.+.+.++.....  . +....+++|++|+++++ .....    .......+++|+.++++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555554443332  1 12344555555555441 11111    11122344555555555544 22222223332


Q ss_pred             CCCccCEEeccCCcC-cc-cchhhhcCCCCCCeEeecCCCCC
Q 036017          150 SLTNLEVLDLAHCKR-LN-RLSASICKLKSLSWLRLYNCSKL  189 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~-~~-~~~~~l~~~~~L~~L~l~~~~~~  189 (283)
                      .+++|+.|.+.+|.. .. .+......+++|++|++++|...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            345555555444432 11 12222334555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=3.5e-05  Score=64.73  Aligned_cols=137  Identities=17%  Similarity=0.257  Sum_probs=85.2

Q ss_pred             hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc
Q 036017           75 EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL  154 (283)
Q Consensus        75 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  154 (283)
                      .+..+.+++.|++++|. +..+|.+  ..+|++|.+++|.....+|..+  .++|+.|.+++|.....+       +.+|
T Consensus        47 r~~~~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~sL  114 (426)
T PRK15386         47 QIEEARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PESV  114 (426)
T ss_pred             HHHHhcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cccc
Confidence            35668999999999984 5556522  2469999999987776666544  358999999988433322       3467


Q ss_pred             CEEeccCCcC--cccchhhhcCCCCCCeEeecCCCCCC--CCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEec
Q 036017          155 EVLDLAHCKR--LNRLSASICKLKSLSWLRLYNCSKLE--SFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM  230 (283)
Q Consensus       155 ~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l  230 (283)
                      +.|++..+..  ...+|      ++|+.|.+..+....  ..+.  .-.++|++|++++|....+|..+-  .+|+.|++
T Consensus       115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence            7888765332  12222      356677764422211  1111  112578888888877655443322  47888887


Q ss_pred             ccc
Q 036017          231 EYC  233 (283)
Q Consensus       231 ~~~  233 (283)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=4.1e-05  Score=57.28  Aligned_cols=126  Identities=20%  Similarity=0.242  Sum_probs=66.6

Q ss_pred             ceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCC-CCCCCcEEeeeCCC
Q 036017           37 LRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLS-ETPNLERMYLLNCT  114 (283)
Q Consensus        37 L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  114 (283)
                      -+.+++.+..+..+.... -..+...+++++|.+..+.. +..++.|..|.+.+|.+...-+.+. .+++|+.|.+++|.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            344455554443332222 34555666777766664432 4556667777776666443333333 35667777777654


Q ss_pred             CCCc-chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccCCc
Q 036017          115 NLPF-ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCK  163 (283)
Q Consensus       115 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  163 (283)
                      ...- -...+..||.|+.|.+.+|++...  +-......+|+|+.||+.+-.
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            3321 112345667777777777665421  111112256777777777643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.72  E-value=8.5e-05  Score=55.62  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCC
Q 036017           80 FKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI  139 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  139 (283)
                      .....+++.+|+ ....+.+..++.|.+|.+++|.....-|.-...+++|..|.+.+|.+
T Consensus        42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            344455555554 22333444555555555555443332222233444555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.63  E-value=1.3e-05  Score=56.21  Aligned_cols=111  Identities=16%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             CcEEeeeCCCCC--CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017          105 LERMYLLNCTNL--PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR  182 (283)
Q Consensus       105 L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  182 (283)
                      +..++++.|+..  .+.+..+..-..|+..++++|.+. .+|..+...++.++.+++..|.+ ..+|..+..++.|+.++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcc
Confidence            445566666432  233444555556667778877754 36655554677777888877663 34555577777888888


Q ss_pred             ecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017          183 LYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS  218 (283)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~  218 (283)
                      ++.|++.. .|..+..+.++..|+.-+|.+..++..
T Consensus       107 l~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCcccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence            87766554 444445567777777777777666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=1.7e-06  Score=67.70  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=53.0

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCC--CCCCCCCCCCcEEeeeCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR--MPDLSETPNLERMYLLNC  113 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~  113 (283)
                      +++.|+..||.+.++.....|+.|+.|.++-|.+..+. .+..|.+|+.|+++.|.+...  +..+.++|+|++|++..|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            45566666666666655556666666666666666553 245566666666666553221  123455666666666555


Q ss_pred             CCCCcch-----hhccCCCCCcEEE
Q 036017          114 TNLPFIS-----SSIENLNNLSMLR  133 (283)
Q Consensus       114 ~~~~~~~-----~~~~~~~~L~~L~  133 (283)
                      .-.+..+     ..+..+|+|+.|+
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            4433222     1234555555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.37  E-value=9.4e-05  Score=57.55  Aligned_cols=89  Identities=27%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             cCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc---cchhhhhccCCccEEEccCCCCCC--CCCCCC
Q 036017           26 LDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE---LLWEEKKEAFKLKSVDLCNSQNLT--RMPDLS  100 (283)
Q Consensus        26 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~  100 (283)
                      +......+. .++.+++.++.+.++..+-.+++|+.|.++.|++.   .+.-...++++|+++++++|++-.  .+.++.
T Consensus        35 ~~gl~d~~~-~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFV-ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccccccccc-chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            344455566 77788877777777666667788888888887433   233334456777777777776321  123445


Q ss_pred             CCCCCcEEeeeCCCC
Q 036017          101 ETPNLERMYLLNCTN  115 (283)
Q Consensus       101 ~~~~L~~L~l~~~~~  115 (283)
                      .+.+|..|++.+|..
T Consensus       114 ~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSV  128 (260)
T ss_pred             hhcchhhhhcccCCc
Confidence            555666666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=1.1e-05  Score=63.35  Aligned_cols=97  Identities=21%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch--hhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW--EEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~l~~~   79 (283)
                      .+.|+|++-+|.+..          ......+| .|+.|.++-|.+.++.+...|.+|++|++..|.+..+.  ..+.++
T Consensus        19 ~~vkKLNcwg~~L~D----------Isic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD----------ISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHhhhhcccCCCccH----------HHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            456778887776652          23356788 99999999999999988889999999999999999765  468899


Q ss_pred             CCccEEEccCCCCCCCCCC------CCCCCCCcEEe
Q 036017           80 FKLKSVDLCNSQNLTRMPD------LSETPNLERMY  109 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~  109 (283)
                      ++|+.|.+..|.....-+.      +.-+|+|+.|+
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999999988765444321      45678888886

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.0019  Score=50.43  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCc--c-ccchhhhcCCCccEEecccccCCC--CCccccCCCccc
Q 036017          175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAI--K-ELPSSVEHLEGLKELRMEYCYKLS--KLPDNLGSLRSL  249 (283)
Q Consensus       175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l--~-~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L  249 (283)
                      ...++.+++.++..++-  ..+..+++|++|.++.|..  . .++..+..+++|+++++++|....  .+ ..+..+++|
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence            44566666666555432  2345678999999999944  4 666666778999999999976542  22 234667788


Q ss_pred             ceeecCCccccccc----HHhhccCCCCceeeccC
Q 036017          250 KRLHTGKSAISQLP----SSIADLKQVDGLSFYGC  280 (283)
Q Consensus       250 ~~L~l~~~~i~~~~----~~~~~~~~L~~L~l~~c  280 (283)
                      ..|++.+|..+.+.    ..+.-+++|++|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            89999998887432    24456788888775543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.34  E-value=0.026  Score=39.79  Aligned_cols=117  Identities=18%  Similarity=0.238  Sum_probs=54.0

Q ss_pred             CcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCC
Q 036017           28 QGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSET  102 (283)
Q Consensus        28 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~  102 (283)
                      ..+..+. +|+.+.+.. .+..++...  ++++|+.+.+.++ +..+.. .+.++.+++.+.+...  ...++  .+..+
T Consensus         6 ~~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~   80 (129)
T PF13306_consen    6 NAFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-
T ss_pred             HHHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccc
Confidence            3456676 788888875 455565443  6778888888774 555443 3556778888888652  22222  56778


Q ss_pred             CCCcEEeeeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc
Q 036017          103 PNLERMYLLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL  154 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  154 (283)
                      ++++.+.+..+  ...++ ..+..+ +++.+.+..+ . ..++.....++++|
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~-~-~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN-I-TKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECCC-c-cEECCccccccccC
Confidence            88888888653  22322 335565 7888877652 2 22343333255554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.28  E-value=0.026  Score=39.75  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcE
Q 036017           55 STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSM  131 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  131 (283)
                      ++.+|+.+.+.. .+..+.. .+.++.+|+.+.+...  ...++  .+..+++++.+.+.. .........+..+++++.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            455666666553 3333332 2444555666665543  22222  345555566665543 111111122334555555


Q ss_pred             EEecC
Q 036017          132 LRLEG  136 (283)
Q Consensus       132 L~l~~  136 (283)
                      +.+..
T Consensus        86 i~~~~   90 (129)
T PF13306_consen   86 IDIPS   90 (129)
T ss_dssp             EEETT
T ss_pred             cccCc
Confidence            55543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0034  Score=29.25  Aligned_cols=18  Identities=28%  Similarity=0.495  Sum_probs=10.5

Q ss_pred             cceeecCCcccccccHHh
Q 036017          249 LKRLHTGKSAISQLPSSI  266 (283)
Q Consensus       249 L~~L~l~~~~i~~~~~~~  266 (283)
                      |++|++++|.++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            556666666666555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.51  E-value=0.0071  Score=26.14  Aligned_cols=15  Identities=20%  Similarity=0.456  Sum_probs=6.6

Q ss_pred             ccceeecCCcccccc
Q 036017          248 SLKRLHTGKSAISQL  262 (283)
Q Consensus       248 ~L~~L~l~~~~i~~~  262 (283)
                      +|+.|++++|.++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.28  E-value=0.0096  Score=27.68  Aligned_cols=16  Identities=44%  Similarity=0.796  Sum_probs=7.5

Q ss_pred             CcEEeecCCCccccch
Q 036017          202 LEYIDLRLTAIKELPS  217 (283)
Q Consensus       202 L~~l~l~~~~l~~~~~  217 (283)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4444454444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.13  E-value=0.00058  Score=59.42  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=16.5

Q ss_pred             cccceeecCCcccc-----cccHHhhccCCCCceeeccC
Q 036017          247 RSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       247 ~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c  280 (283)
                      ..++.++++.|.|+     .+...+..+++++++.+.++
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            34455555555554     22334444555555555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.29  E-value=0.012  Score=44.49  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=39.0

Q ss_pred             CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCc-c--ccchhhhcCCCccEEecccccCCCCC-ccccCCCcccceee
Q 036017          178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAI-K--ELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLH  253 (283)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l-~--~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~  253 (283)
                      ++.++-+++.+...--..+..+++++.+.+.+|.- .  .+...-.-.++|+.|++++|+.+++- ...+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            45555555444443334455556666666655432 2  11111124456666666666666422 23345556666665


Q ss_pred             cCC
Q 036017          254 TGK  256 (283)
Q Consensus       254 l~~  256 (283)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=0.02  Score=43.29  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=40.3

Q ss_pred             CCcceEEecCCCCccc-chhhhhccCCccEEEccCCCCCCCC--CCCC-CCCCCcEEeeeCCCCCCcch-hhccCCCCCc
Q 036017           56 TDKLVVLNLPCSNVEL-LWEEKKEAFKLKSVDLCNSQNLTRM--PDLS-ETPNLERMYLLNCTNLPFIS-SSIENLNNLS  130 (283)
Q Consensus        56 ~~~L~~l~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  130 (283)
                      -..++.++-+++.+.. -.+.+.+++.++.|.+.+|......  ..++ -.++|+.|++++|.-+++.. ..+..+++|+
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            3456666666665552 2244556666666666666544331  1121 24556666665555444322 2234445555


Q ss_pred             EEEecC
Q 036017          131 MLRLEG  136 (283)
Q Consensus       131 ~L~l~~  136 (283)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.53  E-value=0.11  Score=25.04  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=16.2

Q ss_pred             CcccceeecCCcccccccHHh
Q 036017          246 LRSLKRLHTGKSAISQLPSSI  266 (283)
Q Consensus       246 l~~L~~L~l~~~~i~~~~~~~  266 (283)
                      +++|+.|++++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357888888888888887654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.53  E-value=0.11  Score=25.04  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=16.2

Q ss_pred             CcccceeecCCcccccccHHh
Q 036017          246 LRSLKRLHTGKSAISQLPSSI  266 (283)
Q Consensus       246 l~~L~~L~l~~~~i~~~~~~~  266 (283)
                      +++|+.|++++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357888888888888887654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.50  E-value=0.12  Score=24.97  Aligned_cols=15  Identities=20%  Similarity=0.556  Sum_probs=11.7

Q ss_pred             cCCCCceeeccCCCC
Q 036017          269 LKQVDGLSFYGCRGL  283 (283)
Q Consensus       269 ~~~L~~L~l~~c~~l  283 (283)
                      |++|++|++++|++|
T Consensus         1 c~~L~~L~l~~C~~i   15 (26)
T smart00367        1 CPNLRELDLSGCTNI   15 (26)
T ss_pred             CCCCCEeCCCCCCCc
Confidence            577888888888764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.57  E-value=0.0075  Score=52.62  Aligned_cols=86  Identities=26%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             CCCCCeEeecCCCCCCC----CchhhhcCCC-CcEEeecCCCccc-----cchhhhcC-CCccEEecccccCCC----CC
Q 036017          175 LKSLSWLRLYNCSKLES----FPGILENMAR-LEYIDLRLTAIKE-----LPSSVEHL-EGLKELRMEYCYKLS----KL  239 (283)
Q Consensus       175 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~~----~l  239 (283)
                      ..++++|++..|..+..    ....+...++ +..+++..|.+..     ....+..+ ..++.+++..|....    .+
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            34455555555544421    1112222233 4445555555541     12222233 445666666655442    23


Q ss_pred             ccccCCCcccceeecCCcccc
Q 036017          240 PDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       240 ~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ...+..+++++.+.+++|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence            344455556666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.04  E-value=0.38  Score=22.61  Aligned_cols=14  Identities=21%  Similarity=0.370  Sum_probs=7.9

Q ss_pred             cccceeecCCcccc
Q 036017          247 RSLKRLHTGKSAIS  260 (283)
Q Consensus       247 ~~L~~L~l~~~~i~  260 (283)
                      ++|+.|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45667777776665

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.02  E-value=0.53  Score=22.79  Aligned_cols=18  Identities=33%  Similarity=0.599  Sum_probs=15.0

Q ss_pred             cccceeecCCcccccccH
Q 036017          247 RSLKRLHTGKSAISQLPS  264 (283)
Q Consensus       247 ~~L~~L~l~~~~i~~~~~  264 (283)
                      ++|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468889999999988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASICK---------LKSLSWLRLYNCSKLESFP 193
            PA I+ SL  L  L +  C  L  L   +           L +L  LRL   + + S P
Sbjct: 142 LPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLP 199
Query: 194 GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
             + N+  L+ + +R + +  L  ++ HL  L+EL +  C  L   P   G    LKRL 
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 254 TGK-SAISQLPSSIADLKQVDGLSFYGC 280
               S +  LP  I  L Q++ L   GC
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 1e-26
 Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 22/268 (8%)

Query: 33  LPEELRYLHWHGYPLRTLPTNLST----DKLVVLNLPCSNVELLWEEKKEA--FKLKSVD 86
             + L     H    R    +       +   +       ++   +  ++A      +++
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 87  LCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPA 145
           L +   L + PD      +L+ M + +   L  +  +++    L  L L     L   PA
Sbjct: 88  LRSVP-LPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAGLETLTLARNP-LRALPA 144

Query: 146 FISLSLTNLEVLDLAHCKRLNRLSASICK---------LKSLSWLRLYNCSKLESFPGIL 196
            I+ SL  L  L +  C  L  L   +           L +L  LRL   + + S P  +
Sbjct: 145 SIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASI 202

Query: 197 ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH-TG 255
            N+  L+ + +R + +  L  ++ HL  L+EL +  C  L   P   G    LKRL    
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 256 KSAISQLPSSIADLKQVDGLSFYGCRGL 283
            S +  LP  I  L Q++ L   GC  L
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 6e-26
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 18/248 (7%)

Query: 37  LRYLHWHGYPLRTLP---TNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNL 93
            +     G  L+       + +    V L L    +    ++      L+ + +  +  L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-L 116

Query: 94  TRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS---- 148
             +PD + +   LE + L     L  + +SI +LN L  L +  C  L   P  ++    
Sbjct: 117 MELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 149 ----LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEY 204
                 L NL+ L L     +  L ASI  L++L  L++ N   L +    + ++ +LE 
Sbjct: 176 SGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEE 233

Query: 205 IDLR-LTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH-TGKSAISQL 262
           +DLR  TA++  P        LK L ++ C  L  LP ++  L  L++L   G   +S+L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 263 PSSIADLK 270
           PS IA L 
Sbjct: 294 PSLIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 1e-22
 Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 31/207 (14%)

Query: 104 NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFP------------------- 144
             E +Y    T L      +                                        
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 145 -AFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLE 203
                 +      L+L     L +      +L  L  + +     L   P  ++  A LE
Sbjct: 73  DLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLE 130

Query: 204 YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGS---------LRSLKRLHT 254
            + L    ++ LP+S+  L  L+EL +  C +L++LP+ L S         L +L+ L  
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 255 GKSAISQLPSSIADLKQVDGLSFYGCR 281
             + I  LP+SIA+L+ +  L      
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 122 SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL 181
              + +    L  +G   L P+   +S         D          +       +    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRW----HSAWRQANSNNPQIE 61

Query: 182 RLYNCSKLESFPGILEN--MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
                  L++   +LE+        ++LR   + + P     L  L+ + ++    L +L
Sbjct: 62  TR-TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMEL 119

Query: 240 PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283
           PD +     L+ L   ++ +  LP+SIA L ++  LS   C  L
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 49/265 (18%)

Query: 1   MTNLRLLKFYLHNLRGDP------IMSSKVHLD---QGLDYLPEE------LRYLHWHGY 45
             N ++       L+             +V L+     L   P++      L+++     
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

Query: 46  PLRTLPTNLST-DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPD------ 98
            L  LP  +     L  L L  + +  L        +L+ + +     LT +P+      
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 99  ----LSETPNLERMYL----------------------LNCTNLPFISSSIENLNNLSML 132
                    NL+ + L                      +  + L  +  +I +L  L  L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 133 RLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESF 192
            L GC  L  +P         L+ L L  C  L  L   I +L  L  L L  C  L   
Sbjct: 235 DLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 193 PGILENMARLEYIDLRLTAIKELPS 217
           P ++  +     I +      +L  
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQ 318

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 38/231 (16%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLE 106
              L  ++S ++   + +    + L ++++     L    +  +  +  +   S   +L+
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI-SLK 426

Query: 107 RMYLLNCTN-LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRL 165
              + N TN + FIS +I+ L  L ++            A       + E  +  + K+ 
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQY 480

Query: 166 NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLR----------LTAIKEL 215
                S   LK L+ + LYNC  +   P  L ++  L+ +++                 L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 216 PSSVEHLEGLKELRMEYCYKLSKLPDN--LGSLRSLKRLHTGKSAISQLPS 264
               +    ++   M Y   L + P +  L  +  L  L    + +  L +
Sbjct: 541 ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 26/209 (12%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC-----TNLP---FISSSIENLNNLSML 132
           +++ +   +++ L  +P++    ++  M  ++       +       S       N S +
Sbjct: 620 QVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 133 RLEGCKILGPFPAFISLSLTNLEVLDLAHCK-------RLNRLSASICKLKSLSWLRLYN 185
            L   +I        + + + +  + L++          L     +      L+ + L  
Sbjct: 679 TLSYNEIQKFPTELFA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 186 CSKLESFP--GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS------ 237
             KL S         +  L  +D+        P+   +   LK   + +           
Sbjct: 738 N-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 238 KLPDNLGSLRSLKRLHTGKSAISQLPSSI 266
           + P  + +  SL +L  G + I ++   +
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 23/228 (10%), Positives = 69/228 (30%), Gaps = 28/228 (12%)

Query: 25  HLDQGLDYLPEELRYLHWHGYPLRTLPTNLST---DKLVVLNLPCSNVELLWEE------ 75
            + +      +++  L +    L+ +P   +      +  ++   + +            
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 76  KKEAFKLKSVDLCNSQNLTRMPD--LSETPNLERMYL-------LNCTNLPFISSSIENL 126
             +     +V L  ++ + + P    +    +  + L       +   +L     + +N 
Sbjct: 669 DYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 127 NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRL--- 183
             L+ + L   K+      F + +L  L  +D+++    +           L    +   
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 184 ---YNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKEL 228
                   L  +P  +     L  + +    I+++   +     L  L
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 7/139 (5%)

Query: 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209
           +   +  L LA      R+  +I +L  L  L     S+  S     +     +  + R 
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 210 TAI-----KELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS--AISQL 262
             I     K      + L     L+          P    S  SLK    G     I+ +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 263 PSSIADLKQVDGLSFYGCR 281
             +I  L ++  + F    
Sbjct: 441 SKAIQRLTKLQIIYFANSP 459

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 53/259 (20%), Positives = 114/259 (44%), Gaps = 23/259 (8%)

Query: 35  EELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEAFK----LKSVDLC 88
             LR L      L+ +P  +      L  L++  + + +L       F+    LKS+++ 
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL---LDYMFQDLYNLKSLEV- 135

Query: 89  NSQNLTRMPD--LSETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGCKILG-PFP 144
              +L  +     S   +LE++ L  C NL  I + ++ +L+ L +LRL    I      
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 145 AFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARLE 203
           +F    L  L+VL+++H   L+ ++ +     +L+ L + +C  L + P   + ++  L 
Sbjct: 195 SF--KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLR 251

Query: 204 YIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAISQ 261
           +++L    I  +  S+   L  L+E+++    +L+ +       L  L+ L+   + ++ 
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 262 LPSSI-ADLKQVDGLSFYG 279
           L  S+   +  ++ L    
Sbjct: 311 LEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 41/207 (19%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP 142
           ++V  C+ +    +P+                 +P             +L L   +I   
Sbjct: 14  RAVL-CHRKRFVAVPE----------------GIP---------TETRLLDLGKNRI-KT 46

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSA----SICKLKSLSWLRLYNCSKLESFP-GILE 197
                  S  +LE L+L      N +SA    +   L +L  L L +  +L+  P G+  
Sbjct: 47  LNQDEFASFPHLEELELNE----NIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT 101

Query: 198 NMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTG 255
            ++ L  +D+    I  L   + + L  LK L +     L  +       L SL++L   
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE 160

Query: 256 KSAISQLPS-SIADLKQVDGLSFYGCR 281
           K  ++ +P+ +++ L  +  L      
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLN 187

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 36/251 (14%)

Query: 27  DQGLDYLPEE----LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKL 82
           + GL  LP+     +  L      L +LP      +L  L +  + +  L        +L
Sbjct: 49  ESGLTTLPDCLPAHITTLVIPDNNLTSLPALPP--ELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP 142
                  +  L  +P       L ++++     L  +      L  LS+   +    L  
Sbjct: 107 SIFSNPLTH-LPALPS-----GLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQ----LAS 155

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARL 202
            PA  S  L  L   +     +L  L      L+ LS   + +  +L S P +   + +L
Sbjct: 156 LPALPS-ELCKLWAYNN----QLTSLPMLPSGLQELS---VSDN-QLASLPTLPSELYKL 206

Query: 203 EYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL 262
              + RLT++  LPS       LKEL +    +L+ LP     L+    L    + ++ L
Sbjct: 207 WAYNNRLTSLPALPSG------LKELIVSGN-RLTSLPVLPSELKE---LMVSGNRLTSL 256

Query: 263 PSSIADLKQVD 273
           P   + L  + 
Sbjct: 257 PMLPSGLLSLS 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 27/160 (16%)

Query: 126 LNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN 185
            N  ++L +     L   P  +     ++  L +     L  L A   +L++L    +  
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCL---PAHITTLVIPDN-NLTSLPALPPELRTL---EVSG 90

Query: 186 CSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLE--------------GLKELRME 231
             +L S P +   +  L      LT +  LPS +  L               GL+EL + 
Sbjct: 91  N-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

Query: 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQ 271
              +L+ LP     L  L   +   + ++ LP   + L++
Sbjct: 150 DN-QLASLPALPSELCKLWAYN---NQLTSLPMLPSGLQE 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 44/266 (16%), Positives = 81/266 (30%), Gaps = 43/266 (16%)

Query: 30  LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCN 89
           L  LP  L  L   G  L +LP       L  L++  + +  L        +L  +   N
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPP--GLQELSVSDNQLASL---PALPSELCKLWAYN 170

Query: 90  SQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFI 147
           +Q LT +P       L+ + + +    +LP         + L  L     ++       +
Sbjct: 171 NQ-LTSLPM--LPSGLQELSVSDNQLASLP------TLPSELYKLWAYNNRL-----TSL 216

Query: 148 SLSLTNLEVLDLAHCKRLNRLSASICKLKSLS-----------------WLRLYNCSKLE 190
               + L+ L ++   RL  L     +LK L                   L +Y   +L 
Sbjct: 217 PALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLT 274

Query: 191 SFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLK 250
             P  L +++    ++L    + E                 Y   + +      S     
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG---YSGPIIRFDMAGASAPRET 331

Query: 251 RLHTGKSAISQLPSSIADLKQVDGLS 276
           R     +A   +P+   +    D   
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 172 ICKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM 230
            C     + L +     L + P  +  +   +  + +    +  LP        L+ L +
Sbjct: 36  ACLNNGNAVLNVGES-GLTTLPDCLPAH---ITTLVIPDNNLTSLP---ALPPELRTLEV 88

Query: 231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL 269
               +L+ LP     L  L       + +  LPS +  L
Sbjct: 89  SGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 28/197 (14%), Positives = 71/197 (36%), Gaps = 18/197 (9%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
           KL+   + NS  +            E                 +NL +L+ + +  C  L
Sbjct: 207 KLRQFYMGNSPFVAENI----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 141 GPFPAFISLSLTNLEVLDLAHCK--------RLNRLSASICKLKSLSWLRLYNCSKLESF 192
              P F+  +L  ++++++A  +           +  A     + +  + +     L++F
Sbjct: 263 TKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF 320

Query: 193 --PGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL-GSLRSL 249
                L+ M +L  ++     ++    +      L  L + Y  +++++P N  G    +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQV 379

Query: 250 KRLHTGKSAISQLPSSI 266
           + L    + +  +P+  
Sbjct: 380 ENLSFAHNKLKYIPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 22/187 (11%), Positives = 52/187 (27%), Gaps = 9/187 (4%)

Query: 99  LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLD 158
           L+    +  + L        +  +I  L  L +L L           F    ++     +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 159 LAHCKRLNRLSASI-----CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK 213
                R++     +          L    + +  + +S         +   I      I 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 214 ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVD 273
            +  +V  L  L++  M     +++         + +     K+          +LK + 
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLT 252

Query: 274 GLSFYGC 280
            +  Y C
Sbjct: 253 DVEVYNC 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 81  KLKSVDLCNSQNLTRMPD--LSETPNLERMYL-------LNCTNLPFISSSIENLNNLSM 131
            + S++L N+Q +++ P    S    L  + L       +   +L   + + +N   L+ 
Sbjct: 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 132 LRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNC----- 186
           + L   K+      F + +L  L  +DL++    ++         +L    + N      
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 187 -SKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGS 245
              L  +P  +     L  + +    I+++   +     +  L ++    +S     +  
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 246 LRSLKRLH 253
                   
Sbjct: 610 YIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 122 SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCK-RLNRLSASICKLKSLSW 180
           S+ +   ++ L LEG    G  P  I   LT LEVL L     ++N        + +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP 240
                  ++      ++   R ++ DL    I   P                      + 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ------------------KSIK 176

Query: 241 DNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
            +        ++    + I+ +  ++  L ++         
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 45/278 (16%), Positives = 105/278 (37%), Gaps = 20/278 (7%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           ++++R L   L +        S + +D+        ++ L + G    ++ T+ S ++L+
Sbjct: 195 LSSVRYL--ELRDTNLARFQFSPLPVDEVS----SPMKKLAFRG----SVLTDESFNELL 244

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L      +  +  +      L   +   S  ++ +  + ET  + R+++        +S
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLFYDLS 303

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCK---RLNRLSASICKLKS 177
           +    L  +  + +E  K+    P   S  L +LE LDL+         + SA      S
Sbjct: 304 TVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 178 LSWLRLYNC--SKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK 235
           L  L L       ++    IL  +  L  +D+       +P S +  E ++ L +     
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-G 421

Query: 236 LSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVD 273
           +  +   +   ++L+ L    + +      +  L+++ 
Sbjct: 422 IRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELY 457

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILG-PFP 144
             S++ T +P    T  ++ + L     T +      +    NL +L L+  +I      
Sbjct: 12  GRSRSFTSIPS-GLTAAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRINTIEGD 68

Query: 145 AFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCSKLESFP--GILENMAR 201
           AF   SL +LE LDL+    L+ LS+S    L SL +L L      ++     +  N+  
Sbjct: 69  AF--YSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTN 124

Query: 202 LEYIDL-RLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSA 258
           L+ + +  +    E+       L  L EL ++    L       L S+R +  L    S 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 259 ISQLPSSIAD 268
            + L    AD
Sbjct: 184 SAFLLEIFAD 193

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 35/202 (17%), Positives = 77/202 (38%), Gaps = 10/202 (4%)

Query: 81  KLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEG 136
            L+ +DL ++  L+ +         +L+ + L+      L  ++S   NL NL  LR+  
Sbjct: 75  SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGN 132

Query: 137 CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFPGI 195
            +            LT+L  L++     L    + S+  ++ +  L L+           
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTG 255
            + ++ + Y++LR T +     S   ++ +     +  ++ S L D   S   L +L   
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE--SFNELLKLLRY 249

Query: 256 KSAISQLPSSIADLKQVDGLSF 277
              +S++      L  +   + 
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNP 271

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 33/253 (13%), Positives = 92/253 (36%), Gaps = 13/253 (5%)

Query: 36  ELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEK--KEAFKLKSVDLCNSQ 91
            L +L      L +L ++       L  LNL  +  + L           L+++ + N +
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 92  NLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISL 149
             + +   D +   +L  + +   +   + S S++++ ++  L L   +         + 
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFAD 193

Query: 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209
            L+++  L+L          + +   +  S ++                + +L    L L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 210 TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI-AD 268
           + ++    ++  L        +   +L K+        +++RLH  +  +    S++ + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKV-----ETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 269 LKQVDGLSFYGCR 281
           L++V  ++    +
Sbjct: 309 LEKVKRITVENSK 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF----KLKSVDLCNSQNLTRMPD--LS 100
           LR +P  +ST+   +LNL  + ++++   K  +F     L+ + L  +  +  +     +
Sbjct: 55  LREVPDGISTN-TRLLNLHENQIQII---KVNSFKHLRHLEILQLSRNH-IRTIEIGAFN 109

Query: 101 ETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL 159
              NL  + L +   L  I +     L+ L  L L    I    P++    + +L  LDL
Sbjct: 110 GLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDL 167

Query: 160 AHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218
              KRL+ +S      L +L +L L  C  L   P  L  + +L+ +DL    +  +   
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGNHLSAIRPG 225

Query: 219 V-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAISQLPSSI-ADLKQVDGL 275
             + L  L++L M    ++  +  N   +L+SL  ++   + ++ LP  +   L  ++ +
Sbjct: 226 SFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 276 SFYG 279
             + 
Sbjct: 285 HLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 35/211 (16%)

Query: 81  KLKSVDLCNSQNLTRMP-----------------------DLSETPNLERMYLLNCTNLP 117
           +   V  C  +NL  +P                             +LE + L    ++ 
Sbjct: 44  QFSKVI-CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIR 101

Query: 118 FISSSI-ENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CK 174
            I       L NL+ L L   ++   P  AF  + L+ L+ L L +   +  + +    +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLRNN-PIESIPSYAFNR 158

Query: 175 LKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYC 233
           + SL  L L    +L     G  E ++ L Y++L +  ++E+P ++  L  L EL +   
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN 217

Query: 234 YKLSKLPDN-LGSLRSLKRLHTGKSAISQLP 263
             LS +       L  L++L   +S I  + 
Sbjct: 218 -HLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 15/188 (7%)

Query: 84  SVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILG 141
           +   C  Q L  +P  +      +R++L     +  + ++      NL++L L    +  
Sbjct: 15  TTS-CPQQGLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 142 -PFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILEN 198
               AF    L  LE LDL+   +L  +  +    L  L  L L  C  L+    G+   
Sbjct: 71  IDAAAF--TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRG 127

Query: 199 MARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGK 256
           +A L+Y+ L+  A++ LP      L  L  L +    ++S +P+     L SL RL   +
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQ 186

Query: 257 SAISQLPS 264
           + ++ +  
Sbjct: 187 NRVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 29/215 (13%)

Query: 33  LPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEAF----KLKSVD 86
           +P   + +  HG  +  +P     +   L +L L  + +  +      AF     L+ +D
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI---DAAAFTGLALLEQLD 86

Query: 87  LCNSQNLTRMPD--LSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILG- 141
           L ++  L  +          L  ++L  C    L         L  L  L L+   +   
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQAL 144

Query: 142 PFPAFISLSLTNLEVLDLAHCKRLNRLSA----SICKLKSLSWLRLYNCSKLESFP-GIL 196
           P   F    L NL  L L      NR+S+    +   L SL  L L+   ++        
Sbjct: 145 PDDTF--RDLGNLTHLFLHG----NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAF 197

Query: 197 ENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRM 230
            ++ RL  + L    +  LP+     L  L+ LR+
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 40/203 (19%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI- 139
           +     L  +  +T +    E  ++ ++ +     +  I   IE L NL  L L G +I 
Sbjct: 23  EGIRAVLQKAS-VTDVVTQEELESITKLVV-AGEKVASIQG-IEYLTNLEYLNLNGNQIT 79

Query: 140 -LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198
            + P       +L  L  L +   K +  +SA +  L +L  L L     +      L N
Sbjct: 80  DISPL-----SNLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNED-NISDISP-LAN 130

Query: 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258
           + ++  ++L         S + ++ GL  L +    K+  +   + +L  L  L    + 
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVT-PIANLTDLYSLSLNYNQ 188

Query: 259 ISQLPSSIADLKQVDGLSFYGCR 281
           I  + S +A L  +   + Y  +
Sbjct: 189 IEDI-SPLASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 36/224 (16%), Positives = 91/224 (40%), Gaps = 35/224 (15%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFIS------------------ 120
           K+ S++L  + NL+ +  LS    L  + +      ++  I+                  
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLS-LTNLEVLDLAHCKRLNRLS--ASICKLKS 177
           S + +L +L        +I         ++ +T L  L + +    N+++  + +  L  
Sbjct: 193 SPLASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGN----NKITDLSPLANLSQ 244

Query: 178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237
           L+WL +    ++      ++++ +L+ +++    I ++ S + +L  L  L +      +
Sbjct: 245 LTWLEIGTN-QISDINA-VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN 301

Query: 238 KLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
           +  + +G L +L  L   ++ I+ +   +A L ++D   F    
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 25/162 (15%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLS-LTNLEVLDLAHCKRLNRLSASICKLKSLS 179
               +L       L+   +       ++   L ++  L +A   ++  +   I  L +L 
Sbjct: 16  FPDADLAEGIRAVLQKASVTDV----VTQEELESITKLVVAGE-KVASIQG-IEYLTNLE 69

Query: 180 WLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL 239
           +L L    ++      L N+ +L  + +    I ++  ++++L  L+EL +     +S +
Sbjct: 70  YLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDI 125

Query: 240 PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
              L +L  +  L+ G +      S ++++  ++ L+    +
Sbjct: 126 S-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 25/136 (18%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCK 138
           +L S+ + N++ +T +  L+    L  + +     +++     ++++L  L ML +   +
Sbjct: 222 RLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQ 276

Query: 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198
           I        +L  + L  L L + +  N     I  L +L+ L L     +      L +
Sbjct: 277 ISD-ISVLNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LAS 331

Query: 199 MARLEYIDLRLTAIKE 214
           +++++  D     IK+
Sbjct: 332 LSKMDSADFANQVIKK 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 13/207 (6%)

Query: 82  LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKIL 140
            +  D C+   LT++PD   T N+  + L +   L    +++    + L+ L +    I 
Sbjct: 6   HEVAD-CSHLKLTQVPDDLPT-NITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFPGILENM 199
              P      L  L+VL+L H + L++LS  +     +L+ L L + S  +         
Sbjct: 63  KLEPELCQ-KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 200 ARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN---LGSLRSLKRLHTG 255
             L  +DL    +      +   LE L+EL +    K+  L      + +  SLK+L   
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELS 179

Query: 256 KSAISQL-PSSIADLKQVDGLSFYGCR 281
            + I +  P     + ++ GL     +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 118 FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKS 177
             S +   L +L +L L   +I           L N+  + L++ K L     S   + S
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 178 LSWLRLYNC--SKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCY 234
           L  L L       ++S P   + +  L  +DL    I  +   + E LE L+ L +++  
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN- 514

Query: 235 KLSKLPDN---------LGSLRSLKRLHTGKSAISQLPSSI 266
            L++L  +         L  L  L  L+   +   ++P  +
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 118 FISSSIENLNNLSMLRLEGCKILGPFPA--FISLSLTNLEVLDLAHCKRLNRLSASI--- 172
           F       +  L  L L   ++         + L+ T++  L L++  +L+  S +    
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLG 244

Query: 173 CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRME 231
            K  +L+ L L   +           + +LEY  L    I+ L   S+  L  ++ L ++
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 232 YCYKLSKLPDN---------LGSLRSLKRLHTGKSAISQLPSSI 266
             +    +               L+ L+ L+   + I  + S++
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 38/189 (20%)

Query: 81  KLKSVDLCNSQNLTRMPD-LSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGC 137
            +  + L  ++ L    +  +  P+L+R+ L      N+    S  + L NL++L L   
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 138 KILGPFPAFISLSLTNLEVLDLAH---------------------CKRLNRLSASICKLK 176
            I       +   L  LE+LDL H                        L+ L+       
Sbjct: 491 NIANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 177 SLSWLRLYNCSKLESF-----------PGILENMARLEYIDLRLTAIKELPSSV--EHLE 223
            +      +  +L+               +  N   L+ ++L+   I  +   V      
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 224 GLKELRMEY 232
            L EL M +
Sbjct: 610 NLTELDMRF 618

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 21/244 (8%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK----LKSVDLCNSQNLTRMPD--LS 100
           L  +P  + ++    LNL  +N++++   + + F+    L+ + L  +  + ++     +
Sbjct: 66  LSEVPQGIPSN-TRYLNLMENNIQMI---QADTFRHLHHLEVLQLGRNS-IRQIEVGAFN 120

Query: 101 ETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL 159
              +L  + L +   L  I S   E L+ L  L L    I    P++    + +L  LDL
Sbjct: 121 GLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDL 178

Query: 160 AHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218
              K+L  +S      L +L +L L  C  ++  P  L  +  LE +++      E+   
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGNHFPEIRPG 236

Query: 219 V-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAISQLPSSI-ADLKQVDGL 275
               L  LK+L +    ++S +  N    L SL  L+   + +S LP  +   L+ +  L
Sbjct: 237 SFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 276 SFYG 279
             + 
Sbjct: 296 HLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 47/212 (22%), Positives = 80/212 (37%), Gaps = 35/212 (16%)

Query: 81  KLKSVDLCNSQNLTRMP-----------------------DLSETPNLERMYLLNCTNLP 117
           +   V  C  + L+ +P                             +LE + L    ++ 
Sbjct: 55  QFSKVV-CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIR 112

Query: 118 FISSSI-ENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CK 174
            I       L +L+ L L    +   P  AF    L+ L  L L +   +  + +    +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNN-PIESIPSYAFNR 169

Query: 175 LKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYC 233
           + SL  L L    KLE    G  E +  L+Y++L +  IK++P ++  L GL+EL M   
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN 228

Query: 234 YKLSKLPDN-LGSLRSLKRLHTGKSAISQLPS 264
               ++       L SLK+L    S +S +  
Sbjct: 229 -HFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 56/273 (20%), Positives = 94/273 (34%), Gaps = 22/273 (8%)

Query: 2   TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVV 61
            NL + +F L  L  D  +   + L   L      +         +  +           
Sbjct: 255 CNLTIEEFRLAYL--DYYLDDIIDLFNCLT----NVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 62  LNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFI 119
           L L   N +       +   LK +    S          + P+LE + L     +     
Sbjct: 309 LEL--VNCKFGQFPTLKLKSLKRLTF-TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 120 SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI--CKLKS 177
           S S     +L  L L    ++     F  L L  LE LD  H   L ++S       L++
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 422

Query: 178 LSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKE--LPSSVEHLEGLKELRMEYCY 234
           L +L + +         GI   ++ LE + +   + +E  LP     L  L  L +  C 
Sbjct: 423 LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 480

Query: 235 KLSKLPDN-LGSLRSLKRLHTGKSAISQLPSSI 266
           +L +L      SL SL+ L+   + +  +P  I
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 81  KLKSVDLCNSQNLTRMPDLS---ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137
           +L+ +D  +S  L +M + S      NL  + + +       +     L++L +L++ G 
Sbjct: 397 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GI 195
                F   I   L NL  LDL+ C+ L +LS +    L SL  L + +  +L+S P GI
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGI 513

Query: 196 LENMARLEYIDL 207
            + +  L+ I L
Sbjct: 514 FDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 45/263 (17%), Positives = 81/263 (30%), Gaps = 24/263 (9%)

Query: 37  LRYLHWHGYPLRTLPTNL------STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNS 90
           L +L      ++++               + L+L  + +  +     +  +L  + L N+
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 91  QNLTRMPDL-------SETPNLERMYLLNCTNLPFISSSI-ENLNNLSM--LRLEGCKIL 140
            +   +           E   L      N  NL     S  E L NL++   RL      
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMA 200
                 +   LTN+    L     + R+            L L NC     FP +   + 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVT-IERVK-DFSYNFGWQHLELVNCK-FGQFPTL--KLK 325

Query: 201 RLEYIDLRLTAIKELPSSVEHLEGLKELRMEYC--YKLSKLPDNLGSLRSLKRLHTGKSA 258
            L+ +           S V  L  L+ L +             +     SLK L    + 
Sbjct: 326 SLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 259 ISQLPSSIADLKQVDGLSFYGCR 281
           +  + S+   L+Q++ L F    
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 31/186 (16%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP 142
            +   C   N  ++P                 NLP          +   L L    +   
Sbjct: 10  ITYQ-CMELNFYKIP----------------DNLP---------FSTKNLDLSFNPLRH- 42

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCSKLESFPGILENMAR 201
             ++   S   L+VLDL+ C+ +  +       L  LS L L          G    ++ 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 202 LEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCY-KLSKLPDNLGSLRSLKRLHTGKSAI 259
           L+ +    T +  L +    HL+ LKEL + +   +  KLP+   +L +L+ L    + I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 260 SQLPSS 265
             +  +
Sbjct: 162 QSIYCT 167

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 28/247 (11%)

Query: 27  DQGLDYLPEE---LRYLHWHGYPLRTLPTNLST-DKLVVLNLPCSNVELLWEEKKEAFKL 82
           + GL  LPE    L  L      L  LP    +   L+V N     +  L         L
Sbjct: 80  NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LL 133

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP 142
           + + + N+Q L ++P+L  +  L+ + + N      +    +   +L  +     + L  
Sbjct: 134 EYLGVSNNQ-LEKLPELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQ-LEE 187

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARL 202
            P   +L    L  +   +    N L        SL  +   N   LE  P + +N+  L
Sbjct: 188 LPELQNL--PFLTAIYADN----NSLKKLPDLPLSLESIVAGNN-ILEELPEL-QNLPFL 239

Query: 203 EYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL 262
             I      +K LP     LE L          L+ LP+   SL  L       S +S+L
Sbjct: 240 TTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSEL 295

Query: 263 PSSIADL 269
           P ++  L
Sbjct: 296 PPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 34/258 (13%)

Query: 30  LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCN 89
           L  LP  L YL      L  LP   ++  L ++++  ++++ L +       L+ +   N
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGN 182

Query: 90  SQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISL 149
           +Q L  +P+L   P L  +Y  N      +    +   +L  +      +    P     
Sbjct: 183 NQ-LEELPELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILEEL-PEL--Q 234

Query: 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209
           +L  L  +   +   L  L      L++L+         L   P + +++  L+  +   
Sbjct: 235 NLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIF 289

Query: 210 TAIKELPSSVEHL--------------EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTG 255
           + + ELP ++ +L                L+EL +    KL +LP     L   +RL   
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRL---ERLIAS 345

Query: 256 KSAISQLPSSIADLKQVD 273
            + ++++P    +LKQ+ 
Sbjct: 346 FNHLAEVPELPQNLKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPE----ELRYLHWHGYPLRTLPTNLST 56
           + +             +    +    +  +  L +    +   L  +   L +LP     
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP- 91

Query: 57  DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--T 114
             L  L   C+++  L E  +    L   +     NL  + DL   P LE + + N    
Sbjct: 92  -HLESLVASCNSLTELPELPQSLKSLLVDNN----NLKALSDL--PPLLEYLGVSNNQLE 144

Query: 115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK 174
            LP     ++N + L ++ ++   +       +     +LE +   + + L  L   +  
Sbjct: 145 KLP----ELQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQ-LEELP-ELQN 193

Query: 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234
           L  L+ +   N   L+  P +  +   LE I      ++ELP  +++L  L  +  +   
Sbjct: 194 LPFLTAIYADNN-SLKKLPDLPLS---LESIVAGNNILEELPE-LQNLPFLTTIYADNN- 247

Query: 235 KLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLK 270
            L  LPD   SL +L       + + +LP S+  L 
Sbjct: 248 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 43/246 (17%), Positives = 91/246 (36%), Gaps = 34/246 (13%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF-----KLKSVDLCNSQNLTRMPDLSE 101
           +++     +       N P  N E               +   ++L N   L+ +P+   
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN-LGLSSLPE--L 89

Query: 102 TPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS----------- 150
            P+LE +   +C +L  +    ++L +L +       +    P    L            
Sbjct: 90  PPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 151 ---LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL 207
               + L+++D+ +    N L        SL ++   N  +LE  P + +N+  L  I  
Sbjct: 149 LQNSSFLKIIDVDN----NSLKKLPDLPPSLEFIAAGNN-QLEELPEL-QNLPFLTAIYA 202

Query: 208 RLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIA 267
              ++K+LP   +    L+ +       L +LP+ L +L  L  ++   + +  LP    
Sbjct: 203 DNNSLKKLP---DLPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP 257

Query: 268 DLKQVD 273
            L+ ++
Sbjct: 258 SLEALN 263

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 45/244 (18%), Positives = 96/244 (39%), Gaps = 31/244 (12%)

Query: 30  LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCN 89
           L  LP  L  +      L  LP   +   L  +    + ++ L         L+++++ +
Sbjct: 210 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL---PDLPPSLEALNVRD 266

Query: 90  SQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISL 149
           +  LT +P+L +  +L  + +        +S    NL  L+    E   +          
Sbjct: 267 NY-LTDLPELPQ--SLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSLCD-------- 314

Query: 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209
              +LE L++++ K L  L A   +L+ L          L   P + +N   L+ + +  
Sbjct: 315 LPPSLEELNVSNNK-LIELPALPPRLERLI---ASFN-HLAEVPELPQN---LKQLHVEY 366

Query: 210 TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL 269
             ++E P   E +E L+         L+++P+     ++LK+LH   + + + P     +
Sbjct: 367 NPLREFPDIPESVEDLRMNS-----HLAEVPE---LPQNLKQLHVETNPLREFPDIPESV 418

Query: 270 KQVD 273
           + + 
Sbjct: 419 EDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209
           ++ +      A  +          + + ++  RL +C              +   ++L  
Sbjct: 32  NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR-----------QAHELELNN 80

Query: 210 TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL 269
             +  LP    HLE    L    C  L++LP+   SL+SL   +    A+S LP  +  L
Sbjct: 81  LGLSSLPELPPHLE---SLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 81  KLKSVDLCNSQNLTR---MPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137
            L+ +DL  +    +         T +L+ + L     +  +SS+   L  L  L  +  
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS 406

Query: 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESF-PGIL 196
            +       + LSL NL  LD++H       +     L SL  L++   S  E+F P I 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 197 ENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLH 253
             +  L ++DL    +++L P++   L  L+ L M +      L       L SL+ L 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 4/163 (2%)

Query: 112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSAS 171
            C  L F         +   L L    +          S   L+VLDL+ C+       +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGA 71

Query: 172 ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRM 230
              L  LS L L          G    ++ L+ +    T +  L    + HL+ LKEL +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 231 EYCYKLS-KLPDNLGSLRSLKRLHTGKSAISQL-PSSIADLKQ 271
            +    S KLP+   +L +L+ L    + I  +  + +  L Q
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 49/271 (18%), Positives = 83/271 (30%), Gaps = 34/271 (12%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-LSTDKL 59
           +TNL  L     +L  + I S      + L  +P     L     P+  +        +L
Sbjct: 148 LTNLEHL-----DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 60  VVLNLPCSNVELLWEEKKEAFK----LKSVDLC----NSQNLTRMPDLSETPNLERMYLL 111
             L L   N        K   +    L+   L      ++      D S    L  + + 
Sbjct: 203 HKLTL--RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 112 NCT------NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRL 165
                     L  I      L N+S   L    I        +    +LE+++     + 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC----KF 316

Query: 166 NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL---RLTAIKELPSSVEHL 222
            +       LKSL  L   +     +F     ++  LE++DL    L+       S    
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 223 EGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
             LK L + +   +  +  N   L  L+ L 
Sbjct: 373 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 15/201 (7%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
            L  ++L +S  ++ +  LS   +L++   L+  N       + NL  L  L +   K+ 
Sbjct: 135 NLNRLEL-SSNTISDISALSGLTSLQQ---LSFGNQVTDLKPLANLTTLERLDISSNKVS 190

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMA 200
               + ++  LTNLE L   + + ++ ++  +  L +L  L L    +L+     L ++ 
Sbjct: 191 D--ISVLA-KLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLT 243

Query: 201 RLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260
            L  +DL    I  L   +  L  L EL++    ++S +   L  L +L  L   ++ + 
Sbjct: 244 NLTDLDLANNQISNLA-PLSGLTKLTELKLGAN-QISNIS-PLAGLTALTNLELNENQLE 300

Query: 261 QLPSSIADLKQVDGLSFYGCR 281
            +   I++LK +  L+ Y   
Sbjct: 301 DIS-PISNLKNLTYLTLYFNN 320

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 35/205 (17%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCK 138
           +     L    N+T     ++   +  +        ++      +E LNNL+ +     +
Sbjct: 25  EKMKTVL-GKTNVTDTVSQTDLDQVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQ 79

Query: 139 I--LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGIL 196
           +  + P       +LT L  + + + + +  ++  +  L +L+ L L+N  ++      L
Sbjct: 80  LTDITPLK-----NLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDIDP-L 130

Query: 197 ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK 256
           +N+  L  ++L    I ++ +    L GL  L+             L +L +L+RL    
Sbjct: 131 KNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 257 SAISQLPSSIADLKQVDGLSFYGCR 281
           + +S +   +A L  ++ L     +
Sbjct: 187 NKVSDIS-VLAKLTNLESLIATNNQ 210

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 15/198 (7%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCK 138
           KL  + L  +Q ++ +  L+    L  + L      ++      I NL NL+ L L    
Sbjct: 266 KLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNN 320

Query: 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198
           I    P  +S SLT L+ L   + K ++ +S S+  L +++WL   +  ++     +  N
Sbjct: 321 ISDISP--VS-SLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHN-QISDLTPL-AN 373

Query: 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258
           + R+  + L   A    P + +    +          L   P  +    S        + 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI-APATISDGGSYTEPDITWNL 432

Query: 259 ISQLPSSIADLKQVDGLS 276
            S          Q   + 
Sbjct: 433 PSYTNEVSYTFSQPVTIG 450

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 150 SLTNLEVLDLAHCKRLNRLS--ASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL 207
           +L       L        ++   S   L  ++ L+      ++S  G+ E +  L  I+ 
Sbjct: 22  ALAEKMKTVLGK----TNVTDTVSQTDLDQVTTLQADRL-GIKSIDGV-EYLNNLTQINF 75

Query: 208 RLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIA 267
               + ++   +++L  L ++ M    +++ +   L +L +L  L    + I+ +   + 
Sbjct: 76  SNNQLTDIT-PLKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLFNNQITDID-PLK 131

Query: 268 DLKQVDGLSFYGCR 281
           +L  ++ L      
Sbjct: 132 NLTNLNRLELSSNT 145

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 8/179 (4%)

Query: 81  KLKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI 139
            L+ +DL  + +L+ +P  L     L+++ L           S  N  +L+ L ++G   
Sbjct: 279 GLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 140 LGPFPAFISLSLTNLEVLDLAHCK--RLNRLSASICKLKSLSWLRLYNCSKLESFPGILE 197
                     +L NL  LDL+H      +  +  +  L  L  L L     L       +
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 198 NMARLEYIDLRLTAIKEL--PSSVEHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLH 253
              +LE +DL  T +K     S  ++L  LK L + +   L    +     L +L+ L+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 99  LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLD 158
           L    +L+ + L     L   + + +    L +L L   ++          +L  L+VL+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 159 LAHCKRLNRLSASICK-LKSLSWLRLYNCS---KLESFPGILENMARLEYIDLRLTAIKE 214
           L+H   L+  S  +   L +L  L L               L+ + RLE + L    +  
Sbjct: 432 LSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 215 LPSSV-EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI 266
           +       L+ +  + + +  +L+       S      L+   + IS +  S+
Sbjct: 491 IDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGIYLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 27/144 (18%), Positives = 41/144 (28%), Gaps = 2/144 (1%)

Query: 111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA 170
            NC NL          N+   L      +        S  L NL  LDL  C+       
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHED 75

Query: 171 SICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELR 229
           +      L  L L     +      L     L+++    T I  +      + + L+ L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 230 MEYCYKLSKLPDNLGSLRSLKRLH 253
           +   +  S           LK L 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLD 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 97  PDLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155
             L+  P L  +Y+    NL   I  +I  L  L  L +    + G  P F+S  +  L 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLV 128

Query: 156 VLDLAHCKRLNRLS----ASICKLKSLSWLRLYNCSKLESFPGILENMARL-EYIDL--- 207
            LD ++    N LS     SI  L +L  +         + P    + ++L   + +   
Sbjct: 129 TLDFSY----NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 208 RLTAIKELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLH 253
           RLT   ++P +  +L  L  + +     L        GS ++ +++H
Sbjct: 185 RLTG--KIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIH 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 119 ISSSIENLNNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLS----ASIC 173
           I SS+ NL  L+ L + G   L GP P  I+  LT L  L + H      +S      + 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITH----TNVSGAIPDFLS 122

Query: 174 KLKSLSWLRLYNCSKLESFPGILENMARLEYIDL---RLTAIKELPSSVEHLEGLKE-LR 229
           ++K+L  L     +   + P  + ++  L  I     R++    +P S      L   + 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMT 180

Query: 230 MEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFYG 279
           +       K+P    +L +L  +   ++ +           K    +    
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 150 SLTNLEVLDLAHCK--RLNRLSASICKLKSLSWLRLYNCSKLE-SFPGILENMARLEYID 206
               +  LDL+     +   + +S+  L  L++L +   + L    P  +  + +L Y+ 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 207 LRLTAIK-ELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKSAIS-QLP 263
           +  T +   +P  +  ++ L  L   Y   LS  LP ++ SL +L  +    + IS  +P
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 264 SSIADLKQ 271
            S     +
Sbjct: 167 DSYGSFSK 174

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 10/71 (14%)

Query: 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS----ASICK 174
            S    +  N   + L    +             NL  LDL +    NR+       + +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRN----NRIYGTLPQGLTQ 266

Query: 175 LKSLSWLRLYN 185
           LK L  L +  
Sbjct: 267 LKFLHSLNVSF 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 55  STDKLVVLNLPCSNVELLWEEKKEAF----KLKSVDLCNSQNLTRMPDLSETPNLERMYL 110
             DK+  ++L    + + +     +      L+S+ L NS     +     + +L  + L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 111 LNCT---NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR 167
              +    +  ++S + + + L  L +    +  P      L L +LEVLDL+     N 
Sbjct: 108 SRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA----NS 162

Query: 168 LSASI-------CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVE 220
           +S +             L  L +            +     LE++D+           + 
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLG 220

Query: 221 HLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLH 253
               L+ L +    KLS      + +   LK L+
Sbjct: 221 DCSALQHLDISGN-KLSGDFSRAISTCTELKLLN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS----ASICK 174
           I  ++ N + L  L L    + G  P+ +  SL+ L  L L      N L       +  
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWL----NMLEGEIPQELMY 464

Query: 175 LKSLSWLRLYNCSKLE-SFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEY 232
           +K+L  L L     L    P  L N   L +I L    +  E+P  +  LE L  L++  
Sbjct: 465 VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 233 CYKLS-KLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQ 271
               S  +P  LG  RSL  L    +  +  +P+++     
Sbjct: 524 N-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 33/185 (17%)

Query: 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS----ASICK 174
           I S + N  NL+ + L   ++ G  P +I   L NL +L L++    N  S    A +  
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSN----NSFSGNIPAELGD 536

Query: 175 LKSLSWLRL-------------YNCSKLES-------FPGILENMARLEYIDLRLTAIK- 213
            +SL WL L             +  S   +           ++N    +        ++ 
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 214 --ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLK 270
                  +  L       +              +  S+  L    + +S  +P  I  + 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 271 QVDGL 275
            +  L
Sbjct: 657 YLFIL 661

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 40/231 (17%)

Query: 81  KLKSVDLCNSQNLT-RMPDLSETPNLERMYL-------------LNCTNLPFI------- 119
            L+ +D+ ++ N +  +P L +   L+ + +               CT L  +       
Sbjct: 201 NLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 120 SSSI--ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS----ASIC 173
              I    L +L  L L   K  G  P F+S +   L  LDL+     N           
Sbjct: 260 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG----NHFYGAVPPFFG 315

Query: 174 KLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIK-ELPSSVEHL-EGLKELRM 230
               L  L L + +     P   L  M  L+ +DL       ELP S+ +L   L  L +
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 231 EYCYKLS-KLPDNLG--SLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSF 277
                 S  +  NL      +L+ L+   +  + ++P ++++  ++  L  
Sbjct: 376 SSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 87  LCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI--LGPFP 144
           +  S  + ++          +  L    ++    +    LN++  +      I  +    
Sbjct: 5   ITVSTPIKQIFPDDAFAETIKDNL-KKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQ 62

Query: 145 AFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEY 204
                 L N+  L L   K L  +   +  LK+L WL L    K++     L+++ +L+ 
Sbjct: 63  -----YLPNVTKLFLNGNK-LTDIK-PLTNLKNLGWLFLDEN-KIKDLSS-LKDLKKLKS 113

Query: 205 IDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264
           + L    I ++ + + HL  L+ L +    K++ +   L  L  L  L    + IS +  
Sbjct: 114 LSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDI-V 169

Query: 265 SIADLKQ 271
            +A L +
Sbjct: 170 PLAGLTK 176

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCK 138
           KLKS+ L     ++ +  L   P LE +YL N   T++    + +  L  L  L LE  +
Sbjct: 110 KLKSLSL-EHNGISDINGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQ 164

Query: 139 I--LGPFPAFISL-----------------SLTNLEVLDLAHCKRLNRLSASICKLKSLS 179
           I  + P      L                  L NL+VL+L   + LN+       L   +
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 180 WLRLYN 185
            ++  +
Sbjct: 225 TVKNTD 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 41/244 (16%)

Query: 43  HGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF----KLKSVDLCNSQNLTRMPD 98
               +  +P++L  +  + L    + + ++   +K AF     L+ +++  +  L  +  
Sbjct: 17  QESKVTEIPSDLPRN-AIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 99  --LSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155
              S  P L  + +    NL +I+    +NL NL  L +    I    P    +      
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKV 131

Query: 156 VLDLAHCKRLNRLSA-SICKLKS-LSWLRLYNCS-----------------------KLE 190
           +LD+     ++ +   S   L      L L                            LE
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 191 SFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSL 249
             P  +    +    +D+  T I  LPS    LE LK+LR    Y L KLP  L  L +L
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TLEKLVAL 248

Query: 250 KRLH 253
               
Sbjct: 249 MEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 36/215 (16%)

Query: 83  KSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKIL 140
           +    C    +T +P DL    N   +  +  T L  I         +L  + +    +L
Sbjct: 12  RVFL-CQESKVTEIPSDLP--RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK-LKSLSWLRLYNCSKLESFPG----- 194
               A +  +L  L  + +     L  ++    + L +L +L + N   ++  P      
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH 126

Query: 195 --------ILEN--------------MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEY 232
                   I +N                    + L    I+E+ +S  +   L EL +  
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 233 CYKLSKLPDN-LGSLRSLKRLHTGKSAISQLPSSI 266
              L +LP++          L   ++ I  LPS  
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 37/214 (17%)

Query: 83  KSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKI- 139
             +  CNS+ LT +P  +    +  R+ L +   L  +   + + L  L+ L L    + 
Sbjct: 10  TEIR-CNSKGLTSVPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 140 LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP--GILE 197
                +      T+L+ LDL+    +  +S++   L+ L  L   +   L+      +  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFL 123

Query: 198 NMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-------------- 242
           ++  L Y+D+  T  +   + +   L  L+ L+M           +              
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 243 -----------LGSLRSLKRLHTGKSAISQLPSS 265
                        SL SL+ L+   +    L + 
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 81  KLKSVDLCNSQNLTRMPDLS---ETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEG 136
           +L+ +D  +S  L +M + S      NL  + + +  +     + I   L++L +L++ G
Sbjct: 102 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAG 159

Query: 137 CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-G 194
                 F   I   L NL  LDL+ C +L +LS +    L SL  L + +     S    
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF 217

Query: 195 ILENMARLEYIDLRLTAIKELPSSV 219
             + +  L+ +D  L  I       
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 152 TNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNC--SKLESFPGILENMARLEYIDLRL 209
           ++   L+L   K  +       KL  L+ L L +   S              L+Y+DL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 210 TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN--LGSLRSLKRLHTGKSAISQLPSSI 266
             +  + S+   LE L+ L  ++   L ++ +     SLR+L  L    +      + I
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 16/179 (8%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCK 138
            + ++ L    ++  + D+ +    + + ++ C     P +     +L  L  L L   K
Sbjct: 286 NVSAMSL-AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-----DLPFLKSLTLTMNK 339

Query: 139 ILGPFPAFISLSLTNLEVLDLAHCK--RLNRLSASICKLKSLSWLRLYNCSKLESFPGIL 196
               F     ++L +L  LDL+          S S     SL  L L             
Sbjct: 340 GSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANF 395

Query: 197 ENMARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
             +  L+++D + + +K +   S+   LE L  L + Y             L SL  L 
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 7/183 (3%)

Query: 53  NLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLN 112
           +L T+ L  L+L  +   ++        +L+ +D  +S  L R+ + S   +LE++  L+
Sbjct: 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLD 430

Query: 113 CTNLPF---ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS 169
            +              L +L+ L++ G        + +  + TNL  LDL+ C+ L ++S
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQIS 489

Query: 170 ASICK-LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEH-LEGLKE 227
             +   L  L  L + + + L         +  L  +D     I+     ++H  + L  
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

Query: 228 LRM 230
             +
Sbjct: 550 FNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 127 NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNC 186
           ++   + L    +     ++   + + L+ LDL+ C+       +   L  LS L L   
Sbjct: 32  SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 187 SKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCY-KLSKLPDNLG 244
                 PG    +  LE +    T +  L S     L  LK+L + + +    KLP    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 245 SLRSLKRLHTGKSAISQLPSSI 266
           +L +L  +    + I  +  + 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 18/181 (9%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
            ++++ + + Q L   P ++ + ++      +   + FI         L  L L G    
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDM------SLNPIDFIQDQAFQGIKLHELTLRGNFNS 217

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS--------WLRLYNCSKLESF 192
                    +L  L V  L   +  +  +  I +   +           RL   +     
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 193 PGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRL 252
                 +A +  + L   +IK L    +H    + L +  C +L + P     L  LK L
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRC-QLKQFPTL--DLPFLKSL 333

Query: 253 H 253
            
Sbjct: 334 T 334

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 40/230 (17%), Positives = 94/230 (40%), Gaps = 27/230 (11%)

Query: 58  KLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TN 115
             + +    SNV      + +   + ++    +  +T +  +    NL  + L +   T+
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITD 77

Query: 116 LPFISSSIENLNNLSMLRLEGCKI--LGPFPAFISLSLTNLEVLDLAHCKRLNRLS--AS 171
           L    + ++NL  ++ L L G  +  +          L +++ LDL       +++    
Sbjct: 78  L----APLKNLTKITELELSGNPLKNVSAIA-----GLQSIKTLDLTS----TQITDVTP 124

Query: 172 ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME 231
           +  L +L  L L    ++ +    L  +  L+Y+ +    + +L + + +L  L  L+ +
Sbjct: 125 LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKAD 181

Query: 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281
              K+S +   L SL +L  +H   + IS + S +A+   +  ++     
Sbjct: 182 DN-KISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 24/195 (12%)

Query: 28  QGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDL 87
           +G+ YL   L  L      +  L    +  K+  L L  + ++ +         +K++DL
Sbjct: 57  EGVQYLNN-LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDL 114

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKI--LGPF 143
            ++Q +T +  L+   NL+ +YL     TN+    S +  L NL  L +   ++  L P 
Sbjct: 115 TSTQ-ITDVTPLAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSDLTPL 169

Query: 144 PAFISLSLTNLEVLDLAHCKRLNRLS--ASICKLKSLSWLRLYNCSKLESFPGILENMAR 201
                 +L+ L  L        N++S  + +  L +L  + L N  ++      L N + 
Sbjct: 170 A-----NLSKLTTLKADD----NKISDISPLASLPNLIEVHLKNN-QISDVSP-LANTSN 218

Query: 202 LEYIDLRLTAIKELP 216
           L  + L    I   P
Sbjct: 219 LFIVTLTNQTITNQP 233

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 15/177 (8%)

Query: 84  SVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILG 141
            +      NLT++P +      ER+ L       +   +SS   L  L +L L       
Sbjct: 7   RIAFYRFCNLTQVPQV--LNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPL 62

Query: 142 PFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNC--SKLESFPGILEN 198
                   +L NL +LDL    ++  L       L  L  LRLY C  S      G   N
Sbjct: 63  TIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 199 MARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
           +  L  +DL    I+ L    S   L  LK +      ++  + +    L  L+   
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCE--HELEPLQGKT 175

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 23/196 (11%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYL--LNCTNLPFISSSIENLNNLSMLRLEGCK 138
           KL+++DL ++     +  +   P++  ++L       LP I+ +   ++ LS  RLE   
Sbjct: 363 KLQTLDLRDNA----LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH-LSENRLENLD 417

Query: 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLS--ASICKLKSLSWLRLYNCS-----KLES 191
           IL        L + +L++L L    R +  S   +  +  SL  L L         + E 
Sbjct: 418 ILYFL-----LRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 192 FPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNLGSLRSLK 250
              + E ++ L+ + L    +  LP  V  HL  L+ L +    +L+ L  N     +L+
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND-LPANLE 529

Query: 251 RLHTGKSAISQLPSSI 266
            L   ++ +      +
Sbjct: 530 ILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 37  LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRM 96
           +    W           +S  +   L L    +   +        +K  D      L R 
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN----IKDPDQNTFAGLARS 266

Query: 97  PDLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155
                  ++  + L +   +  ++S + E L +L +L L   KI           L NL+
Sbjct: 267 -------SVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQ 317

Query: 156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL 215
           VL+L++       S++   L  ++++ L             + + +L+ +DLR  A+  +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 216 PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264
                 +  + ++ +    KL  LP    +   +         +  L  
Sbjct: 378 H----FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYF 421

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 28/209 (13%)

Query: 99  LSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLE 155
                 L R+ L      +L  +  S   LN+L  +     +I          L    L 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 156 VLDLAHCKRLNRLSASICKL------KSLSWLRLYNCSKLESFPGILEN----------- 198
              LA     +R+S    K         L  L +          G   N           
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 199 -MARLEYIDLRLTAIKELPSSV---EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLH 253
               +         IK+   +         ++ L + +   +  L      +L+ LK L+
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLN 296

Query: 254 TGKSAISQLPSSI-ADLKQVDGLSFYGCR 281
              + I+++       L  +  L+     
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNL 325

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 32/202 (15%), Positives = 73/202 (36%), Gaps = 17/202 (8%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
           KL+ ++L ++  L    DL     L  + L N   +      +    ++  L      I 
Sbjct: 59  KLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YV----QELLVGPSIETLHAANNNI- 111

Query: 141 GPFPAFISLS-LTNLEVLDLAHCKRLNRL-SASICKLKSLSWLRL-YNCSKLESFPGILE 197
               + +S S     + + LA+  ++  L          + +L L  N     +F  +  
Sbjct: 112 ----SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 198 NMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS 257
           +   LE+++L+   I ++   V     LK L +    KL+ +     S   +  +    +
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224

Query: 258 AISQLPSSIADLKQVDGLSFYG 279
            +  +  ++   + ++     G
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 103 PNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDL 159
              + +YL N   T L          + +  L L+  +I    F    + S   LE L+L
Sbjct: 120 QGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNL 176

Query: 160 AHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV 219
            +   +  +   +     L  L L +  KL       ++ A + +I LR   +  +  ++
Sbjct: 177 QYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233

Query: 220 EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279
              + L+   +                ++ +     K  + +L     +   V  L  YG
Sbjct: 234 RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA----SICK 174
           I    +N N   + ++    +     A +  S  N++ LDL+     N LS      +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSG----NPLSQISAADLAP 56

Query: 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234
              L  L L +   L     + E+++ L  +DL    ++EL         ++ L      
Sbjct: 57  FTKLELLNLSSN-VLYETLDL-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN- 109

Query: 235 KLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264
            +S++       +  K ++   + I+ L  
Sbjct: 110 NISRVS--CSRGQGKKNIYLANNKITMLRD 137

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 147 ISLSLTNLEVLDLAHCKRLNRLSASICK-LKSLSWLRLYNCSKLESFP-GILENMARLEY 204
           I  +    ++  +     L +  AS+ +   ++  L L     L       L    +LE 
Sbjct: 5   IKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLEL 62

Query: 205 IDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264
           ++L    + E    +E L  L+ L +     + +L        S++ LH   + IS++  
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNISRVSC 116

Query: 265 SI 266
           S 
Sbjct: 117 SR 118

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 43/240 (17%), Positives = 91/240 (37%), Gaps = 38/240 (15%)

Query: 47  LRTLPTNLST--DKLVVLNLPCSNVELLWEEKKEAF--KLKSVDLCNSQNLTRMPDLSET 102
           +     +  +  DK     LP  N        KE    +   + L N  NL+ +PD +  
Sbjct: 22  ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPD-NLP 79

Query: 103 PNLERMYLLNC--TNLPFISSSIENLN--------------NLSMLRLEGCKILGPFPAF 146
           P +  + +      +LP + +S+E L+              +L  L ++  ++       
Sbjct: 80  PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL-----TM 134

Query: 147 ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID 206
           +      LE ++  +  +L  L      L+ LS   + N  +L   P + E+   LE +D
Sbjct: 135 LPELPALLEYINADNN-QLTMLPELPTSLEVLS---VRNN-QLTFLPELPES---LEALD 186

Query: 207 LRLTAIKELPSSVEHLEGLKELRMEYCY---KLSKLPDNLGSLRSLKRLHTGKSAISQLP 263
           +    ++ LP+        +E  + +     +++ +P+N+ SL     +    + +S   
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 23/183 (12%)

Query: 89  NSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS 148
           N      +           + L N  NL  +  ++     +++L +     L   P    
Sbjct: 45  NRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNL--PPQITVLEITQNA-LISLPE--- 97

Query: 149 LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLR 208
               +LE LD     RL+ L      LK    L + N  +L   P   E  A LEYI+  
Sbjct: 98  -LPASLEYLDACDN-RLSTLPELPASLK---HLDVDNN-QLTMLP---ELPALLEYINAD 148

Query: 209 LTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIAD 268
              +  LP        L+ L +    +L+ LP+      SL+ L    + +  LP+    
Sbjct: 149 NNQLTMLPEL---PTSLEVLSVRNN-QLTFLPE---LPESLEALDVSTNLLESLPAVPVR 201

Query: 269 LKQ 271
              
Sbjct: 202 NHH 204

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 11/156 (7%)

Query: 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKS 177
           +S  +   NN S+ +      +    A    +    E   L    R   +S    C +  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237
            S L+L     L S P  L    ++  +++   A+  LP     LE L         +LS
Sbjct: 61  FSELQLNRL-NLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDN----RLS 113

Query: 238 KLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVD 273
            LP+   SL+ L   +   + ++ LP   A L+ ++
Sbjct: 114 TLPELPASLKHLDVDN---NQLTMLPELPALLEYIN 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 22/190 (11%)

Query: 87  LCNSQNLTRMPD--LSETPNLERMYLLNCTNLPFISSSIE-NLNNLSMLRLEGCKILGPF 143
                 ++       S     E+  L        +S   E  +N  S L+L     L   
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSL 74

Query: 144 PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLE 203
           P  +      + VL++     L  L      L+ L         +L + P +  ++  L 
Sbjct: 75  PDNL---PPQITVLEITQN-ALISLPELPASLEYLDACDN----RLSTLPELPASLKHL- 125

Query: 204 YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP 263
             D+    +  LP     LE    +  +   +L+ LP+   SL  L   +     ++ LP
Sbjct: 126 --DVDNNQLTMLPELPALLE---YINADNN-QLTMLPELPTSLEVLSVRNN---QLTFLP 176

Query: 264 SSIADLKQVD 273
                L+ +D
Sbjct: 177 ELPESLEALD 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 15/175 (8%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKI- 139
             ++    Q+ T     ++  +L  + L N   T+L    + IE  +N+  L +      
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL----TGIEYAHNIKDLTINNIHAT 79

Query: 140 -LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198
              P        L+NLE L +      +    ++  L SL+ L + + +  +S    +  
Sbjct: 80  NYNPIS-----GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
           + ++  IDL           ++ L  LK L +++   +      +     L +L+
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDY-RGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 20/200 (10%)

Query: 85  VDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFP 144
             L  SQ+   +PD       +             + +   +N+L+ + L    +     
Sbjct: 6   TGLKASQDNVNIPD----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV----- 56

Query: 145 AFISLS----LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMA 200
               L+      N++ L + +       +  I  L +L  LR+            L  + 
Sbjct: 57  --TDLTGIEYAHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 201 RLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI 259
            L  +D+  +A  +   + +  L  +  + + Y   ++ +   L +L  LK L+     +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 260 SQLPSSIADLKQVDGLSFYG 279
                 I D  +++ L  + 
Sbjct: 172 HDY-RGIEDFPKLNQLYAFS 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 20/222 (9%)

Query: 35  EELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLT 94
            E    +     +    T    + +  +    S+++ + +  +    +  + L N   LT
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFL-NGNKLT 81

Query: 95  RMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKI--LGPFPAFISLS 150
            +  L+   NL  ++L      +L    SS+++L  L  L LE   I  +          
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL----SSLKDLKKLKSLSLEHNGISDINGLV-----H 132

Query: 151 LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLT 210
           L  LE L L + K +  ++  + +L  L  L L +  ++      L  + +L+ + L   
Sbjct: 133 LPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188

Query: 211 AIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRL 252
            I +L  ++  L+ L  L +     L+K  ++  +L     +
Sbjct: 189 HISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 42/244 (17%), Positives = 90/244 (36%), Gaps = 23/244 (9%)

Query: 33  LPEELRYLHWHGYPLRTLPTN--LSTDKLVVLNLPCSNVELLWEEKKEAF----KLKSVD 86
           LP +   L      +  +      +   L  L L  + +  +      AF    KL+ + 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI---SPGAFAPLVKLERLY 106

Query: 87  LCNSQNLTRMPDLSETP-NLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKI-LGPF 143
           L  +Q L  +P   + P  L+ + +     +  +  S+   LN + ++ L    +     
Sbjct: 107 LSKNQ-LKELP--EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 144 PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARL 202
                  +  L  + +A    +  +   +    SL+ L L    K+       L+ +  L
Sbjct: 163 ENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNL 218

Query: 203 EYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ 261
             + L   +I  + +    +   L+EL +    KL K+P  L   + ++ ++   + IS 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA 277

Query: 262 LPSS 265
           + S+
Sbjct: 278 IGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 49/239 (20%), Positives = 102/239 (42%), Gaps = 31/239 (12%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK----LKSVDLCNSQNLTRMPD--LS 100
           L  +P +L  D   +L+L  + +  +   K   FK    L ++ L N++ ++++     +
Sbjct: 43  LEKVPKDLPPD-TALLDLQNNKITEI---KDGDFKNLKNLHTLILINNK-ISKISPGAFA 97

Query: 101 ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160
               LER+YL +   L  +   +     L  LR+   +I       +   L  + V++L 
Sbjct: 98  PLVKLERLYL-SKNQLKELPEKM--PKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELG 153

Query: 161 HCKRLNRLSASI------CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE 214
                N L +S         +K LS++R+ +   + + P  L     L  + L    I +
Sbjct: 154 T----NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITK 206

Query: 215 LPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAISQLPSSIADLKQ 271
           + ++  + L  L +L + +   +S + +  L +   L+ LH   + + ++P  +AD K 
Sbjct: 207 VDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS--ASICKLKSL 178
           S++     +  L      I              L +L L H    N L+  A +     L
Sbjct: 199 STLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQH----NNLTDTAWLLNYPGL 250

Query: 179 SWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237
             + L    +LE         M RLE + +    +  L    + +  LK L + +   L 
Sbjct: 251 VEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLL 308

Query: 238 KLPDNLGSLRSLKRLHTGKSAISQLPSSI 266
            +  N      L+ L+   ++I  L  S 
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 98  DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL 157
           +L        +++   T   +       LNN  ++  +   +    PA +  S   +E+L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELL 74

Query: 158 DLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKEL 215
           +L   + +  +         ++  L +     +   P  + +N+  L  + L    +  L
Sbjct: 75  NLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 216 PSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAISQLPSS 265
           P  +  +   L  L M     L ++ D+   +  SL+ L    + ++ +  S
Sbjct: 133 PRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 25/163 (15%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 95  RMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL 154
            +  L+    +E +   +  ++  +   +     L++L+L+   +       ++     L
Sbjct: 197 LLSTLAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQHNNLT-DTAWLLNY--PGL 250

Query: 155 EVLDLAHCKRLNRLSA----SICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLT 210
             +DL++    N L         K++ L  L + N ++L +     + +  L+ +DL   
Sbjct: 251 VEVDLSY----NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN 305

Query: 211 AIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
            +  +  +    + L+ L +++   +  L   L +  +LK L 
Sbjct: 306 HLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 29/211 (13%)

Query: 81  KLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEG 136
            L  + L  +  L+ +P      TP L  + + N     +     + +   +L  L+L  
Sbjct: 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSS 174

Query: 137 CKILG-PFPAFISL--------------SLTNLEVLDLAHCKRLNRLSASICKLKSLSWL 181
            ++         SL                  +E LD +H   +N +   +     L+ L
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRGPV--NVELTIL 231

Query: 182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLP 240
           +L +   L      L N   L  +DL    ++++       ++ L+ L +    +L  L 
Sbjct: 232 KLQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN 288

Query: 241 DNLGSLRSLKRLHTGKSAISQLPSSIADLKQ 271
                + +LK L    + +  +  +     +
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILENMA 200
           +  F  ++L N +++   +   + +L A++    + +  L L +  ++E           
Sbjct: 36  YFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAH 93

Query: 201 RLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNL-GSLRSLKRLHTGKSA 258
            ++ + +   AI+ LP  V +++  L  L +E    LS LP  +  +   L  L    + 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 259 ISQLPSSI 266
           + ++    
Sbjct: 153 LERIEDDT 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 13/185 (7%)

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILGPFPA 145
             +Q++    +     N + +   N     LP  ++ +++   + +L L   +I      
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEE-IDT 92

Query: 146 FISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILENMARLE 203
           +       ++ L +     +  L   +   +  L+ L L     L S P GI  N  +L 
Sbjct: 93  YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 150

Query: 204 YIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL 262
            + +    ++ +     +    L+ L++    +L+ +   L  + SL   +   + +S L
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTL 207

Query: 263 PSSIA 267
              IA
Sbjct: 208 AIPIA 212

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 23/160 (14%), Positives = 65/160 (40%), Gaps = 12/160 (7%)

Query: 95  RMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL 154
            +  L+    +E +   +  ++  +   +     L++L+L+   +       ++     L
Sbjct: 203 LLSTLAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQHNNLT-DTAWLLNY--PGL 256

Query: 155 EVLDLAHCKRLNRLSASICK-LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK 213
             +DL++   L ++       ++ L  L + N ++L +     + +  L+ +DL    + 
Sbjct: 257 VEVDLSYN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLL 314

Query: 214 ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
            +  +    + L+ L +++   +  L   L +  +LK L 
Sbjct: 315 HVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 9/159 (5%)

Query: 114 TNLPFISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCKRLNRLSAS 171
              P       NL    +       +     +  F  ++L N +++   +   + +L A+
Sbjct: 11  PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAA 69

Query: 172 I-CKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSV-EHLEGLKEL 228
           +    + +  L L +  ++E            ++ + +   AI+ LP  V +++  L  L
Sbjct: 70  LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 229 RMEYCYKLSKLPDNL-GSLRSLKRLHTGKSAISQLPSSI 266
            +E    LS LP  +  +   L  L    + + ++    
Sbjct: 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 30/225 (13%)

Query: 50  LPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR--MPDLSETPNLER 107
           +   L +  ++    P S ++    E    F+++ +DL NS          LS+   L+ 
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122

Query: 108 MYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLN 166
           + L        I +++   +NL  L L GC          +  S + L+ L+L+ C    
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182

Query: 167 -----RLSASICKLKSLSWLRLYNCSKL---ESFPGILENMARLEYIDLR---------L 209
                   A + +  +++ L L    K         ++     L ++DL           
Sbjct: 183 EKHVQVAVAHVSE--TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240

Query: 210 TAIKELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLH 253
               +L         L+ L +  CY +  +    LG + +LK L 
Sbjct: 241 QEFFQLNY-------LQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 13/179 (7%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP 142
           +++DL        +     +  +             ++        +  + L    I   
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 108

Query: 143 FPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL--ESFPGILENMA 200
               I    + L+ L L   +  + +  ++ K  +L  L L  CS     +   +L + +
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 201 RLEYIDL----RLTAIKELPSSVEHLEGLKELRMEYCYK------LSKLPDNLGSLRSL 249
           RL+ ++L      T      +     E + +L +    K      LS L     +L  L
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 81  KLKSVDLCNSQNLT----RMPDLSETPNLERMYLLNCTNL---PFISSSIENLNNLSMLR 133
           +L  ++L    + T    ++     +  + ++ L           +S+ +    NL  L 
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 134 LEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSWLRLYNCSKLESF 192
           L    +L          L  L+ L L+ C  +   +   + ++ +L  L+++      + 
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 288

Query: 193 PGILENMARLEYIDLRLTAI 212
             + E +  L+      T I
Sbjct: 289 QLLKEALPHLQINCSHFTTI 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 38/252 (15%), Positives = 95/252 (37%), Gaps = 23/252 (9%)

Query: 47  LRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF----KLKSVDLCNSQNLTRMPD--LS 100
           L ++P+ L+   +  L+L  + +  +             L+++ L ++  +  + +   S
Sbjct: 43  LNSIPSGLTEA-VKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSNG-INTIEEDSFS 97

Query: 101 ETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL 159
              +LE + L     L  +SSS  + L++L+ L L G          +   LT L++L +
Sbjct: 98  SLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 160 AHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218
            +     ++       L  L  L +         P  L+++  + ++ L +     L   
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 219 V-EHLEGLKELRMEY----CYKLSKLP----DNLGSLRSLKRLHTGKSAISQLPSSIADL 269
             +    ++ L +       +  S+L     ++L    + + +     ++ Q+   +  +
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 270 KQVDGLSFYGCR 281
             +  L F   +
Sbjct: 277 SGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 15/189 (7%)

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSMLRLEGCKILG-PFPA 145
            +S +L  +P    T  ++ + L N   + +IS+S  +   NL  L L    I      +
Sbjct: 38  GSSGSLNSIPS-GLTEAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 146 FISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP--GILENMARL 202
           F   SL +LE LDL++   L+ LS+S    L SL++L L      ++     +  ++ +L
Sbjct: 96  F--SSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKL 151

Query: 203 EYIDL-RLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAI 259
           + + +  +    ++       L  L+EL ++    L       L S++++  L       
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 260 SQLPSSIAD 268
             L     D
Sbjct: 211 ILLLEIFVD 219

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 26/161 (16%), Positives = 64/161 (39%), Gaps = 15/161 (9%)

Query: 81  KLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGC 137
           KL+ + + N    T++     +    LE + +    +L      S++++ N+S L L   
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMK 208

Query: 138 KILGPFPAFISLSLTNLEVLDLAH----CKRLNRLSA----SICKLKSLSWLRLYNCSKL 189
           + +           +++E L+L          + LS     S+ K  +   +++     L
Sbjct: 209 QHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-TDESL 266

Query: 190 ESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELR 229
                +L  ++ L  ++     +K +P  + + L  L+++ 
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKIL 140
            +   C ++ L ++P+L    ++  + L       L    +S   L +L  L++E     
Sbjct: 13  YNAI-CINRGLHQVPELP--AHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPG 67

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESF---PGIL 196
                     L++L +L L + +   +L       L +L  L L  C  L+         
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFF 125

Query: 197 ENMARLEYIDLRLTAIKEL-PSSV-EHLEGLKELR 229
           + +  LE + LR   IK++ P+S   ++     L 
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 23/199 (11%)

Query: 104 NLERMYLLNCTNLPFISSSIEN---LNNLSMLRLEGCKI--LGPFPAFISLSLTNLEVLD 158
            L  + L +            N     +++ L L G           F +++ T ++ L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 159 LAHC------------KRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARLEYI 205
           L++             K  +  +    +   +    L   SK+ +    +  +   LE +
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQL 304

Query: 206 DLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNL-GSLRSLKRLHTGKSAISQLP 263
            L    I ++  +    L  L +L +     L  +   +  +L  L+ L    + I  L 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALG 363

Query: 264 SSI-ADLKQVDGLSFYGCR 281
                 L  +  L+    +
Sbjct: 364 DQSFLGLPNLKELALDTNQ 382

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 40/244 (16%), Positives = 98/244 (40%), Gaps = 24/244 (9%)

Query: 33  LPEELRYLHWHGYPLRTLPTN--LSTDKLVVLNLPCSNVELLWEEKKEAF----KLKSVD 86
           +  +   L      +  L  +       L  L L  + +  +    ++AF    KL+ + 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI---HEKAFSPLRKLQKLY 108

Query: 87  LCNSQNLTRMPDLSETP-NLERMYLLNC--TNLPFISSSIENLNNLSMLRLEGCKILGPF 143
           +  +  L  +P     P +L  + + +     +P        L N++ + + G  +    
Sbjct: 109 ISKNH-LVEIP--PNLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSG 163

Query: 144 PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARL 202
               +     L  L ++   +L  +   +   ++L+ L L + +K+++     L   ++L
Sbjct: 164 FEPGAFDGLKLNYLRISEA-KLTGIPKDL--PETLNELHLDH-NKIQAIELEDLLRYSKL 219

Query: 203 EYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ 261
             + L    I+ + +     L  L+EL ++   KLS++P  L  L+ L+ ++   + I++
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITK 278

Query: 262 LPSS 265
           +  +
Sbjct: 279 VGVN 282

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 34/196 (17%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYL------------------LNCTNLPFISSS 122
           KL+ ++L ++  L    DL     L  + L                      N+  +S S
Sbjct: 59  KLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 123 IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-----ASICKLKS 177
                    + L   KI            + ++ LDL      N +             +
Sbjct: 118 R--GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDT 170

Query: 178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237
           L  L L     +    G +   A+L+ +DL    +  +    +   G+  + +    KL 
Sbjct: 171 LEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLV 227

Query: 238 KLPDNLGSLRSLKRLH 253
            +   L   ++L+   
Sbjct: 228 LIEKALRFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 8/189 (4%)

Query: 81  KLKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI 139
           KLK++DL +++ L  M         +  + L N   L  I  ++    NL    L G   
Sbjct: 192 KLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249

Query: 140 LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE-SFPGILEN 198
                         ++ +     K+L   +   C + +L     Y C  L   F   L  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 199 M--ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGS-LRSLKRLHTG 255
           +       +  + +  + L    E+    +E+      +   + D +    ++   L   
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQK 368

Query: 256 KSAISQLPS 264
           K A+ +  S
Sbjct: 369 KKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 29/200 (14%), Positives = 63/200 (31%), Gaps = 18/200 (9%)

Query: 72  LWEEKKEAFKLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNCTNLPFISSSIENLNNL 129
           + E K+   + K   + +S  L +          N++ + L         ++ +     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 130 SMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL 189
            +L L    +          SL+ L  LDL +    N +   +    S+  L   N   +
Sbjct: 61  ELLNLSSNVLYE-TLDL--ESLSTLRTLDLNN----NYVQ-ELLVGPSIETLHAANN-NI 111

Query: 190 ESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN--LGSL 246
                        + I L    I  L          ++ L ++   ++  +       S 
Sbjct: 112 SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASS 168

Query: 247 RSLKRLHTGKSAISQLPSSI 266
            +L+ L+   + I  +   +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQV 188

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 37/197 (18%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI- 139
            L S+D C++ ++T M  + +   L +   L CT+    +  +    NL+ L  +  K+ 
Sbjct: 43  TLTSLD-CHNSSITDMTGIEKLTGLTK---LICTSNNITTLDLSQNTNLTYLACDSNKLT 98

Query: 140 ---LGPFPAFISLSLTN--LEVLDLAHCKRLNRLSAS--------ICKLKSLSWLRLYNC 186
              + P      L+     L  LD++    L  L+ +        +     L+ L  +  
Sbjct: 99  NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 187 SKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSL 246
            K+      +    +L  +D     I EL   V   + L  L  +    ++KL   L   
Sbjct: 159 KKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD--LNQN 211

Query: 247 RSLKRLHTGKSAISQLP 263
             L  L    + ++++ 
Sbjct: 212 IQLTFLDCSSNKLTEID 228

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
           +L  +D C+        D++    L     L+C+        +     L+ L  +   I 
Sbjct: 149 QLTELD-CHLNKKITKLDVTPQTQLTT---LDCSFNKITELDVSQNKLLNRLNCDTNNI- 203

Query: 141 GPFPAFISLS-LTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFPGILEN 198
                 + L+    L  LD +     N+L+   +  L  L++        L      +  
Sbjct: 204 ----TKLDLNQNIQLTFLDCSS----NKLTEIDVTPLTQLTYFDCSVN-PLTELD--VST 252

Query: 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258
           +++L  +    T + E+  +  H   L   + E C K+ +L  ++     L  L    + 
Sbjct: 253 LSKLTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAG 308

Query: 259 ISQLP 263
           I++L 
Sbjct: 309 ITELD 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 24/194 (12%)

Query: 103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI--LGPFPAFISL-----SLTNLE 155
            N               + S E L  L+ L      I  +        L     +  N+ 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77

Query: 156 VLDLAHCKRLNRLSAS--------ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL 207
            LDL+    L  L+          +  L  L++L      KL      +     L Y++ 
Sbjct: 78  TLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNC 134

Query: 208 RLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIA 267
               + E+   V H   L EL      K++KL   +     L  L    + I++L   ++
Sbjct: 135 ARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD--VS 188

Query: 268 DLKQVDGLSFYGCR 281
             K ++ L+     
Sbjct: 189 QNKLLNRLNCDTNN 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 42/193 (21%)

Query: 83  KSVDLCNSQNLTRMPDL--SETPNLERMYLLNCTNLPFISSSI--ENLNNLSMLRLEGCK 138
             +  C+ Q L  +P    S T  L+    L+  NL  + +      L NL  L L    
Sbjct: 21  NILS-CSKQQLPNVPQSLPSYTALLD----LSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 139 ILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILE 197
           +      AF+ +   NL  LDL+              L +L                +  
Sbjct: 76  LNFISSEAFVPV--PNLRYLDLSSNH-----------LHTLDE-------------FLFS 109

Query: 198 NMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLP----DNLGSLRSLKRL 252
           ++  LE + L    I  +  +  E +  L++L +    ++S+ P     +   L  L  L
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168

Query: 253 HTGKSAISQLPSS 265
               + + +LP +
Sbjct: 169 DLSSNKLKKLPLT 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 36/193 (18%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETP-NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI 139
              SVD C+S+ LT +P  S  P + +++ L                N LS L       
Sbjct: 17  NKNSVD-CSSKKLTAIP--SNIPADTKKLDL--------------QSNKLSSL------- 52

Query: 140 LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCSKLESFP-GILE 197
             P  AF  L  T L +L L +  +L  L A I  +LK+L  L + +  KL++ P G+ +
Sbjct: 53  --PSKAFHRL--TKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD 106

Query: 198 NMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNL-GSLRSLKRLHTG 255
            +  L  + L    +K LP  V + L  L  L + Y  +L  LP  +   L SLK L   
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLY 165

Query: 256 KSAISQLPSSIAD 268
            + + ++P    D
Sbjct: 166 NNQLKRVPEGAFD 178

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 81  KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI- 139
                +L   Q++T +    E   ++     + +N+  ++  ++   NL  L L   +I 
Sbjct: 20  NAVKQNL-GKQSVTDLVSQKELSGVQNFNG-DNSNIQSLAG-MQFFTNLKELHLSHNQIS 76

Query: 140 -LGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198
            L P        LT LE L +   + L  L+        LS L L N  +L      L +
Sbjct: 77  DLSPLK-----DLTKLEELSVNRNR-LKNLNG--IPSACLSRLFLDNN-ELRDTDS-LIH 126

Query: 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258
           +  LE + +R   +K +   +  L  L+ L +    +++     L  L+ +  +      
Sbjct: 127 LKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183

Query: 259 ISQLP 263
               P
Sbjct: 184 CVNEP 188

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 29/202 (14%), Positives = 71/202 (35%), Gaps = 33/202 (16%)

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFI 147
              +++ R+P L   P+ + + L+                +L  +         P  AF 
Sbjct: 18  VTCKDIQRIPSLP--PSTQTLKLIE--------------THLRTI---------PSHAFS 52

Query: 148 SLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILENMARLEYI 205
           +L   N+  + ++    L +L +     L  ++ + + N   L       L+ +  L+++
Sbjct: 53  NL--PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110

Query: 206 DLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLPDNL--GSLRSLKRLHTGKSAISQ 261
            +  T +K  P  + V   +    L +     ++ +P N   G       L    +  + 
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

Query: 262 LPSSIADLKQVDGLSFYGCRGL 283
           +     +  ++D +     + L
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYL 192

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 25/203 (12%)

Query: 78  EAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNL---------------PFISSS 122
           E +  + V + N   ++    +   P +  + L    +                P+I + 
Sbjct: 41  ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM 100

Query: 123 IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR--LSASICKLKSLSW 180
             +   L  +RL+   +       I+ S  N +VL L+ C+  +   L+A     ++L  
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 181 LRLYNCSK----LESFPGILENMARLEYIDLRLTAIKELPSSVEHL----EGLKELRMEY 232
           L L                 +    L  +++   A +   S++E L      LK L++  
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 233 CYKLSKLPDNLGSLRSLKRLHTG 255
              L KL   L     L+ L TG
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTG 243

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 103 PNLERMYLLNCTNL--PFISSSIENLNNLSMLRLEGCKIL---GPFPAFISLSLTNLEVL 157
            N + + L +C       +++      NL  L L    +    G + +    + T+L  L
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189

Query: 158 DLAHCKR------LNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL---- 207
           +++          L RL      LKSL    L     LE    +L+   +LE +      
Sbjct: 190 NISCLASEVSFSALERLVTRCPNLKSLK---LNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 208 ---RLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
              R      L  ++   + L+ L   +    + LP        L  L+
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 35/190 (18%)

Query: 82  LKSVDLCNSQNLTRMPDLSETP-NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL 140
              V+ C+ +NLT +P   + P +   ++L              + N L           
Sbjct: 12  HLEVN-CDKRNLTALP--PDLPKDTTILHL--------------SENLLYTF-------- 46

Query: 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMA 200
                   +  T L  L+L   + L +L      L  L  L L +  +L+S P + + + 
Sbjct: 47  ---SLATLMPYTRLTQLNLDRAE-LTKLQVDG-TLPVLGTLDLSHN-QLQSLPLLGQTLP 100

Query: 201 RLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNL-GSLRSLKRLHTGKSA 258
            L  +D+    +  LP      L  L+EL ++   +L  LP  L      L++L    + 
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 259 ISQLPSSIAD 268
           +++LP+ + +
Sbjct: 160 LTELPAGLLN 169

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 10/220 (4%)

Query: 62  LNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISS 121
             L     E    +     +L   +L   ++     +L     L+ +   N   L  I  
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 122 SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL 181
            +  L+ L   +    + L  F    ++       LD    K L   S    +   +  L
Sbjct: 391 LMRALDPLLYEK----ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD 241
            L +   L      LE +  + ++DL    ++ LP ++  L  L+ L+      L  +  
Sbjct: 447 HLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD- 502

Query: 242 NLGSLRSLKRLHTGKSAISQLPS--SIADLKQVDGLSFYG 279
            + +L  L+ L    + + Q  +   +    ++  L+  G
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 20/239 (8%)

Query: 2   TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTD--KL 59
           T +         L+G        +    L    + L              + +      +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSL----KALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 60  VVLNLPCSNVELLWEEKKEAF-KLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNC--T 114
            + N   S   ++             +D  N+  LT            LE + L      
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLK 361

Query: 115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-- 172
            L  I+     + +L  L +    +             +L  L+++     N L+ +I  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS----NILTDTIFR 417

Query: 173 CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRM 230
           C    +  L L++  K++S P  +  +  L+ +++    +K +P  + + L  L+++ +
Sbjct: 418 CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 7/147 (4%)

Query: 111 LNCTNLPFISS-SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHC--KRLNR 167
              +    +       ++    L       L          LT LE L L     K L++
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 168 LSASICKLKSLSWLRLY-NCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLK 226
           ++    ++KSL  L +  N    +   G       L  +++    + +          +K
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIK 424

Query: 227 ELRMEYCYKLSKLPDNLGSLRSLKRLH 253
            L +    K+  +P  +  L +L+ L+
Sbjct: 425 VLDLHSN-KIKSIPKQVVKLEALQELN 450

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 88  CNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSS-IENLNNLSMLRLEGCKILGPFPAF 146
            +   L  +P    +     + + +   +  + +S I +L+ L +L +   +I       
Sbjct: 7   RSKNGLIHVPKDL-SQKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQY-LDIS 63

Query: 147 ISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFP--GILENMARLE 203
           +      LE LDL+H    N+L   S     +L  L L      ++ P      NM++L+
Sbjct: 64  VFKFNQELEYLDLSH----NKLVKISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQLK 118

Query: 204 YIDLRLTAIKELP-SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
           ++ L  T +++     + HL   K L      +     ++   L+      
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVL--LVLGETYGEKEDPEGLQDFNTES 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 43/292 (14%), Positives = 100/292 (34%), Gaps = 43/292 (14%)

Query: 3   NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPE-ELRYLHWHGYPLRTLPT--NLSTDKL 59
           +L++    + +L   P     V ++  ++ L   +L  +  +    + L T  +  T   
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 60  VVLNLPCSNVELLWEEKKEAFK---------LKSVDLCNSQNLTRMPDLSETPNLERMYL 110
            +LN+   ++E  W+   + F+         L   +L  ++ + R         L+ + +
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 111 LNCTNLPFISSSI---ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR 167
            +  N  F+ S          +++  L               S ++   L+       + 
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 168 LSASICKLKSLSWLRLYN--CSKLESFPGILENMARLEYIDLRLTAIK--------ELPS 217
           +      LK L  L L             + +NM+ LE +D+ L ++             
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428

Query: 218 SVEHL----------------EGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253
           S+  L                  +K L +    ++  +P ++  L++L+ L+
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELN 479

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 46/179 (25%)

Query: 83  KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENL----NNLSMLRLEGCK 138
            +   C   N  ++P                 NLP    S +NL    N L  L      
Sbjct: 10  ITYQ-CMELNFYKIP----------------DNLP---FSTKNLDLSFNPLRHL------ 43

Query: 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCSKLESFP-GIL 196
                 +F   S   L+VLDL+ C+ +  +       L  LS L L   + ++S   G  
Sbjct: 44  ---GSYSF--FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAF 96

Query: 197 ENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLP-----DNLGSLRSL 249
             ++ L+ +    T +  L +    HL+ LKEL + +   +          NL +L  L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHL 154

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 21/156 (13%)

Query: 97  PDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS-LTNLE 155
           P L   P L  + +    NL           NL  L +    +       I  S L NLE
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 156 VLDLAHCKRLNRLSASI---------CKLKSLSWLRLYNCSKLESFPGIL---ENMARLE 203
            L L            +          +  +L WL + +  +      +    + + +LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 204 YIDLRLTAI-----KELPSSVEHLEGLKELRMEYCY 234
            +D+    +     + L   V+ ++ LK + M+Y Y
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 88  CNSQNLTRMP-DLSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKI--LGPF 143
           C           L    NL  +Y+ N  +L  +    +  L  L  L +    +  + P 
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 144 PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN 185
            AF       L  L+L+    L  LS    +  SL  L L  
Sbjct: 75  -AF--HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 111 LNCTNLPFISS--SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRL 168
           L CT    + S   +    NL+ L +E  + L          L  L  L +     L  +
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFV 71

Query: 169 SASI-CKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL 207
           +         LS L L     LES          L+ + L
Sbjct: 72  APDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVL 110

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 26/222 (11%)

Query: 58  KLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLERMYLLNCTNL 116
            LV + +    +  L    K A  L+     +      MP+         ++  L  + +
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 117 --PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK 174
               +         +  L L    +       +     NLEVL+  +      L      
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340

Query: 175 LKSLSWLRLYNCSKLESFPG------------ILENMARLEYIDL---RLT--AIKELPS 217
            K L  LR+   +  +                + +    LEY+ +    +T  +++ + +
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400

Query: 218 SVEHLEGLKELRMEYCYKLSKLPDNLG------SLRSLKRLH 253
            +++L   + + ++   +++ LP + G        + L+R  
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 44/311 (14%), Positives = 89/311 (28%), Gaps = 95/311 (30%)

Query: 25  HLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKS 84
           H    +D+   E +Y     Y    L          V N  C +V+   +  K     + 
Sbjct: 2   HHHHHMDFETGEHQY----QYK-DILSVFEDA---FVDNFDCKDVQ---DMPKSILSKEE 50

Query: 85  VDLCNSQNLTRMPDLSETPNLERMY-LLNC------------------TNLPFISSSIEN 125
           +D     ++    D      +     L                      N  F+ S I+ 
Sbjct: 51  ID-----HIIMSKD-----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 126 LNN---LSMLRLEGC--KILGPFPAFISLSLTNLE-VLDLAHC-KRLNR----------- 167
                 +          ++      F   +++ L+  L L      L             
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 168 -----LSASICKLKSLS--------WLRLYNCSKLESFPGILENMARLEY-IDLRLTAIK 213
                ++  +C    +         WL L NC+  E+   +LE + +L Y ID   T+  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLEMLQKLLYQIDPNWTSRS 217

Query: 214 ELPSSVEH-LEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQV 272
           +  S+++  +  ++   +    K     + L  L                  ++ + K  
Sbjct: 218 DHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLL-----------------NVQNAKAW 259

Query: 273 DGLSFYGCRGL 283
           +  +   C+ L
Sbjct: 260 NAFNL-SCKIL 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 81/252 (32%)

Query: 8   KFYLHNLRGDPIMSSKVH--LDQGLDYL-PEELRYLHWHGYPLRTLPTNLSTDKLVVL-- 62
             + H      +   K+   ++  L+ L P E R +    +           D+L V   
Sbjct: 345 DNWKH------VNCDKLTTIIESSLNVLEPAEYRKM----F-----------DRLSVFPP 383

Query: 63  --NLPCSNVELLWEEKKEAFKLKSVDLCNSQNL---------TRMPDL--------SETP 103
             ++P   + L+W +  ++  +  V+  +  +L           +P +            
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 104 NLERMYLLNCTNLPFISSSIENLNNLSMLRLEG------------CKILGPFPAFISLSL 151
            L R  +++  N+P    S    ++L    L+              +       F  + L
Sbjct: 444 ALHRS-IVDHYNIPKTFDS----DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 152 TNLEVLD--LAHCKRLNRLSASICKLKSLSWLRLY------NCSK-------LESF-PGI 195
            +   L+  + H       S SI  L +L  L+ Y      N  K       +  F P I
Sbjct: 499 -DFRFLEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 196 LENMARLEYIDL 207
            EN+   +Y DL
Sbjct: 556 EENLICSKYTDL 567

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 36/191 (18%)

Query: 83  KSVDLCNSQNLTRMPDLSETP-NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG 141
           K VD C  ++L  +P  S  P + E++ L                  L+ L         
Sbjct: 17  KEVD-CQGKSLDSVP--SGIPADTEKLDL--------------QSTGLATL--------- 50

Query: 142 PFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNCSKLESFP-GILENM 199
               F    LT L  L+L    +L  LSA +   L  L  L L N ++L S P G+ +++
Sbjct: 51  SDATF--RGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHL 106

Query: 200 ARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDNL-GSLRSLKRLHTGKS 257
            +L+ + L    +K LPS V + L  LKELR+    +L  +P      L +L+ L    +
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTN 165

Query: 258 AISQLPSSIAD 268
            +  +P    D
Sbjct: 166 QLQSVPHGAFD 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 125 NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLY 184
               +  L L+ CK        ++    NLE L L +   L  +S ++ KL  L  L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS-NLPKLPKLKKLELS 79

Query: 185 NCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELR 229
                     + E +  L +++L    +K++ S++E L+ L+ L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLK 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 150 SLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCSKLESFP-GILENMARLEYIDL 207
               L  +DL++ + ++ L+      L+SL+ L LY   K+   P  + E +  L+ + L
Sbjct: 54  PYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLL 111

Query: 208 RLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPDN-LGSLRSLKRLH 253
               I  L     + L  L  L + Y  KL  +       LR+++ +H
Sbjct: 112 NANKINCLRVDAFQDLHNLNLLSL-YDNKLQTIAKGTFSPLRAIQTMH 158

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 120 SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS 179
           ++   N      L L G KI  P    +  +L   + +D +  + + +L      L+ L 
Sbjct: 12  AAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLK 67

Query: 180 WLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELR 229
            L + N        G+ + +  L  + L   ++ EL   ++ L  LK L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLT 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.88

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-31  Score=244.16  Aligned_cols=247  Identities=21%  Similarity=0.321  Sum_probs=204.2

Q ss_pred             cccCceEEEecCCCCC-ccCCCC-CCCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017           33 LPEELRYLHWHGYPLR-TLPTNL-STDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM  108 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L  108 (283)
                      ++ +|++|++++|.+. .+|..+ .+++|+.|++++|.+. .++..+..+++|+.|++.+|.....++ .+..+++|++|
T Consensus       393 ~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TC-CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cC-CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            55 7888888887774 555555 7888888888888877 566777888888888888888666666 57788889999


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  188 (283)
                      ++++|...+..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            9988887777888888889999999999888777888777 888899999999888878888888889999999988876


Q ss_pred             CCCCchh----------------------------------------------------------------------hhc
Q 036017          189 LESFPGI----------------------------------------------------------------------LEN  198 (283)
Q Consensus       189 ~~~~~~~----------------------------------------------------------------------~~~  198 (283)
                      .+.+|..                                                                      +..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            6554432                                                                      223


Q ss_pred             CCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCcee
Q 036017          199 MARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLS  276 (283)
Q Consensus       199 ~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~  276 (283)
                      +++|+.+++++|.++ .+|..++.++.|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..++.|++|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            467889999999988 78888999999999999999888899999999999999999999998 8889999999999999


Q ss_pred             eccCC
Q 036017          277 FYGCR  281 (283)
Q Consensus       277 l~~c~  281 (283)
                      +++|+
T Consensus       711 ls~N~  715 (768)
T 3rgz_A          711 LSNNN  715 (768)
T ss_dssp             CCSSE
T ss_pred             CcCCc
Confidence            99874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=4.5e-31  Score=241.20  Aligned_cols=245  Identities=22%  Similarity=0.280  Sum_probs=201.8

Q ss_pred             CceEEEecCCCC-CccCCCC-C--CCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017           36 ELRYLHWHGYPL-RTLPTNL-S--TDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY  109 (283)
Q Consensus        36 ~L~~L~l~~~~~-~~~~~~~-~--~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  109 (283)
                      +|++|++++|.+ +.++... .  +++|+.+++++|.+. .++..+.++++|+.|++++|.....++ .++.+++|+.|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            455555555544 1223222 2  567888888888777 566778888999999999988665666 578889999999


Q ss_pred             eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017          110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL  189 (283)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  189 (283)
                      +++|...+..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++.+..|.+++.+++|++|++++|.+.
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            999887778888888999999999999988877888777 8999999999999888888888899999999999999998


Q ss_pred             CCCchhhhcCCCCcEEeecCCCcc-ccchhh-------------------------------------------------
Q 036017          190 ESFPGILENMARLEYIDLRLTAIK-ELPSSV-------------------------------------------------  219 (283)
Q Consensus       190 ~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~-------------------------------------------------  219 (283)
                      +.+|..+..+++|+.+++++|.+. .+|..+                                                 
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence            888888999999999999998876 455432                                                 


Q ss_pred             ---------------------hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCceee
Q 036017          220 ---------------------EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSF  277 (283)
Q Consensus       220 ---------------------~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l  277 (283)
                                           +.+++|+.|++++|...+.+|..++.++.|+.|++++|.++ .+|..++++++|+.|++
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL  687 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL  687 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence                                 23467889999999888899999999999999999999998 88999999999999999


Q ss_pred             ccCC
Q 036017          278 YGCR  281 (283)
Q Consensus       278 ~~c~  281 (283)
                      ++|+
T Consensus       688 s~N~  691 (768)
T 3rgz_A          688 SSNK  691 (768)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            9885

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=2.5e-30  Score=223.21  Aligned_cols=271  Identities=14%  Similarity=0.143  Sum_probs=175.2

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC-ccCC-CC-CCCcceEEecCCCCcccc-hhhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR-TLPT-NL-STDKLVVLNLPCSNVELL-WEEKK   77 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~   77 (283)
                      ++|++|++++|.+.+        ..+..+..++ +|++|+++++.+. .++. .+ ++++|++|++++|.+..+ +..+.
T Consensus        30 ~~l~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  100 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE--------LNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN  100 (455)
T ss_dssp             TTCCEEECCSSCCCE--------ECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred             CccCEEEecCCccCc--------CChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence            457777777777664        3355566666 6666666666653 3332 22 566666666666666544 44555


Q ss_pred             ccCCccEEEccCCCCCCCCC---CCCCCCCCcEEeeeCCCCCCcchhh-ccCCCCCcEEEecCCCCcCCChhHhhc----
Q 036017           78 EAFKLKSVDLCNSQNLTRMP---DLSETPNLERMYLLNCTNLPFISSS-IENLNNLSMLRLEGCKILGPFPAFISL----  149 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~----  149 (283)
                      ++++|+.|++++|.....++   .+..+++|++|++++|......+.. +..+++|++|++++|.+.+..+..+..    
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~  180 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK  180 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred             CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence            66666666666665433211   1555666666666665544333332 455556666666555543322211110    


Q ss_pred             -----------------------------CC-------------------------------------------------
Q 036017          150 -----------------------------SL-------------------------------------------------  151 (283)
Q Consensus       150 -----------------------------~~-------------------------------------------------  151 (283)
                                                   .+                                                 
T Consensus       181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  260 (455)
T 3v47_A          181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN  260 (455)
T ss_dssp             EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred             cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence                                         11                                                 


Q ss_pred             --------------CccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-c
Q 036017          152 --------------TNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-P  216 (283)
Q Consensus       152 --------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~  216 (283)
                                    ++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.++.+ +
T Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence                          3455555555554444555677788888888888877766666778888888999988888855 4


Q ss_pred             hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017          217 SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR  281 (283)
Q Consensus       217 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~  281 (283)
                      ..+..+++|+.|++++|...+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            567888899999999887666667778888999999999999887765 45788899999998875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=220.22  Aligned_cols=270  Identities=17%  Similarity=0.193  Sum_probs=164.9

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccC-CCC-CCCcceEEecCCCCcccchh-hhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLP-TNL-STDKLVVLNLPCSNVELLWE-EKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~L~~l~l~~~~~~~~~~-~l~~   78 (283)
                      +++++|++++|.+.+        ..+..+..++ +|++|+++++.+..+. ..+ ++++|+.|++++|.+..++. .+.+
T Consensus        32 ~~l~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           32 TETRLLDLGKNRIKT--------LNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             TTCSEEECCSSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             CCCcEEECCCCccce--------ECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence            356777777776664        3345566666 7777777777665552 233 66777777777776666554 2456


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL  157 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (283)
                      +++|+.|++++|......+ .+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L  181 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHGLIVL  181 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTTCCEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc-ccCCCcEE
Confidence            6677777776666443333 456666666666666554444444555666666666666655442222333 55666666


Q ss_pred             eccCCcCcccchhhhcCCCC------------------------CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          158 DLAHCKRLNRLSASICKLKS------------------------LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       158 ~l~~~~~~~~~~~~l~~~~~------------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      ++++|.+....+..+..+++                        |++|++++|.+....+..+..+++|+.|++++|.++
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            66655544433334444444                        455555554444322245566677777777777776


Q ss_pred             ccch-hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017          214 ELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR  281 (283)
Q Consensus       214 ~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~  281 (283)
                      .++. .+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            5443 35667777777777766555556667777888888888888876664 45677888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.8e-29  Score=209.19  Aligned_cols=259  Identities=19%  Similarity=0.282  Sum_probs=150.5

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++|++|++++|.+.+         ++. +..++ +|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus        65 ~~~L~~L~l~~n~i~~---------~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~  132 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITD---------ISP-LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLT  132 (347)
T ss_dssp             CTTCCEEECCSSCCCC---------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred             cCCccEEEccCCcccc---------chh-hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCC
Confidence            3566666666665553         222 55566 677777777766665544466777777777776666554 55666


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH--------------
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF--------------  146 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------  146 (283)
                      +|+.|++++|.....++.+..+++|++|++++|..... +. +..+++|++|++++|.+.+ ++..              
T Consensus       133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVN  209 (347)
T ss_dssp             TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSS
T ss_pred             ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCcccc-cccccCCCccceeecccC
Confidence            77777776665555555566666666666666543322 21 4566666666666665433 2221              


Q ss_pred             -------hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh
Q 036017          147 -------ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV  219 (283)
Q Consensus       147 -------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~  219 (283)
                             +. .+++|+.|++++|.+....+  +..+++|++|++++|.+.. + +.+..+++|+.+++++|.++.++ .+
T Consensus       210 ~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~  283 (347)
T 4fmz_A          210 QITDITPVA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VL  283 (347)
T ss_dssp             CCCCCGGGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCchhh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hh
Confidence                   22 34455555555544332221  4455566666665554443 2 34555666666666666666553 35


Q ss_pred             hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          220 EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      ..+++|+.|++++|...+..+..+..+++|+.|++++|.++.++. +..+++|++|++++|+
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            566666667666665554555556666777777777777765544 6667777777776664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=219.73  Aligned_cols=247  Identities=19%  Similarity=0.203  Sum_probs=196.9

Q ss_pred             ccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017           34 PEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY  109 (283)
Q Consensus        34 ~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  109 (283)
                      |.+++.|+++++.+..++. .+ .+++|+.|++++|.+..+ +..+.++++|+.|++++|......+ .+..+++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            4489999999999987754 34 899999999999999976 5678899999999999998443333 478999999999


Q ss_pred             eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017          110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL  189 (283)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  189 (283)
                      +++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            999877666677789999999999999987765555565 8999999999999877666677899999999999998776


Q ss_pred             CCCchhhhcCC------------------------CCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccC
Q 036017          190 ESFPGILENMA------------------------RLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLG  244 (283)
Q Consensus       190 ~~~~~~~~~~~------------------------~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~  244 (283)
                      ...+..+..++                        +|+.|++++|.++.++. .+..+++|+.|++++|...+..+..+.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            54333444444                        45555556666666664 467888889999988776555556678


Q ss_pred             CCcccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017          245 SLRSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       245 ~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~  281 (283)
                      .+++|+.|++++|.++.+ +..+..+++|++|++++|.
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            888999999999988855 5677888999999998873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=2.6e-29  Score=224.96  Aligned_cols=264  Identities=16%  Similarity=0.162  Sum_probs=216.5

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCC--cCCCcccCceEEEecCCCCC-ccCCCCCCCcceEEecCCCCcccchhhhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQ--GLDYLPEELRYLHWHGYPLR-TLPTNLSTDKLVVLNLPCSNVELLWEEKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~   78 (283)
                      ++|++|++++|.++         .+|.  .+..++ +|++|++++|.+. .+|.+..+++|+.|++++|.+..++..+..
T Consensus       305 ~~L~~L~L~~n~l~---------~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~  374 (636)
T 4eco_A          305 EKIQIIYIGYNNLK---------TFPVETSLQKMK-KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG  374 (636)
T ss_dssp             GTCCEEECCSSCCS---------SCCCHHHHTTCT-TCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEE
T ss_pred             CCCCEEECCCCcCC---------ccCchhhhccCC-CCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhh
Confidence            57777777777766         4677  788888 9999999999986 888333889999999999999988888888


Q ss_pred             cCC-ccEEEccCCCCCCCCC-CCCC--CCCCcEEeeeCCCCCCcchhhcc-------CCCCCcEEEecCCCCcCCChhHh
Q 036017           79 AFK-LKSVDLCNSQNLTRMP-DLSE--TPNLERMYLLNCTNLPFISSSIE-------NLNNLSMLRLEGCKILGPFPAFI  147 (283)
Q Consensus        79 ~~~-L~~L~l~~~~~~~~~~-~~~~--~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~  147 (283)
                      +++ |+.|++++|... .++ .+..  +++|+.|++++|......|..+.       .+++|++|++++|.+. .+|..+
T Consensus       375 l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  452 (636)
T 4eco_A          375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL  452 (636)
T ss_dssp             ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH
T ss_pred             hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHH
Confidence            988 999999999855 666 3444  34899999999887776666666       7789999999999876 467665


Q ss_pred             hcCCCccCEEeccCCcCcccchhh-hcCC-------CCCCeEeecCCCCCCCCchhhh--cCCCCcEEeecCCCccccch
Q 036017          148 SLSLTNLEVLDLAHCKRLNRLSAS-ICKL-------KSLSWLRLYNCSKLESFPGILE--NMARLEYIDLRLTAIKELPS  217 (283)
Q Consensus       148 ~~~~~~L~~L~l~~~~~~~~~~~~-l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~~~~  217 (283)
                      ...+++|+.|++++|.+. .++.. +...       ++|++|++++|.+. .+|..+.  .+++|+.|++++|.++.+|.
T Consensus       453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~  530 (636)
T 4eco_A          453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPT  530 (636)
T ss_dssp             HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred             HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence            547899999999998876 44433 2222       28999999998887 6777776  89999999999999999999


Q ss_pred             hhhcCCCccEEecc------cccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          218 SVEHLEGLKELRME------YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       218 ~~~~~~~L~~L~l~------~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      .+..+++|+.|+++      +|...+.+|..+..+++|+.|++++|.++.+|..+.  ++|++|++++|+
T Consensus       531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred             hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence            99999999999995      455567888889999999999999999998887655  899999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.3e-28  Score=219.68  Aligned_cols=248  Identities=18%  Similarity=0.180  Sum_probs=148.4

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccc-hhhhhccC
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELL-WEEKKEAF   80 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~   80 (283)
                      +|+++++++|.+.+        ..+..+..++ +|++|+++++.+..+|..+ .+++|+.|++++|.+..+ +..+..++
T Consensus       255 ~L~~L~l~~n~l~~--------~~~~~~~~l~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          255 SVESINLQKHYFFN--------ISSNTFHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             EEEEEECTTCCCSS--------CCTTTTTTCT-TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             ceeEEEeecCccCc--------cCHHHhcccc-CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            57788888887765        3345577788 8888888888888887766 788888888888888765 44677788


Q ss_pred             CccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcc--hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCE
Q 036017           81 KLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFI--SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEV  156 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  156 (283)
                      +|+.|++++|.....++  .+..+++|++|++++|......  +..+..+++|++|++++|.+.+..+..+. .+++|+.
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~  404 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL  404 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCe
Confidence            88888888876554444  3667777777777776554332  44556666677777766665443344443 5556666


Q ss_pred             EeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc--cc--hhhhcCCCccEEecc
Q 036017          157 LDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE--LP--SSVEHLEGLKELRME  231 (283)
Q Consensus       157 L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~--~~~~~~~~L~~L~l~  231 (283)
                      |++++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+..  ++  ..+..+++|+.|+++
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence            66666554333222 24455555555555555544444444455555555555554442  11  223444445555554


Q ss_pred             cccCCCCCccccCCCcccceeecCCcccc
Q 036017          232 YCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +|...+..|..+..+++|+.|++++|.++
T Consensus       485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCccChhhhccccCCCEEECCCCccC
Confidence            44433333344444444444444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.2e-30  Score=230.75  Aligned_cols=266  Identities=16%  Similarity=0.175  Sum_probs=161.9

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CC--ccCCCC-CC------CcceEEecCCCCcc
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LR--TLPTNL-ST------DKLVVLNLPCSNVE   70 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~-~~------~~L~~l~l~~~~~~   70 (283)
                      +++|++|++++|.+.+        .+|..+..++ +|++|++++|. +.  .+|..+ .+      ++|+.|++++|.+.
T Consensus       248 l~~L~~L~L~~n~l~~--------~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLT--------KLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             CTTCCEEEEECCTTCS--------SCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             cCCCCEEEecCCcCCc--------cChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            5789999999998887        7788888888 89999988887 64  355544 33      78888888888888


Q ss_pred             cchh--hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCC-CcEEEecCCCCcCCChhHh
Q 036017           71 LLWE--EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNN-LSMLRLEGCKILGPFPAFI  147 (283)
Q Consensus        71 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~  147 (283)
                      .+|.  .+.++++|+.|++++|.....++.++.+++|+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~  396 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF  396 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence            7777  777888888888888875545666666777777777776543 55666666666 777777777655 455443


Q ss_pred             hcCC--CccCEEeccCCcCcccchhhhc-------CCCCCCeEeecCCCCCCCCc-hhhhcCCC----------------
Q 036017          148 SLSL--TNLEVLDLAHCKRLNRLSASIC-------KLKSLSWLRLYNCSKLESFP-GILENMAR----------------  201 (283)
Q Consensus       148 ~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~-~~~~~~~~----------------  201 (283)
                      . ..  ++|+.|++++|.+.+..|..+.       .+++|++|++++|.+.. +| ..+..+++                
T Consensus       397 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          397 D-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             C-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             h-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            2 22  2566666666555444444343       34455555555544442 22 22233444                


Q ss_pred             ---------------CcEEeecCCCccccchhhh--cCCCccEEecccccCCCCCccccCCCcccceeecC------Ccc
Q 036017          202 ---------------LEYIDLRLTAIKELPSSVE--HLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTG------KSA  258 (283)
Q Consensus       202 ---------------L~~l~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~------~~~  258 (283)
                                     |+.|++++|.++.+|..+.  .+++|+.|++++|...+ +|..+..+++|+.|+++      +|.
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred             HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence                           5555555555554444443  55555555555544333 44444555555555552      233


Q ss_pred             cc-cccHHhhccCCCCceeeccC
Q 036017          259 IS-QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       259 i~-~~~~~~~~~~~L~~L~l~~c  280 (283)
                      +. .+|..+..+++|++|++++|
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ccccChHHHhcCCCCCEEECCCC
Confidence            32 44445555555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=7.4e-29  Score=221.27  Aligned_cols=269  Identities=18%  Similarity=0.169  Sum_probs=229.5

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcc-cchh-hh
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVE-LLWE-EK   76 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~-~~~~-~l   76 (283)
                      +++|++|++++|.+.         .+|..+..++ +|++|++++|.+..+++ .+ .+++|+.+++++|.+. .++. .+
T Consensus       277 l~~L~~L~l~~n~l~---------~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          277 FSGLQELDLTATHLS---------ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             CTTCSEEECTTSCCS---------CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             ccCCCEEeccCCccC---------CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            478999999999877         5788889999 99999999999977643 34 8999999999999877 4543 47


Q ss_pred             hccCCccEEEccCCCCCCCC--C-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCC
Q 036017           77 KEAFKLKSVDLCNSQNLTRM--P-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLT  152 (283)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~  152 (283)
                      ..+++|+.|++++|......  + .+..+++|++|++++|......+..+..+++|++|++++|.+.+..+.. +. .++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~  425 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLH  425 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT-TCT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh-Ccc
Confidence            78999999999999865442  3 5789999999999998776666778889999999999999877655444 44 889


Q ss_pred             ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC---CchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEE
Q 036017          153 NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES---FPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKEL  228 (283)
Q Consensus       153 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L  228 (283)
                      +|+.|++++|.+....+..++.+++|++|++++|.+.+.   .+..+..+++|+.|++++|.++.+ |..+..+++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            999999999988777787889999999999999988753   235688899999999999999965 5678999999999


Q ss_pred             ecccccCCCCCccccCCCcccceeecCCccccccc-HHhhccCCCCceeeccCC
Q 036017          229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~c~  281 (283)
                      ++++|...+..+..+..++.| .|++++|.++.++ ..+..+++|++|++++|+
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            999998878788899999999 9999999999654 567899999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.7e-29  Score=219.37  Aligned_cols=80  Identities=20%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc--chhhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL--LWEEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~l~~~   79 (283)
                      ++|++|++++|.+++        ..|..+..++ +|++|++++|.+..+|.. .+++|++|++++|.+..  +|..++++
T Consensus        45 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l  114 (520)
T 2z7x_B           45 SKLRILIISHNRIQY--------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM  114 (520)
T ss_dssp             TTCCEEECCSSCCCE--------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred             ccccEEecCCCccCC--------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccC
Confidence            456666666666553        3355666666 777777777766666655 66677777777776664  34556666


Q ss_pred             CCccEEEccCCC
Q 036017           80 FKLKSVDLCNSQ   91 (283)
Q Consensus        80 ~~L~~L~l~~~~   91 (283)
                      ++|+.|++++|.
T Consensus       115 ~~L~~L~L~~n~  126 (520)
T 2z7x_B          115 SQLKFLGLSTTH  126 (520)
T ss_dssp             TTCCEEEEEESS
T ss_pred             CcceEEEecCcc
Confidence            666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-28  Score=207.94  Aligned_cols=265  Identities=16%  Similarity=0.159  Sum_probs=129.6

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCc-CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQG-LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKK   77 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~   77 (283)
                      +++++++++++.+.         .+|.. +..++ +|++|+++++.+..++. .+ .+++|+.|++++|.+..++ ..+.
T Consensus        45 ~~l~~l~l~~~~l~---------~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR---------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             CCCSEEEEESCEES---------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCceEEEecCCchh---------hCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            45666666666655         34433 45566 66666666666655543 22 5666666666666666543 3355


Q ss_pred             ccCCccEEEccCCCCCCCCC-C-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh-------
Q 036017           78 EAFKLKSVDLCNSQNLTRMP-D-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS-------  148 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------  148 (283)
                      ++++|+.|++++|... .++ . +..+++|++|++++|......+..+..+++|++|++++|.+.+.-...+.       
T Consensus       115 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  193 (390)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred             CCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence            6666666666666533 333 2 45666666666666554444444456666666666666654431101000       


Q ss_pred             --------cCCCccCEEeccCCcCcccc-------------------hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCC
Q 036017          149 --------LSLTNLEVLDLAHCKRLNRL-------------------SASICKLKSLSWLRLYNCSKLESFPGILENMAR  201 (283)
Q Consensus       149 --------~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  201 (283)
                              ...++|+.|++++|.+....                   ...+..+++|++|++++|.+.+..+..+..+++
T Consensus       194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (390)
T 3o6n_A          194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR  273 (390)
T ss_dssp             CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred             ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence                    01123333333333321110                   012334444444444444444333344444444


Q ss_pred             CcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccC
Q 036017          202 LEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       202 L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c  280 (283)
                      |+.|++++|.++.++..+..+++|+.|++++|. +..++..+..+++|+.|++++|.++.++  +..+++|++|++++|
T Consensus       274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence            444444444444444434444445555554442 2233333444444555555555444442  334445555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=7.1e-30  Score=209.70  Aligned_cols=244  Identities=16%  Similarity=0.220  Sum_probs=212.1

Q ss_pred             CceEEEecCCCCC---ccCCCC-CCCcceEEecCC-CCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017           36 ELRYLHWHGYPLR---TLPTNL-STDKLVVLNLPC-SNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM  108 (283)
Q Consensus        36 ~L~~L~l~~~~~~---~~~~~~-~~~~L~~l~l~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L  108 (283)
                      +++.|+++++.+.   .++..+ .+++|++|++++ +.+. .++..+.++++|+.|++++|.+...++ .+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            8999999999985   577666 899999999995 7777 677888999999999999998665666 58889999999


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCC-ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLT-NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      ++++|......|..+..+++|++|++++|.+.+.+|..+. .++ +|+.|++++|.+.+..+..+..+. |++|++++|.
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999887767888899999999999999998777888887 776 999999999987777788888777 9999999988


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHh
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSI  266 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~  266 (283)
                      +.+..+..+..+++|+.|++++|.++..+..+..+++|++|++++|...+.+|..+..+++|+.|++++|.++ .+|.. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            8877888888999999999999999855555788899999999998877788889999999999999999998 66664 


Q ss_pred             hccCCCCceeeccCCC
Q 036017          267 ADLKQVDGLSFYGCRG  282 (283)
Q Consensus       267 ~~~~~L~~L~l~~c~~  282 (283)
                      ..+++|+.+++.+|+.
T Consensus       288 ~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             TTGGGSCGGGTCSSSE
T ss_pred             ccccccChHHhcCCCC
Confidence            7899999999998873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.6e-28  Score=200.47  Aligned_cols=264  Identities=15%  Similarity=0.124  Sum_probs=151.6

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCcccchhhhhccC
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      ++++|++++|.+++        ..+..+..++ +|++|+++++.+..+ +..+ .+++|++|++++|.+..++..+  .+
T Consensus        53 ~l~~L~L~~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~  121 (330)
T 1xku_A           53 DTALLDLQNNKITE--------IKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PK  121 (330)
T ss_dssp             TCCEEECCSSCCCC--------BCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CT
T ss_pred             CCeEEECCCCcCCE--------eChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cc
Confidence            45555555555543        2223455555 666666666655444 2233 5566666666666555554433  24


Q ss_pred             CccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017           81 KLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL  157 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (283)
                      +|+.|++++|......+ .+..+++|+.|++++|....  ..+..+..+++|++|++++|.+.. +|..+   +++|+.|
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~---~~~L~~L  197 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL---PPSLTEL  197 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC---CTTCSEE
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc---cccCCEE
Confidence            56666666555332222 24556666666666654432  334455666666666666665443 34322   2567777


Q ss_pred             eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017          158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...+
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence            77776655555566667777777777776666554456667777777777777777777767777777777777765443


Q ss_pred             CCccccC------CCcccceeecCCcccc--cc-cHHhhccCCCCceeeccCC
Q 036017          238 KLPDNLG------SLRSLKRLHTGKSAIS--QL-PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       238 ~l~~~~~------~l~~L~~L~l~~~~i~--~~-~~~~~~~~~L~~L~l~~c~  281 (283)
                      .-+..+.      ..+.++.+++++|.++  .+ |..+..++.++.+++++|+
T Consensus       278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            2223332      2356677777777665  22 3455666777777777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=1.3e-27  Score=199.09  Aligned_cols=258  Identities=19%  Similarity=0.284  Sum_probs=179.8

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++|++|+++++.+.         .++ .+..++ +|++|++++|.+..++....+++|++|++++|.+..++ .+..++
T Consensus        43 l~~L~~L~l~~~~i~---------~~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~  110 (347)
T 4fmz_A           43 LESITKLVVAGEKVA---------SIQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLT  110 (347)
T ss_dssp             HTTCSEEECCSSCCC---------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred             cccccEEEEeCCccc---------cch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCC
Confidence            367999999988876         344 377788 99999999999988877558999999999999999875 488899


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA  160 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (283)
                      +|+.|++++|. ...++.+..+++|+.|++++|......+ .+..+++|++|++++|.+.+ .+. +. .+++|+.|+++
T Consensus       111 ~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~-~l~~L~~L~l~  185 (347)
T 4fmz_A          111 NLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IA-NLTDLYSLSLN  185 (347)
T ss_dssp             TCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCSEEECT
T ss_pred             cCCEEECcCCc-ccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hc-cCCCCCEEEcc
Confidence            99999999988 4455568899999999999986665554 47899999999999998755 443 44 88999999999


Q ss_pred             CCcCcccchhhhcCCCCCCeEeecCCCCCCC---------------------CchhhhcCCCCcEEeecCCCccccchhh
Q 036017          161 HCKRLNRLSASICKLKSLSWLRLYNCSKLES---------------------FPGILENMARLEYIDLRLTAIKELPSSV  219 (283)
Q Consensus       161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~L~~l~l~~~~l~~~~~~~  219 (283)
                      +|.+....+  +..+++|+.+++++|.+...                     .+. +..+++|+.+++++|.++.++ .+
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~  261 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AV  261 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hH
Confidence            987543322  34444455555444433322                     111 445555555555555555442 34


Q ss_pred             hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCceeeccCC
Q 036017          220 EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       220 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      ..+++|+.|++++|... .+ +.+..+++|+.|++++|.++ ..+..+..+++|++|++++|+
T Consensus       262 ~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             hcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            55556666666655332 22 33555666666666666666 333455666777777776664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6.2e-28  Score=199.88  Aligned_cols=242  Identities=14%  Similarity=0.168  Sum_probs=148.7

Q ss_pred             CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCC-------------------
Q 036017           36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNL-------------------   93 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~-------------------   93 (283)
                      ++++|+++++.+..+++ .+ ++++|+.|++++|.+..+ +..+.++++|+.|++++|...                   
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~  134 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR  134 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCc
Confidence            45555555555544432 22 455555555555555443 334444555555555554422                   


Q ss_pred             -CCCC--CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccc
Q 036017           94 -TRMP--DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRL  168 (283)
Q Consensus        94 -~~~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (283)
                       ..++  .+..+++|+.|++++|....  ..+..+..+ +|+.|++++|.+.+ +|..+   +++|+.|++++|.+....
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCC
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccC
Confidence             1121  13444445555544443321  222223333 44455555444332 33222   257888888887766666


Q ss_pred             hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCC---
Q 036017          169 SASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGS---  245 (283)
Q Consensus       169 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~---  245 (283)
                      +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|......+..+..   
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence            66788889999999999888776666788899999999999999999888899999999999997655433333433   


Q ss_pred             ---CcccceeecCCcccc--cc-cHHhhccCCCCceeeccCCC
Q 036017          246 ---LRSLKRLHTGKSAIS--QL-PSSIADLKQVDGLSFYGCRG  282 (283)
Q Consensus       246 ---l~~L~~L~l~~~~i~--~~-~~~~~~~~~L~~L~l~~c~~  282 (283)
                         .+.|+.|++++|.++  ++ +..+..++.|+.+++++|++
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~  332 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK  332 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence               467889999999876  33 45678899999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=7.2e-29  Score=203.68  Aligned_cols=249  Identities=19%  Similarity=0.224  Sum_probs=216.3

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecC-CCC-CccCCCC-CCCcceEEecCCCCcc-cchhhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHG-YPL-RTLPTNL-STDKLVVLNLPCSNVE-LLWEEKK   77 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~   77 (283)
                      .++++|+++++.+.+      ...+|..+..++ +|++|++++ +.+ +.+|..+ .+++|++|++++|.+. .++..+.
T Consensus        50 ~~l~~L~L~~~~l~~------~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK------PYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSS------CEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             ceEEEEECCCCCccC------CcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence            478999999998875      225678889999 999999995 776 4667666 8999999999999998 7788899


Q ss_pred             ccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCC-CCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017           78 EAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLN-NLSMLRLEGCKILGPFPAFISLSLTNLE  155 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (283)
                      ++++|+.|++++|.....++ .+..+++|++|++++|...+..|..+..++ +|++|++++|.+.+..|..+. .++ |+
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~  200 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LA  200 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CS
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-cc
Confidence            99999999999998776666 588999999999999887667888888888 999999999998877787776 666 99


Q ss_pred             EEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEeccccc
Q 036017          156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      .|++++|.+....+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            999999988778888899999999999999888765554 778899999999999999 888889999999999999998


Q ss_pred             CCCCCccccCCCcccceeecCCcc-ccc
Q 036017          235 KLSKLPDNLGSLRSLKRLHTGKSA-ISQ  261 (283)
Q Consensus       235 ~~~~l~~~~~~l~~L~~L~l~~~~-i~~  261 (283)
                      ..+.+|.. ..+++|+.+++++|. +.+
T Consensus       280 l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          280 LCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccccCCCC-ccccccChHHhcCCCCccC
Confidence            87778776 889999999999987 444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=9.5e-28  Score=219.34  Aligned_cols=264  Identities=15%  Similarity=0.136  Sum_probs=205.9

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCC--cCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQ--GLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~   79 (283)
                      ++|++|++++|.+.         .+|.  .+..++ +|++|++++|.+..+|.+..+++|+.|++++|.+..++..+..+
T Consensus       548 ~~L~~L~Ls~N~L~---------~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l  617 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE---------EFPASASLQKMV-KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF  617 (876)
T ss_dssp             TTCCEEECCSSCCC---------BCCCHHHHTTCT-TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEE
T ss_pred             CCccEEEeeCCcCC---------ccCChhhhhcCC-CCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhc
Confidence            46777777777666         5677  778888 88888888888888874337888888888888888888778888


Q ss_pred             CC-ccEEEccCCCCCCCCC-CCCCC--CCCcEEeeeCCCCCCcch---hhcc--CCCCCcEEEecCCCCcCCChhHhhcC
Q 036017           80 FK-LKSVDLCNSQNLTRMP-DLSET--PNLERMYLLNCTNLPFIS---SSIE--NLNNLSMLRLEGCKILGPFPAFISLS  150 (283)
Q Consensus        80 ~~-L~~L~l~~~~~~~~~~-~~~~~--~~L~~L~l~~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~  150 (283)
                      ++ |+.|++++|... .+| .+...  ++|+.|++++|...+..|   ..+.  .+++|+.|++++|.+. .+|..+...
T Consensus       618 ~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~  695 (876)
T 4ecn_A          618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT  695 (876)
T ss_dssp             CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT
T ss_pred             cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHcc
Confidence            88 899999888754 555 34444  348888888877654332   2222  3458999999998876 477666547


Q ss_pred             CCccCEEeccCCcCcccchhhhcC--------CCCCCeEeecCCCCCCCCchhhh--cCCCCcEEeecCCCccccchhhh
Q 036017          151 LTNLEVLDLAHCKRLNRLSASICK--------LKSLSWLRLYNCSKLESFPGILE--NMARLEYIDLRLTAIKELPSSVE  220 (283)
Q Consensus       151 ~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~~~~~~~  220 (283)
                      +++|+.|++++|.+. .+|..+..        +++|++|++++|.+. .+|..+.  .+++|+.|++++|.++.+|..+.
T Consensus       696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~  773 (876)
T 4ecn_A          696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL  773 (876)
T ss_dssp             TCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred             CCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence            899999999998765 44444322        238999999998777 6777776  88999999999999999988889


Q ss_pred             cCCCccEEeccc------ccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          221 HLEGLKELRMEY------CYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       221 ~~~~L~~L~l~~------~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      .+++|+.|++++      |...+.+|..+..+++|+.|++++|.++.+|..+.  ++|+.|++++|+
T Consensus       774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCT
T ss_pred             cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCC
Confidence            999999999976      55567788888899999999999999998887654  689999999986

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=2.3e-28  Score=216.14  Aligned_cols=131  Identities=16%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC--CchhhhcCCCCcEEeecCCCccc-cchh-hhcC---
Q 036017          150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES--FPGILENMARLEYIDLRLTAIKE-LPSS-VEHL---  222 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~~-~~~~-~~~~---  222 (283)
                      .+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+.  .+..+..+++|+.|++++|.++. +|.. +..+   
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            344455555555444443444444455555555555444321  12233444445555555444442 3322 1222   


Q ss_pred             -------------------CCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hhccCCCCceeeccCC
Q 036017          223 -------------------EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IADLKQVDGLSFYGCR  281 (283)
Q Consensus       223 -------------------~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~c~  281 (283)
                                         ++|+.|++++|. ++.+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence                               456666666543 334555555666777777777777766655 6667777777776664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.6e-28  Score=224.45  Aligned_cols=265  Identities=18%  Similarity=0.167  Sum_probs=172.8

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CCc--cCCC--------CCCCcceEEecCCCCc
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LRT--LPTN--------LSTDKLVVLNLPCSNV   69 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~--------~~~~~L~~l~l~~~~~   69 (283)
                      +++|++|++++|.+.+        .+|..+..++ +|++|++++|. +..  +|..        ..+++|+.|++++|.+
T Consensus       490 L~~L~~L~Ls~N~l~~--------~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMT--------QLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             CTTCCEEEEESCTTCC--------SCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CCCCCEEECcCCCCCc--------cChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            5789999999999887        7888889999 99999999997 643  5432        2456999999999998


Q ss_pred             ccchh--hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCC-CcEEEecCCCCcCCChhH
Q 036017           70 ELLWE--EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNN-LSMLRLEGCKILGPFPAF  146 (283)
Q Consensus        70 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~  146 (283)
                      ..+|.  .+.++++|+.|++++|... .++.++.+++|+.|++++|... .+|..+..+++ |+.|++++|.+. .+|..
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence            88887  7888999999999988855 7778888889999999887655 77777788887 888888888765 45544


Q ss_pred             hhcCCC--ccCEEeccCCcCccc----------------------------chhh-hcCCCCCCeEeecCCCCCCCCchh
Q 036017          147 ISLSLT--NLEVLDLAHCKRLNR----------------------------LSAS-ICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       147 ~~~~~~--~L~~L~l~~~~~~~~----------------------------~~~~-l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      +. ..+  +|+.|++++|.+.+.                            +|.. +..+++|+.|++++|.+. .+|..
T Consensus       638 ~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~  715 (876)
T 4ecn_A          638 FN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN  715 (876)
T ss_dssp             CC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred             hh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence            32 222  255555555544332                            2222 224455555555554444 23322


Q ss_pred             hhc--------CCCCcEEeecCCCccccchhhh--cCCCccEEecccccCCCCCccccCCCcccceeecCC------ccc
Q 036017          196 LEN--------MARLEYIDLRLTAIKELPSSVE--HLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK------SAI  259 (283)
Q Consensus       196 ~~~--------~~~L~~l~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~------~~i  259 (283)
                      +..        +++|+.|++++|.++.+|..+.  .+++|+.|++++|...+ +|..+..+++|+.|++++      |.+
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            111        1255555555555555555554  55556666665554333 455555555666665544      333


Q ss_pred             c-cccHHhhccCCCCceeeccC
Q 036017          260 S-QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       260 ~-~~~~~~~~~~~L~~L~l~~c  280 (283)
                      . .+|..+..+++|++|++++|
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSS
T ss_pred             cccChHHHhcCCCCCEEECCCC
Confidence            3 45555555666666666555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.2e-28  Score=219.91  Aligned_cols=264  Identities=17%  Similarity=0.144  Sum_probs=189.7

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc-cchhhhhccC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE-LLWEEKKEAF   80 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~l~~~~   80 (283)
                      ++|++++++++.+.         .++ .+..++ +|++|++++|.++.+|.. .+++|+.+++++|... .+  .+..++
T Consensus       285 ~~L~~L~l~~~~~~---------~l~-~l~~~~-~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~  350 (606)
T 3vq2_A          285 ANVSAMSLAGVSIK---------YLE-DVPKHF-KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVALP  350 (606)
T ss_dssp             TTCSEEEEESCCCC---------CCC-CCCTTC-CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred             CCCCEEEecCccch---------hhh-hccccc-cCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccCC
Confidence            46667777766654         344 556666 777777777777666655 6777777777776333 22  345677


Q ss_pred             CccEEEccCCCCCCC--CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCCh-hHhhcCCCccCE
Q 036017           81 KLKSVDLCNSQNLTR--MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFP-AFISLSLTNLEV  156 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~  156 (283)
                      +|+.|++++|.....  ++ .+..+++|++|++++|.. ...+..+..+++|+.|++++|.+.+..+ ..+. .+++|+.
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~  428 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLY  428 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCE
Confidence            777777777654332  12 356677777777777653 3455566777888888888877665444 3444 7788888


Q ss_pred             EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEeccccc
Q 036017          157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES-FPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~  234 (283)
                      |++++|.+....+..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            88888877776777778888888888888777663 566677888888888888888854 4557788888888888887


Q ss_pred             CCCCCccccCCCcccceeecCCcccccccHHhhccC-CCCceeeccCC
Q 036017          235 KLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLK-QVDGLSFYGCR  281 (283)
Q Consensus       235 ~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~-~L~~L~l~~c~  281 (283)
                      ..+..|..+..+++|+.|++++|.++.+|..+..++ +|++|++++|+
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence            666667788888888888888888888887777776 58888888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=9.2e-28  Score=213.64  Aligned_cols=247  Identities=15%  Similarity=0.118  Sum_probs=110.0

Q ss_pred             CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCCC-CCCCCCC
Q 036017           30 LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMPD-LSETPNL  105 (283)
Q Consensus        30 ~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L  105 (283)
                      +..++ +|++|+++++.+..+++ .+ .+++|+.|++++|.+..++. .+.++++|+.|++++|......+. ++.+++|
T Consensus        71 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           71 LDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            34444 55555555555544432 22 45555555555555554332 234455555555555543221111 3445555


Q ss_pred             cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh---------------cCCCccCEEeccCCcCcccc--
Q 036017          106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS---------------LSLTNLEVLDLAHCKRLNRL--  168 (283)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------~~~~~L~~L~l~~~~~~~~~--  168 (283)
                      ++|++++|......+..+..+++|++|++++|.+.+.-...+.               ..+++|+.|++++|.+....  
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            5555555444333333444555555555555443321000000               01223333333333221111  


Q ss_pred             -----------------hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecc
Q 036017          169 -----------------SASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME  231 (283)
Q Consensus       169 -----------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~  231 (283)
                                       +..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus       230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred             cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence                             123444455555555554444444444445555555555555555444444445555555555


Q ss_pred             cccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccC
Q 036017          232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c  280 (283)
                      +|... .+|..+..+++|+.|++++|.++.++  +..+++|++|++++|
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence            54322 34444444455555555555554443  344455555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=4e-27  Score=199.20  Aligned_cols=244  Identities=16%  Similarity=0.138  Sum_probs=191.7

Q ss_pred             CcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcE
Q 036017           32 YLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLER  107 (283)
Q Consensus        32 ~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~  107 (283)
                      .++ ++++|+++++.++.+|...  .+++|+.|++++|.+..++. .+..+++|+.|++++|......+ .++.+++|++
T Consensus        43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            357 9999999999999998754  79999999999999997764 68889999999999998655444 4789999999


Q ss_pred             EeeeCCCCCCcchhh-ccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC------------
Q 036017          108 MYLLNCTNLPFISSS-IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK------------  174 (283)
Q Consensus       108 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------  174 (283)
                      |++++|... .++.. +..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.......+..            
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence            999998654 55544 58899999999999988764455555 8899999999998765432111111            


Q ss_pred             -------------------------CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEE
Q 036017          175 -------------------------LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKEL  228 (283)
Q Consensus       175 -------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L  228 (283)
                                               .++|+.|++++|.+.+.  ..+..+++|+.|++++|.+..+ +..+..+++|+.|
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                                     12345555555444432  4577888999999999998854 6678889999999


Q ss_pred             ecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      ++++|.. ..++.....+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus       278 ~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          278 YISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             ECCSSCC-CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ECCCCcC-cccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence            9998754 446666678899999999999999888888899999999998875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.1e-27  Score=203.83  Aligned_cols=248  Identities=20%  Similarity=0.205  Sum_probs=185.6

Q ss_pred             cccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCcc-cc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcE
Q 036017           33 LPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVE-LL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLER  107 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~-~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~  107 (283)
                      +|+++++|+++++.+..+ +..+ ++++|++|++++|.+. .+ +..+.++++|+.|++++|......+ .++.+++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            444999999999999776 4444 8999999999999886 44 4568889999999999998665545 6899999999


Q ss_pred             EeeeCCCCCCcchhh--ccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCcccchhhhcC----------
Q 036017          108 MYLLNCTNLPFISSS--IENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRLNRLSASICK----------  174 (283)
Q Consensus       108 L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~----------  174 (283)
                      |++++|......+..  +..+++|++|++++|.+.+..|.. +. .+++|+.|++++|.+....+..+..          
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~  186 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR  186 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG-GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC-CCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence            999998776555554  789999999999999987765655 44 8999999999998765443332221          


Q ss_pred             ------------------------CCCCCeEeecCCCC------------------------------------------
Q 036017          175 ------------------------LKSLSWLRLYNCSK------------------------------------------  188 (283)
Q Consensus       175 ------------------------~~~L~~L~l~~~~~------------------------------------------  188 (283)
                                              +++|++|++++|.+                                          
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence                                    23455555555433                                          


Q ss_pred             ---------------------CCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCC
Q 036017          189 ---------------------LESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSL  246 (283)
Q Consensus       189 ---------------------~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l  246 (283)
                                           .+..+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|...+..+..+..+
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence                                 333344566677778888888777754 4456777888888888876655556667778


Q ss_pred             cccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017          247 RSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       247 ~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~  281 (283)
                      ++|+.|++++|.++.+ |..+..+++|++|++++|+
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            8888888888888755 5667788888888887763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.3e-27  Score=197.38  Aligned_cols=224  Identities=24%  Similarity=0.353  Sum_probs=183.2

Q ss_pred             ccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017           34 PEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL  111 (283)
Q Consensus        34 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~  111 (283)
                      + +++.|+++++.+..+|..+ .+++|++|++++|.+..++..+.++++|+.|++++|... .++ .+..+++|+.|+++
T Consensus        81 ~-~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 P-GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             T-TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             c-ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            5 8888888888888887766 788888899988888888877888888899998888755 555 57888888888888


Q ss_pred             CCCCCCcchhhcc---------CCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017          112 NCTNLPFISSSIE---------NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR  182 (283)
Q Consensus       112 ~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  182 (283)
                      +|.....+|..+.         .+++|++|++++|.+. .+|..+. .+++|+.|++++|.+. .++..++.+++|++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence            8777776666554         4888999999988876 5777776 8889999999988765 4555678888999999


Q ss_pred             ecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccc
Q 036017          183 LYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ  261 (283)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~  261 (283)
                      +++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|+.+..+++|+.+++..+.+..
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            9998888888888888899999999987766 778788888999999999988888889889999999999888776654


Q ss_pred             c
Q 036017          262 L  262 (283)
Q Consensus       262 ~  262 (283)
                      +
T Consensus       316 l  316 (328)
T 4fcg_A          316 L  316 (328)
T ss_dssp             -
T ss_pred             H
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.9e-27  Score=194.49  Aligned_cols=219  Identities=23%  Similarity=0.262  Sum_probs=197.2

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++++|+++++.+.         .+|..+..++ +|++|+++++.+..+|..+ .+++|++|++++|.+..++..+.+++
T Consensus        81 ~~l~~L~L~~n~l~---------~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~  150 (328)
T 4fcg_A           81 PGRVALELRSVPLP---------QFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN  150 (328)
T ss_dssp             TTCCEEEEESSCCS---------SCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred             cceeEEEccCCCch---------hcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence            57899999999887         5788888899 9999999999999888766 89999999999999999998999999


Q ss_pred             CccEEEccCCCCCCCCC-CCC---------CCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcC
Q 036017           81 KLKSVDLCNSQNLTRMP-DLS---------ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS  150 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~-~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  150 (283)
                      +|+.|++++|.....++ .+.         .+++|+.|++++|... .+|..+..+++|++|++++|.+.+ ++..+. .
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~-~  227 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-H  227 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG-G
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc-c
Confidence            99999999988777776 343         4999999999997654 788889999999999999999875 666676 8


Q ss_pred             CCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEe
Q 036017          151 LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELR  229 (283)
Q Consensus       151 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~  229 (283)
                      +++|+.|++++|...+..+..++.+++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.++
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            999999999999988888888999999999999999999999989999999999999998876 8999999999999999


Q ss_pred             cccc
Q 036017          230 MEYC  233 (283)
Q Consensus       230 l~~~  233 (283)
                      +..+
T Consensus       308 l~~~  311 (328)
T 4fcg_A          308 VPPH  311 (328)
T ss_dssp             CCGG
T ss_pred             CCHH
Confidence            9864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.2e-27  Score=213.46  Aligned_cols=250  Identities=18%  Similarity=0.146  Sum_probs=215.5

Q ss_pred             ccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCC
Q 036017           25 HLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPN  104 (283)
Q Consensus        25 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  104 (283)
                      ..+. +..++ +|+.|+++++.+..++....+++|+.+++++|.+..++ .+ .+++|+.|++.+|.....+ .+..+++
T Consensus       277 ~~~~-~~~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~  351 (606)
T 3vq2_A          277 DIVK-FHCLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPS  351 (606)
T ss_dssp             GGGS-CGGGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTT
T ss_pred             cccc-cccCC-CCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch-hhccCCC
Confidence            3344 67788 99999999999988884448999999999999998888 45 8999999999999655444 6778999


Q ss_pred             CcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCeE
Q 036017          105 LERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSWL  181 (283)
Q Consensus       105 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L  181 (283)
                      |++|++++|.....  .+..+..+++|++|++++|.+.+ ++..+. .+++|+.|++++|.+....+ ..+..+++|++|
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            99999999865443  36778899999999999998654 555565 88999999999998766655 568889999999


Q ss_pred             eecCCCCCCCCchhhhcCCCCcEEeecCCCccc--cchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017          182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKE--LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI  259 (283)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i  259 (283)
                      ++++|.+.+..+..+..+++|+.|++++|.+..  +|..++.+++|+.|++++|...+..+..+..+++|+.|++++|.+
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            999999988888889999999999999999984  677889999999999999987777778899999999999999999


Q ss_pred             ccc-cHHhhccCCCCceeeccCC
Q 036017          260 SQL-PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       260 ~~~-~~~~~~~~~L~~L~l~~c~  281 (283)
                      +.+ |..+..+++|++|++++|+
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCcCHHHccCCCcCCEEECCCCc
Confidence            965 7888999999999999885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.1e-26  Score=200.80  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++|++|++++|.+.+         ++. +..++ +|++|+++++.+..++....+++|++|++++|.+..++. +..++
T Consensus        67 l~~L~~L~Ls~n~l~~---------~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTD---------ITP-LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             CTTCCEEECCSSCCCC---------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hcCCCEEECCCCccCC---------chh-hhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            4567777777776664         222 45555 666666666655544443355555555555555554432 44444


Q ss_pred             CccEEEccCC
Q 036017           81 KLKSVDLCNS   90 (283)
Q Consensus        81 ~L~~L~l~~~   90 (283)
                      +|+.|++++|
T Consensus       135 ~L~~L~l~~n  144 (466)
T 1o6v_A          135 NLNRLELSSN  144 (466)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCEEECCCC
Confidence            4444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=3.5e-26  Score=189.17  Aligned_cols=260  Identities=16%  Similarity=0.206  Sum_probs=205.4

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhcc
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEA   79 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~   79 (283)
                      ++++++++++.+.         .+|..+.  + .+++|+++++.+..++. .+ .+++|++|++++|.+..+ +..+..+
T Consensus        32 ~l~~l~~~~~~l~---------~lp~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           32 HLRVVQCSDLGLE---------KVPKDLP--P-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             ETTEEECTTSCCC---------SCCCSCC--T-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCeEEEecCCCcc---------ccCccCC--C-CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            5677777766655         4454332  4 89999999999988776 33 899999999999999876 6778889


Q ss_pred             CCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcC--CChhHhhcCCCccCEE
Q 036017           80 FKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG--PFPAFISLSLTNLEVL  157 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L  157 (283)
                      ++|+.|++++|... .++. .-.++|++|++++|......+..+..+++|++|++++|.+..  ..+..+. .+++|+.|
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L  176 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYI  176 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEE
T ss_pred             CCCCEEECCCCcCC-ccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEE
Confidence            99999999998744 4442 123799999999987666666678899999999999988743  3444555 88999999


Q ss_pred             eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCC
Q 036017          158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~  236 (283)
                      ++++|.+.. ++..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.. 
T Consensus       177 ~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-  252 (330)
T 1xku_A          177 RIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-  252 (330)
T ss_dssp             ECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-
T ss_pred             ECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-
Confidence            999987543 44333  3789999999988877667788899999999999999996654 578899999999999754 


Q ss_pred             CCCccccCCCcccceeecCCcccccccHHh-h------ccCCCCceeeccCC
Q 036017          237 SKLPDNLGSLRSLKRLHTGKSAISQLPSSI-A------DLKQVDGLSFYGCR  281 (283)
Q Consensus       237 ~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~-~------~~~~L~~L~l~~c~  281 (283)
                      ..+|..+..+++|+.|++++|.++.++... .      ..+.++.+++.+++
T Consensus       253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            578888899999999999999999776422 2      34788899998876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=5e-27  Score=207.11  Aligned_cols=150  Identities=16%  Similarity=0.150  Sum_probs=113.7

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~   78 (283)
                      ++|++|++++|.+++        ..+..+..++ +|++|++++|.+..+++ .+ .+++|++|++++|.+..++. .+.+
T Consensus        26 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITY--------IGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             TTCCEEECCSSCCCE--------ECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             CCccEEECcCCccCc--------cChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            478999999998875        4467788899 99999999999877664 34 88999999999999987765 4888


Q ss_pred             cCCccEEEccCCCCCCC-C-CCCCCCCCCcEEeeeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017           79 AFKLKSVDLCNSQNLTR-M-PDLSETPNLERMYLLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE  155 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (283)
                      +++|+.|++++|..... . +.++.+++|++|++++|.....++ ..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~  175 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIH  175 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEE
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCc
Confidence            99999999999875542 3 357889999999999887555554 4677888888888888877654554443 444444


Q ss_pred             EEeccC
Q 036017          156 VLDLAH  161 (283)
Q Consensus       156 ~L~l~~  161 (283)
                      .|+++.
T Consensus       176 ~L~l~~  181 (549)
T 2z81_A          176 HLTLHL  181 (549)
T ss_dssp             EEEEEC
T ss_pred             eEeccc
Confidence            444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.4e-26  Score=197.83  Aligned_cols=254  Identities=22%  Similarity=0.293  Sum_probs=142.8

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++++.|++.++.+.         .++. +..++ +|++|++++|.+..++....+++|++|++++|.+..++. +.++++
T Consensus        46 ~~l~~L~l~~~~i~---------~l~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~  113 (466)
T 1o6v_A           46 DQVTTLQADRLGIK---------SIDG-VEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTN  113 (466)
T ss_dssp             HTCCEEECCSSCCC---------CCTT-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             ccccEEecCCCCCc---------cCcc-hhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCC
Confidence            46788888877665         3443 56677 888888888888777664478888888888888887765 778888


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcch--------------------hhccCCCCCcEEEecCCCCcC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS--------------------SSIENLNNLSMLRLEGCKILG  141 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~  141 (283)
                      |+.|++++|. ...++.+..+++|++|++++|.... .+                    ..+..+++|++|++++|.+.+
T Consensus       114 L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          114 LTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence            8888888876 3444557777888888777654322 11                    113445555555555555432


Q ss_pred             CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--------
Q 036017          142 PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK--------  213 (283)
Q Consensus       142 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~--------  213 (283)
                       ++. +. .+++|+.|++++|.+....+  ++.+++|++|++++|.+.. + ..+..+++|+.|++++|.+.        
T Consensus       192 -~~~-l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l  264 (466)
T 1o6v_A          192 -ISV-LA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGL  264 (466)
T ss_dssp             -CGG-GG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             -Chh-hc-cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcC
Confidence             222 22 45555555555554333222  3334444555444443332 1 22334444444444444444        


Q ss_pred             --------------ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeecc
Q 036017          214 --------------ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG  279 (283)
Q Consensus       214 --------------~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~  279 (283)
                                    .++. +..+++|+.|++++|...+ ++. +..+++|+.|++++|.+++++. +..+++|++|++++
T Consensus       265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN  340 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred             CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence                          3332 3444444444444443222 211 3444555555555555554433 44555555555555


Q ss_pred             C
Q 036017          280 C  280 (283)
Q Consensus       280 c  280 (283)
                      |
T Consensus       341 n  341 (466)
T 1o6v_A          341 N  341 (466)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.2e-27  Score=205.23  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=95.5

Q ss_pred             cCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc--cchhhhcCCCCCCeEeecCCCCCCCCch-hhhcCC
Q 036017          124 ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN--RLSASICKLKSLSWLRLYNCSKLESFPG-ILENMA  200 (283)
Q Consensus       124 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~  200 (283)
                      ..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+..  ..+..++.+++|++|++++|.+.+.++. .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            3555666666666665554454444 56666666666665543  3344556666666666666666554443 245556


Q ss_pred             CCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hhccCCCCceeec
Q 036017          201 RLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IADLKQVDGLSFY  278 (283)
Q Consensus       201 ~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~  278 (283)
                      +|+.+++++|.++ .++..+.  ++|+.|++++|.. +.+|..+..+++|+.|++++|.++.+|.. +..+++|++|+++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            6666666666664 3332221  5677777777643 35666666777788888888877777765 6677778888877


Q ss_pred             cCC
Q 036017          279 GCR  281 (283)
Q Consensus       279 ~c~  281 (283)
                      +|+
T Consensus       477 ~N~  479 (520)
T 2z7x_B          477 TNP  479 (520)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.5e-27  Score=209.07  Aligned_cols=127  Identities=16%  Similarity=0.194  Sum_probs=93.7

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCccc--chhhh
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVEL--LWEEK   76 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~--~~~~l   76 (283)
                      +++|++|++++|.+.+        ..+..+..++ +|++|++++|.+..++.. + ++++|++|++++|.+..  .+..+
T Consensus        49 l~~L~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSSRINT--------IEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCCCcCc--------cChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence            5789999999998875        4557788888 999999999998777654 3 88999999999998874  34567


Q ss_pred             hccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecC
Q 036017           77 KEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEG  136 (283)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  136 (283)
                      .++++|+.|++++|.....++  .+..+++|++|++++|......+..+..+++|++|+++.
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            788899999998887555544  577888888888887766554444444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2.1e-26  Score=204.91  Aligned_cols=244  Identities=16%  Similarity=0.136  Sum_probs=193.9

Q ss_pred             cccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017           33 LPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM  108 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L  108 (283)
                      ++ +++.++++++.+..+|...  .+++|+.|++++|.+..++. .+..+++|+.|++++|.+....+ .++.+++|++|
T Consensus        50 l~-~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GC-CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CC-CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            56 8999999999999988764  79999999999999997764 78889999999999998655444 47899999999


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC--------------
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK--------------  174 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------------  174 (283)
                      ++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.......+..              
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence            9999875533334468999999999999998775555666 8999999999998765432211111              


Q ss_pred             --C---------------------CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEec
Q 036017          175 --L---------------------KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRM  230 (283)
Q Consensus       175 --~---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l  230 (283)
                        .                     ++|+.|++++|.+.+  +..+..+++|+.|++++|.+..+ |..++.+++|+.|++
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence              1                     234445555544443  25677889999999999999844 667889999999999


Q ss_pred             ccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       231 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      ++|.. ..++..+..+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus       286 s~N~l-~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          286 SNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             TTSCC-CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             CCCCC-CCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence            99764 446667778899999999999999999888999999999999885

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=213.17  Aligned_cols=270  Identities=17%  Similarity=0.201  Sum_probs=204.3

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCC-Ccc-CCCC-CCCcceEEecCCCCcccc-hhhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPL-RTL-PTNL-STDKLVVLNLPCSNVELL-WEEKK   77 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~-~~~~L~~l~l~~~~~~~~-~~~l~   77 (283)
                      ++|++|++++|.+++        ..+..+..++ +|++|++++|.. ..+ +..+ ++++|+.|++++|.+..+ +..+.
T Consensus        24 ~~l~~LdLs~N~i~~--------i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           24 NTTERLLLSFNYIRT--------VTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             TTCCEEEEESCCCCE--------ECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCcCEEECCCCcCCc--------cChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            578999999998875        5577888899 999999999854 555 3344 889999999999998865 67788


Q ss_pred             ccCCccEEEccCCCCCCCCC-C--CCCCCCCcEEeeeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCC--
Q 036017           78 EAFKLKSVDLCNSQNLTRMP-D--LSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSL--  151 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--  151 (283)
                      ++++|+.|++++|.....++ .  ++.+++|++|++++|...... +..+..+++|++|++++|.+.+..+..+. .+  
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~  173 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQG  173 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHH
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccC
Confidence            89999999999988665443 2  788999999999988765543 35678899999999998877554443322 11  


Q ss_pred             Cc------------------------------cCEEeccCCcCcccchhhh-----------------------------
Q 036017          152 TN------------------------------LEVLDLAHCKRLNRLSASI-----------------------------  172 (283)
Q Consensus       152 ~~------------------------------L~~L~l~~~~~~~~~~~~l-----------------------------  172 (283)
                      ++                              |+.|++++|.+....+..+                             
T Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            22                              6777777664332221111                             


Q ss_pred             -------cC--CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccc
Q 036017          173 -------CK--LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN  242 (283)
Q Consensus       173 -------~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~  242 (283)
                             .+  .++|+.|++++|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|...+..+..
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence                   11  25688888888777665666778888999999999998855 456788999999999998776666778


Q ss_pred             cCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017          243 LGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR  281 (283)
Q Consensus       243 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~  281 (283)
                      +..+++|+.|++++|.++.++. .+..+++|++|++++|.
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            8899999999999999986654 57789999999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=212.80  Aligned_cols=268  Identities=16%  Similarity=0.161  Sum_probs=208.5

Q ss_pred             CCCceeEEeeccccCCCCCCCccccc-CCcCCCcccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCccc-chhh-
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHL-DQGLDYLPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVEL-LWEE-   75 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~-~~~~-   75 (283)
                      +++|++|++++|.+.+        .+ |..+..++ +|++|++++|.+..+ |..+ ++++|++|++++|.+.. ++.. 
T Consensus        47 l~~L~~LdLs~n~~~~--------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPL--------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             CCSCSEEEECTTCCCC--------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             cccCeEEeCCCCCCcc--------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence            5789999999886554        44 67788899 999999999998766 4455 89999999999998875 4443 


Q ss_pred             -hhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhcc--------------------------CC
Q 036017           76 -KKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIE--------------------------NL  126 (283)
Q Consensus        76 -l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------------~~  126 (283)
                       +.++++|+.|++++|......+  .++.+++|++|++++|......+..+.                          .+
T Consensus       118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~  197 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC  197 (844)
T ss_dssp             CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred             cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence             7789999999999988655433  478899999999988765443222221                          22


Q ss_pred             C------CCcEEEecCCCCcCCChhHhhc-------------------------------------CCCccCEEeccCCc
Q 036017          127 N------NLSMLRLEGCKILGPFPAFISL-------------------------------------SLTNLEVLDLAHCK  163 (283)
Q Consensus       127 ~------~L~~L~l~~~~~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~  163 (283)
                      +      .|+.|++++|.+....+..+..                                     ..++|+.|++++|.
T Consensus       198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~  277 (844)
T 3j0a_A          198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF  277 (844)
T ss_dssp             SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred             CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence            2      2778888777544333322210                                     13679999999988


Q ss_pred             CcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccc
Q 036017          164 RLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN  242 (283)
Q Consensus       164 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~  242 (283)
                      +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ +..+..+++|+.|++++|......+..
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence            7777777788999999999999988877777889999999999999999855 566889999999999998765555566


Q ss_pred             cCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          243 LGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       243 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      +..+++|+.|++++|.++.++.    +++|++|++++|+
T Consensus       358 ~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~  392 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK  392 (844)
T ss_dssp             SCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCC
T ss_pred             hcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCC
Confidence            8889999999999999997654    7788888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=5.6e-26  Score=205.26  Aligned_cols=223  Identities=19%  Similarity=0.190  Sum_probs=139.3

Q ss_pred             cceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           58 KLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        58 ~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      .|+.+++++|.+..+ +..+..+++|+.|++++|.....++  .+..+++|++|++++|......+..+..+++|+.|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            344444444444432 2334455566666666655433333  3455666666666665544334445556666666666


Q ss_pred             cCCCCc--CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC----C----chhhhcCCCCcE
Q 036017          135 EGCKIL--GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES----F----PGILENMARLEY  204 (283)
Q Consensus       135 ~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~----~~~~~~~~~L~~  204 (283)
                      ++|.+.  +..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+...    +    ...+..+++|+.
T Consensus       462 ~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             TTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            666543  23444454 677778888877776655555567777888888877766532    1    123567778888


Q ss_pred             EeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hh-ccCCCCceeeccCC
Q 036017          205 IDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IA-DLKQVDGLSFYGCR  281 (283)
Q Consensus       205 l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~-~~~~L~~L~l~~c~  281 (283)
                      +++++|.++.+|.. +..+++|+.|++++|......+..+..+++|+.|++++|.++.++.. +. .+++|+++++++|+
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence            88888888777654 67788888888887665543344467778888888888888866543 34 67888888888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=4.9e-26  Score=205.64  Aligned_cols=271  Identities=19%  Similarity=0.170  Sum_probs=161.4

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchh-hhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWE-EKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~-~l~~   78 (283)
                      +++++|++++|.+.+        ..+..+..++ +|++|+++++.+..+++. + ++++|++|++++|.+..++. .+.+
T Consensus        25 ~~l~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR--------LPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCC--------CCGGGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCC--------cCHHHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            367778887777764        3334566677 777777777776555433 2 67777777777777776664 3666


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh-cCCCccCE
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS-LSLTNLEV  156 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~  156 (283)
                      +++|+.|++++|......+ .++.+++|++|++++|......+..+..+++|++|++++|.+.+..+..+. ..+++|+.
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            7777777777776433332 466777777777777665554455566677777777777665543333321 13456666


Q ss_pred             EeccCCcCcccchh---------------------------------------------------hhcCCC--CCCeEee
Q 036017          157 LDLAHCKRLNRLSA---------------------------------------------------SICKLK--SLSWLRL  183 (283)
Q Consensus       157 L~l~~~~~~~~~~~---------------------------------------------------~l~~~~--~L~~L~l  183 (283)
                      |++++|.+.+..+.                                                   .+..++  +|++|++
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            66666654333222                                                   222222  2555555


Q ss_pred             cCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccEEecccccCCC-----CCcc----ccCCCcccceee
Q 036017          184 YNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKELRMEYCYKLS-----KLPD----NLGSLRSLKRLH  253 (283)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~-----~l~~----~~~~l~~L~~L~  253 (283)
                      ++|.+.+..+..+..+++|+++++++|.+.. .+..+..+++|+.|++++|....     .+|.    .+..+++|+.|+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            5544444333445555555555555555552 23344555556666655433221     2222    456677888888


Q ss_pred             cCCccccccc-HHhhccCCCCceeeccCC
Q 036017          254 TGKSAISQLP-SSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       254 l~~~~i~~~~-~~~~~~~~L~~L~l~~c~  281 (283)
                      +++|.++.++ ..+..+++|++|++++|.
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCc
Confidence            8888887554 457788889999888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=205.63  Aligned_cols=250  Identities=17%  Similarity=0.187  Sum_probs=212.5

Q ss_pred             ccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCC
Q 036017           25 HLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETP  103 (283)
Q Consensus        25 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (283)
                      ..+..+..++ +|+.|+++++.+..++..+ .+ +|+.+++++|.+..++.  ..+++|+.|++.++.....++. ..++
T Consensus       273 ~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~  347 (570)
T 2z63_A          273 DIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP  347 (570)
T ss_dssp             CSTTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred             hchhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence            4567778888 9999999999998888777 66 99999999999997765  4789999999999886554444 7899


Q ss_pred             CCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCe
Q 036017          104 NLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSW  180 (283)
Q Consensus       104 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~  180 (283)
                      +|++|++++|.....  .+..+..+++|++|++++|.+.+ ++..+. .+++|+.|++++|.+....+ ..+..+++|++
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            999999999875543  26778899999999999998765 444455 89999999999987665544 35788999999


Q ss_pred             EeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcc
Q 036017          181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA  258 (283)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  258 (283)
                      |++++|.+.+..+..+..+++|+.|++++|.+.  .+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            999999988878888899999999999999987  588888999999999999998777668889999999999999999


Q ss_pred             ccccc-HHhhccCCCCceeeccCC
Q 036017          259 ISQLP-SSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       259 i~~~~-~~~~~~~~L~~L~l~~c~  281 (283)
                      ++.++ ..+..+++|++|++++|+
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCHHHhhcccCCcEEEecCCc
Confidence            99765 467899999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=7.7e-26  Score=187.27  Aligned_cols=240  Identities=18%  Similarity=0.239  Sum_probs=162.5

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  113 (283)
                      +++.++++++.+..+|... .++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            7999999999998888765 479999999999999774 468899999999999998655444 5889999999999987


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc--cchhhhcCC----------------
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN--RLSASICKL----------------  175 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~----------------  175 (283)
                      ... .+|..+.  ++|++|++++|.+.+..+..+. .+++|+.|++++|.+..  ..+..+..+                
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP  188 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGS-SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhC-CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence            644 5554433  7899999999887653333344 88899999999887632  333334433                


Q ss_pred             ----CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccc
Q 036017          176 ----KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLK  250 (283)
Q Consensus       176 ----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~  250 (283)
                          ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.. +.+|..+..+++|+
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~  267 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQ  267 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCC
T ss_pred             ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCC
Confidence                345555555554444444455566666666666666664443 456666666666666543 35555566666666


Q ss_pred             eeecCCcccccccH-Hhhc------cCCCCceeeccCC
Q 036017          251 RLHTGKSAISQLPS-SIAD------LKQVDGLSFYGCR  281 (283)
Q Consensus       251 ~L~l~~~~i~~~~~-~~~~------~~~L~~L~l~~c~  281 (283)
                      .|++++|.++.++. .+..      .+.|+.|++.+|+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            66666666664442 1211      3456666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=3e-26  Score=202.70  Aligned_cols=266  Identities=15%  Similarity=0.141  Sum_probs=170.2

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhcc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEA   79 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~   79 (283)
                      ++|++|++++|.+.+        ..+..+..++ +|++|++++|.+..+++ .+ ++++|++|++++|.+..++..  .+
T Consensus        52 ~~L~~L~Ls~N~i~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l  120 (562)
T 3a79_B           52 PRTKALSLSQNSISE--------LRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM  120 (562)
T ss_dssp             TTCCEEECCSSCCCC--------CCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred             CCcCEEECCCCCccc--------cChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence            456777777777664        3345667777 77777777777766533 33 677777777777777766654  67


Q ss_pred             CCccEEEccCCCCCCC-CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCC--cEEEecCCCC--cCCChhHhhc----
Q 036017           80 FKLKSVDLCNSQNLTR-MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNL--SMLRLEGCKI--LGPFPAFISL----  149 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~----  149 (283)
                      ++|+.|++++|..... ++ .++.+++|++|++++|.....   .+..+++|  ++|++++|.+  .+..+..+..    
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence            7777777777764432 22 466777777777776654332   22233333  5555555544  2111111100    


Q ss_pred             ----------------------------------------------------------------------------CCCc
Q 036017          150 ----------------------------------------------------------------------------SLTN  153 (283)
Q Consensus       150 ----------------------------------------------------------------------------~~~~  153 (283)
                                                                                                  ..++
T Consensus       198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  277 (562)
T 3a79_B          198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP  277 (562)
T ss_dssp             EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred             eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence                                                                                        1124


Q ss_pred             cCEEeccCCcCcccchhhh-----------------------------------------------------cCCCCCCe
Q 036017          154 LEVLDLAHCKRLNRLSASI-----------------------------------------------------CKLKSLSW  180 (283)
Q Consensus       154 L~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~  180 (283)
                      |+.|++++|.+.+.+|..+                                                     ..+++|++
T Consensus       278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~  357 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred             ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence            5555555544332222211                                                     56788999


Q ss_pred             EeecCCCCCCCCchhhhcCCCCcEEeecCCCccccc---hhhhcCCCccEEecccccCCCCCccc-cCCC----------
Q 036017          181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELP---SSVEHLEGLKELRMEYCYKLSKLPDN-LGSL----------  246 (283)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~~l~~~-~~~l----------  246 (283)
                      |++++|.+.+..+..+..+++|+.|++++|.++.++   ..+..+++|+.|++++|...+.+|.. +..+          
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            999998888877888889999999999999998554   45788999999999998766534432 3332          


Q ss_pred             ------------cccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          247 ------------RSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       247 ------------~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                                  ++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus       438 n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             SCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred             CCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence                        46666777777777777666677788888877763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-26  Score=189.52  Aligned_cols=225  Identities=19%  Similarity=0.245  Sum_probs=187.3

Q ss_pred             cCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccc---hhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEe
Q 036017           35 EELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELL---WEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMY  109 (283)
Q Consensus        35 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  109 (283)
                      +++++|+++++.+..++...  ++++|+.|++++|.+..+   +..+..+++|+.|++++|........+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            38999999999998888753  899999999999988754   4566778999999999997543223578899999999


Q ss_pred             eeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCC
Q 036017          110 LLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       110 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      +++|......+ ..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            99876544332 4678899999999999987765566565 88999999999987665 467778889999999999998


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCc-ccceeecCCcccc
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLR-SLKRLHTGKSAIS  260 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~i~  260 (283)
                      +.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|...+..+..+..++ +|+.|++++|.++
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            887667788899999999999999996654 578899999999999987777777888885 8999999999887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=2.3e-25  Score=191.73  Aligned_cols=207  Identities=18%  Similarity=0.153  Sum_probs=145.0

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++|++|+++++.+.+         +| .+..++ +|++|+++++.+..++ ...+++|++|++++|.+..++  +.+++
T Consensus        41 l~~L~~L~Ls~n~l~~---------~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~  106 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD---------MT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLT  106 (457)
T ss_dssp             HTTCCEEECCSSCCCC---------CT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred             cCCCCEEEccCCCccc---------Ch-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCC
Confidence            3678899998888774         34 466778 8888888888887775 447888888888888888764  67788


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA  160 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (283)
                      +|+.|++++|.... ++ ++.+++|++|++++|.... +  .+..+++|++|++++|...+.++  +. .+++|+.|+++
T Consensus       107 ~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ls  178 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD--VT-PQTQLTTLDCS  178 (457)
T ss_dssp             TCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC--CT-TCTTCCEEECC
T ss_pred             cCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc--cc-cCCcCCEEECC
Confidence            88888888886443 43 7778888888888766543 2  25677777888887775444442  33 66777777777


Q ss_pred             CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017          161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +|.+.. ++  ++.+++|+.|++++|.+.+.   .+..+++|+.|++++|.++.+|  ++.+++|+.|++++|...+
T Consensus       179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence            766544 22  56667777777777666543   2556677777777777777665  5666777777777765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=198.21  Aligned_cols=263  Identities=17%  Similarity=0.121  Sum_probs=172.7

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccch-hhhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLW-EEKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~-~~l~~   78 (283)
                      +++++|++++|.+++        ..+..+..++ +|++|++++|.+..++.. + ++++|++|++++|.+..++ ..+.+
T Consensus        28 ~~l~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH--------LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SSCCEEECCSCCCCE--------ECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccEEEccCCccCc--------cChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            468899999888875        3455788899 999999999998777643 3 8899999999999988765 56788


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc--
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL--  154 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--  154 (283)
                      +++|+.|++.+|......+ .++.+++|++|++++|.... .+|..+..+++|++|++++|.+.+..+..+. .+++|  
T Consensus        99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~  177 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPL  177 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTT
T ss_pred             ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccch
Confidence            9999999999987443333 48889999999999887654 4678888999999999999887654444443 44444  


Q ss_pred             --CEEeccCCcCcccchhh-------------------------------------------------------------
Q 036017          155 --EVLDLAHCKRLNRLSAS-------------------------------------------------------------  171 (283)
Q Consensus       155 --~~L~l~~~~~~~~~~~~-------------------------------------------------------------  171 (283)
                        +.+++++|.+....+..                                                             
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l  257 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  257 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred             hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence              56666665543322222                                                             


Q ss_pred             --------------------hcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecc
Q 036017          172 --------------------ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME  231 (283)
Q Consensus       172 --------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~  231 (283)
                                          +..+++|++|++.+|.+. .++..+..+ +|+++++++|.+..+|.  ..+++|+.|+++
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~  333 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFT  333 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCc
Confidence                                223344555555544333 244444444 55555555555554443  244455555555


Q ss_pred             cccCCCCCccccCCCcccceeecCCcccccc---cHHhhccCCCCceeeccC
Q 036017          232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQL---PSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~~~~L~~L~l~~c  280 (283)
                      +|......+.  ..+++|+.|++++|.++.+   +..+..+++|++|++++|
T Consensus       334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN  383 (570)
T ss_dssp             SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred             CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence            5443332222  4566677777777666633   455666666666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=5.6e-25  Score=197.00  Aligned_cols=128  Identities=18%  Similarity=0.161  Sum_probs=98.9

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchh-hhhcc
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWE-EKKEA   79 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~-~l~~~   79 (283)
                      ++++|++++|.+++        ..+..+..++ +|++|++++|.+..+++. + ++++|++|++++|.+..++. .+.++
T Consensus        53 ~~~~LdLs~N~i~~--------l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           53 STKNLDLSFNPLRH--------LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             TCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             CCCEEEeeCCCCCC--------CCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            68899999988874        3345788898 999999999998887664 3 78999999999999888764 46788


Q ss_pred             CCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCC
Q 036017           80 FKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKI  139 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  139 (283)
                      ++|+.|++++|......+ .++.+++|++|++++|.... ..|..+..+++|++|++++|.+
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999999998887443333 47888888888888876543 3556667778888888777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=4.6e-25  Score=189.80  Aligned_cols=250  Identities=20%  Similarity=0.196  Sum_probs=152.9

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF   80 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~   80 (283)
                      +++|++|++++|.+.+         ++  +..++ +|++|++++|.+..++ ...+++|++|++++|.+..++  +..++
T Consensus        63 l~~L~~L~Ls~n~l~~---------~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~  127 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT---------LD--LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP  127 (457)
T ss_dssp             CTTCSEEECCSSCCSC---------CC--CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             cCCCCEEEccCCcCCe---------Ec--cccCC-CCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence            4678888888888774         22  56677 8888888888776664 337778888888888777664  66677


Q ss_pred             CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017           81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA  160 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (283)
                      +|+.|++++|.... + .++.+++|++|++++|...+.+  .+..+++|++|++++|.+.+ ++  +. .+++|+.|+++
T Consensus       128 ~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~  199 (457)
T 3bz5_A          128 LLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCD  199 (457)
T ss_dssp             TCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECC
T ss_pred             cCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECc
Confidence            77777777776433 3 3566667777777666444443  34555666666666665543 33  22 45556666655


Q ss_pred             CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh----------------------
Q 036017          161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS----------------------  218 (283)
Q Consensus       161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~----------------------  218 (283)
                      +|.+...   .++.+++|++|++++|.+.+ +|  +..+++|+.+++++|.++.++..                      
T Consensus       200 ~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~  273 (457)
T 3bz5_A          200 TNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH  273 (457)
T ss_dssp             SSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred             CCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence            5544332   24445555555555554443 22  44455555555555544432210                      


Q ss_pred             --------hhcCCCccEEecccccCCCCCcc--------ccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          219 --------VEHLEGLKELRMEYCYKLSKLPD--------NLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       219 --------~~~~~~L~~L~l~~~~~~~~l~~--------~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                              ++.+++|+.|++++|...+.+|.        .+..+++|+.|++++|.++.++  +..+++|+.|++++++
T Consensus       274 n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSC
T ss_pred             CccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCC
Confidence                    23446666666666655443332        1345567788888888887763  7778888888887664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.9e-26  Score=188.76  Aligned_cols=242  Identities=15%  Similarity=0.175  Sum_probs=148.4

Q ss_pred             CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-C-CCCCCCCcEEee
Q 036017           36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-D-LSETPNLERMYL  110 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l  110 (283)
                      +|++|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|... .++ . ++.+++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence            67777777777666554 22 6677777777777666553 34666677777777766633 333 2 566677777777


Q ss_pred             eCCCCCCcchh--hccCCCCCcEEEecCCCCcCCC-hhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017          111 LNCTNLPFISS--SIENLNNLSMLRLEGCKILGPF-PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       111 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      ++|... .++.  .+..+++|++|++++|...+.+ +..+. .+++|+.|++++|.+....+..++.+++|++|++++|.
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            665433 3333  4566677777777766322223 23343 66677777777766555556666666777777777665


Q ss_pred             CCCCCc-hhhhcCCCCcEEeecCCCccccch----hhhcCCCccEEecccccCCC----CCccccCCCcccceeecCCcc
Q 036017          188 KLESFP-GILENMARLEYIDLRLTAIKELPS----SVEHLEGLKELRMEYCYKLS----KLPDNLGSLRSLKRLHTGKSA  258 (283)
Q Consensus       188 ~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~  258 (283)
                      +.. ++ ..+..+++|+.+++++|.++.++.    .....+.++.+++.++....    .+|+.+..+++|+.|++++|.
T Consensus       210 l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          210 HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            532 33 233346667777777766663221    11234445555555543321    245556778888888888888


Q ss_pred             cccccHHh-hccCCCCceeeccCC
Q 036017          259 ISQLPSSI-ADLKQVDGLSFYGCR  281 (283)
Q Consensus       259 i~~~~~~~-~~~~~L~~L~l~~c~  281 (283)
                      ++.+|..+ ..+++|++|++++|+
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCC
Confidence            88887764 788888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.2e-25  Score=179.65  Aligned_cols=246  Identities=20%  Similarity=0.253  Sum_probs=189.9

Q ss_pred             ccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCC-C-CCCCCCCCcEE
Q 036017           34 PEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRM-P-DLSETPNLERM  108 (283)
Q Consensus        34 ~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L  108 (283)
                      |+++++|+++++.+..++.. + .+++|+.|++++|.+..+ +..+.++++|+.|++++|.....+ + .+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            33899999999999877753 3 889999999999999876 567888999999999998744444 3 57889999999


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  188 (283)
                      ++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            9999876665667788899999999999987653334454 789999999999887665555688899999999999888


Q ss_pred             CCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHh
Q 036017          189 LESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSI  266 (283)
Q Consensus       189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~  266 (283)
                      .+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+...+.+.. .....++.+..+.+.+. ..|..+
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            877778888999999999999999977654 788999999999998765432211 11134555556666665 556554


Q ss_pred             h--ccCCCCceeeccCC
Q 036017          267 A--DLKQVDGLSFYGCR  281 (283)
Q Consensus       267 ~--~~~~L~~L~l~~c~  281 (283)
                      .  .+..++..++.+|+
T Consensus       269 ~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          269 AGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             TTCBGGGSCGGGSCCC-
T ss_pred             CCcChhhcCHHHhccCC
Confidence            3  35667777787774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=185.38  Aligned_cols=248  Identities=17%  Similarity=0.141  Sum_probs=199.3

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhh-hhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEE-KKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~-l~~   78 (283)
                      ++|++|++++|.+.+        ..+..+..++ +|++|+++++.+..++. .+ ++++|++|++++|.+..++.. +.+
T Consensus        52 ~~L~~L~l~~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  122 (353)
T 2z80_A           52 EAVKSLDLSNNRITY--------ISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP  122 (353)
T ss_dssp             TTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred             ccCcEEECCCCcCcc--------cCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence            478999999998874        3344788899 99999999999987754 34 899999999999999988765 788


Q ss_pred             cCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017           79 AFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE  155 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (283)
                      +++|+.|++++|.......  .+..+++|++|++++|.....+ +..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~  201 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVS  201 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCC
Confidence            9999999999997553322  4788999999999998544444 55688999999999999988776677776 899999


Q ss_pred             EEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh---hhcCCCCcEEeecCCCcc-----ccchhhhcCCCccE
Q 036017          156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI---LENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKE  227 (283)
Q Consensus       156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~  227 (283)
                      .|++++|.+.......+..+++|++|++++|.+.+..+..   ......++.+++.++.+.     .+|..+..+++|+.
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            9999998864443334556899999999998877643322   234567888888888776     57778899999999


Q ss_pred             EecccccCCCCCccc-cCCCcccceeecCCcccc
Q 036017          228 LRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       228 L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~  260 (283)
                      |++++|... .+|.. +..+++|+.|++++|.++
T Consensus       282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            999998655 66665 588999999999999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=8.4e-26  Score=184.96  Aligned_cols=255  Identities=18%  Similarity=0.170  Sum_probs=200.8

Q ss_pred             CCceeEEeeccccCCCCCCCcccccC-CcCCCcccCceEEEecCCCCCcc---CCCC-CCCcceEEecCCCCcccchhhh
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLD-QGLDYLPEELRYLHWHGYPLRTL---PTNL-STDKLVVLNLPCSNVELLWEEK   76 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~-~~~~L~~l~l~~~~~~~~~~~l   76 (283)
                      ++|++|++++|.+..         ++ ..+..++ +|++|+++++.+..+   +..+ .+++|++|++++|.+..++..+
T Consensus        28 ~~l~~L~L~~n~l~~---------i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~   97 (306)
T 2z66_A           28 SSATRLELESNKLQS---------LPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF   97 (306)
T ss_dssp             TTCCEEECCSSCCCC---------CCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred             CCCCEEECCCCccCc---------cCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence            478999999998874         44 4578899 999999999998654   2233 7899999999999999888888


Q ss_pred             hccCCccEEEccCCCCCCCC--CCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCc
Q 036017           77 KEAFKLKSVDLCNSQNLTRM--PDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTN  153 (283)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~  153 (283)
                      ..+++|+.|++++|......  ..+..+++|++|++++|......+..+..+++|++|++++|.+.+ ..|..+. .+++
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~  176 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRN  176 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTT
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-hCcC
Confidence            89999999999999755443  257889999999999987666667778899999999999998765 3555565 8899


Q ss_pred             cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcC-CCccEEecc
Q 036017          154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHL-EGLKELRME  231 (283)
Q Consensus       154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~-~~L~~L~l~  231 (283)
                      |+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.. .+..+..+ ++|+.|+++
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            9999999998877777788999999999999998877666678889999999999999984 45556777 499999999


Q ss_pred             cccCCCCCc--cccCCCcccceeecCCcccc-cccHHhh
Q 036017          232 YCYKLSKLP--DNLGSLRSLKRLHTGKSAIS-QLPSSIA  267 (283)
Q Consensus       232 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~-~~~~~~~  267 (283)
                      +|+....-.  ....-+...+.+.+..+.+. ..|..+.
T Consensus       257 ~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             CCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            987654321  11112334455555555555 4455443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.7e-24  Score=185.30  Aligned_cols=241  Identities=20%  Similarity=0.225  Sum_probs=138.4

Q ss_pred             ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017           37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT  114 (283)
Q Consensus        37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  114 (283)
                      ...++.++..+..+|... .++++.|++++|.+..+ +..+.++++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            345555555555555433 25666666666666654 3445566666666666665433332 45666666666666655


Q ss_pred             CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCCc
Q 036017          115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFP  193 (283)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~  193 (283)
                      .....+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.....++. .+..+++|++|++++|.+.+ ++
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence            4333333455666666666666665432222333 566666666666544443333 35566666666666665543 22


Q ss_pred             hhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCC
Q 036017          194 GILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQ  271 (283)
Q Consensus       194 ~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~  271 (283)
                       .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. .+..+++
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence             345566666666666666644 4445666666666666665554445556666666666666666665543 3455666


Q ss_pred             CCceeeccCC
Q 036017          272 VDGLSFYGCR  281 (283)
Q Consensus       272 L~~L~l~~c~  281 (283)
                      |++|++++|+
T Consensus       292 L~~L~L~~Np  301 (452)
T 3zyi_A          292 LVELHLHHNP  301 (452)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEccCCC
Confidence            6666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.9e-24  Score=174.05  Aligned_cols=221  Identities=15%  Similarity=0.124  Sum_probs=178.3

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTN  115 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  115 (283)
                      +.++.++..+..+|... .++|+.|+++++.+..++ ..+..+++|+.|++++|......+ .+..+++|++|++++|..
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            57788888888887644 579999999999999776 457889999999999987554434 588899999999999863


Q ss_pred             CCc-chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017          116 LPF-ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG  194 (283)
Q Consensus       116 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  194 (283)
                      ... .+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+....+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence            444 466788899999999999987764455555 789999999999887666666678899999999999877754445


Q ss_pred             hhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          195 ILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       195 ~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      .+..+++|+.+++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            678889999999999999855 667888999999999998766544456888999999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3e-24  Score=184.32  Aligned_cols=222  Identities=18%  Similarity=0.219  Sum_probs=99.7

Q ss_pred             CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017           36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL  111 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~  111 (283)
                      +++.|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            45555555555544332 12 4555555555555554433 234445555555555554222211 24445555555555


Q ss_pred             CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC
Q 036017          112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES  191 (283)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  191 (283)
                      +|......+..+..+++|++|+++++...+.++......+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence            544332222234445555555555433333233221114455555555554432 222 234445555555555444443


Q ss_pred             CchhhhcCCCCcEEeecCCCccccc-hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017          192 FPGILENMARLEYIDLRLTAIKELP-SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI  259 (283)
Q Consensus       192 ~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i  259 (283)
                      .+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            3444445555555555555554332 2234445555555555443333333344445555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=190.43  Aligned_cols=238  Identities=16%  Similarity=0.100  Sum_probs=175.2

Q ss_pred             CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcE
Q 036017           30 LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLER  107 (283)
Q Consensus        30 ~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  107 (283)
                      ...++ +|++|+++++.+..+++ .+ .+++|+.|++++|.+...+. +..+++|+.|++++|... .   +...++|++
T Consensus        30 ~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~---l~~~~~L~~  103 (317)
T 3o53_A           30 RQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-E---LLVGPSIET  103 (317)
T ss_dssp             HTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-E---EEECTTCCE
T ss_pred             hccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-c---ccCCCCcCE
Confidence            44566 88888888888877653 23 78888888888888876554 777888888888888633 2   224478888


Q ss_pred             EeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh-cCCCCCCeEeecCC
Q 036017          108 MYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNC  186 (283)
Q Consensus       108 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~  186 (283)
                      |++++|......+   ..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+ ..+++|++|++++|
T Consensus       104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            8888876543322   3467888888888887653343444 67888888888887766555554 46788888888887


Q ss_pred             CCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccH
Q 036017          187 SKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPS  264 (283)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~  264 (283)
                      .+... + ....+++|+.|++++|.++.++..+..+++|+.|++++|.. +.+|..+..+++|+.|++++|.++  .++.
T Consensus       180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             cCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            76543 2 22347888889998888888877788888899999988754 457777888888889999888887  6667


Q ss_pred             HhhccCCCCceeeccC
Q 036017          265 SIADLKQVDGLSFYGC  280 (283)
Q Consensus       265 ~~~~~~~L~~L~l~~c  280 (283)
                      .+..++.|+.+++.++
T Consensus       257 ~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          257 FFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHTCHHHHHHHHHHH
T ss_pred             HHhccccceEEECCCc
Confidence            7777777777776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-26  Score=191.19  Aligned_cols=238  Identities=16%  Similarity=0.064  Sum_probs=193.5

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|++++|.+.+        ..+..+..++ +|++|++++|.+...++...+++|+.|++++|.+..++    ..++
T Consensus        34 ~~L~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~  100 (317)
T 3o53_A           34 WNVKELDLSGNPLSQ--------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPS  100 (317)
T ss_dssp             GGCSEEECTTSCCCC--------CCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTT
T ss_pred             CCCCEEECcCCccCc--------CCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCC
Confidence            589999999998885        4456788899 99999999999876655558999999999999998765    3589


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      |+.|++++|......  ...+++|++|++++|......+..+..+++|++|++++|.+.+..+..+...+++|+.|++++
T Consensus       101 L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          101 IETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCEEECCSSCCSEEE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECCCCccCCcC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            999999998754332  234788999999998766555557788899999999999887654555533689999999999


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCc
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLP  240 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~  240 (283)
                      |.+... + ....+++|++|++++|.+.+ ++..+..+++|+.+++++|.++.+|..+..+++|+.|++++|+.. ..++
T Consensus       179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             SCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             CcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            886544 3 23458899999999987765 455588899999999999999999988889999999999998877 5677


Q ss_pred             cccCCCcccceeecCCc
Q 036017          241 DNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       241 ~~~~~l~~L~~L~l~~~  257 (283)
                      ..+..+++|+.++++++
T Consensus       256 ~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          256 DFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHHTCHHHHHHHHHHH
T ss_pred             HHHhccccceEEECCCc
Confidence            78888999999988853

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=7.9e-24  Score=182.35  Aligned_cols=225  Identities=19%  Similarity=0.192  Sum_probs=178.0

Q ss_pred             ccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017           34 PEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY  109 (283)
Q Consensus        34 ~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  109 (283)
                      |+++++|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            3489999999999877644 33 8899999999999988765 567789999999999988544333 378899999999


Q ss_pred             eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017          110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL  189 (283)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  189 (283)
                      +++|......+..+..+++|+.|+++++...+.++......+++|+.|++++|.+... + .+..+++|++|++++|.+.
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence            9988765444456788999999999986655555554333788999999999876543 3 4678889999999998888


Q ss_pred             CCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          190 ESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       190 ~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +..+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77778888999999999999999855 445788899999999998665544566778899999999998765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=9.9e-24  Score=181.14  Aligned_cols=242  Identities=20%  Similarity=0.259  Sum_probs=185.3

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  113 (283)
                      ..+.++..+..+..+|..+ .++++.|++++|.+..++ ..+.++++|+.|++++|.+....+ .+..+++|++|++++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4567777777788887655 368888999999888765 567788899999998887443332 5788899999999887


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCC
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESF  192 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~  192 (283)
                      ......+..+..+++|++|++++|.+....+..+. .+++|+.|+++++.....++. .+..+++|++|++++|.+.. +
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  200 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I  200 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence            65544444678888999999998887653333444 788999999988665555444 57788899999999877663 4


Q ss_pred             chhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccC
Q 036017          193 PGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLK  270 (283)
Q Consensus       193 ~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~  270 (283)
                      + .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. .+..++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            3 467788899999999988855 5567888999999999887666666778888899999999999887664 457788


Q ss_pred             CCCceeeccCC
Q 036017          271 QVDGLSFYGCR  281 (283)
Q Consensus       271 ~L~~L~l~~c~  281 (283)
                      +|++|++++|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            99999988875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.5e-25  Score=183.91  Aligned_cols=242  Identities=21%  Similarity=0.210  Sum_probs=191.0

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc--chhhhh-------ccCCccEEEccCCCCCCCCC-CC-
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL--LWEEKK-------EAFKLKSVDLCNSQNLTRMP-DL-   99 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~l~-------~~~~L~~L~l~~~~~~~~~~-~~-   99 (283)
                      ...+ +|++|+++++.+ .+|... ...|+.++++++.+..  ++..+.       ++++|++|++++|.....++ .+ 
T Consensus        40 ~~~~-~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGR-SLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEE-ECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCC-CceeEeeccccc-ccHHHH-HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            3455 788899999988 666543 1228999999998863  444443       68999999999998776666 34 


Q ss_pred             -CCCCCCcEEeeeCCCCCCcchhhccCC-----CCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc--chhh
Q 036017          100 -SETPNLERMYLLNCTNLPFISSSIENL-----NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR--LSAS  171 (283)
Q Consensus       100 -~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~  171 (283)
                       ..+++|++|++++|..... |..+..+     ++|++|++++|.+.+..+..+. .+++|+.|++++|++.+.  .+..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHH
Confidence             8899999999999876554 5555555     8999999999998765556666 899999999999986554  3334


Q ss_pred             h--cCCCCCCeEeecCCCCCC--CCc-hhhhcCCCCcEEeecCCCccccc--hhhhcCCCccEEecccccCCCCCccccC
Q 036017          172 I--CKLKSLSWLRLYNCSKLE--SFP-GILENMARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLPDNLG  244 (283)
Q Consensus       172 l--~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~~~~  244 (283)
                      +  ..+++|++|++++|.+..  ..+ ..+..+++|++|++++|.++..+  ..+..+++|+.|++++|... .+|..+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            4  789999999999988763  222 34457899999999999998644  34566899999999998754 7777665


Q ss_pred             CCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          245 SLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       245 ~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                        ++|+.|++++|.++++|. +..+++|++|++++++
T Consensus       274 --~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             --SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             --CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence              899999999999998877 8899999999999885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.9e-25  Score=189.89  Aligned_cols=235  Identities=15%  Similarity=0.109  Sum_probs=166.1

Q ss_pred             CCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017           31 DYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM  108 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  108 (283)
                      ..+| +|++|+++++.+..+++ .+ .+++|+.|++++|.+...+. +..+++|+.|++++|.+. .+   ...++|+.|
T Consensus        31 ~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l---~~~~~L~~L  104 (487)
T 3oja_A           31 QSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-EL---LVGPSIETL  104 (487)
T ss_dssp             TTGG-GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EE---EECTTCCEE
T ss_pred             ccCC-CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CC---CCCCCcCEE
Confidence            3445 78888888888766653 33 77888888888888775544 677888888888877633 22   233778888


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhc-CCCCCCeEeecCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCS  187 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~  187 (283)
                      ++++|......+   ..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+. .+++|++|++++|.
T Consensus       105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            888776544322   3467788888888877664454554 678888888888877666666554 67888888888877


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccHH
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPSS  265 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~  265 (283)
                      +.+. + ....+++|+.|++++|.++.+|..+..+++|+.|++++|... .+|..+..+++|+.|++++|.++  .+|..
T Consensus       181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            6643 2 233577888888888888877777778888888888886544 46777777888888888888877  66666


Q ss_pred             hhccCCCCceeec
Q 036017          266 IADLKQVDGLSFY  278 (283)
Q Consensus       266 ~~~~~~L~~L~l~  278 (283)
                      +..++.++.+++.
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            6666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=8.6e-23  Score=180.97  Aligned_cols=238  Identities=18%  Similarity=0.176  Sum_probs=145.5

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCc
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKL   82 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L   82 (283)
                      +++.|+++++.++         .+|..+.  + +|++|++++|.+..++.  .+++|+.|++++|.+..++.   .+++|
T Consensus        41 ~l~~L~ls~n~L~---------~lp~~l~--~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L  103 (622)
T 3g06_A           41 GNAVLNVGESGLT---------TLPDCLP--A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGL  103 (622)
T ss_dssp             CCCEEECCSSCCS---------CCCSCCC--T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTC
T ss_pred             CCcEEEecCCCcC---------ccChhhC--C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCC
Confidence            3556666666555         3343332  3 56666666665555554  34556666666665555543   34555


Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhc-----------------cCCCCCcEEEecCCCCcCCChh
Q 036017           83 KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSI-----------------ENLNNLSMLRLEGCKILGPFPA  145 (283)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~  145 (283)
                      +.|++++|.. ..++.  .+++|+.|++++|.. ..+|..+                 ..+++|+.|++++|.+.. +| 
T Consensus       104 ~~L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~l-~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~-  177 (622)
T 3g06_A          104 LELSIFSNPL-THLPA--LPSGLCKLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP-  177 (622)
T ss_dssp             CEEEECSCCC-CCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC-
T ss_pred             CEEECcCCcC-CCCCC--CCCCcCEEECCCCCC-CcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc-
Confidence            5555555542 22222  334444444444332 1222110                 122345555555554432 33 


Q ss_pred             HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017          146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL  225 (283)
Q Consensus       146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L  225 (283)
                        . .+++|+.|++++|.+.. ++.   ..++|+.|++.+|.+.. ++.   .+++|+.|++++|.++.+|   ..+++|
T Consensus       178 --~-~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L  243 (622)
T 3g06_A          178 --M-LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSEL  243 (622)
T ss_dssp             --C-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred             --c-cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcC
Confidence              1 45667777777765432 222   24567777777765553 332   3478999999999999887   567889


Q ss_pred             cEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017          226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      +.|++++|. ++.+|.   .+++|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus       244 ~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          244 KELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence            999999975 445665   5688999999999999999999999999999999885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-24  Score=187.66  Aligned_cols=236  Identities=16%  Similarity=0.064  Sum_probs=195.3

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|++++|.+.+        ..|..+..++ +|++|++++|.+...++...+++|+.|++++|.+..++.    .++
T Consensus        34 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~  100 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ--------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPS  100 (487)
T ss_dssp             GGCCEEECCSSCCCC--------CCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred             CCccEEEeeCCcCCC--------CCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCC
Confidence            489999999999886        4467788999 999999999998665555589999999999999987653    489


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      |+.|++++|.+....+  ..+++|+.|++++|......+..+..+++|+.|++++|.+.+..+..+...+++|+.|++++
T Consensus       101 L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          101 IETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            9999999987544322  35789999999998877666777888999999999999987766666543689999999999


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCc
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLP  240 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~  240 (283)
                      |.+... + ....+++|+.|++++|.+.+ +++.+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. +.+|
T Consensus       179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             SCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             Cccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence            886554 2 23468999999999988775 455588999999999999999999988889999999999998876 4667


Q ss_pred             cccCCCcccceeecC
Q 036017          241 DNLGSLRSLKRLHTG  255 (283)
Q Consensus       241 ~~~~~l~~L~~L~l~  255 (283)
                      ..+..++.|+.++++
T Consensus       256 ~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          256 DFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCcEEecc
Confidence            778888999988875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.6e-22  Score=173.80  Aligned_cols=226  Identities=19%  Similarity=0.237  Sum_probs=105.6

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      +|++|++++|.+..+|.+..+++|+++++++|.+..++..   ..+|+.|++++|... .++.++.+++|+.|++++|..
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCC-cCccccCCCCCCEEECCCCcC
Confidence            7777777777776666444677777777777777665542   246667777666533 355566666666666665543


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh-----------------cCCCCC
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-----------------CKLKSL  178 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L  178 (283)
                      .. +|.   ..++|++|++++|.+. .+|. +. .+++|+.|++++|.+.. ++...                 ..+++|
T Consensus       208 ~~-l~~---~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L  279 (454)
T 1jl5_A          208 KK-LPD---LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSL  279 (454)
T ss_dssp             SS-CCC---CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             Cc-CCC---CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcC
Confidence            22 211   1124444444444433 2332 22 44444444444443221 11100                 012344


Q ss_pred             CeEeecCCCCCC--CCchhh-------------hcC-CCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017          179 SWLRLYNCSKLE--SFPGIL-------------ENM-ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN  242 (283)
Q Consensus       179 ~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~  242 (283)
                      ++|++++|.+.+  ..+..+             ..+ ++|+.+++++|.++.+|..   +++|+.|++++|.. +.+|. 
T Consensus       280 ~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l-~~lp~-  354 (454)
T 1jl5_A          280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL-AEVPE-  354 (454)
T ss_dssp             CEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC-
T ss_pred             CEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc-ccccc-
Confidence            444444443332  111100             011 2455555555555544432   35566666666533 23444 


Q ss_pred             cCCCcccceeecCCccccc---ccHHhhcc-------------CCCCceeeccC
Q 036017          243 LGSLRSLKRLHTGKSAISQ---LPSSIADL-------------KQVDGLSFYGC  280 (283)
Q Consensus       243 ~~~l~~L~~L~l~~~~i~~---~~~~~~~~-------------~~L~~L~l~~c  280 (283)
                        .+++|+.|++++|.+++   +|..+..+             ++|++|++++|
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence              34566666666666653   44444444             56666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=3.3e-25  Score=191.44  Aligned_cols=274  Identities=18%  Similarity=0.116  Sum_probs=155.6

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc-----CCC-C-CCCcceEEecCCCCccc----
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL-----PTN-L-STDKLVVLNLPCSNVEL----   71 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~-~~~~L~~l~l~~~~~~~----   71 (283)
                      +|++|++++|.++..    ....++..+..++ +|++|++++|.+...     ... . ..++|+.|++++|.+..    
T Consensus        86 ~L~~L~L~~n~i~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGA----GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CCCEEECTTSCCBGG----GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ceeEEEccCCCCCHH----HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            455555555554420    0113344555566 666666666655221     110 1 23456666666665552    


Q ss_pred             -chhhhhccCCccEEEccCCCCCCCCC-CCC-----CCCCCcEEeeeCCCCCCc----chhhccCCCCCcEEEecCCCCc
Q 036017           72 -LWEEKKEAFKLKSVDLCNSQNLTRMP-DLS-----ETPNLERMYLLNCTNLPF----ISSSIENLNNLSMLRLEGCKIL  140 (283)
Q Consensus        72 -~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  140 (283)
                       ++..+..+++|+.|++++|....... .+.     ..++|++|++++|.....    ++..+..+++|++|++++|.+.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence             23344555666666666665322111 111     245677777776654432    3455566777777777777654


Q ss_pred             CCCh----hHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCCCchhhhc-----CCCCcEEee
Q 036017          141 GPFP----AFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLESFPGILEN-----MARLEYIDL  207 (283)
Q Consensus       141 ~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l  207 (283)
                      +...    ..+...+++|+.|++++|.+...    ++..+..+++|++|++++|.+....+..+..     .++|+.|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            3211    11211466777777777765432    4445556777777777776654322222221     257777777


Q ss_pred             cCCCccc-----cchhhhcCCCccEEecccccCCCCCccc----cCC-CcccceeecCCcccc-----cccHHhhccCCC
Q 036017          208 RLTAIKE-----LPSSVEHLEGLKELRMEYCYKLSKLPDN----LGS-LRSLKRLHTGKSAIS-----QLPSSIADLKQV  272 (283)
Q Consensus       208 ~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~l~~~----~~~-l~~L~~L~l~~~~i~-----~~~~~~~~~~~L  272 (283)
                      ++|.++.     ++..+..+++|+.|++++|......+..    +.. .++|+.|++++|.++     .++..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            7777762     4555667788888888887543322222    222 568888888888887     567777788888


Q ss_pred             CceeeccCC
Q 036017          273 DGLSFYGCR  281 (283)
Q Consensus       273 ~~L~l~~c~  281 (283)
                      ++|++++|+
T Consensus       401 ~~L~l~~N~  409 (461)
T 1z7x_W          401 RELDLSNNC  409 (461)
T ss_dssp             CEEECCSSS
T ss_pred             cEEECCCCC
Confidence            888888774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=6.3e-23  Score=176.36  Aligned_cols=201  Identities=21%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      +|++|+++++.+..+|..  .++|+.+++++|.+..++..   .++|+.|++++|... .++.++.+++|++|++++|..
T Consensus        92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcC
Confidence            444444444444333322  24444444444444433221   135555555555432 244455555555555555433


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      . .+|..   ..+|++|++++|.+.+ +| .+. .+++|+.|++++|.+.+ ++..   .++|++|++++|.+. .+| .
T Consensus       166 ~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~  232 (454)
T 1jl5_A          166 K-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-E  232 (454)
T ss_dssp             S-CCCCC---CTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-C
T ss_pred             c-ccCCC---cccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-c
Confidence            2 22211   2355555555555433 33 233 55556666665554332 1211   235666666655444 344 2


Q ss_pred             hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccc
Q 036017          196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL  262 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~  262 (283)
                      +..+++|+++++++|.++.+|.   ..++|+.|++++|... .+|..   +++|+.|++++|.++++
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcc
Confidence            5556666666666666665543   2355666666665432 23332   24566666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=2.8e-25  Score=191.89  Aligned_cols=227  Identities=19%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc--CCCC-CCC----cceEEecCCCCcc----
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL--PTNL-STD----KLVVLNLPCSNVE----   70 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~~~----~L~~l~l~~~~~~----   70 (283)
                      ++|++|++++|.+.+.    ....++..+..++ +|++|+++++.+...  .... .++    +|++|++++|.+.    
T Consensus        28 ~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEA----RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             TTCSEEEEESSCCCHH----HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             CCccEEEccCCCCCHH----HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            4556666665554420    0112344455555 666666666655221  1111 222    4666666666555    


Q ss_pred             -cchhhhhccCCccEEEccCCCCCCCCC-C-----CCCCCCCcEEeeeCCCCCCc----chhhccCCCCCcEEEecCCCC
Q 036017           71 -LLWEEKKEAFKLKSVDLCNSQNLTRMP-D-----LSETPNLERMYLLNCTNLPF----ISSSIENLNNLSMLRLEGCKI  139 (283)
Q Consensus        71 -~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  139 (283)
                       .++..+..+++|+.|++++|....... .     ....++|++|++++|.....    ++..+..+++|++|++++|.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence             234445556666666666555321100 0     12234455555555543321    233344455555555555544


Q ss_pred             cCCChhHhh----cCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCCC-----chhhhcCCCCcEEe
Q 036017          140 LGPFPAFIS----LSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLESF-----PGILENMARLEYID  206 (283)
Q Consensus       140 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~l~  206 (283)
                      .+..+..+.    ...++|+.|++++|.+...    ++..+..+++|++|++++|.+....     +..+..+++|++|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            322111111    0233555555555543321    2333444555555555554432210     01111244455555


Q ss_pred             ecCCCccc-----cchhhhcCCCccEEecccc
Q 036017          207 LRLTAIKE-----LPSSVEHLEGLKELRMEYC  233 (283)
Q Consensus       207 l~~~~l~~-----~~~~~~~~~~L~~L~l~~~  233 (283)
                      +++|.++.     ++..+..+++|++|++++|
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            55554442     3444444555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4e-22  Score=160.71  Aligned_cols=197  Identities=21%  Similarity=0.249  Sum_probs=106.1

Q ss_pred             CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017           36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL  111 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~  111 (283)
                      ++++|+++++.+..++. .+ ++++|+.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            67777777777765554 22 66777777777776665543 45566677777776665433332 35666666666666


Q ss_pred             CCCCCCcchhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC----eEeecCC
Q 036017          112 NCTNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS----WLRLYNC  186 (283)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~  186 (283)
                      +|......+..+..+++|++|++++|.+.+ .+|..+. .+++|+.|++++|.+....+..+..+++++    +|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            655433333345566666666666665543 2344444 566666666666554443333333333333    4555554


Q ss_pred             CCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEeccccc
Q 036017          187 SKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCY  234 (283)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~  234 (283)
                      .+....+. .....+|+.|++++|.++.++.. +..+++|+.|++++|+
T Consensus       188 ~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          188 PMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            44322211 12223455555555555544433 2445555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.1e-23  Score=165.10  Aligned_cols=173  Identities=20%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT  114 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  114 (283)
                      +|+.|+++++.+..++....+++|+.|++++|.+..++ .+..+++|+.|++++|......+ .+..+++|++|++++|.
T Consensus        42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            55555555555544443334555555555555554432 34445555555555544322222 13444555555554444


Q ss_pred             CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017          115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG  194 (283)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  194 (283)
                      .....+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+.
T Consensus       121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCccCHHHhccCCCCCEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence            3322222334444445555544443321111222 444444444444443333333334444444444444444433333


Q ss_pred             hhhcCCCCcEEeecCC
Q 036017          195 ILENMARLEYIDLRLT  210 (283)
Q Consensus       195 ~~~~~~~L~~l~l~~~  210 (283)
                      .+..+++|+.+++++|
T Consensus       200 ~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          200 VFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             HHhCCcCCCEEEccCC
Confidence            3344444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=9.1e-23  Score=167.31  Aligned_cols=202  Identities=21%  Similarity=0.201  Sum_probs=128.3

Q ss_pred             CCcceEEecCCCCcc-cchhhh--hccCCccEEEccCCCCCCCCCCCCCC-----CCCcEEeeeCCCCCCcchhhccCCC
Q 036017           56 TDKLVVLNLPCSNVE-LLWEEK--KEAFKLKSVDLCNSQNLTRMPDLSET-----PNLERMYLLNCTNLPFISSSIENLN  127 (283)
Q Consensus        56 ~~~L~~l~l~~~~~~-~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~  127 (283)
                      +++|++|++++|.+. .++..+  ..+++|+.|++++|........++.+     ++|++|++++|......+..+..++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            566666666666665 344433  55666677776666644331122333     6677777776665444445666777


Q ss_pred             CCcEEEecCCCCcCC--ChhHh-hcCCCccCEEeccCCcCcc--cch-hhhcCCCCCCeEeecCCCCCCCCc-hhhhcCC
Q 036017          128 NLSMLRLEGCKILGP--FPAFI-SLSLTNLEVLDLAHCKRLN--RLS-ASICKLKSLSWLRLYNCSKLESFP-GILENMA  200 (283)
Q Consensus       128 ~L~~L~l~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~  200 (283)
                      +|++|++++|.+.+.  .+..+ ...+++|+.|++++|.+..  ..+ ..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            777777777665432  12222 1266777777777776542  222 223466777888887777666543 3445567


Q ss_pred             CCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccc
Q 036017          201 RLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ  261 (283)
Q Consensus       201 ~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~  261 (283)
                      +|++|++++|.++.+|..+.  ++|+.|++++|... .+|. +..+++|+.|++++|.+++
T Consensus       254 ~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888887776655  78888888887544 3455 7788888888888888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.1e-21  Score=157.82  Aligned_cols=225  Identities=16%  Similarity=0.136  Sum_probs=180.9

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      ++..+++.+..+..+.....+++|+.+++.++.+..++. +..+++|+.|++++|.. ..++.+..+++|++|++++|..
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQL   97 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSCC
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCcc
Confidence            566667777766555444478999999999999887653 77899999999999984 4466788999999999999876


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      ....+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  176 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV  176 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence            655555678999999999999988764444455 8899999999999877666666788999999999999888666666


Q ss_pred             hhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccC
Q 036017          196 LENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLK  270 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~  270 (283)
                      +..+++|+.|++++|.++.++.. +..+++|+.|++++|+..       +.+++++.++++.|.++ .+|..++.++
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            78899999999999999976654 688999999999998643       45678899998888877 6666555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=3.6e-22  Score=165.47  Aligned_cols=200  Identities=21%  Similarity=0.315  Sum_probs=84.9

Q ss_pred             CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCC-CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR-MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      +.++.++++++.+...+..+..+++|+.|++++|..... ++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            444555555554443333333445555555554442211 22 2344455555555544433334444444555555555


Q ss_pred             cCC-CCcC-CChhHhhcCCCccCEEeccCC-cCccc-chhhhcCCC-CCCeEeecCCC--CC-CCCchhhhcCCCCcEEe
Q 036017          135 EGC-KILG-PFPAFISLSLTNLEVLDLAHC-KRLNR-LSASICKLK-SLSWLRLYNCS--KL-ESFPGILENMARLEYID  206 (283)
Q Consensus       135 ~~~-~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~  206 (283)
                      ++| .+.+ .++..+. .+++|+.|++++| .+... ++..+..++ +|++|++++|.  +. ..++..+..+++|+.|+
T Consensus       150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            544 2221 1222232 4445555555554 32221 233344444 55555555442  22 12333344445555555


Q ss_pred             ecCCC-cc-ccchhhhcCCCccEEecccccCCC-CCccccCCCcccceeecCCc
Q 036017          207 LRLTA-IK-ELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       207 l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~  257 (283)
                      +++|. ++ ..+..+..+++|+.|++++|.... .....+..+++|+.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            55554 32 333344444555555555543211 11112344445555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=2.4e-21  Score=156.14  Aligned_cols=220  Identities=17%  Similarity=0.122  Sum_probs=174.9

Q ss_pred             EEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCC
Q 036017           39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNL  116 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  116 (283)
                      .++..+..+..+|... .++|+.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|++++|...
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            3444555566676654 3679999999999997765 67889999999999997554443 5888999999999998766


Q ss_pred             CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc-chhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          117 PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR-LSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      ...+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+... ++..++.+++|++|++++|.+.+..+..
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            55556788999999999999987653333454 889999999999887653 5778889999999999998887665566


Q ss_pred             hhcCCCCc----EEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          196 LENMARLE----YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       196 ~~~~~~L~----~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +..+.+|+    .+++++|.+..++.......+|+.|++++|...+..+..+..+++|+.|++++|.++
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            66666666    899999999988777666678999999998755444455688999999999999887

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4.8e-23  Score=173.98  Aligned_cols=234  Identities=18%  Similarity=0.138  Sum_probs=131.6

Q ss_pred             ccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc----chhh-------hhccCCccEEEc
Q 036017           25 HLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL----LWEE-------KKEAFKLKSVDL   87 (283)
Q Consensus        25 ~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~----~~~~-------l~~~~~L~~L~l   87 (283)
                      .++..+..++ +|++|++++|.+..     ++..+ .+++|+.|++++|.+..    +|..       +..+++|+.|++
T Consensus        23 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3445556666 77777777776643     22223 56777777777764332    2222       345677777777


Q ss_pred             cCCCCCCC----CC-CCCCCCCCcEEeeeCCCCCCc----chhhccCC---------CCCcEEEecCCCCcC-CCh---h
Q 036017           88 CNSQNLTR----MP-DLSETPNLERMYLLNCTNLPF----ISSSIENL---------NNLSMLRLEGCKILG-PFP---A  145 (283)
Q Consensus        88 ~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~  145 (283)
                      ++|.+...    ++ .+..+++|++|++++|.....    ++..+..+         ++|++|++++|.+.. .++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            77664431    22 245566777777776654322    22222333         667777777666542 222   2


Q ss_pred             HhhcCCCccCEEeccCCcCcc-----cchhhhcCCCCCCeEeecCCCCC----CCCchhhhcCCCCcEEeecCCCccc--
Q 036017          146 FISLSLTNLEVLDLAHCKRLN-----RLSASICKLKSLSWLRLYNCSKL----ESFPGILENMARLEYIDLRLTAIKE--  214 (283)
Q Consensus       146 ~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~l~~--  214 (283)
                      .+. .+++|+.|++++|.+..     ..+..+..+++|++|++++|.+.    ..++..+..+++|++|++++|.++.  
T Consensus       182 ~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          182 TFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            233 55667777777665432     12224556667777777666653    3344555666667777777766652  


Q ss_pred             ---cchhhh--cCCCccEEecccccCCC----CCcccc-CCCcccceeecCCcccc
Q 036017          215 ---LPSSVE--HLEGLKELRMEYCYKLS----KLPDNL-GSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       215 ---~~~~~~--~~~~L~~L~l~~~~~~~----~l~~~~-~~l~~L~~L~l~~~~i~  260 (283)
                         ++..+.  .+++|+.|++++|....    .++..+ ..+++|+.|++++|.++
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence               344442  26667777776665443    244444 34566777777776666

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=8.9e-21  Score=152.29  Aligned_cols=199  Identities=23%  Similarity=0.251  Sum_probs=149.0

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  113 (283)
                      ..++++++++.+..+|..+ .++++.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            6788999998888887654 3678999999998887764 57788899999998887443322 3577888999999887


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP  193 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  193 (283)
                      ......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            65544445567888888888888877654344444 78888888888887665555557778888888888877766555


Q ss_pred             hhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCC
Q 036017          194 GILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       194 ~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~  236 (283)
                      ..+..+++|++|++++|.++.++.. +..+++|+.|++++|+..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            5677788888888888888866654 567788888888887644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=7.9e-21  Score=168.45  Aligned_cols=228  Identities=20%  Similarity=0.177  Sum_probs=155.9

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|++++|.++         .+|.   .++ +|++|++++|.+..+|.  .+++|+.|++++|.+..++.   .+++
T Consensus        61 ~~L~~L~L~~N~l~---------~lp~---~l~-~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~  122 (622)
T 3g06_A           61 AHITTLVIPDNNLT---------SLPA---LPP-ELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSG  122 (622)
T ss_dssp             TTCSEEEECSCCCS---------CCCC---CCT-TCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTT
T ss_pred             CCCcEEEecCCCCC---------CCCC---cCC-CCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCC
Confidence            46777777777766         3443   345 77777777777766665  46677777777776666544   3455


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCC--cchhhc--------------cCCCCCcEEEecCCCCcCCChh
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP--FISSSI--------------ENLNNLSMLRLEGCKILGPFPA  145 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~  145 (283)
                      |+.|++.+|.. ..++.  .+++|++|++++|....  ..+..+              ..+++|+.|++++|.+.+ +|.
T Consensus       123 L~~L~L~~N~l-~~lp~--~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~  198 (622)
T 3g06_A          123 LCKLWIFGNQL-TSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT  198 (622)
T ss_dssp             CCEEECCSSCC-SCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred             cCEEECCCCCC-CcCCC--CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence            55555555542 22222  12444444444443221  111111              345899999999998754 443


Q ss_pred             HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017          146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL  225 (283)
Q Consensus       146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L  225 (283)
                          .+++|+.|++++|.+. .++.   .+++|+.|++++|.+.. +|   ..+++|+.|++++|.++.+|.   .+++|
T Consensus       199 ----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L  263 (622)
T 3g06_A          199 ----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGL  263 (622)
T ss_dssp             ----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred             ----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccC
Confidence                4578999999998754 3332   35789999999987765 44   466899999999999998887   67899


Q ss_pred             cEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhh
Q 036017          226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIA  267 (283)
Q Consensus       226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~  267 (283)
                      +.|++++|... .+|..+..+++|+.|++++|.++ ..+..+.
T Consensus       264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            99999998654 78888999999999999999998 4444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=7.1e-21  Score=154.30  Aligned_cols=202  Identities=15%  Similarity=0.086  Sum_probs=151.3

Q ss_pred             CCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017           30 LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM  108 (283)
Q Consensus        30 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  108 (283)
                      +..++ ++++++++++.+..+|..+ .++++.|++++|.+..++ ..+..+++|+.|++++|.+ ..++..+.+++|++|
T Consensus         6 ~~~l~-~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVA-SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECST-TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEE
T ss_pred             ccccC-CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEE
Confidence            45567 7888888888888777655 367888888888887653 4577788888888888773 344445778888888


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK  188 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  188 (283)
                      ++++|.. ..+|..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus        83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHc-CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            8888654 45666677888888888888877653334454 788888888888876655555567788888888888777


Q ss_pred             CCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017          189 LESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      ....+..+..+++|+.|++++|.++.+|..+...+.|+.+++.+|+..
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            654445567788888888888888888888877888888888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.7e-22  Score=167.45  Aligned_cols=242  Identities=17%  Similarity=0.175  Sum_probs=181.8

Q ss_pred             ceeEEeeccccCCCCCCCcccccCCcCCCc--ccCceEEEecCCCCCccC-CCCCCCcceEEecCCCCccc--chhhhhc
Q 036017            4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYL--PEELRYLHWHGYPLRTLP-TNLSTDKLVVLNLPCSNVEL--LWEEKKE   78 (283)
Q Consensus         4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~--~~~~l~~   78 (283)
                      ++.++++++.+.           +..+..+  + +++.|+++++.+...+ ..+.+++|+.|++++|.+..  ++..+..
T Consensus        49 ~~~l~l~~~~~~-----------~~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~  116 (336)
T 2ast_B           49 WQTLDLTGKNLH-----------PDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ  116 (336)
T ss_dssp             SSEEECTTCBCC-----------HHHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred             heeeccccccCC-----------HHHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence            556666655433           2233444  6 8999999999875544 34489999999999998873  6677888


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCC-CCcCC-ChhHhhcCCC-
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGC-KILGP-FPAFISLSLT-  152 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~-  152 (283)
                      +++|+.|++++|......+ .++.+++|++|++++|....  .++..+..+++|++|++++| .+.+. ++..+. .++ 
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~  195 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSE  195 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hccc
Confidence            9999999999997543333 46789999999999984444  36667889999999999999 66543 455555 788 


Q ss_pred             ccCEEeccCCc--Cc-ccchhhhcCCCCCCeEeecCCC-CCCCCchhhhcCCCCcEEeecCCC-cc-ccchhhhcCCCcc
Q 036017          153 NLEVLDLAHCK--RL-NRLSASICKLKSLSWLRLYNCS-KLESFPGILENMARLEYIDLRLTA-IK-ELPSSVEHLEGLK  226 (283)
Q Consensus       153 ~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-l~-~~~~~~~~~~~L~  226 (283)
                      +|+.|++++|.  +. ..++..+..+++|++|++++|. +....+..+..+++|++|++++|. +. .....+..+++|+
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            99999999984  33 4456667789999999999998 555566778899999999999995 33 2223577899999


Q ss_pred             EEecccccCCCCCccccCCC-cccceeecCCcccccc
Q 036017          227 ELRMEYCYKLSKLPDNLGSL-RSLKRLHTGKSAISQL  262 (283)
Q Consensus       227 ~L~l~~~~~~~~l~~~~~~l-~~L~~L~l~~~~i~~~  262 (283)
                      .|++++| ...   ..+..+ .+++.|++++|.++++
T Consensus       276 ~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          276 TLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             EEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred             EEeccCc-cCH---HHHHHHHhhCcceEEecccCccc
Confidence            9999998 221   122233 3477888999999844

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.4e-20  Score=151.16  Aligned_cols=201  Identities=17%  Similarity=0.184  Sum_probs=162.8

Q ss_pred             CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017           57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE  135 (283)
Q Consensus        57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  135 (283)
                      ...+.++++++.+..+|..+  .++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45788999999999888654  3689999999998554433 58899999999999976554334456889999999999


Q ss_pred             CCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc
Q 036017          136 GCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL  215 (283)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  215 (283)
                      +|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            9987653333444 889999999999887776666788999999999999887765555688899999999999999977


Q ss_pred             chh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          216 PSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       216 ~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +.. +..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            664 678999999999998655544455788999999999999876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=7e-21  Score=155.95  Aligned_cols=221  Identities=19%  Similarity=0.168  Sum_probs=171.4

Q ss_pred             CCCcceEEecCCCCccc--chh--hhhccCCccEEEccCCCCCCCCC-CC--CCCCCCcEEeeeCCCCCCcch----hhc
Q 036017           55 STDKLVVLNLPCSNVEL--LWE--EKKEAFKLKSVDLCNSQNLTRMP-DL--SETPNLERMYLLNCTNLPFIS----SSI  123 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~--~~~--~l~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~~~~~~~~----~~~  123 (283)
                      ....++.+.+.++.+..  +..  ....+++|+.|++.+|......+ .+  ..+++|++|++++|......+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            44567888888877652  211  13346789999999998766665 44  889999999999987665332    345


Q ss_pred             cCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc--chh--hhcCCCCCCeEeecCCCCCCCCch----h
Q 036017          124 ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR--LSA--SICKLKSLSWLRLYNCSKLESFPG----I  195 (283)
Q Consensus       124 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~l~~~~~L~~L~l~~~~~~~~~~~----~  195 (283)
                      ..+++|++|++++|.+.+..+..+. .+++|+.|++++|++.+.  .+.  .++.+++|++|++++|.+.. ++.    .
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence            6899999999999998665555565 899999999999986542  222  23678999999999988753 332    3


Q ss_pred             hhcCCCCcEEeecCCCcccc-chhhhcC---CCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCC
Q 036017          196 LENMARLEYIDLRLTAIKEL-PSSVEHL---EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQ  271 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~  271 (283)
                      +..+++|++|++++|.++.. |..+..+   ++|+.|++++|... .+|..+.  ++|+.|++++|.++++|. ...+++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~  295 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPE  295 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCC
Confidence            56789999999999999965 6666665   69999999998655 6777654  799999999999998866 678899


Q ss_pred             CCceeeccCC
Q 036017          272 VDGLSFYGCR  281 (283)
Q Consensus       272 L~~L~l~~c~  281 (283)
                      |++|++++|+
T Consensus       296 L~~L~L~~N~  305 (310)
T 4glp_A          296 VDNLTLDGNP  305 (310)
T ss_dssp             CSCEECSSTT
T ss_pred             ccEEECcCCC
Confidence            9999999885

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2e-20  Score=152.97  Aligned_cols=193  Identities=17%  Similarity=0.215  Sum_probs=153.5

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL  110 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  110 (283)
                      ..++ +|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. ...++.+..+++|+.|++
T Consensus        38 ~~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred             HHcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC
Confidence            3477 899999999988888755588999999999999888776 7888999999999887 445667888899999999


Q ss_pred             eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017          111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      ++|... .++ .+..+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+... +. +..+++|++|++++|.+.+
T Consensus       115 ~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          115 TSTQIT-DVT-PLAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTSCCC-CCG-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCC-Cch-hhcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence            887654 343 37888999999999988755 444 44 788999999998875543 33 7788899999999877764


Q ss_pred             CCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017          191 SFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       191 ~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      . +. +..+++|++|++++|.+..++. +..+++|+.|++++|+..
T Consensus       188 ~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 I-SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             C-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             C-hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            3 33 7788899999999999887763 788899999999987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.8e-20  Score=151.94  Aligned_cols=199  Identities=19%  Similarity=0.149  Sum_probs=158.5

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEE
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLR  133 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  133 (283)
                      ++++++.++++++.+..+|..+  .++++.|++++|.+....+ .+..+++|+.|++++|... .++.. ..+++|++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEE
Confidence            5788999999999999887655  3689999999988544433 5788999999999987643 33332 6888999999


Q ss_pred             ecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          134 LEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      +++|.+. .+|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus        84 Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            9998875 4666665 7889999999998876666667888899999999998877655566778889999999999999


Q ss_pred             ccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          214 ELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       214 ~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      .+|.. +..+++|+.|++++|.. +.+|..+...++|+.+++++|.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCcc
Confidence            87765 46788999999998654 567777778888999999988775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.9e-20  Score=153.13  Aligned_cols=212  Identities=18%  Similarity=0.207  Sum_probs=167.4

Q ss_pred             EEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCc
Q 036017           39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPF  118 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  118 (283)
                      .+.+....+..+.....+++|+.|+++++.+..++ .+..+++|+.|++++|.. ..++.+..+++|+.|++++|... .
T Consensus        23 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~-~   99 (308)
T 1h6u_A           23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLK-N   99 (308)
T ss_dssp             HHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCS-C
T ss_pred             HHHhCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCC-C
Confidence            33344444444333336889999999999998876 578899999999999974 44455889999999999998744 3


Q ss_pred             chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhc
Q 036017          119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN  198 (283)
Q Consensus       119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  198 (283)
                      .+ .+..+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+....+  ++.+++|++|++++|.+.. ++. +..
T Consensus       100 ~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~  171 (308)
T 1h6u_A          100 VS-AIAGLQSIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN  171 (308)
T ss_dssp             CG-GGTTCTTCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred             ch-hhcCCCCCCEEECCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC
Confidence            43 67889999999999998765 554 54 89999999999987654433  7789999999999987765 443 788


Q ss_pred             CCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH
Q 036017          199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS  264 (283)
Q Consensus       199 ~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~  264 (283)
                      +++|+.|++++|.++.++. +..+++|+.|++++|...+ ++ .+..+++|+.|++++|.++..|.
T Consensus       172 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeeecCCe
Confidence            9999999999999997765 7889999999999986544 44 37889999999999999886544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.9e-23  Score=173.91  Aligned_cols=234  Identities=16%  Similarity=0.162  Sum_probs=169.9

Q ss_pred             CccCCCC-CCCcceEEecCCCCccc-----chhhhhccCCccEEEccCCCCCC---CCC-C-------CCCCCCCcEEee
Q 036017           48 RTLPTNL-STDKLVVLNLPCSNVEL-----LWEEKKEAFKLKSVDLCNSQNLT---RMP-D-------LSETPNLERMYL  110 (283)
Q Consensus        48 ~~~~~~~-~~~~L~~l~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~---~~~-~-------~~~~~~L~~L~l  110 (283)
                      ..++..+ .+++|+.|++++|.+..     ++..+..+++|+.|++++|....   .++ .       +..+++|++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3343333 67889999999998773     33446678899999998874221   122 1       367899999999


Q ss_pred             eCCCCCC----cchhhccCCCCCcEEEecCCCCcCCChhHhhc---CC---------CccCEEeccCCcCc-ccch---h
Q 036017          111 LNCTNLP----FISSSIENLNNLSMLRLEGCKILGPFPAFISL---SL---------TNLEVLDLAHCKRL-NRLS---A  170 (283)
Q Consensus       111 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~-~~~~---~  170 (283)
                      ++|....    .++..+..+++|++|++++|.+....+..+..   .+         ++|+.|++++|.+. ..++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9887665    36667788899999999998875332322221   23         78999999998765 2333   3


Q ss_pred             hhcCCCCCCeEeecCCCCCCC-----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCC--
Q 036017          171 SICKLKSLSWLRLYNCSKLES-----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSK--  238 (283)
Q Consensus       171 ~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~--  238 (283)
                      .+..+++|++|++++|.+...     .+..+..+++|+.|++++|.++     .++..+..+++|+.|++++|.....  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            566788999999999877632     2226678889999999999884     5677788889999999999875532  


Q ss_pred             --Ccccc--CCCcccceeecCCccccc-----ccHHh-hccCCCCceeeccCC
Q 036017          239 --LPDNL--GSLRSLKRLHTGKSAISQ-----LPSSI-ADLKQVDGLSFYGCR  281 (283)
Q Consensus       239 --l~~~~--~~l~~L~~L~l~~~~i~~-----~~~~~-~~~~~L~~L~l~~c~  281 (283)
                        ++..+  ..+++|+.|++++|.++.     ++..+ .++++|++|++++|+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence              44555  348889999999999885     77766 668999999998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=7.8e-22  Score=175.45  Aligned_cols=276  Identities=17%  Similarity=0.125  Sum_probs=172.0

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--------------------------
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL--------------------------   54 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------   54 (283)
                      +++|++|+++++.+.+..    ...++..+..+| +|++|++++|.+..++..+                          
T Consensus       191 ~~~L~~L~L~~n~~~~~~----~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKIS----PKDLETIARNCR-SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             CCCCCEEECTTCCCSSCC----HHHHHHHHHHCT-TCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             CCCccEEEeeccCCCccC----HHHHHHHHhhCC-CCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            356777777666654211    123333444556 6666666666543332222                          


Q ss_pred             --CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCc
Q 036017           55 --STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLS  130 (283)
Q Consensus        55 --~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  130 (283)
                        .+++|+.+++++.....++..+..+++|+.|++++|.......  .+..+++|++|++.++.....++.....+++|+
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence              4455666666555444555556677888888888876322211  246788888888874322223444456788888


Q ss_pred             EEEecC----------C-CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC-CCCCCeEeecC---CCCCCC----
Q 036017          131 MLRLEG----------C-KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK-LKSLSWLRLYN---CSKLES----  191 (283)
Q Consensus       131 ~L~l~~----------~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~---~~~~~~----  191 (283)
                      +|++++          + .+.......+...+++|+.|++..+.+.......++. +++|++|++.+   |+..+.    
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            888883          3 3322112222226788899888666655544445544 88899999873   233332    


Q ss_pred             --CchhhhcCCCCcEEeecCCC--cc--ccchhhhcCCCccEEecccccCCC-CCccccCCCcccceeecCCcccc--cc
Q 036017          192 --FPGILENMARLEYIDLRLTA--IK--ELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKSAIS--QL  262 (283)
Q Consensus       192 --~~~~~~~~~~L~~l~l~~~~--l~--~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~--~~  262 (283)
                        ++..+..+++|+.|+++.|.  ++  .+......+++|+.|++++|.... .++..+..+++|+.|++++|.++  .+
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence              22346678899999997543  44  232333568889999999877543 34455677889999999999887  45


Q ss_pred             cHHhhccCCCCceeeccCC
Q 036017          263 PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       263 ~~~~~~~~~L~~L~l~~c~  281 (283)
                      +.....+++|++|++++|+
T Consensus       506 ~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHhcCccCeeECcCCc
Confidence            6666788999999999885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.2e-21  Score=150.45  Aligned_cols=208  Identities=13%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             CCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccC
Q 036017           47 LRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIEN  125 (283)
Q Consensus        47 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  125 (283)
                      ++.+|. + .++|+.|++++|.+..++. .+.++++|+.|++++|.....++                      +..+..
T Consensus        23 l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~----------------------~~~f~~   78 (239)
T 2xwt_C           23 IQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE----------------------SHSFYN   78 (239)
T ss_dssp             CSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC----------------------TTTEES
T ss_pred             ccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC----------------------HhHcCC
Confidence            444444 1 2355566666555555443 34445555555555543222222                      123344


Q ss_pred             CCCCcEEEecC-CCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC---eEeecCC-CCCCCCchhhhcCC
Q 036017          126 LNNLSMLRLEG-CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS---WLRLYNC-SKLESFPGILENMA  200 (283)
Q Consensus       126 ~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~  200 (283)
                      +++|++|++++ |.+....+..+. .+++|+.|++++|.+.. ++. +..+++|+   +|++++| .+....+..+..++
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence            44555555544 433321112222 44555555555544322 222 44445555   6666666 33333334566777


Q ss_pred             CCc-EEeecCCCccccchhhhcCCCccEEecccccCCCCC-ccccCCC-cccceeecCCcccccccHHhhccCCCCceee
Q 036017          201 RLE-YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSL-RSLKRLHTGKSAISQLPSSIADLKQVDGLSF  277 (283)
Q Consensus       201 ~L~-~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l  277 (283)
                      +|+ .+++++|.++.+|......++|+.|++++|..++.+ +..+..+ ++|+.|++++|.++.+|..  .+++|+.|++
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l  233 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA  233 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred             cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence            888 888888888877766544478889999887544444 4557778 8999999999999888764  6788999999


Q ss_pred             ccCCCC
Q 036017          278 YGCRGL  283 (283)
Q Consensus       278 ~~c~~l  283 (283)
                      .++..+
T Consensus       234 ~~~~~l  239 (239)
T 2xwt_C          234 RNTWTL  239 (239)
T ss_dssp             TTC---
T ss_pred             cCccCC
Confidence            887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.9e-21  Score=172.90  Aligned_cols=275  Identities=13%  Similarity=0.008  Sum_probs=144.5

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCcccchh
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVELLWE   74 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~~~~   74 (283)
                      |++|++|++++|.+.+..    ...++.....++ +|++|+++++.+..     ++..+ .+++|+.|+++++.+..++.
T Consensus       163 ~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~  237 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKD----GKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG  237 (592)
T ss_dssp             CTTCSEEECTTCEEECCC----SHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred             CCCCCEEECccccccCcc----hhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence            356666666666554310    000223344566 77777777766542     22222 56778888888777777776


Q ss_pred             hhhccCCccEEEccCCCCCCC----CCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcC
Q 036017           75 EKKEAFKLKSVDLCNSQNLTR----MPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS  150 (283)
Q Consensus        75 ~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  150 (283)
                      .+..+++|+.|++........    ...+..+++|+.+.++++ ....++..+..+++|++|++++|.+.......+...
T Consensus       238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            677777777777764321111    113445555555555542 223344445555566666666555322111111124


Q ss_pred             CCccCEEeccCCcCcccchhhhcC------------------------------------CCCCCeEeecCCCCCCCCch
Q 036017          151 LTNLEVLDLAHCKRLNRLSASICK------------------------------------LKSLSWLRLYNCSKLESFPG  194 (283)
Q Consensus       151 ~~~L~~L~l~~~~~~~~~~~~l~~------------------------------------~~~L~~L~l~~~~~~~~~~~  194 (283)
                      +++|+.|++..+-....++.....                                    +++|++|++..+.+.+....
T Consensus       317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            555555555421111112222233                                    44555555533333322222


Q ss_pred             hhhc-CCCCcEEeec----CCCccc------cchhhhcCCCccEEecccccC--CCCCccc-cCCCcccceeecCCcccc
Q 036017          195 ILEN-MARLEYIDLR----LTAIKE------LPSSVEHLEGLKELRMEYCYK--LSKLPDN-LGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       195 ~~~~-~~~L~~l~l~----~~~l~~------~~~~~~~~~~L~~L~l~~~~~--~~~l~~~-~~~l~~L~~L~l~~~~i~  260 (283)
                      .+.. +++|+.|+++    .+.++.      ++..+..+++|+.|+++.|..  ....+.. ...+++|+.|++++|.++
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence            2222 5556666664    334442      223345566677777655432  1111111 234778999999999887


Q ss_pred             --cccHHhhccCCCCceeeccCC
Q 036017          261 --QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       261 --~~~~~~~~~~~L~~L~l~~c~  281 (283)
                        .++..+..+++|++|++++|+
T Consensus       477 ~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          477 DEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             HHHHHHHHTCCTTCCEEEEESCC
T ss_pred             HHHHHHHHhcCcccCeeeccCCC
Confidence              456667889999999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1e-21  Score=164.38  Aligned_cols=245  Identities=15%  Similarity=0.122  Sum_probs=179.0

Q ss_pred             eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-----CC-CCC-cceEEecCCCCcccc-hhhhh
Q 036017            6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-----NL-STD-KLVVLNLPCSNVELL-WEEKK   77 (283)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~-~~~-~L~~l~l~~~~~~~~-~~~l~   77 (283)
                      ++.++.+.++|        .+|..+...+ +|++|++++|.++..+.     .+ .++ +|+.|++++|.+... +..+.
T Consensus         2 ~~~ls~n~~~~--------~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~   72 (362)
T 3goz_A            2 NYKLTLHPGSN--------PVEEFTSIPH-GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV   72 (362)
T ss_dssp             EEECCCCTTCC--------HHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ccccccccchH--------HHHHHHhCCC-CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence            35677777776        5566655555 79999999999877653     33 677 999999999999854 34444


Q ss_pred             cc-----CCccEEEccCCCCCCCCCC-----CCCC-CCCcEEeeeCCCCCCcchhh----ccC-CCCCcEEEecCCCCcC
Q 036017           78 EA-----FKLKSVDLCNSQNLTRMPD-----LSET-PNLERMYLLNCTNLPFISSS----IEN-LNNLSMLRLEGCKILG  141 (283)
Q Consensus        78 ~~-----~~L~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~  141 (283)
                      .+     ++|+.|++++|......+.     +..+ ++|++|++++|......+..    +.. ..+|++|++++|.+.+
T Consensus        73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            43     8999999999985544332     4445 89999999998765543333    344 3699999999998775


Q ss_pred             CCh----hHhhcCCC-ccCEEeccCCcCcccchh----hhcCC-CCCCeEeecCCCCCCC----Cchhhhc-CCCCcEEe
Q 036017          142 PFP----AFISLSLT-NLEVLDLAHCKRLNRLSA----SICKL-KSLSWLRLYNCSKLES----FPGILEN-MARLEYID  206 (283)
Q Consensus       142 ~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~l~  206 (283)
                      ...    ..+. .++ +|+.|++++|.+....+.    .+..+ ++|++|++++|.+...    ++..+.. .++|++|+
T Consensus       153 ~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          153 KSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             SCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred             HHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence            433    3334 454 999999999987655443    34455 5999999999887653    3444545 45899999


Q ss_pred             ecCCCcccc-----chhhhcCCCccEEecccccCC-------CCCccccCCCcccceeecCCcccc
Q 036017          207 LRLTAIKEL-----PSSVEHLEGLKELRMEYCYKL-------SKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       207 l~~~~l~~~-----~~~~~~~~~L~~L~l~~~~~~-------~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +++|.++..     ...+..+++|+.|++++|...       ..++..+..+++|+.|++++|.+.
T Consensus       232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            999999843     233467899999999998722       234456778889999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.5e-21  Score=163.43  Aligned_cols=228  Identities=16%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-C-----CCcceEEecCCCCcccch-h
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-S-----TDKLVVLNLPCSNVELLW-E   74 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~-----~~~L~~l~l~~~~~~~~~-~   74 (283)
                      +|++|++++|.+++..    ...+...+..+|.+|++|++++|.++..... + .     .++|+.|++++|.+.... .
T Consensus        23 ~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           23 GVTSLDLSLNNLYSIS----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TCCEEECTTSCGGGSC----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CceEEEccCCCCChHH----HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            3555555555554311    0011133344443455666655555332211 1 1     155556666555555221 1


Q ss_pred             ----hhhcc-CCccEEEccCCCCCCCCC-C----CCC-CCCCcEEeeeCCCCCCc----chhhccCCC-CCcEEEecCCC
Q 036017           75 ----EKKEA-FKLKSVDLCNSQNLTRMP-D----LSE-TPNLERMYLLNCTNLPF----ISSSIENLN-NLSMLRLEGCK  138 (283)
Q Consensus        75 ----~l~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~  138 (283)
                          .+..+ ++|+.|++++|....... .    +.. ..+|++|++++|.....    ++..+..++ +|++|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence                12223 555666665555322211 1    222 23555666555543321    222333333 55566665555


Q ss_pred             CcCCChhHhh---cCC-CccCEEeccCCcCccc----chhhhcC-CCCCCeEeecCCCCCCCCc----hhhhcCCCCcEE
Q 036017          139 ILGPFPAFIS---LSL-TNLEVLDLAHCKRLNR----LSASICK-LKSLSWLRLYNCSKLESFP----GILENMARLEYI  205 (283)
Q Consensus       139 ~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l  205 (283)
                      +.+..+..+.   ..+ ++|+.|++++|.+...    ++..+.. .++|++|++++|.+....+    ..+..+++|+.|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            4433332111   023 3555666655543321    2223333 3355566665555444322    222344555566


Q ss_pred             eecCCCcc--------ccchhhhcCCCccEEeccccc
Q 036017          206 DLRLTAIK--------ELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       206 ~l~~~~l~--------~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      ++++|.+.        .++..+..+++|+.|++++|.
T Consensus       259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            65555522        122233445555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4.9e-21  Score=156.86  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=169.6

Q ss_pred             CceEEEecCCCCCc-----cCCCCCCCcceEEecCCCCccc-chhhh--hccCCccEEEccCCCCCCCCC-----CCCCC
Q 036017           36 ELRYLHWHGYPLRT-----LPTNLSTDKLVVLNLPCSNVEL-LWEEK--KEAFKLKSVDLCNSQNLTRMP-----DLSET  102 (283)
Q Consensus        36 ~L~~L~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~-~~~~l--~~~~~L~~L~l~~~~~~~~~~-----~~~~~  102 (283)
                      .++.+.+.++.+..     +.....+++|++|++++|.+.. .+..+  ..+++|+.|++++|.+....+     .+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            47888888877632     1122245779999999999884 44455  778999999999998665443     23568


Q ss_pred             CCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCC--Ch--hHhhcCCCccCEEeccCCcCcccchh----hhcC
Q 036017          103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP--FP--AFISLSLTNLEVLDLAHCKRLNRLSA----SICK  174 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~  174 (283)
                      ++|++|++++|......+..+..+++|++|++++|.+.+.  ++  ..+. .+++|+.|++++|.+. .++.    .++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            9999999999887666667788999999999999986542  11  1123 7889999999998764 2222    2467


Q ss_pred             CCCCCeEeecCCCCCCCCchhhhcC---CCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccce
Q 036017          175 LKSLSWLRLYNCSKLESFPGILENM---ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKR  251 (283)
Q Consensus       175 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  251 (283)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.++.+|..+.  ++|+.|++++|...+ +|. +..+++|+.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~  298 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDN  298 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccE
Confidence            8999999999999887766666665   699999999999998887654  899999999986554 443 678899999


Q ss_pred             eecCCccccc
Q 036017          252 LHTGKSAISQ  261 (283)
Q Consensus       252 L~l~~~~i~~  261 (283)
                      |++++|.++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999998863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=7.7e-19  Score=157.18  Aligned_cols=226  Identities=18%  Similarity=0.224  Sum_probs=175.6

Q ss_pred             cccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc---chhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEe
Q 036017           33 LPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL---LWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMY  109 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  109 (283)
                      ++ .++.+.+.++..........++.|+.++++.|.+..   .+.....+.+++.+++..+........+..+++|+.++
T Consensus       348 l~-~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~  426 (635)
T 4g8a_A          348 LK-SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD  426 (635)
T ss_dssp             CT-TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred             ch-hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence            45 777788877776665555578899999999887763   34455677889999988877554455677889999999


Q ss_pred             eeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCC
Q 036017          110 LLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       110 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      +..+...... ...+..+++++.++++.|.+....+..+. .+++++.|++++|.... ..+..+..+++|++|++++|.
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence            8876544332 23467788999999999887665555555 78899999999886544 455667888999999999988


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCC-cccceeecCCcccc
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSL-RSLKRLHTGKSAIS  260 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l-~~L~~L~l~~~~i~  260 (283)
                      +.+..+..+.++++|++|++++|.++.++. .+..+++|+.|++++|...+..+..+..+ ++|+.|++++|.++
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            887777888899999999999999986654 57889999999999988777777778777 58999999988776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=4.8e-19  Score=139.58  Aligned_cols=195  Identities=18%  Similarity=0.192  Sum_probs=152.2

Q ss_pred             cccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCC-cccchh-hhhccCCccEEEccC-CCCCCCCC-CCCCCCCCc
Q 036017           33 LPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSN-VELLWE-EKKEAFKLKSVDLCN-SQNLTRMP-DLSETPNLE  106 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~-~~~~~~-~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~  106 (283)
                      +|.++++|+++++.+..++. .+ ++++|+.|++++|. ++.++. .+.++++|+.|++++ +......+ .+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            44489999999999988876 33 89999999999997 887765 577899999999998 66443332 477899999


Q ss_pred             EEeeeCCCCCCcchhhccCCCCCc---EEEecCC-CCcCCChhH-hhcCCCccC-EEeccCCcCcccchhhhcCCCCCCe
Q 036017          107 RMYLLNCTNLPFISSSIENLNNLS---MLRLEGC-KILGPFPAF-ISLSLTNLE-VLDLAHCKRLNRLSASICKLKSLSW  180 (283)
Q Consensus       107 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~  180 (283)
                      +|++++|... .+|. +..+++|+   +|++++| .+.+ ++.. +. .+++|+ .|++++|.+. .++......++|++
T Consensus       109 ~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~-~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          109 FLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQ-GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTT-TTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred             EEeCCCCCCc-cccc-cccccccccccEEECCCCcchhh-cCccccc-chhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence            9999987654 3554 77788887   9999999 6654 4443 44 889999 9999998866 44443333389999


Q ss_pred             EeecCCC-CCCCCchhhhcC-CCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017          181 LRLYNCS-KLESFPGILENM-ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       181 L~l~~~~-~~~~~~~~~~~~-~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      |++++|. +....+..+..+ ++|+.+++++|.++.+|..  .+++|+.|++.++.
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            9999985 554444667888 9999999999999988765  78899999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=5.3e-21  Score=170.13  Aligned_cols=107  Identities=14%  Similarity=0.181  Sum_probs=64.6

Q ss_pred             CCCCCCeEeec-----CCCCCCCC------chhhhcCCCCcEEeecCCCcc-ccchhhh-cCCCccEEecccccCCCCCc
Q 036017          174 KLKSLSWLRLY-----NCSKLESF------PGILENMARLEYIDLRLTAIK-ELPSSVE-HLEGLKELRMEYCYKLSKLP  240 (283)
Q Consensus       174 ~~~~L~~L~l~-----~~~~~~~~------~~~~~~~~~L~~l~l~~~~l~-~~~~~~~-~~~~L~~L~l~~~~~~~~l~  240 (283)
                      .+++|+.|++.     +|...+..      +..+..+++|+.|++++ .++ ..+..+. .+++|+.|++++|.......
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            46677777776     23333221      12245667777777765 444 2222333 37778888888776433222


Q ss_pred             ccc-CCCcccceeecCCcccc--cccHHhhccCCCCceeeccCC
Q 036017          241 DNL-GSLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       241 ~~~-~~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      ..+ ..+++|+.|++++|.++  .+......+++|++|++++|+
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            222 45788888888888886  233345568888888888886

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=2.3e-18  Score=136.72  Aligned_cols=178  Identities=15%  Similarity=0.120  Sum_probs=139.2

Q ss_pred             CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017           57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE  135 (283)
Q Consensus        57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  135 (283)
                      +..+.++++++.+..+|..+.  ++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            456788999999988886553  689999999988655544 57889999999999887666556667888999999999


Q ss_pred             CCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc
Q 036017          136 GCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL  215 (283)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  215 (283)
                      +|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+
T Consensus        92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            9887653334444 788999999999876655555567888999999998877765555678888899999999988866


Q ss_pred             ch-hhhcCCCccEEecccccCCC
Q 036017          216 PS-SVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       216 ~~-~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +. .+..+++|+.|++++|+...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeC
Confidence            65 46788889999998877654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.9e-18  Score=137.11  Aligned_cols=176  Identities=19%  Similarity=0.196  Sum_probs=146.8

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  113 (283)
                      ..++++++++.+..+|.... +.++.|++++|.+..++. .+.++++|+.|++++|.+....+ .+..+++|++|++++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            67889999999998887653 789999999999987654 57889999999999998655444 4788999999999998


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP  193 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  193 (283)
                      ......+..+..+++|++|++++|.+.+ ++......+++|+.|++++|.+....+..++.+++|++|++++|.+....+
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            7665555667899999999999998765 444432279999999999998766666578899999999999998887666


Q ss_pred             hhhhcCCCCcEEeecCCCcc
Q 036017          194 GILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       194 ~~~~~~~~L~~l~l~~~~l~  213 (283)
                      ..+..+++|+.+++++|.+.
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBC
T ss_pred             HHHhCCCCCCEEEeeCCcee
Confidence            67889999999999999887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.8e-18  Score=142.81  Aligned_cols=236  Identities=19%  Similarity=0.207  Sum_probs=170.8

Q ss_pred             eeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcc-cchh-hhhccC
Q 036017            5 RLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVE-LLWE-EKKEAF   80 (283)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~-~~~~-~l~~~~   80 (283)
                      +.++.++++++         .+|..+   |.++++|+++++.++.++.. + ++++|+.|++++|.+. .++. .+.+++
T Consensus        12 ~~v~C~~~~Lt---------~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~   79 (350)
T 4ay9_X           12 RVFLCQESKVT---------EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   79 (350)
T ss_dssp             TEEEEESTTCC---------SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred             CEEEecCCCCC---------ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence            34555555555         456544   44899999999999999864 4 8999999999999875 4543 456788


Q ss_pred             CccEEEc-cCCCCCCCC-C-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCE
Q 036017           81 KLKSVDL-CNSQNLTRM-P-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEV  156 (283)
Q Consensus        81 ~L~~L~l-~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~  156 (283)
                      +++.+.. ..+. ...+ + .+..+++|+.|++++|......+..+....++..+++.++.....++.. +......++.
T Consensus        80 ~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           80 KLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             TCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            8776544 4455 4444 3 5788999999999987654433334445567778888765433334433 2212346889


Q ss_pred             EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccC
Q 036017          157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      |++++|.+. .++.......+++++++.+++..+.++ ..+..+++|+.|++++|.++.+|..  .+.+|+.|.+.++..
T Consensus       159 L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYN  235 (350)
T ss_dssp             EECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTT
T ss_pred             hcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCC
Confidence            999998754 444444456789999998877777776 4678999999999999999988864  467888888888888


Q ss_pred             CCCCccccCCCcccceeecCCc
Q 036017          236 LSKLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       236 ~~~l~~~~~~l~~L~~L~l~~~  257 (283)
                      .+.+|. +..+++|+.++++++
T Consensus       236 l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          236 LKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCCC-TTTCCSCCEEECSCH
T ss_pred             cCcCCC-chhCcChhhCcCCCC
Confidence            888874 788899999998763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=2.7e-20  Score=165.57  Aligned_cols=62  Identities=18%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             hhcCCCccEEecccccCCCCCccccC-CCcccceeecCCcccc--cccHHhhccCCCCceeeccCC
Q 036017          219 VEHLEGLKELRMEYCYKLSKLPDNLG-SLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       219 ~~~~~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~  281 (283)
                      +..+++|+.|++++ .........+. .+++|+.|++++|.++  .+......+++|++|++++|+
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence            44555666666644 11111112222 2677888888888876  333333678889999998886

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.7e-17  Score=134.52  Aligned_cols=190  Identities=18%  Similarity=0.145  Sum_probs=143.2

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      ++..+.+....+..+.....+++|+.++++++.+..++. +..+++|+.|++++|... .++.+..+++|+.|++++|..
T Consensus        25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC
T ss_pred             HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccC-CCcccccCCCCCEEECCCCcC
Confidence            344444555555444333368889999999998887754 778899999999988744 444588899999999998764


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      . ..+ .+..+++|++|++++|.+.+ ++ .+. .+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.. . 
T Consensus       103 ~-~~~-~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-~-  173 (291)
T 1h6t_A          103 K-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-P-  173 (291)
T ss_dssp             C-CGG-GGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-G-
T ss_pred             C-CCh-hhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-h-
Confidence            3 333 47888999999999988755 43 344 788999999998876543  46778889999999988776543 3 


Q ss_pred             hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017          196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +..+++|+.|++++|.++.++. +..+++|+.|++++|+...
T Consensus       174 l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence            7788899999999998888764 7888899999999876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.6e-17  Score=134.68  Aligned_cols=174  Identities=17%  Similarity=0.167  Sum_probs=142.6

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL  110 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  110 (283)
                      ..++ +|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. ...++.+..+++|+.|++
T Consensus        43 ~~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred             hhcC-cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence            4577 999999999999888765589999999999999998776 8889999999999987 445667889999999999


Q ss_pred             eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017          111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      ++|.... + ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+....+  +..+++|++|++++|.+..
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            9876543 3 457889999999999998765 4 4454 88999999999987655443  7889999999999987764


Q ss_pred             CCchhhhcCCCCcEEeecCCCccccc
Q 036017          191 SFPGILENMARLEYIDLRLTAIKELP  216 (283)
Q Consensus       191 ~~~~~~~~~~~L~~l~l~~~~l~~~~  216 (283)
                       ++ .+..+++|+.|++++|.+...+
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccCCc
Confidence             44 4788999999999999887443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=4.9e-18  Score=141.35  Aligned_cols=235  Identities=18%  Similarity=0.240  Sum_probs=168.6

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEee-eCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYL-LNC  113 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l-~~~  113 (283)
                      ++++.++.+++.+|..+ .++++.|++++|.++.++. .+.++++|+.|++++|.+...++  .|..+++++++.. ..+
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            46777888888888765 4689999999999999885 57889999999999998766655  4788888887554 444


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCC-CCCCeEeecCCCCCCC
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKL-KSLSWLRLYNCSKLES  191 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~  191 (283)
                      ......+..+..+++|++|++++|.+.. ++........++..+++.++.....++. .+..+ ..++.|++++|.+.. 
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-  168 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-  168 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             cccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence            4433345668899999999999998765 4433221556778888876544444433 34444 468889999977764 


Q ss_pred             CchhhhcCCCCcEEeecC-CCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCC-cccccccHHhhc
Q 036017          192 FPGILENMARLEYIDLRL-TAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK-SAISQLPSSIAD  268 (283)
Q Consensus       192 ~~~~~~~~~~L~~l~l~~-~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~  268 (283)
                      ++.......+|+.+++.+ |.++.+|.. +..+++|+.|++++|. ++.+|..  .+.+|+.|.+.+ +.++.+|. +..
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~  244 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEK  244 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTT
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chh
Confidence            444344556789999975 778888865 5889999999999975 4555542  244555555444 45677774 678


Q ss_pred             cCCCCceeecc
Q 036017          269 LKQVDGLSFYG  279 (283)
Q Consensus       269 ~~~L~~L~l~~  279 (283)
                      +++|+.+++.+
T Consensus       245 l~~L~~l~l~~  255 (350)
T 4ay9_X          245 LVALMEASLTY  255 (350)
T ss_dssp             CCSCCEEECSC
T ss_pred             CcChhhCcCCC
Confidence            89999988754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=1.3e-17  Score=127.45  Aligned_cols=151  Identities=18%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             ccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017           78 EAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL  157 (283)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  157 (283)
                      .+++|+.|+++++.+. .++.+..+++|++|++++|.. ... ..+..+++|++|++++|.+.+..+..+. .+++|+.|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEE
Confidence            3445555555554422 333445555555555555421 222 2445555666666665555443334444 55666666


Q ss_pred             eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017          158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      ++++|.+....+..++.+++|++|++++|...+.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            666665554445555666666666666655333443 4566666666666666666554 55666667777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=2.2e-17  Score=126.19  Aligned_cols=153  Identities=20%  Similarity=0.260  Sum_probs=77.1

Q ss_pred             CCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC
Q 036017          100 SETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS  179 (283)
Q Consensus       100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  179 (283)
                      ..+++|+.|+++++... .++ .+..+++|++|++++|.+.. ++ .+. .+++|+.|++++|.+....+..++.+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-YN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-CG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-ch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455555555554332 333 34555555566555553321 22 333 455555665555554443444455555566


Q ss_pred             eEeecCCCCCCCCchhhhcCCCCcEEeecCCC-ccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcc
Q 036017          180 WLRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA  258 (283)
Q Consensus       180 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  258 (283)
                      +|++++|.+.+..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence            66655555554444455555555666665555 44444 3555555566665554432 232 34455555555555555


Q ss_pred             cc
Q 036017          259 IS  260 (283)
Q Consensus       259 i~  260 (283)
                      |.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=2.9e-17  Score=144.04  Aligned_cols=184  Identities=21%  Similarity=0.258  Sum_probs=107.8

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      +++.|+++++.+..+|... .++|+.|++++|.+..++   ..+++|+.|++++|.+.. ++.+..  +|+.|++++|..
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence            5667777776666665543 356777777777666665   335667777776665333 444332  666777766543


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      .. +|.   .+++|+.|++++|.+.+ +|.    .+++|+.|++++|.+.. +|. +.  ++|+.|++++|.+. .+|. 
T Consensus       133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          133 TM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence            32 443   45666777777666543 443    34566777776665443 333 33  66667777666555 3443 


Q ss_pred             hhcCCCC-------cEEeecCCCccccchhhhcCCCccEEecccccCCCCCcccc
Q 036017          196 LENMARL-------EYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL  243 (283)
Q Consensus       196 ~~~~~~L-------~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~  243 (283)
                      +..  +|       +.|++++|.++.+|..+..+++|+.|++++|...+..|..+
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            322  45       67777777777666666666777777777766555444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.3e-18  Score=149.66  Aligned_cols=173  Identities=16%  Similarity=0.156  Sum_probs=114.5

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL  110 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  110 (283)
                      ..++ +|+.|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. +..++.+..+++|+.|++
T Consensus        40 ~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred             hcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence            3456 777778877777777655577788888888777776655 6677778888877776 344556777777777777


Q ss_pred             eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017          111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      ++|.... + ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+....+  +..+++|++|++++|.+..
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            7765433 2 346677777777777776554 3 3343 66777777777766544433  5667777777777765544


Q ss_pred             CCchhhhcCCCCcEEeecCCCcccc
Q 036017          191 SFPGILENMARLEYIDLRLTAIKEL  215 (283)
Q Consensus       191 ~~~~~~~~~~~L~~l~l~~~~l~~~  215 (283)
                       + +.+..+++|+.|++++|.+...
T Consensus       190 -l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          190 -L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             -C-hHHccCCCCCEEEccCCcCcCC
Confidence             2 3456667777777777666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.3e-17  Score=143.29  Aligned_cols=190  Identities=19%  Similarity=0.167  Sum_probs=132.2

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      .+..+.+....+..+.....+++|+.|+++++.+..++ .+..+++|+.|++++|.+ ..++.+..+++|+.|++++|..
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-CCChhhccCCCCCEEECcCCCC
Confidence            44445555555544444346778888888888877765 367788888888888763 3344477788888888887654


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      . .++ .+..+++|+.|++++|.+.+ ++ .+. .+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  
T Consensus       100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A          100 K-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             C-CCT-TSTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             C-CCh-hhccCCCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence            3 333 56777888888888887654 43 344 678888888888765443  456778888888888877665433  


Q ss_pred             hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017          196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +..+++|+.|++++|.++.++ .+..+++|+.|++++|+...
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred             hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence            777888888888888887764 46778888888888876544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=7.1e-17  Score=124.41  Aligned_cols=51  Identities=16%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             EEecCCCCCccCCCCCCCcceEEecCCCCcccchhh-hhccCCccEEEccCCC
Q 036017           40 LHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEE-KKEAFKLKSVDLCNSQ   91 (283)
Q Consensus        40 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~   91 (283)
                      ++..++.+..+|... .++|+.|+++++.+..++.. +..+++|+.|++++|.
T Consensus        12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   63 (208)
T 2o6s_A           12 VECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK   63 (208)
T ss_dssp             EECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc
Confidence            333444443433222 23444444444444433321 2334444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=5.3e-17  Score=142.43  Aligned_cols=186  Identities=17%  Similarity=0.213  Sum_probs=145.4

Q ss_pred             cceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           58 KLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        58 ~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      +++.|+++++.+..+|..+  +++|+.|++++|.+. .++  ..+++|+.|++++|.+.. +|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            8999999999998887755  478999999998744 566  568999999999976544 655 443  8999999999


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS  217 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~  217 (283)
                      .+.+ +|.    .+++|+.|++++|.+.. ++.   .+++|++|++++|.+.+ +|. +.  ++|+.|++++|.++.+|.
T Consensus       131 ~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          131 QLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             cCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh
Confidence            8765 555    57899999999987654 443   57899999999988766 655 44  889999999999998887


Q ss_pred             hhhcCCCc-------cEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhcc
Q 036017          218 SVEHLEGL-------KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADL  269 (283)
Q Consensus       218 ~~~~~~~L-------~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~  269 (283)
                       +..  +|       +.|++++|. ++.+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             443  67       999999975 4568887888999999999999997 556665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=9.6e-17  Score=123.66  Aligned_cols=176  Identities=17%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC
Q 036017           60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK  138 (283)
Q Consensus        60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  138 (283)
                      +.++.+++.+..++..+  .++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            34555555555555333  3466666666665332222 24556666666666654432222334555566666666655


Q ss_pred             CcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017          139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS  218 (283)
Q Consensus       139 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~  218 (283)
                      +.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.     
T Consensus        88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            4432222222 5555666666555544333333445555555555555444333233444555555555555332     


Q ss_pred             hhcCCCccEEecccccCCCCCccccC
Q 036017          219 VEHLEGLKELRMEYCYKLSKLPDNLG  244 (283)
Q Consensus       219 ~~~~~~L~~L~l~~~~~~~~l~~~~~  244 (283)
                       +.+++|+.|++..|...+.+|+.++
T Consensus       162 -~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          162 -CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             -CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             -cCCCCHHHHHHHHHhCCceeeccCc
Confidence             2233444455544444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=4.4e-16  Score=120.97  Aligned_cols=151  Identities=19%  Similarity=0.206  Sum_probs=111.6

Q ss_pred             cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017          106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  185 (283)
                      +.++.+++. ...+|..+.  ++++.|++++|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            456666543 344554332  5788899988887653333444 788899999988887766677788888899999988


Q ss_pred             CCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          186 CSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      |.+....+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            877754445567888899999998888865 445778888999999887765555556778888888888888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1e-15  Score=119.63  Aligned_cols=151  Identities=22%  Similarity=0.196  Sum_probs=96.8

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      .+.++..++. ...+|. .-.++|+.|++++|......+..+..+++|++|++++|.+.. ++......+++|+.|++++
T Consensus        21 ~~~v~c~~~~-l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKR-HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSC-CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCC-cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCC
Confidence            4556665554 334442 123677777777776655556666777777777777777643 4433222677777777777


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCC
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~  236 (283)
                      |.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            7655544445566777777777776655 456666677777777777777776554 3566777777777776544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=5.7e-16  Score=120.29  Aligned_cols=151  Identities=15%  Similarity=0.094  Sum_probs=120.7

Q ss_pred             cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeec
Q 036017          106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLY  184 (283)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  184 (283)
                      ++++++++. ...+|..+  .+.+++|++++|.+.+..+.. +. .+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            578887754 34555433  346789999999876543433 44 78999999999988776666678889999999999


Q ss_pred             CCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          185 NCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +|.+....+..+..+++|++|++++|.++.+ +..+..+++|+.|++++|...+..|..+..+++|+.|++++|.++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9888776667788999999999999999966 556788999999999998766666788889999999999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.7e-16  Score=126.63  Aligned_cols=167  Identities=19%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      +++.+++.++.+..++....+++|+.|++++|.+..++ .+..+++|+.|++++|.. ..++.+..+++|+.|++++|..
T Consensus        20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSCC
T ss_pred             HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCcc
Confidence            44445555555544442225555555555555555544 345555555555555542 2233355555555555555443


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      . .++.. .. ++|+.|++++|.+.+ ++ .+. .+++|+.|++++|.+... + .+..+++|++|++++|.+.+.  ..
T Consensus        98 ~-~l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A           98 K-NLNGI-PS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             S-CCTTC-CC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             C-CcCcc-cc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence            2 22221 12 556666666655443 32 233 556666666666554332 2 355566666666666555443  34


Q ss_pred             hhcCCCCcEEeecCCCccc
Q 036017          196 LENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~  214 (283)
                      +..+++|+.+++++|.+..
T Consensus       168 l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             STTCCCCCEEEEEEEEEEC
T ss_pred             hccCCCCCEEeCCCCcccC
Confidence            5556666666666666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.6e-16  Score=124.16  Aligned_cols=170  Identities=19%  Similarity=0.188  Sum_probs=138.7

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      .+.++..++++++.+..++ .+..+++|+.|++.+|. ...++.+..+++|+.|++++|... .++. +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEEC
Confidence            4667778888999888776 57789999999999987 556778889999999999997654 4444 889999999999


Q ss_pred             cCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc
Q 036017          135 EGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  214 (283)
                      ++|.+.+ ++...  . ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus        93 ~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLKN-LNGIP--S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCSC-CTTCC--C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCC-cCccc--c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            9998765 54432  3 899999999987654 33 57889999999999988765 33 67889999999999999997


Q ss_pred             cchhhhcCCCccEEecccccCCC
Q 036017          215 LPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      + ..+..+++|+.|++++|....
T Consensus       165 ~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 T-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             h-HHhccCCCCCEEeCCCCcccC
Confidence            7 567889999999999987554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=1.3e-15  Score=118.33  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccch--hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW--EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT  114 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  114 (283)
                      +.++++++.++.+|... .+.++.|++++|.+..++  ..+..+++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            45666666665555433 234456666666665542  124455555555555554322222 24444444444444443


Q ss_pred             CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017          115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG  194 (283)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  194 (283)
                      .....+..+.                         .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus        93 l~~~~~~~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           93 LENVQHKMFK-------------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             CCCCCGGGGT-------------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             cCccCHhHhc-------------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            3322233334                         444555555555444433344444455555555555544444444


Q ss_pred             hhhcCCCCcEEeecCCCcc
Q 036017          195 ILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       195 ~~~~~~~L~~l~l~~~~l~  213 (283)
                      .+..+++|+.+++++|.+.
T Consensus       148 ~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEE
T ss_pred             HhcCCCCCCEEEecCcCCc
Confidence            4555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=1.9e-15  Score=117.36  Aligned_cols=114  Identities=22%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017           99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL  178 (283)
Q Consensus        99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  178 (283)
                      +..+++|+.|++++|......+..+..+++|++|++++|.+.. ++......+++|+.|++++|.+....+..+..+++|
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence            4444555555555444333334445555555555555555443 333322255566666666655544444555556666


Q ss_pred             CeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          179 SWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      ++|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666665555444444556666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.5e-15  Score=126.80  Aligned_cols=175  Identities=18%  Similarity=0.112  Sum_probs=129.4

Q ss_pred             ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhh-hh-ccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017           37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEE-KK-EAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  113 (283)
                      -+.++.+++.+..+|..+ .+.++.|++++|.+..++.. +. ++++|+.|++++|.+....+ .+..+++|+.|++++|
T Consensus        20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            357888888888887654 35688999999999877654 44 78899999999887544443 4788899999999987


Q ss_pred             CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh---cCCCCCCeEeecCCCCCC
Q 036017          114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI---CKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~  190 (283)
                      ......+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+....+..+   ..+++|+.|++++|.+..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            75544445678888999999998887664455555 78889999999887655444334   568888889988877775


Q ss_pred             CCchhhhcCCC--CcEEeecCCCcc
Q 036017          191 SFPGILENMAR--LEYIDLRLTAIK  213 (283)
Q Consensus       191 ~~~~~~~~~~~--L~~l~l~~~~l~  213 (283)
                      ..+..+..++.  ++.+++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44456667776  477888888776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.5e-15  Score=126.92  Aligned_cols=174  Identities=17%  Similarity=0.085  Sum_probs=129.4

Q ss_pred             eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCC-CCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLS-ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      +.++++++.+..+|..+  ...++.|++++|.+....+ .+. .+++|+.|++++|......+..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            57888999998888654  4568999999987544433 355 8899999999987665444556788899999999998


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhh---hcCCCCcEEeecCCCccc
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGIL---ENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~  214 (283)
                      .+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+   ..+++|+.|++++|.++.
T Consensus        99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            87653333444 78899999999988776667778888999999999877765333333   568888999999998887


Q ss_pred             cch-hhhcCCC--ccEEecccccCC
Q 036017          215 LPS-SVEHLEG--LKELRMEYCYKL  236 (283)
Q Consensus       215 ~~~-~~~~~~~--L~~L~l~~~~~~  236 (283)
                      ++. .+..++.  ++.|++.+|+..
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            764 3566665  477888887654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=8.4e-16  Score=114.25  Aligned_cols=136  Identities=21%  Similarity=0.276  Sum_probs=77.0

Q ss_pred             CCCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcE
Q 036017          126 LNNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEY  204 (283)
Q Consensus       126 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  204 (283)
                      .+++++|++++|.+. +.+|..+. .+++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            345666666665554 23444433 556666666666554332  34555666666666666655545555555666666


Q ss_pred             EeecCCCccccc--hhhhcCCCccEEecccccCCCCCc---cccCCCcccceeecCCcccccccH
Q 036017          205 IDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLP---DNLGSLRSLKRLHTGKSAISQLPS  264 (283)
Q Consensus       205 l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~i~~~~~  264 (283)
                      |++++|.++.++  ..+..+++|+.|++++|...+..+   ..+..+++|+.|++++|.++++|.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            666666666544  445666666666666654433222   245566666666666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=7.1e-19  Score=154.79  Aligned_cols=208  Identities=17%  Similarity=0.172  Sum_probs=150.7

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEE-
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLR-  133 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-  133 (283)
                      .+++|+.|++++|.+..+|..++.+.+|+.|++.++......+         .+ +..+......|..+..+++|+.|+ 
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~l-l~~~~~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------LL-MRALDPLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------HH-HHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------HH-HHhcccccCCHHHHHHHHhcccCcc
Confidence            5788889999999999999999999999999986543111000         00 011112334555666666777666 


Q ss_pred             ecCCCCcCCChh------Hhh-cCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017          134 LEGCKILGPFPA------FIS-LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID  206 (283)
Q Consensus       134 l~~~~~~~~~~~------~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  206 (283)
                      ++.+.+. .++.      .+. .....|+.|++++|.+.. +|. ++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus       417 l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  492 (567)
T 1dce_A          417 MRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ  492 (567)
T ss_dssp             GGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             hhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE
Confidence            3333211 1111      000 012468999999987654 554 888999999999998877 6788899999999999


Q ss_pred             ecCCCccccchhhhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCcccccccH----HhhccCCCCceee
Q 036017          207 LRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSF  277 (283)
Q Consensus       207 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l  277 (283)
                      +++|.++.+| .++.+++|+.|++++|...+.. |..+..+++|+.|++++|.++.+|.    ....+|+|+.|++
T Consensus       493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999988 7899999999999998765554 8889999999999999999986543    3456899998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=2.1e-15  Score=112.06  Aligned_cols=129  Identities=21%  Similarity=0.267  Sum_probs=111.8

Q ss_pred             CCCccCEEeccCCcCc-ccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccE
Q 036017          150 SLTNLEVLDLAHCKRL-NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKE  227 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~  227 (283)
                      .+++|+.|++++|.+. +.++..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.. +|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            5688999999999865 46677778899999999999887654  677889999999999999996 7777788999999


Q ss_pred             EecccccCCCCCc--cccCCCcccceeecCCcccccccH----HhhccCCCCceeeccCC
Q 036017          228 LRMEYCYKLSKLP--DNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSFYGCR  281 (283)
Q Consensus       228 L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~c~  281 (283)
                      |++++|.. +.++  ..+..+++|+.|++++|.++.++.    .+..+++|++|++++|+
T Consensus       100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            99999864 4444  678899999999999999997776    78899999999999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=1.1e-14  Score=113.85  Aligned_cols=150  Identities=18%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLN  112 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~  112 (283)
                      .-+.++.++..+..+|... .++|+.|++++|.+..+ +..+..+++|+.|++++|.+ ..++  .+..+++|+.|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            4566777777777666544 36777777777777755 34456667777777776663 3333  245666666666666


Q ss_pred             CCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017          113 CTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL  189 (283)
Q Consensus       113 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  189 (283)
                      |......+..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            5443333333455666666666665544 3444443 5555666666555544333333444555555555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.5e-15  Score=110.59  Aligned_cols=128  Identities=18%  Similarity=0.188  Sum_probs=88.0

Q ss_pred             CCCccCEEeccCCcCc-ccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccE
Q 036017          150 SLTNLEVLDLAHCKRL-NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKE  227 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~  227 (283)
                      .+++++.|++++|.+. +.++..+..+++|++|++++|.+...  ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3456677777776654 34555556667777777777665543  456667777777777777775 6666667778888


Q ss_pred             EecccccCCCC-CccccCCCcccceeecCCcccccccH----HhhccCCCCceeecc
Q 036017          228 LRMEYCYKLSK-LPDNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSFYG  279 (283)
Q Consensus       228 L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~  279 (283)
                      |++++|...+. .+..+..+++|+.|++++|.++.++.    .+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88887654331 22567778888888888888886654    677888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.8e-15  Score=120.64  Aligned_cols=216  Identities=11%  Similarity=0.013  Sum_probs=127.9

Q ss_pred             CCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCC----CCcchhhccCCCCC
Q 036017           56 TDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTN----LPFISSSIENLNNL  129 (283)
Q Consensus        56 ~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~L  129 (283)
                      +++|+.+++.+ .+..++. .+.+|++|+.+++.++......+ .|..+.++..+.......    .......+..+.+|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56666666655 5554433 34556666666666554322211 344555554444332100    00011123344455


Q ss_pred             c-EEEecCCCCcCCChhHhhc---CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEE
Q 036017          130 S-MLRLEGCKILGPFPAFISL---SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYI  205 (283)
Q Consensus       130 ~-~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  205 (283)
                      + .+.+...   +.++..+..   ...++..+.+.+.-...........+++|+.+++..|.+..--...|.++.+|+.+
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            4 3333321   122222211   24456666665532111222112248899999999877665445678899999999


Q ss_pred             eecCCCccccchh-hhcCCCcc-EEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceee
Q 036017          206 DLRLTAIKELPSS-VEHLEGLK-ELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSF  277 (283)
Q Consensus       206 ~l~~~~l~~~~~~-~~~~~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l  277 (283)
                      ++.++ +..++.. +..+++|+ .+++.+ .....-+..|..|++|+.++++.+.++.++. .+.+|++|+.++.
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99987 7766655 68899999 999987 3333334678899999999999999997774 7789999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.9e-15  Score=107.83  Aligned_cols=126  Identities=21%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             CCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEE
Q 036017          127 NNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYI  205 (283)
Q Consensus       127 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  205 (283)
                      ++++.|++++|.+. +.+|..+. .+++|+.|++++|.+...  ..++.+++|++|++++|.+.+.++..+..+++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34555555555543 23444333 455555555555543332  344555556666665555554455555556666666


Q ss_pred             eecCCCccccc--hhhhcCCCccEEecccccCCCCCc---cccCCCcccceeecC
Q 036017          206 DLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLP---DNLGSLRSLKRLHTG  255 (283)
Q Consensus       206 ~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~  255 (283)
                      ++++|.++.++  ..+..+++|++|++++|...+..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666665443  445566666666666654332222   234555666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=1.1e-16  Score=140.80  Aligned_cols=176  Identities=18%  Similarity=0.142  Sum_probs=137.9

Q ss_pred             CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC-------------CcCCChhHhhcCCCccCEEe-ccCCcC
Q 036017           99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK-------------ILGPFPAFISLSLTNLEVLD-LAHCKR  164 (283)
Q Consensus        99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~  164 (283)
                      +..+++|+.|+++++. +..+|..+..+++|++|+++.+.             ..+..|..+. .+++|+.|+ +..+.+
T Consensus       345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHH
T ss_pred             cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhccc
Confidence            3567888899998865 45788888899999998886553             2333444555 677888887 444322


Q ss_pred             cccchh------hhcC--CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017          165 LNRLSA------SICK--LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       165 ~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      . .++.      .+..  ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|...
T Consensus       423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence            1 1111      1111  2369999999987775 665 89999999999999999999999999999999999997655


Q ss_pred             CCCccccCCCcccceeecCCcccccc--cHHhhccCCCCceeeccCC
Q 036017          237 SKLPDNLGSLRSLKRLHTGKSAISQL--PSSIADLKQVDGLSFYGCR  281 (283)
Q Consensus       237 ~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~c~  281 (283)
                      + +| .+..+++|+.|++++|.++.+  |..+..+++|++|++++|+
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            4 77 789999999999999999977  8999999999999999884

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.9e-14  Score=106.01  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             ccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCC
Q 036017          123 IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARL  202 (283)
Q Consensus       123 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  202 (283)
                      +..+++|++|++++|.+.. ++.... ..++|+.|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~-~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGG-GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhh-cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4567788889998887654 444332 445888899888876543  456778888888888877664333445778888


Q ss_pred             cEEeecCCCccccch--hhhcCCCccEEecccccCCCCCccc----cCCCcccceeecCCccccc
Q 036017          203 EYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKLSKLPDN----LGSLRSLKRLHTGKSAISQ  261 (283)
Q Consensus       203 ~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~~----~~~l~~L~~L~l~~~~i~~  261 (283)
                      ++|++++|.++.++.  .+..+++|+.|++++|+.. .++..    +..+++|+.|+++.|.+.+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            888888888887776  5677888888888887654 34443    6677788888888777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.9e-14  Score=104.67  Aligned_cols=131  Identities=13%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017           99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL  178 (283)
Q Consensus        99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  178 (283)
                      +..+++|+.|++++|... .++......++|++|++++|.+.+ + ..+. .+++|+.|++++|.+....+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445667777777776543 333322333477777777776654 2 3333 66777777777776544333334667777


Q ss_pred             CeEeecCCCCCCCCch--hhhcCCCCcEEeecCCCccccchh----hhcCCCccEEeccccc
Q 036017          179 SWLRLYNCSKLESFPG--ILENMARLEYIDLRLTAIKELPSS----VEHLEGLKELRMEYCY  234 (283)
Q Consensus       179 ~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~  234 (283)
                      ++|++++|.+. .++.  .+..+++|+.+++++|.+..+|..    +..+++|+.|++++|.
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            77777776653 3443  566777777777777777766653    6677777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.2e-14  Score=131.60  Aligned_cols=191  Identities=17%  Similarity=0.179  Sum_probs=98.1

Q ss_pred             CCcceEEecCCCCcccchhhhhccCCccEEEccCCCC----CCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCc
Q 036017           56 TDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQN----LTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLS  130 (283)
Q Consensus        56 ~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  130 (283)
                      .+.++.+.+.++.+...+..+....+|..+.+.....    ....+ .+..+++|+.|++++|... .++..+..+++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence            4567777887777776554443344444444432211    11112 4677788888888886643 6666666888888


Q ss_pred             EEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCC
Q 036017          131 MLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLT  210 (283)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  210 (283)
                      +|++++|.+. .+|..+. .+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus       251 ~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          251 RLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             EEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            8888888776 5777676 7888888888887755 56777788888888888887664 56766888888888888888


Q ss_pred             Ccc-ccchhhhcCCC-ccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017          211 AIK-ELPSSVEHLEG-LKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       211 ~l~-~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  257 (283)
                      .++ .+|..+..... +..+++.+|.....+|.      .|+.|+++.|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            887 44444433221 22356777666555543      4556666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.6e-14  Score=130.90  Aligned_cols=189  Identities=19%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             cccCceEEEecCCCCCccCCCC-CCCcceEEe-----cCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCC
Q 036017           33 LPEELRYLHWHGYPLRTLPTNL-STDKLVVLN-----LPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNL  105 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~-----l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L  105 (283)
                      -+ .++.|++.++.+...+... ...+|..+.     +..+.+...+..+..+.+|+.|++++|.+. .++ .+..+++|
T Consensus       172 ~~-~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          172 TP-LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CC-ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            35 7889999888875554333 233333333     333444444556778899999999999855 555 56789999


Q ss_pred             cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017          106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  185 (283)
                      +.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.+ ..+|..++.+++|++|++++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTT
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCC
Confidence            99999998655 78888999999999999999987 5788877 899999999999875 46677799999999999999


Q ss_pred             CCCCCCCchhhhcCCC-CcEEeecCCCcc-ccchhhhcCCCccEEecccc
Q 036017          186 CSKLESFPGILENMAR-LEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYC  233 (283)
Q Consensus       186 ~~~~~~~~~~~~~~~~-L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~  233 (283)
                      |.+.+..+..+..... ...+++.+|.++ .+|.      .|+.|++..|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            9988877766554321 234677788776 4443      4556666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=2.9e-13  Score=102.72  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=12.9

Q ss_pred             EEEecCCCCCccCCCCCCCcceEEecCCCCccc
Q 036017           39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL   71 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~   71 (283)
                      +++++++.++.+|... ..+++.|++++|.+..
T Consensus        12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~   43 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGR   43 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCS
T ss_pred             EEEcCCCCcCcCccCC-CCCCCEEECCCCcCCc
Confidence            4444444444444322 1144444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=6.4e-13  Score=100.81  Aligned_cols=128  Identities=16%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCC--CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      +.++++++.++.+|..+  ..+++.|++++|.+....+.  +..+++|++|++++|......+..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            45556666555555433  22566666666553332221  455666666666655544444555555666666666666


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      .+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus        89 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           89 KIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55443333333 55666666666655555545555556666666666655544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.8e-12  Score=98.34  Aligned_cols=125  Identities=20%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNL  116 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  116 (283)
                      ++++++++.+..+|... .++|+.|++++|.+..++..+..+++|+.|++++|.+....+ .+..+++|++|++++|...
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            56777888887777654 367888888888888887777888888888888887544333 4777888888888877655


Q ss_pred             CcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCc
Q 036017          117 PFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRL  165 (283)
Q Consensus       117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  165 (283)
                      ...+..+..+++|++|++++|.+.. ++.. +. .+++|+.|++++|.+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~-~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFN-DLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTT-TCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCe-eChhhhh-cCccccEEEeCCCCee
Confidence            4445566777778888887777654 4433 33 6777777777776553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=4.8e-12  Score=94.65  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             CCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017          127 NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID  206 (283)
Q Consensus       127 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  206 (283)
                      +++++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4555555555554332222222 455555555555544333333344555555555555544433333344555555555


Q ss_pred             ecCCCccccchh-hhcCCCccEEecccccC
Q 036017          207 LRLTAIKELPSS-VEHLEGLKELRMEYCYK  235 (283)
Q Consensus       207 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~  235 (283)
                      +++|.++.++.. +..+++|+.|++++|+.
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            555555544443 24455555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=5.6e-15  Score=112.83  Aligned_cols=125  Identities=20%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017          146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL  225 (283)
Q Consensus       146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L  225 (283)
                      .+. .+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .++..+..+++|+.|++++|.++.++ .+..+++|
T Consensus        43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred             HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence            444 55556666665554332 33 4455555666666555444 34444445556666666666666554 45556666


Q ss_pred             cEEecccccCCCCCc--cccCCCcccceeecCCccccccc-----------HHhhccCCCCcee
Q 036017          226 KELRMEYCYKLSKLP--DNLGSLRSLKRLHTGKSAISQLP-----------SSIADLKQVDGLS  276 (283)
Q Consensus       226 ~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~-----------~~~~~~~~L~~L~  276 (283)
                      +.|++++|.... ++  ..+..+++|+.|++++|.++...           ..+..+++|++|+
T Consensus       118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          118 RVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            666666654322 22  24556666666666666664321           1245666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=4.4e-12  Score=96.20  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             CCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017          103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR  182 (283)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  182 (283)
                      ++|++|++++|.. ..+|..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|+
T Consensus        31 ~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            3455555555432 24444556666666666666665543333343 666666666666665555555566666777777


Q ss_pred             ecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          183 LYNCSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      +++|.+....+..+..+++|+.+++++|.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7766655433345666777777777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=9.5e-12  Score=93.01  Aligned_cols=13  Identities=15%  Similarity=0.273  Sum_probs=5.4

Q ss_pred             cceEEecCCCCcc
Q 036017           58 KLVVLNLPCSNVE   70 (283)
Q Consensus        58 ~L~~l~l~~~~~~   70 (283)
                      +|+.|++++|.+.
T Consensus        29 ~l~~L~l~~n~l~   41 (177)
T 2o6r_A           29 SATRLELESNKLQ   41 (177)
T ss_dssp             TCSEEECCSSCCC
T ss_pred             CCcEEEeCCCccc
Confidence            3444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=1e-10  Score=98.58  Aligned_cols=231  Identities=12%  Similarity=0.120  Sum_probs=130.5

Q ss_pred             CceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeee
Q 036017           36 ELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLL  111 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~  111 (283)
                      +|+.+.+... +..++... .-.+|+.+.+.+ .+..+. ..+.+|.+|+.+++..+. ...++  .|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeC
Confidence            5777776554 55554433 123577777765 444443 245667777777777655 33333  233 5677777776


Q ss_pred             CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC--
Q 036017          112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL--  189 (283)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--  189 (283)
                      .+ ...--...+..+++|+.+.+..+ + ..++.... .-.+|+.+.+.. .+.......+.+|++|+.+.+.++...  
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF-~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAF-RESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTT-TTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-c-cCcccccc-ccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            43 22222334667777777777654 2 22333333 225677777743 333333445667777777777664433  


Q ss_pred             ---CCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccccc-H
Q 036017          190 ---ESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-S  264 (283)
Q Consensus       190 ---~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~  264 (283)
                         ..-...|.+|++|+.+++.. .+..+... +..|++|+.+.+..+ ....-...|..+ +|+.+++.++.+..++ .
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               11234566777777777773 45555443 466777777777653 222223456667 7777777777666443 3


Q ss_pred             HhhccC-CCCceeec
Q 036017          265 SIADLK-QVDGLSFY  278 (283)
Q Consensus       265 ~~~~~~-~L~~L~l~  278 (283)
                      .+..++ .++.|++.
T Consensus       364 ~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          364 VWYGFPDDITVIRVP  378 (401)
T ss_dssp             SCCCSCTTCCEEEEC
T ss_pred             cccCCCCCccEEEeC
Confidence            344443 55666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=4.3e-13  Score=112.11  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=98.4

Q ss_pred             cCCccEEEccCCCCCCCCC-C----C-CCCCCCcEEeeeCCCCCCcchh-hccCCCCCcEEEecCCCCcCCChhHhh---
Q 036017           79 AFKLKSVDLCNSQNLTRMP-D----L-SETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGCKILGPFPAFIS---  148 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~----~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~---  148 (283)
                      .+.|+.|++++|.+..... .    + ...++|++|++++|........ ....+++|+.|++++|.+.+.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            5678888888877432211 1    1 2346888888888765433222 223456788888888876543222221   


Q ss_pred             -cCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----c
Q 036017          149 -LSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----E  214 (283)
Q Consensus       149 -~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~  214 (283)
                       ...++|+.|++++|.+..    .++..+...++|++|++++|.+...    +...+...++|+.|++++|.++     .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             135678888888877543    2334456677888888888776532    2344556677888888888776     2


Q ss_pred             cchhhhcCCCccEEecccccCC
Q 036017          215 LPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      +...+...++|++|++++|...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            3444556677888888877644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=2.2e-11  Score=100.26  Aligned_cols=245  Identities=13%  Similarity=0.070  Sum_probs=160.2

Q ss_pred             CCCceeEEeeccccCCC--CCCCccc---------ccC-CcCCC--------cccCceEEEecCCCCCccCCCC--CCCc
Q 036017            1 MTNLRLLKFYLHNLRGD--PIMSSKV---------HLD-QGLDY--------LPEELRYLHWHGYPLRTLPTNL--STDK   58 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~--~~~~~~~---------~~~-~~~~~--------~~~~L~~L~l~~~~~~~~~~~~--~~~~   58 (283)
                      +++|++|++++|.+...  ..+....         .+| ..+..        ++ +|+.|.+.+ .+..++...  +|++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC-CCcEEECCc-cccchhHHHhhcCcc
Confidence            46899999999988721  1001111         223 34556        88 999999999 888887644  8999


Q ss_pred             ceEEecCCCCcccchh-hhhccCCccEEEccCCC---CCCCCC--CCCCCCCCc-EEeeeCCCCCCcchhhc----cCCC
Q 036017           59 LVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQ---NLTRMP--DLSETPNLE-RMYLLNCTNLPFISSSI----ENLN  127 (283)
Q Consensus        59 L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~---~~~~~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~----~~~~  127 (283)
                      |+.++++++.+..++. .+..+.++..+......   ....+.  .+.++..|+ .+.+....   .++..+    ....
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPR  202 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGG
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcc
Confidence            9999999998876654 45566667666655421   112222  355677777 45554422   222221    2344


Q ss_pred             CCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCc-EEe
Q 036017          128 NLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLE-YID  206 (283)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~  206 (283)
                      ++..+.+.+.-... ....+...+++|+.+++.+|.+.......+.+|.+|+++++..+ +..--...|.++.+|+ .++
T Consensus       203 ~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          203 DINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence            66777776642211 12223224788999999987766555666888999999999885 4333346788889998 999


Q ss_pred             ecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccceee
Q 036017          207 LRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH  253 (283)
Q Consensus       207 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  253 (283)
                      +.+ .++.++. .+..|++|+.+++.++.....-...|..+++|+.++
T Consensus       281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            988 6666654 468899999999977554444445788888888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=8.6e-14  Score=106.20  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=95.2

Q ss_pred             chhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCc
Q 036017          168 LSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLR  247 (283)
Q Consensus       168 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~  247 (283)
                      ++..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++.+|..+..+++|+.|++++|... .++ .+..++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccCC
Confidence            34478889999999999987766 66 788999999999999999999988888899999999998654 455 577889


Q ss_pred             ccceeecCCcccccccH--HhhccCCCCceeeccCC
Q 036017          248 SLKRLHTGKSAISQLPS--SIADLKQVDGLSFYGCR  281 (283)
Q Consensus       248 ~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~c~  281 (283)
                      +|+.|++++|.++.++.  .+..+++|++|++++|+
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            99999999999997764  68899999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=5e-10  Score=94.46  Aligned_cols=214  Identities=10%  Similarity=0.092  Sum_probs=127.7

Q ss_pred             CceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeee
Q 036017           36 ELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLL  111 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~  111 (283)
                      +|+.+.+.. .+..++...  +|++|+.+++.++.+..++.....+.+|+.+.+..+  ...++  +|..|++|+.+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence            577777765 555554332  778888888877777776655444677888887644  33333  57777788888876


Q ss_pred             CCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCc-----ccchhhhcCCCCCCeEeecC
Q 036017          112 NCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRL-----NRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       112 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~  185 (283)
                      .+  +..++ ..+.. .+|+.+.+..+ +. .++......+++|+.+++.++...     ......+.+|++|+.+.+..
T Consensus       235 ~~--l~~I~~~aF~~-~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          235 EN--VSTIGQEAFRE-SGITTVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             TT--CCEECTTTTTT-CCCSEEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             CC--ccCcccccccc-CCccEEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            53  22222 22333 57777777543 22 233333337777888877765432     23344566777888887764


Q ss_pred             CCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCc-ccceeecCCcccc
Q 036017          186 CSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLR-SLKRLHTGKSAIS  260 (283)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~i~  260 (283)
                       ....--...|.+|.+|+.+.+..+ ++.+... +..+ +|+.+++.++.........+..++ .++.+.+..+.+.
T Consensus       310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence             333223356667777888887544 5544433 4566 788888877654433334455553 5667776665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=1.5e-12  Score=108.76  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=112.1

Q ss_pred             CCCCcEEeeeCCCCCCcch----hhcc-CCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhh----h
Q 036017          102 TPNLERMYLLNCTNLPFIS----SSIE-NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSAS----I  172 (283)
Q Consensus       102 ~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l  172 (283)
                      .++|+.|++++|.......    ..+. ..++|++|++++|.+.......+...+++|+.|++++|.+.......    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678899999887654322    2233 33689999999998754333333324568999999998765433332    2


Q ss_pred             -cCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCC----C
Q 036017          173 -CKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLS----K  238 (283)
Q Consensus       173 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~----~  238 (283)
                       ...++|++|++++|.+...    ++..+...++|++|++++|.++     .+...+...++|+.|++++|....    .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3467899999999887542    3344567888999999999987     235556778899999999986553    2


Q ss_pred             CccccCCCcccceeecCCcccc
Q 036017          239 LPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       239 l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +...+...++|+.|++++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            3344556688999999999998

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=1.8e-10  Score=85.69  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=77.2

Q ss_pred             cEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecC
Q 036017          130 SMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL  209 (283)
Q Consensus       130 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  209 (283)
                      +.++++++.+ +.+|..+   +++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            5778887765 3466543   37788888888887666677778888888888888777664445567788888888888


Q ss_pred             CCccccchh-hhcCCCccEEecccccCC
Q 036017          210 TAIKELPSS-VEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       210 ~~l~~~~~~-~~~~~~L~~L~l~~~~~~  236 (283)
                      |.++.++.. +..+++|+.|++++|+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            888877765 677888888888887644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=2.2e-10  Score=84.88  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             CcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeec
Q 036017          129 LSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLR  208 (283)
Q Consensus       129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  208 (283)
                      .+.++++++.+.. +|..+   +++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            5678888877644 66543   3778888888887766667778888888888888887775555566788888888888


Q ss_pred             CCCccccchh-hhcCCCccEEecccccCC
Q 036017          209 LTAIKELPSS-VEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       209 ~~~l~~~~~~-~~~~~~L~~L~l~~~~~~  236 (283)
                      +|.++.++.. +..+++|+.|++++|+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8888877664 678888888888887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=2.1e-10  Score=85.37  Aligned_cols=107  Identities=15%  Similarity=0.191  Sum_probs=87.4

Q ss_pred             cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEeccc
Q 036017          154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEY  232 (283)
Q Consensus       154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~  232 (283)
                      -+.++++++.+ ..+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            36788888664 4555544  37899999999988877778889999999999999999988876 47899999999999


Q ss_pred             ccCCCCCccccCCCcccceeecCCccccccc
Q 036017          233 CYKLSKLPDNLGSLRSLKRLHTGKSAISQLP  263 (283)
Q Consensus       233 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~  263 (283)
                      |...+..+..+..+++|+.|++++|.+...+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            7655433345889999999999999988443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=7.5e-10  Score=82.05  Aligned_cols=102  Identities=19%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017           37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT  114 (283)
Q Consensus        37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  114 (283)
                      .+.++++++.+..+|... .++|+.|++++|.+..+ +..+.++++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            345566666655555433 25556666666666554 3344555566666665555332222 23455555555555544


Q ss_pred             CCCcchhhccCCCCCcEEEecCCCC
Q 036017          115 NLPFISSSIENLNNLSMLRLEGCKI  139 (283)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~  139 (283)
                      .....+..+..+++|++|++++|++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            3322222345555555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.02  E-value=6.4e-10  Score=92.27  Aligned_cols=178  Identities=15%  Similarity=0.166  Sum_probs=104.0

Q ss_pred             cCCccEEEccCCCCC-CCC--------CCCCCCCCCcEEeeeCCCC---------CCcchhhccCCCCCcEEEecCCCCc
Q 036017           79 AFKLKSVDLCNSQNL-TRM--------PDLSETPNLERMYLLNCTN---------LPFISSSIENLNNLSMLRLEGCKIL  140 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~-~~~--------~~~~~~~~L~~L~l~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~  140 (283)
                      ...++.|.+...... ...        .+...+++|+.|.+.....         ...+...+..+|+|+.|++.++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            346778887755422 111        1234567888888865321         1124455677888888888776312


Q ss_pred             CCChhHhhcCCCccCEEeccCCcCcccchhhhc--CCCCCCeEeecCC--CCCC-----CCchhh--hcCCCCcEEeecC
Q 036017          141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC--KLKSLSWLRLYNC--SKLE-----SFPGIL--ENMARLEYIDLRL  209 (283)
Q Consensus       141 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~  209 (283)
                      . ++. +  ..++|+.|++..+.+.......+.  .+|+|++|++..+  ...+     .+...+  ..+++|++|++.+
T Consensus       186 ~-l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          186 S-IGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             B-CCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred             e-ecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence            2 332 2  367888888887765444333333  6788888887531  1111     111122  2467888888888


Q ss_pred             CCcc-ccchhh---hcCCCccEEecccccCCCC----CccccCCCcccceeecCCcccc
Q 036017          210 TAIK-ELPSSV---EHLEGLKELRMEYCYKLSK----LPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       210 ~~l~-~~~~~~---~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      |.++ ..+..+   ..++.|+.|+++.|.....    ++..+..+++|+.|++++|.|+
T Consensus       262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            8776 222222   3567888888877643321    2333345678888888888777

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=3.3e-09  Score=87.97  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=25.4

Q ss_pred             CCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc-chhhhh--ccCCccEEEc
Q 036017           30 LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL-LWEEKK--EAFKLKSVDL   87 (283)
Q Consensus        30 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~--~~~~L~~L~l   87 (283)
                      +..+| +|+.|.++++....++. ...++|+.|++..+.+.. ....+.  .+++|+.|++
T Consensus       168 l~~~P-~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          168 LDAMP-LLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             HHTCT-TCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred             HhcCC-CCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence            34455 66666665542222222 234555555555554431 111122  3555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=3.5e-09  Score=87.67  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             EEeccCCcCcccchhhhcCCCCCCeEeecC-CCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccc
Q 036017          156 VLDLAHCKRLNRLSASICKLKSLSWLRLYN-CSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYC  233 (283)
Q Consensus       156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~  233 (283)
                      .++.+++.....+|. +..+.+|++|++++ |.+....+..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            457776523556777 88899999999996 77766566788899999999999999996655 5789999999999997


Q ss_pred             cCCCCCccccCCCcccceeecCCcccc
Q 036017          234 YKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       234 ~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ...+..+..+..++ |+.|++.+|.++
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            65543334444444 999999999887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.88  E-value=7.3e-08  Score=81.17  Aligned_cols=257  Identities=12%  Similarity=0.081  Sum_probs=123.5

Q ss_pred             CCCceeEEeeccccCCCCCCCccccc-CCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCC---------
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHL-DQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSN---------   68 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~---------   68 (283)
                      |.+|+.+.+..+ ++         .+ ..++..|. +|+.+++... +..++...  ++..|+.+.+..+-         
T Consensus        70 c~~L~~i~lp~~-i~---------~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~  137 (394)
T 4fs7_A           70 CRKVTEIKIPST-VR---------EIGEFAFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFK  137 (394)
T ss_dssp             CTTEEEEECCTT-CC---------EECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTT
T ss_pred             CCCceEEEeCCC-cc---------CcchhHhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeee
Confidence            456777777522 22         22 34577788 8888888643 44443322  56666655543221         


Q ss_pred             ---cc---------cc-hhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017           69 ---VE---------LL-WEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE  135 (283)
Q Consensus        69 ---~~---------~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  135 (283)
                         ..         .+ ...+.++.+|+.+.+..+...-.-..|..+.+|+.+.+..+ ...-....+..+..|+.+.+.
T Consensus       138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             cccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence               00         01 12355678888888865431111124677788887777553 111112233445555554443


Q ss_pred             CCCCc--------------------CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          136 GCKIL--------------------GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       136 ~~~~~--------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      .+...                    ..+.......+..++.+.+..+. .......+..+..++........+   ....
T Consensus       217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~  292 (394)
T 4fs7_A          217 NSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKT  292 (394)
T ss_dssp             TTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTT
T ss_pred             CCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceee---cccc
Confidence            32110                    00111111133344444443321 111111223333333333322111   0123


Q ss_pred             hhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCccccccc-HHhhccCCC
Q 036017          196 LENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQV  272 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L  272 (283)
                      +..+.+|+.+.+..+ +..+... +..+.+|+.+++...  ++.+ ...+..|.+|+.+++..+ ++.+. ..+.+|++|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            445666666666543 4434333 456677777777542  2222 244666777777777654 55443 355677777


Q ss_pred             Cceeec
Q 036017          273 DGLSFY  278 (283)
Q Consensus       273 ~~L~l~  278 (283)
                      +.+++.
T Consensus       369 ~~i~lp  374 (394)
T 4fs7_A          369 KKVELP  374 (394)
T ss_dssp             CEEEEE
T ss_pred             CEEEEC
Confidence            777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.3e-08  Score=84.22  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=75.4

Q ss_pred             EEeeeCCCCCCcchhhccCCCCCcEEEecC-CCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017          107 RMYLLNCTNLPFISSSIENLNNLSMLRLEG-CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       107 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  185 (283)
                      .++.+++..+..+|. +..+.+|+.|++++ |.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            456665424556777 88888888999985 776553334455 788899999988887776677778888888998888


Q ss_pred             CCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          186 CSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      |.+....+..+..+. |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777754444444444 888888888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.78  E-value=1.9e-07  Score=78.64  Aligned_cols=233  Identities=15%  Similarity=0.165  Sum_probs=147.2

Q ss_pred             CcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCCCCCCCCC
Q 036017           28 QGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMPDLSETPN  104 (283)
Q Consensus        28 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  104 (283)
                      ..+..++ +|+.+.+.+. ...++...  ++.+|+.+.+..+ +..+. ..+.++..|+.+.+..+... .........+
T Consensus       156 ~aF~~c~-~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCE-SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG  231 (394)
T ss_dssp             TTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred             hhhcccC-CCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence            4577788 9999999754 34444433  7899999999765 44333 34567788888877654311 1123345678


Q ss_pred             CcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeec
Q 036017          105 LERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLY  184 (283)
Q Consensus       105 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  184 (283)
                      |+.+.+... ...-....+..+..++.+.+..+.. . +.......+..++.+......   .....+..+.+|+.+.+.
T Consensus       232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-R-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-E-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred             CceEEECCC-ceecccccccccccceeEEcCCCcc-e-eeccccccccccceeccCcee---eccccccccccccccccc
Confidence            888888653 2211223456788888888876532 2 222222267778877765532   222345678889888886


Q ss_pred             CCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCcccccc
Q 036017          185 NCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQL  262 (283)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~  262 (283)
                      .+ ...--...|.++.+|+.+++..+ ++.+.. .+..|.+|+.+.+..+  +..+ ..++..|.+|+.+++..+ ++.+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~  380 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY  380 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh
Confidence            52 32222346778889999988643 555544 3678899999999764  3333 356888899999988653 4444


Q ss_pred             cHHhhccCCCCce
Q 036017          263 PSSIADLKQVDGL  275 (283)
Q Consensus       263 ~~~~~~~~~L~~L  275 (283)
                      ...+.+|++|+.+
T Consensus       381 ~~~F~~c~~L~~I  393 (394)
T 4fs7_A          381 RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGBCTTCEEEEE
T ss_pred             hheecCCCCCcEE
Confidence            4566777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.76  E-value=1.2e-06  Score=73.82  Aligned_cols=103  Identities=18%  Similarity=0.345  Sum_probs=51.0

Q ss_pred             hcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCC-ccccCCCccc
Q 036017          172 ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKL-PDNLGSLRSL  249 (283)
Q Consensus       172 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L  249 (283)
                      +.++..|+.+.+... ....-...+.++.+|+.+.+. +.+..++.. +..|.+|+.+.+..+  ++.+ ...|..|.+|
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence            444555666655432 111112334455566666653 233334333 455666666666542  2222 2345566666


Q ss_pred             ceeecCCccccccc-HHhhccCCCCceeecc
Q 036017          250 KRLHTGKSAISQLP-SSIADLKQVDGLSFYG  279 (283)
Q Consensus       250 ~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~  279 (283)
                      +.+.+..+ ++.+. ..+.+|++|+.+++.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence            66666433 44443 3456666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=8.3e-09  Score=77.45  Aligned_cols=111  Identities=12%  Similarity=0.099  Sum_probs=70.0

Q ss_pred             CCCccCEEeccCC-cCccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017          150 SLTNLEVLDLAHC-KRLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL  215 (283)
Q Consensus       150 ~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~  215 (283)
                      ..++|++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.++     .+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            6777888888887 55332    334455677788888888776542    2334455667888888887776     24


Q ss_pred             chhhhcCCCccEEec--ccccCCC----CCccccCCCcccceeecCCcccc
Q 036017          216 PSSVEHLEGLKELRM--EYCYKLS----KLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       216 ~~~~~~~~~L~~L~l--~~~~~~~----~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ...+...++|++|++  ++|....    .+...+...++|+.|++++|.++
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            445566677777777  5554332    13333445567777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.74  E-value=1.1e-06  Score=73.95  Aligned_cols=123  Identities=12%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEE
Q 036017          150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKEL  228 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L  228 (283)
                      .+..|+.+.+... ........+.++.+|+.+.+.. ....--...|.+|.+|+.+++..+ ++.+.. .+..|.+|+.+
T Consensus       263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            5677788877653 2233344567889999999864 333223356788999999999754 555544 46789999999


Q ss_pred             ecccccCCCCC-ccccCCCcccceeecCCcccccccHHhhccCCCCceeecc
Q 036017          229 RMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG  279 (283)
Q Consensus       229 ~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~  279 (283)
                      .+..+  +..+ ...|..|.+|+.+++.++....  ..+..+.+|+.+.+..
T Consensus       340 ~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          340 AIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             EECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC-------
T ss_pred             EECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCC
Confidence            99763  3333 4568899999999998865431  3455677888887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=7.2e-08  Score=70.87  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCC-cc-ccchhhhc----CCCccEEecccccCCCCC-ccccCCCcc
Q 036017          176 KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA-IK-ELPSSVEH----LEGLKELRMEYCYKLSKL-PDNLGSLRS  248 (283)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~-~~~~~~~~----~~~L~~L~l~~~~~~~~l-~~~~~~l~~  248 (283)
                      ..|++|++++|.++..-...+..+++|++|++++|. ++ .-...+..    +++|+.|++++|..+++- -..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777776544333445667777777777764 44 11122333    245777777777655321 123445667


Q ss_pred             cceeecCCcc-cc
Q 036017          249 LKRLHTGKSA-IS  260 (283)
Q Consensus       249 L~~L~l~~~~-i~  260 (283)
                      |+.|++++|. |+
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            7777777653 55

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=2.3e-07  Score=69.56  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=63.2

Q ss_pred             hhccCCCCCcEEEecCC-CCcCC----ChhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC
Q 036017          121 SSIENLNNLSMLRLEGC-KILGP----FPAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES  191 (283)
Q Consensus       121 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~  191 (283)
                      ..+...+.|++|++++| .+...    +...+. ..++|++|++++|.+...    +...+...++|++|++++|.+...
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            34455566666666665 44321    112222 445666666666654322    233344456677777766665532


Q ss_pred             ----CchhhhcCCCCcEEee--cCCCcc-----ccchhhhcCCCccEEeccccc
Q 036017          192 ----FPGILENMARLEYIDL--RLTAIK-----ELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       192 ----~~~~~~~~~~L~~l~l--~~~~l~-----~~~~~~~~~~~L~~L~l~~~~  234 (283)
                          +...+...++|++|++  ++|.++     .+...+...++|++|++++|.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                2334455566777777  667766     244455666777777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.48  E-value=4.8e-05  Score=63.49  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEE
Q 036017          150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKEL  228 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L  228 (283)
                      .+..|+.+.+..+ +.......+.++.+|+.+.+.. .....-...+.++.+|+.+.+.++.+..+... +..|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3444555555432 1111222344555666666543 22211223456667777777766666655443 4666777777


Q ss_pred             ecccccCCCCC-ccccCCCcccceeecCC
Q 036017          229 RMEYCYKLSKL-PDNLGSLRSLKRLHTGK  256 (283)
Q Consensus       229 ~l~~~~~~~~l-~~~~~~l~~L~~L~l~~  256 (283)
                      .+..+  ++.+ ..+|..|.+|+.+.+..
T Consensus       316 ~lp~~--l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          316 TLPTA--LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred             EcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence            77542  2222 23466667777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=2.7e-07  Score=67.82  Aligned_cols=85  Identities=13%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcC----CCCcEEeecCCC-cc--ccchhhhcCCC
Q 036017          153 NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES-FPGILENM----ARLEYIDLRLTA-IK--ELPSSVEHLEG  224 (283)
Q Consensus       153 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~----~~L~~l~l~~~~-l~--~~~~~~~~~~~  224 (283)
                      .|+.||+++|.+...-...+.++++|++|++++|...+. --..+...    ++|++|++++|. ++  .+ ..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence            567777777664443334456677777777777764443 11333332    467888888764 65  33 34567888


Q ss_pred             ccEEecccccCCCC
Q 036017          225 LKELRMEYCYKLSK  238 (283)
Q Consensus       225 L~~L~l~~~~~~~~  238 (283)
                      |+.|++++|+.+++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888877754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.31  E-value=0.00011  Score=61.19  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEE
Q 036017          150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKEL  228 (283)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L  228 (283)
                      .+.+++.+.+..+ ........+..+..|+.+.+..+ ...--...+..+.+|+.+.+..+ +..++. .+..+++|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3445555555432 22222334556777777777652 22222245667788888887643 444444 35788999999


Q ss_pred             ecccccCCCCCccccCCCcccceeecCCccccccc-HHhhccCCCCceeec
Q 036017          229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQVDGLSFY  278 (283)
Q Consensus       229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~  278 (283)
                      .+.++.....-...+..|.+|+.+.+..+ ++.+. ..+.+|++|+++.+.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            99864433222456788899999998754 66554 467888999988774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.99  E-value=1.1e-05  Score=63.69  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             CCCCCCeEeecCCCCCC--CCchhhhcCCCCcEEeecCCCccc
Q 036017          174 KLKSLSWLRLYNCSKLE--SFPGILENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       174 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~  214 (283)
                      .+++|++|++++|.+.+  .++..+..+++|+.|++++|.+..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            34555555555555443  233334455555555555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=6.8e-06  Score=64.84  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             hcCCCCcEEeecCCCcccc---chhhhcCCCccEEecccccCCCCCccccCCCc--ccceeecCCcccc-ccc-------
Q 036017          197 ENMARLEYIDLRLTAIKEL---PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLR--SLKRLHTGKSAIS-QLP-------  263 (283)
Q Consensus       197 ~~~~~L~~l~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~-~~~-------  263 (283)
                      ..+++|+.|++++|.++.+   +..+..+++|+.|++++|...+ + ..+..+.  +|+.|++++|.+. .+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4578888888888888744   3556788888888888866543 2 2233333  7888888888886 333       


Q ss_pred             HHhhccCCCCceee
Q 036017          264 SSIADLKQVDGLSF  277 (283)
Q Consensus       264 ~~~~~~~~L~~L~l  277 (283)
                      ..+..+|+|+.|+=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            34577888888763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=0.00011  Score=54.88  Aligned_cols=111  Identities=15%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             CCCccCEEeccCC-cCcc----cchhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017          150 SLTNLEVLDLAHC-KRLN----RLSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL  215 (283)
Q Consensus       150 ~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~  215 (283)
                      .-+.|++|+++++ .+..    .+...+..-..|++|++++|.+...    +...+..-..|++|+++.|.++     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            5567888888875 4322    2344566667788888888777532    3345556677888888888877     34


Q ss_pred             chhhhcCCCccEEecccccC--CC-----CCccccCCCcccceeecCCcccc
Q 036017          216 PSSVEHLEGLKELRMEYCYK--LS-----KLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       216 ~~~~~~~~~L~~L~l~~~~~--~~-----~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ...+..-+.|++|++++|..  ++     .+.+.+..-++|..|+++.+.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            44455666788888875432  22     13333444566777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.21  E-value=0.0004  Score=51.89  Aligned_cols=113  Identities=14%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             chhhhcCCCCCCeEeecCC-CCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCC
Q 036017          168 LSASICKLKSLSWLRLYNC-SKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       168 ~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      +...+..-+.|++|+++++ .+...    +...+..-..|+.|++++|.++     .+...+..-+.|+.|+|++|....
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3334556788999999885 44321    3345666788999999999998     566667788999999999987552


Q ss_pred             ----CCccccCCCcccceeecCCc---ccc-----cccHHhhccCCCCceeeccC
Q 036017          238 ----KLPDNLGSLRSLKRLHTGKS---AIS-----QLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       238 ----~l~~~~~~l~~L~~L~l~~~---~i~-----~~~~~~~~~~~L~~L~l~~c  280 (283)
                          .+.+.+..-..|+.|+++++   .+.     .+...+..-+.|++|+++.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence                34455667778999999865   454     35566778889999998765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.58  E-value=0.022  Score=39.46  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=40.5

Q ss_pred             cEEeecCCCcc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          203 EYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       203 ~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      ..++-+++.++  .+|..  -.++|+.|+|++|.....-+..+..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777777  77754  2346889999987655444455677888999999988775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.88  E-value=0.067  Score=36.95  Aligned_cols=12  Identities=25%  Similarity=0.199  Sum_probs=4.7

Q ss_pred             ceEEecCCCCcc
Q 036017           59 LVVLNLPCSNVE   70 (283)
Q Consensus        59 L~~l~l~~~~~~   70 (283)
                      |+.|+|++|.+.
T Consensus        33 l~~L~Ls~N~l~   44 (130)
T 3rfe_A           33 TTELVLTGNNLT   44 (130)
T ss_dssp             CSEEECTTSCCS
T ss_pred             CCEEECCCCcCC
Confidence            333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 1/156 (0%)

Query: 111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA 170
           + C++L       +   + ++L L+  KI          +L NL  L L + K       
Sbjct: 15  VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPG 73

Query: 171 SICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM 230
           +   L  L  L L      E    + + +  L   +  +T +++   +  +   + EL  
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI 266
                          ++ L  +    + I+ +P  +
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 2/192 (1%)

Query: 37  LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRM 96
           L  L+     L+ LP  +      +        ++         ++  V+L  +   +  
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 97  PDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEV 156
            +      ++++  +   +    +       +L+ L L+G KI     A +   L NL  
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK-GLNNLAK 199

Query: 157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELP 216
           L L+        + S+     L  L L N  KL   PG L +   ++ + L    I  + 
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 217 SSVEHLEGLKEL 228
           S+     G    
Sbjct: 259 SNDFCPPGYNTK 270

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 11/172 (6%)

Query: 37  LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRM 96
           L  L  +G  L+ + T  S   L  L+L  + +  L        KL  + L     ++ +
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGA-NQISNI 278

Query: 97  PDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEV 156
             L+    L  +      N     S I NL NL+ L L    I    P     SLT L+ 
Sbjct: 279 SPLAGLTALTNLE--LNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQR 333

Query: 157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLR 208
           L  A+ K ++ +S S+  L +++WL   +  ++      L N+ R+  + L 
Sbjct: 334 LFFANNK-VSDVS-SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 16/196 (8%)

Query: 39  YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPD 98
            L      +  +        L  L+L  + ++ +         L  +DL N+Q ++ +  
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ-ISNLAP 258

Query: 99  LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLD 158
           LS    L  + L          S+I  L  L+ L                 +L NL  L 
Sbjct: 259 LSGLTKLTELKLGANQ-----ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 159 LAHCKRLNRLS--ASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELP 216
           L      N +S  + +  L  L  L   N  K+      L N+  + ++      I +L 
Sbjct: 314 LYF----NNISDISPVSSLTKLQRLFFANN-KVSDVSS-LANLTNINWLSAGHNQISDLT 367

Query: 217 SSVEHLEGLKELRMEY 232
             + +L  + +L +  
Sbjct: 368 -PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 1   MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLV 60
           +TNL  L    + L+    ++S  +L             L      +  L       KL 
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLTNL-----------TDLDLANNQISNLAPLSGLTKLT 266

Query: 61  VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS 120
            L L  + +  +                N           +      +Y  N +++  +S
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326

Query: 121 SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180
               +L  L  L     K+     +  +L  TN+  L   H  +++ L+  +  L  ++ 
Sbjct: 327 ----SLTKLQRLFFANNKVSDV-SSLANL--TNINWLSAGHN-QISDLTP-LANLTRITQ 377

Query: 181 LRLYN 185
           L L +
Sbjct: 378 LGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 151 LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLT 210
             +LE L++++ K L  L A   +L+ L      + + L   P + +N   L+ + +   
Sbjct: 283 PPSLEELNVSNNK-LIELPALPPRLERLIA----SFNHLAEVPELPQN---LKQLHVEYN 334

Query: 211 AIKELPSSVEHLEGLK 226
            ++E P   E +E L+
Sbjct: 335 PLREFPDIPESVEDLR 350

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHC 162
            NL  + L N      +   +  L  L  L +    + G  P     +L   +V   A+ 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANN 301

Query: 163 KRL 165
           K L
Sbjct: 302 KCL 304

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 5/198 (2%)

Query: 82  LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG 141
              V+ C+ +NLT +P      +   ++L       F  +++     L+ L L+  ++  
Sbjct: 12  HLEVN-CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 142 PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMAR 201
                    L  L  LDL+H +  +                 +N         +      
Sbjct: 70  LQVDGT---LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 202 LEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ 261
            E            P  +     L++L +            L  L +L  L   ++++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 262 LPSSIADLKQVDGLSFYG 279
           +P        +     +G
Sbjct: 187 IPKGFFGSHLLPFAFLHG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.3e-25  Score=181.00  Aligned_cols=243  Identities=16%  Similarity=0.217  Sum_probs=191.3

Q ss_pred             CceEEEecCCCCC---ccCCCC-CCCcceEEecCC-CCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017           36 ELRYLHWHGYPLR---TLPTNL-STDKLVVLNLPC-SNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM  108 (283)
Q Consensus        36 ~L~~L~l~~~~~~---~~~~~~-~~~~L~~l~l~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L  108 (283)
                      +++.|+++++.+.   .+|..+ ++++|++|++++ |.+. .+|..+.++++|++|++++|.+....+ .+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6888999888774   456655 789999999986 6666 688888889999999998887655444 46778888999


Q ss_pred             eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc-CEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017          109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL-EVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      +++.|.....+|..+..+++++.+++++|.+.+.+|..+. .+..+ +.+++++|++.+..+..+..+.. ..+++..+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccc-ccccccccccccccccccccccccccccc-ccccccccc
Confidence            9888777777788888889999999998887777777776 55554 78888888776666666665543 467777777


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHh
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSI  266 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~  266 (283)
                      ..+..+..+..+++++.+++.++.+...+..++.+++|+.|++++|...+.+|+.+.++++|++|++++|.++ .+|. +
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            7777777777888899999888888865566778888999999988777788888888889999999999888 6775 4


Q ss_pred             hccCCCCceeeccCC
Q 036017          267 ADLKQVDGLSFYGCR  281 (283)
Q Consensus       267 ~~~~~L~~L~l~~c~  281 (283)
                      .++++|+.+++.+|+
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            677888888888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.8e-23  Score=172.21  Aligned_cols=256  Identities=23%  Similarity=0.295  Sum_probs=171.8

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|+++++.++         ++ +++..++ +|++|+++++.++.+++..++++|++|++++|.+..++. ++++++
T Consensus        44 ~~l~~L~l~~~~I~---------~l-~gl~~L~-nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~  111 (384)
T d2omza2          44 DQVTTLQADRLGIK---------SI-DGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTN  111 (384)
T ss_dssp             TTCCEEECCSSCCC---------CC-TTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CCCCEEECCCCCCC---------Cc-cccccCC-CCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccc
Confidence            46888888877766         33 4566777 888888888888887765588888888888888877653 677888


Q ss_pred             ccEEEccCCCCCCC----------------------------------------------------------------CC
Q 036017           82 LKSVDLCNSQNLTR----------------------------------------------------------------MP   97 (283)
Q Consensus        82 L~~L~l~~~~~~~~----------------------------------------------------------------~~   97 (283)
                      |+.+++.++.....                                                                ..
T Consensus       112 L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            88888765442110                                                                00


Q ss_pred             CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCC
Q 036017           98 DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKS  177 (283)
Q Consensus        98 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  177 (283)
                      ....+++++.+.++++......+  ...+++|+.+++++|.+.. ++ .+. .+++|+.+++++|.+.+..  .++.+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhh-cccccchhccccCccCCCC--ccccccc
Confidence            12334556666666654332222  3445566666666665433 33 222 5566666666665543222  2445556


Q ss_pred             CCeEeecCCCCCCC--------------------CchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017          178 LSWLRLYNCSKLES--------------------FPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       178 L~~L~l~~~~~~~~--------------------~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  237 (283)
                      |++++++++.+.+.                    ....+..+++++.+++++|.++.++ .+..+++|+.|++++|. ++
T Consensus       265 L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~  342 (384)
T d2omza2         265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VS  342 (384)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CC
T ss_pred             CCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CC
Confidence            66666655443321                    1124667788999999999988775 37889999999999985 45


Q ss_pred             CCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccC
Q 036017          238 KLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC  280 (283)
Q Consensus       238 ~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c  280 (283)
                      .++ .+..+++|++|++++|.+++++. +.++++|++|+++++
T Consensus       343 ~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            554 57889999999999999998865 788999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.2e-24  Score=176.79  Aligned_cols=249  Identities=20%  Similarity=0.229  Sum_probs=209.2

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecC-CCC-CccCCCC-CCCcceEEecCCCCcccch-hhhhc
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHG-YPL-RTLPTNL-STDKLVVLNLPCSNVELLW-EEKKE   78 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~l~~   78 (283)
                      ++..|+++++.+.|      ...+|..+.+++ +|++|++++ +.+ +.+|..+ ++++|++|++++|.+..++ ..+..
T Consensus        51 ~v~~L~L~~~~l~g------~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          51 RVNNLDLSGLNLPK------PYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CEEEEEEECCCCSS------CEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             EEEEEECCCCCCCC------CCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccc
Confidence            68899999998887      336789999999 999999987 565 5788777 8999999999999998654 45778


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCC-cEEEecCCCCcCCChhHhhcCCCccCE
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNL-SMLRLEGCKILGPFPAFISLSLTNLEV  156 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~  156 (283)
                      +.+|+.+++..|.....++ .+..+++++.+++++|...+.+|..+..+..+ +.+++++|.+.+..+..+. .+. ...
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~-~l~-~~~  201 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAF  201 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSE
T ss_pred             hhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccc-ccc-ccc
Confidence            8999999999998777676 68899999999999988777788888888775 7899999888776666664 444 457


Q ss_pred             EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccC
Q 036017          157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      +++..+......+..+..+++++.+++.++.+.... ..+..+++|+.|++++|.++ .+|..++.+++|++|++++|..
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            899888877788888888999999999998876654 45778899999999999999 8999999999999999999987


Q ss_pred             CCCCccccCCCcccceeecCCcc-cccc
Q 036017          236 LSKLPDNLGSLRSLKRLHTGKSA-ISQL  262 (283)
Q Consensus       236 ~~~l~~~~~~l~~L~~L~l~~~~-i~~~  262 (283)
                      .+.+|+ +..+++|+.+++++|+ +.+.
T Consensus       281 ~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         281 CGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cccCCC-cccCCCCCHHHhCCCccccCC
Confidence            777874 5788999999999987 4443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=5.7e-22  Score=164.99  Aligned_cols=238  Identities=21%  Similarity=0.254  Sum_probs=184.4

Q ss_pred             CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017           31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL  110 (283)
Q Consensus        31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  110 (283)
                      ..+. +|++|+++++++..+.....+++|++|++++|.++.++. +.++++|+.|++++|.+ ..+++++.+++|+.+++
T Consensus        41 ~~l~-~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i-~~i~~l~~l~~L~~L~~  117 (384)
T d2omza2          41 TDLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTL  117 (384)
T ss_dssp             HHHT-TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEEC
T ss_pred             HHhC-CCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccc-ccccccccccccccccc
Confidence            3466 899999999999888644489999999999999998874 88999999999999984 45667889999999988


Q ss_pred             eCCCCCCc---------------------------------------------------------------chhhccCCC
Q 036017          111 LNCTNLPF---------------------------------------------------------------ISSSIENLN  127 (283)
Q Consensus       111 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~  127 (283)
                      .++.....                                                               .......++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            76433210                                                               011345668


Q ss_pred             CCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEee
Q 036017          128 NLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDL  207 (283)
Q Consensus       128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  207 (283)
                      +++.++++++.+.+ ++.. . .+++|+.|++++|.+.. ++ .+..+++|+.+++.+|.+.+. + .+..+++|+++++
T Consensus       198 ~~~~l~l~~n~i~~-~~~~-~-~~~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l  270 (384)
T d2omza2         198 NLESLIATNNQISD-ITPL-G-ILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKL  270 (384)
T ss_dssp             TCSEEECCSSCCCC-CGGG-G-GCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             ccceeeccCCccCC-CCcc-c-ccCCCCEEECCCCCCCC-cc-hhhcccccchhccccCccCCC-C-cccccccCCEeec
Confidence            89999999988765 3332 2 67899999999987543 33 577899999999999877653 3 3677889999999


Q ss_pred             cCCCccccc---------------------hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHh
Q 036017          208 RLTAIKELP---------------------SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI  266 (283)
Q Consensus       208 ~~~~l~~~~---------------------~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~  266 (283)
                      +++.+..++                     ..+..+++++.|++++|.. ..++ .+..+++|+.|++++|.++.++ .+
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l-~~l~-~l~~l~~L~~L~L~~n~l~~l~-~l  347 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDIS-PVSSLTKLQRLFFANNKVSDVS-SL  347 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCCG-GGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             cCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCC-CCCc-ccccCCCCCEEECCCCCCCCCh-hH
Confidence            888765332                     2355667788888888754 4443 3678899999999999999887 47


Q ss_pred             hccCCCCceeeccCC
Q 036017          267 ADLKQVDGLSFYGCR  281 (283)
Q Consensus       267 ~~~~~L~~L~l~~c~  281 (283)
                      ..+++|++|++++|+
T Consensus       348 ~~l~~L~~L~l~~N~  362 (384)
T d2omza2         348 ANLTNINWLSAGHNQ  362 (384)
T ss_dssp             GGCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            889999999998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=7.8e-22  Score=159.33  Aligned_cols=220  Identities=15%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeC
Q 036017           36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLN  112 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  112 (283)
                      ++++|+++++.++.++. .+ ++++|+.++++++.+..+ +..+.++++|+.|++.+|.. ..++. .....++.|.+..
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l-~~l~~-~~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPE-KMPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCS-SCCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc-CcCcc-chhhhhhhhhccc
Confidence            67777777777666654 23 667777777777666655 33456667777777766652 23321 2234555555555


Q ss_pred             CCCCCcchhhccCCCCCcEEEecCCCCcC--CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017          113 CTNLPFISSSIENLNNLSMLRLEGCKILG--PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE  190 (283)
Q Consensus       113 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  190 (283)
                      +......+..+........+....+....  ..+..+. .+++|+.+++.+|.+.. ++..  .++++++|++.++....
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCE
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccc-cccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCC
Confidence            43332222223333344444444332111  1111222 34444555544443221 1111  13444555554444443


Q ss_pred             CCchhhhcCCCCcEEeecCCCccccc-hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccc
Q 036017          191 SFPGILENMARLEYIDLRLTAIKELP-SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL  262 (283)
Q Consensus       191 ~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~  262 (283)
                      ..+..+..++.++++++++|.+..++ ..+..+++|++|++++|. ++.+|..+..+++|++|++++|.|+.+
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCCccCcc
Confidence            33344444444555555554444332 223444455555555442 233444444445555555555444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=7.6e-21  Score=153.45  Aligned_cols=242  Identities=15%  Similarity=0.120  Sum_probs=195.0

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCC-cCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhc
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQ-GLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKE   78 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~   78 (283)
                      +++++|++++|.++         .++. .+..++ +|++|+++++.+..+++ .+ .++.|+.+++++|.++.++...  
T Consensus        31 ~~l~~L~Ls~N~i~---------~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--   98 (305)
T d1xkua_          31 PDTALLDLQNNKIT---------EIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--   98 (305)
T ss_dssp             TTCCEEECCSSCCC---------CBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--
T ss_pred             CCCCEEECcCCcCC---------CcChhHhhccc-cccccccccccccccchhhhhCCCccCEecccCCccCcCccch--
Confidence            57899999999888         4554 688899 99999999999988755 34 8999999999999999887643  


Q ss_pred             cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017           79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE  155 (283)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (283)
                      ...++.|.+.++....... .+.....+..+....+....  .....+..+++|+.+++.++.+.. ++..   .+++|+
T Consensus        99 ~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~---~~~~L~  174 (305)
T d1xkua_          99 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG---LPPSLT  174 (305)
T ss_dssp             CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS---CCTTCS
T ss_pred             hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc---cCCccC
Confidence            5688999998887443222 35567777888876654322  334567788999999999987654 4433   468999


Q ss_pred             EEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccC
Q 036017          156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK  235 (283)
Q Consensus       156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  235 (283)
                      .|+++++......+..+..++.+++|++++|.+....+..+..+++|++|++++|.++.+|..+..+++|+.|++++|. 
T Consensus       175 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-  253 (305)
T d1xkua_         175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-  253 (305)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-
T ss_pred             EEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc-
Confidence            9999998877777778889999999999998888777788889999999999999999999889999999999999976 


Q ss_pred             CCCCcc-------ccCCCcccceeecCCcccc
Q 036017          236 LSKLPD-------NLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       236 ~~~l~~-------~~~~l~~L~~L~l~~~~i~  260 (283)
                      ++.++.       .....++|+.|++++|.++
T Consensus       254 i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            444432       2345678999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.4e-21  Score=152.77  Aligned_cols=246  Identities=19%  Similarity=0.240  Sum_probs=180.1

Q ss_pred             cccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcE
Q 036017           33 LPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLER  107 (283)
Q Consensus        33 ~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~  107 (283)
                      +|..+++|+++++.++.++.. + ++++|+.++++++.+..++. .+..+..++.+.+........++  .+..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            345899999999999888764 3 88999999999999886654 34557888888876555555554  5788999999


Q ss_pred             EeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017          108 MYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS  187 (283)
Q Consensus       108 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  187 (283)
                      |+++++......+..+..+++|+.+++++|.+.+..+..+. .+++|+.|++++|.+....+..+.++++|+.+++.+|.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~-~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhc-cccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            99998776555555677888999999999987653334444 78899999999988766666778889999999999988


Q ss_pred             CCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHH
Q 036017          188 KLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSS  265 (283)
Q Consensus       188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~  265 (283)
                      +.+..+..+..+++|+++++++|.+..++. .++.+++|+.|++++|+...+-... .-...++.+....+.++ ..|..
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            887777888999999999999999996654 5788999999999997655332110 00123455555555665 55555


Q ss_pred             hhc--cCCCCceeeccC
Q 036017          266 IAD--LKQVDGLSFYGC  280 (283)
Q Consensus       266 ~~~--~~~L~~L~l~~c  280 (283)
                      +.+  +..+..-+++||
T Consensus       268 l~g~~l~~l~~~~l~gc  284 (284)
T d1ozna_         268 LAGRDLKRLAANDLQGC  284 (284)
T ss_dssp             GTTCBGGGSCGGGSCCC
T ss_pred             HcCCccccCCHHHCCCc
Confidence            533  223333355554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-20  Score=147.90  Aligned_cols=197  Identities=16%  Similarity=0.096  Sum_probs=130.1

Q ss_pred             CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCT  114 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  114 (283)
                      .+.+++.++..+..+|..+ .++++.|++++|.+..++ ..+.++++|+.|++++|. +..++.++.+++|++|++++|.
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred             CCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccccccccccccccccccc
Confidence            3444566666666666543 246777777777777665 345667777777777775 3445556667777777777764


Q ss_pred             CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017          115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG  194 (283)
Q Consensus       115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  194 (283)
                      . ...+..+..+++|+.|+++++......+..+. .+.+++.+++++|.+....+..+..+++++.+++++|.+....+.
T Consensus        89 l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          89 L-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             C-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             c-cccccccccccccccccccccccceeeccccc-cccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            3 33444566677777777777765442233333 667777777777765555455556677777777777777665556


Q ss_pred             hhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017          195 ILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       195 ~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      .+..+++|++|++++|.++.+|..+..+++|+.|++++|+..
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            667777788888888887777777777777888888776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4e-20  Score=147.65  Aligned_cols=220  Identities=15%  Similarity=0.138  Sum_probs=174.3

Q ss_pred             EEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCC
Q 036017           39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNL  116 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  116 (283)
                      .+..++.++..+|... ...+++|++++|.++.++. .+.++++|+.++++++......+ .+..+..++.+.+......
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4566777778887654 3578999999999998875 57889999999999887444333 4677888898887655444


Q ss_pred             Ccc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017          117 PFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI  195 (283)
Q Consensus       117 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  195 (283)
                      ..+ +..+..+++|++|++++|......+..+. ..++|+.+++.+|.+....+..+..+++|++|++++|.+....+..
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            443 55678899999999999886543334444 7888999999998876655667788899999999998877656677


Q ss_pred             hhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017          196 LENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       196 ~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~  260 (283)
                      +.++++|+.+++++|.++.+ |..+..+++|+.|++++|...+..+..+..+++|++|++++|.+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            88899999999999999854 667889999999999998877766678889999999999998876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=142.98  Aligned_cols=195  Identities=21%  Similarity=0.139  Sum_probs=158.1

Q ss_pred             ceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchhhhhccCC
Q 036017            4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      +.+++.++++++         .+|..+   |+++++|+++++.+..++.. + ++++|+.|++++|.+..++. ++.+++
T Consensus        12 ~~~v~C~~~~L~---------~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~   78 (266)
T d1p9ag_          12 HLEVNCDKRNLT---------ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPV   78 (266)
T ss_dssp             CCEEECTTSCCS---------SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTT
T ss_pred             CeEEEccCCCCC---------eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccc
Confidence            344555555555         456543   44899999999999888753 3 89999999999999998764 467999


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH  161 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (283)
                      |+.|++++|......+.+..+++|+.|+++++......+..+..+.+++++++.+|.+.. ++......+++++.+++++
T Consensus        79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccce-eccccccccccchhccccc
Confidence            999999999865555578889999999999987665555667888999999999998765 5544443789999999999


Q ss_pred             CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017          162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK  213 (283)
Q Consensus       162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  213 (283)
                      |++....+..+..+++|++|++++|.+. .+|..+..+++|+.+++++|.+.
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9877776777889999999999998876 68877888999999999999775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.1e-18  Score=130.32  Aligned_cols=189  Identities=19%  Similarity=0.276  Sum_probs=104.9

Q ss_pred             hccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCE
Q 036017           77 KEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEV  156 (283)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  156 (283)
                      +.+.+|+.|++.++. +..++.+..+++|++|++++|.... .. .+..+++++.++++++.+.. ++. +. .+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~-i~~-l~-~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKN-VSA-IA-GLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSC-CGG-GT-TCTTCCE
T ss_pred             HHcCCcCEEECCCCC-CCcchhHhcCCCCcEeecCCceeec-cc-cccccccccccccccccccc-ccc-cc-ccccccc
Confidence            334455555555554 2233444555555555555543322 11 24555555555555554432 322 22 5566666


Q ss_pred             EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017          157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL  236 (283)
Q Consensus       157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  236 (283)
                      ++++++......  .+...+.++.+.+..+.....  ..+..+++|+.+++.+|.+..++. ++.+++|++|++++|. +
T Consensus       112 l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~-l  185 (227)
T d1h6ua2         112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-I  185 (227)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C
T ss_pred             cccccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccchh-hcccccceecccCCCc-c
Confidence            666554432221  233455566666655444322  234556667777777776664433 5667777777777764 3


Q ss_pred             CCCccccCCCcccceeecCCcccccccHHhhccCCCCceeecc
Q 036017          237 SKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG  279 (283)
Q Consensus       237 ~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~  279 (283)
                      ..++ .+..+++|++|++++|.+++++. +.++++|+.|++++
T Consensus       186 ~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CCCh-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            4443 35667778888888887777754 66778888887753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.8e-17  Score=125.79  Aligned_cols=187  Identities=19%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      ++.+|+.+++.++.++.+. .+..+++|+.|++++|. ...+.++..+++++.+.++++... .++ .+..+++|+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eecccccccccccccccccccccc-ccc-ccccccccccccc
Confidence            3445555555555555442 34455555555555554 222333455555555555544322 221 2345555555555


Q ss_pred             cCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc
Q 036017          135 EGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  214 (283)
                      +++...+ .+. +. ..+.++.+.++.+......  .+..+++|++|++.+|.....  ..+..+++|+.+++++|.++.
T Consensus       115 ~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         115 TSTQITD-VTP-LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccc-cch-hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            5544322 111 11 4455555555554432221  234455566666655444322  124555666666666666655


Q ss_pred             cchhhhcCCCccEEecccccCCCCCccccCCCcccceeecC
Q 036017          215 LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTG  255 (283)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  255 (283)
                      ++. ++.+++|++|++++|+ ++.++ .+..+++|+.|+++
T Consensus       188 l~~-l~~l~~L~~L~Ls~N~-lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEE
T ss_pred             Chh-hcCCCCCCEEECcCCc-CCCCc-ccccCCCCCEEEee
Confidence            432 4556666666666653 33343 25556666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-17  Score=131.24  Aligned_cols=178  Identities=22%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             CCccEEEccCCCCCCC-CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCC-ChhHhhcCCCccCE
Q 036017           80 FKLKSVDLCNSQNLTR-MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP-FPAFISLSLTNLEV  156 (283)
Q Consensus        80 ~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~  156 (283)
                      .+|++|+++++..... +. .+..+++|++|.+.+|......+..+..+++|++|++++|...++ .-..+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3455555554432211 11 134455555555555443333344444555555555555432211 11111224455555


Q ss_pred             EeccCCcCccc--chhhh-cCCCCCCeEeecCCCC-CCC--CchhhhcCCCCcEEeecCCC-cc-ccchhhhcCCCccEE
Q 036017          157 LDLAHCKRLNR--LSASI-CKLKSLSWLRLYNCSK-LES--FPGILENMARLEYIDLRLTA-IK-ELPSSVEHLEGLKEL  228 (283)
Q Consensus       157 L~l~~~~~~~~--~~~~l-~~~~~L~~L~l~~~~~-~~~--~~~~~~~~~~L~~l~l~~~~-l~-~~~~~~~~~~~L~~L  228 (283)
                      |++++|.....  +...+ ..+++|+.|++.++.. .+.  +......+++|++|++++|. ++ .....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            55555432211  11111 1234555555554321 111  22223344555555555432 33 223334445555555


Q ss_pred             ecccccCCC-CCccccCCCcccceeecCCc
Q 036017          229 RMEYCYKLS-KLPDNLGSLRSLKRLHTGKS  257 (283)
Q Consensus       229 ~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~  257 (283)
                      ++++|..++ .....+.++++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555554332 11223344455555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.4e-16  Score=121.04  Aligned_cols=166  Identities=17%  Similarity=0.156  Sum_probs=132.3

Q ss_pred             CcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeee
Q 036017           32 YLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLL  111 (283)
Q Consensus        32 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  111 (283)
                      .+. .|++|+++++.+..++....+++|++|++++|.+..++. +..+++|+.|++++|. ...++.+..+++|+.++++
T Consensus        44 ~L~-~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred             Hhc-CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-ccccccccccccccccccc
Confidence            356 899999999998887765589999999999999988764 6788999999999987 4556678889999999998


Q ss_pred             CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC
Q 036017          112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES  191 (283)
Q Consensus       112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  191 (283)
                      ++... .+ ..+..+++++.++++++.+.+ .+ ... .+++|+.+++++|.+.+ ++ .++.+++|++|++++|.+. .
T Consensus       121 ~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~-~~-~~~-~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         121 HNGIS-DI-NGLVHLPQLESLYLGNNKITD-IT-VLS-RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TSCCC-CC-GGGGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             ccccc-cc-ccccccccccccccccccccc-cc-ccc-ccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            87643 33 357788999999999987654 33 333 78899999999987654 33 3778999999999998765 4


Q ss_pred             CchhhhcCCCCcEEeecC
Q 036017          192 FPGILENMARLEYIDLRL  209 (283)
Q Consensus       192 ~~~~~~~~~~L~~l~l~~  209 (283)
                      ++ .+..+++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            54 578899999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.8e-17  Score=125.23  Aligned_cols=220  Identities=17%  Similarity=0.224  Sum_probs=125.7

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCT  114 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~  114 (283)
                      +.++.++..+..+|... ..++++|++++|.+..++. .+.++++|+.|++++|.....++  .+..++.++++.+..+.
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            45666666667776543 2467788888888777664 35677788888887776555443  35667777777765433


Q ss_pred             CCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc
Q 036017          115 NLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP  193 (283)
Q Consensus       115 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  193 (283)
                      ... ..+..+..+++|+++++.++.+.. .+.. . .+.+++.+.                     .+....+.......
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~-~-~~~~l~~l~---------------------~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKH-LPDV-H-KIHSLQKVL---------------------LDIQDNINIHTIER  145 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCS-CCCC-T-TTCBSSCEE---------------------EEEESCTTCCEECT
T ss_pred             cccccccccccccccccccccchhhhcc-cccc-c-ccccccccc---------------------cccccccccccccc
Confidence            332 333445677777777777765433 2211 1 222222221                     11111111111111


Q ss_pred             hhhhcC-CCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcc-ccCCCcccceeecCCcccccccH-HhhccC
Q 036017          194 GILENM-ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD-NLGSLRSLKRLHTGKSAISQLPS-SIADLK  270 (283)
Q Consensus       194 ~~~~~~-~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~  270 (283)
                      ..+.++ ..++.+++.+|.++.++..+.....++++....+..++.++. .+.++++|++|++++|.++.+|. .+.+++
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             cccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            122222 356667777777776666555556666665544455555543 36777788888888777776654 456666


Q ss_pred             CCCceeeccCCC
Q 036017          271 QVDGLSFYGCRG  282 (283)
Q Consensus       271 ~L~~L~l~~c~~  282 (283)
                      .|+.+++.++++
T Consensus       226 ~L~~l~~~~l~~  237 (242)
T d1xwdc1         226 KLRARSTYNLKK  237 (242)
T ss_dssp             EEESSSEESSSC
T ss_pred             ccccCcCCCCCc
Confidence            677776666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=5e-15  Score=120.93  Aligned_cols=95  Identities=22%  Similarity=0.219  Sum_probs=75.8

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      .++++|+++++.++         .+|+.   .| +|++|+++++.+.++|..  ..+|+.|+++++.+..++. +  .+.
T Consensus        38 ~~l~~LdLs~~~L~---------~lp~~---~~-~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~-l--p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLS---------SLPEL---PP-HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD-L--PPL   99 (353)
T ss_dssp             HTCSEEECTTSCCS---------CCCSC---CT-TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS-C--CTT
T ss_pred             cCCCEEEeCCCCCC---------CCCCC---CC-CCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh-h--ccc
Confidence            36889999988877         46642   45 999999999999988865  4689999999998887653 1  256


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017           82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN  115 (283)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  115 (283)
                      |++|++++|. ...++.++.+++|+.++++++..
T Consensus       100 L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         100 LEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccccc-cccccchhhhccceeeccccccc
Confidence            9999999987 55677788899999999987654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-17  Score=131.01  Aligned_cols=222  Identities=17%  Similarity=0.164  Sum_probs=148.0

Q ss_pred             ceEEEecCCCCCc-cCCCCCCCcceEEecCCCCcc--cchhhhhccCCccEEEccCCCCCCCC-CCCCCCCCCcEEeeeC
Q 036017           37 LRYLHWHGYPLRT-LPTNLSTDKLVVLNLPCSNVE--LLWEEKKEAFKLKSVDLCNSQNLTRM-PDLSETPNLERMYLLN  112 (283)
Q Consensus        37 L~~L~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~  112 (283)
                      +..+.+....... ........+|++++++++.+.  .+...+..+++|++|++.++...... ..++.+++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3444444433322 222235678999999998876  34455678999999999998743332 2467889999999999


Q ss_pred             CCCCCc--chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccCCcC--c-ccchhhhcCCCCCCeEeecC
Q 036017          113 CTNLPF--ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCKR--L-NRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       113 ~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~--~-~~~~~~l~~~~~L~~L~l~~  185 (283)
                      |..+.+  +......+++|++|++++|....+  +...+...+++|+.|+++++..  . ..+......+++|++|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            876653  333456889999999998753321  2233433568899999987632  2 12333456789999999999


Q ss_pred             CCCCC-CCchhhhcCCCCcEEeecCC-Ccc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccc
Q 036017          186 CSKLE-SFPGILENMARLEYIDLRLT-AIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ  261 (283)
Q Consensus       186 ~~~~~-~~~~~~~~~~~L~~l~l~~~-~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~  261 (283)
                      |...+ .....+.++++|++|++++| .++ .....++.+++|+.|++.+|...+.+......+|+|+   +..+.++.
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~  260 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT  260 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCC
Confidence            87544 45567788999999999996 455 3334577899999999999833333333233445444   45555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-15  Score=114.02  Aligned_cols=162  Identities=23%  Similarity=0.296  Sum_probs=105.6

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      .+++++.|+++++.+..+. .+..+++|+.|++++|. ...+++++.+++|++|++++|... .++ .+..+++|+.+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccc-ccCcccccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            4566777777777666553 35667777777777765 334445677777777777765432 232 3567777777777


Q ss_pred             cCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc
Q 036017          135 EGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  214 (283)
                      +++.... .+ .+. .+++|+.+++++|.+. .++ .+..+++++.|++.+|.+.+ ++ .+.++++|+.|++++|.++.
T Consensus       114 ~~~~~~~-~~-~~~-~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         114 FNNQITD-ID-PLK-NLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCC-CG-GGT-TCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccc-cc-ccc-hhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            7766543 22 233 6777888888776643 222 46677788888887766554 32 36777888888888888777


Q ss_pred             cchhhhcCCCccEE
Q 036017          215 LPSSVEHLEGLKEL  228 (283)
Q Consensus       215 ~~~~~~~~~~L~~L  228 (283)
                      ++ .++.+++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            65 46677777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1e-15  Score=115.14  Aligned_cols=176  Identities=18%  Similarity=0.241  Sum_probs=112.8

Q ss_pred             ecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCC
Q 036017           63 NLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP  142 (283)
Q Consensus        63 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  142 (283)
                      .++.+.+.... ....+++++.|++.++. +..++.+..+++|++|++++|... .++ .+..+++|+.|++++|.+.. 
T Consensus        24 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N~l~-~~~-~l~~l~~L~~L~l~~n~~~~-   98 (199)
T d2omxa2          24 VLGKTNVTDTV-SQTDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLT-DIT-PLKNLTKLVDILMNNNQIAD-   98 (199)
T ss_dssp             HTTCSSTTSEE-CHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCC-
T ss_pred             HhCCCCCCCcc-CHHHhcCCCEEECCCCC-CCCccccccCCCcCcCcccccccc-Ccc-cccCCccccccccccccccc-
Confidence            34444444322 13456777888887776 444566777788888888776543 333 26777788888887776543 


Q ss_pred             ChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcC
Q 036017          143 FPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHL  222 (283)
Q Consensus       143 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~  222 (283)
                      ++. +. .+++|+.++++++.....  ..+..+++|+.|++++|.+.. + +.+..+++++.+++.+|.++.++ .++.+
T Consensus        99 ~~~-l~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~-~l~~l  171 (199)
T d2omxa2          99 ITP-LA-NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK-PLANL  171 (199)
T ss_dssp             CGG-GT-TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGTTC
T ss_pred             ccc-cc-cccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc-cccCC
Confidence            333 33 677788888877654332  235667778888887766542 3 34667777888888888777665 36777


Q ss_pred             CCccEEecccccCCCCCccccCCCccccee
Q 036017          223 EGLKELRMEYCYKLSKLPDNLGSLRSLKRL  252 (283)
Q Consensus       223 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L  252 (283)
                      ++|+.|++++|+ +++++ .+.++++|+.|
T Consensus       172 ~~L~~L~ls~N~-i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         172 TTLERLDISSNK-VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCCEEECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             CCCCEEECCCCC-CCCCc-cccCCCCCCcC
Confidence            888888888764 44443 45566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-15  Score=115.18  Aligned_cols=166  Identities=20%  Similarity=0.224  Sum_probs=136.0

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL  134 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  134 (283)
                      .+..|+.++++++.+..+. .+..+++|+.|++++|. ...++.++.+++|+.|++++|.. ..++ .+..+++|+.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccccccCccccccccccccc-cccc-ccccccccccccc
Confidence            5778999999999998775 37789999999999997 44566788999999999998764 4454 5788999999999


Q ss_pred             cCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc
Q 036017          135 EGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE  214 (283)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~  214 (283)
                      +++.... ++ .+. .+++++.++++++.+.. . .....+++|+++++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus       120 ~~~~~~~-~~-~l~-~l~~l~~l~~~~n~l~~-~-~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         120 EHNGISD-IN-GLV-HLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTSCCCC-CG-GGG-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccc-cc-ccc-ccccccccccccccccc-c-ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence            9987643 44 344 78999999999977543 2 246678999999999987764 43 47889999999999999998


Q ss_pred             cchhhhcCCCccEEeccc
Q 036017          215 LPSSVEHLEGLKELRMEY  232 (283)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~  232 (283)
                      ++ .+..+++|+.|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            86 588999999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-15  Score=117.80  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=121.1

Q ss_pred             eeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccc-h-hhhhccC
Q 036017            5 RLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELL-W-EEKKEAF   80 (283)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~-~-~~l~~~~   80 (283)
                      +.++.++.+++         .+|..+   |.++++|+++++.+..++.. + ++++|+++++++|.+... + ..+.+++
T Consensus        11 ~~i~c~~~~l~---------~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1          11 RVFLCQESKVT---------EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             SEEEEESCSCS---------SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             CEEEEeCCCCC---------CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            45555555544         455443   34899999999999888774 3 899999999999987643 3 3466789


Q ss_pred             CccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCC-CccCE
Q 036017           81 KLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSL-TNLEV  156 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~  156 (283)
                      +++.+.+..+......+  .+..+++|+.+++.++...... ...+..++.++.+....+.+...-+..+. .+ ..++.
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~-~~~~~l~~  157 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVI  157 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccc-ccccccee
Confidence            99999886643343333  4788999999999997654321 12233444555555555444321122222 33 36777


Q ss_pred             EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccch
Q 036017          157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPS  217 (283)
Q Consensus       157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~  217 (283)
                      +++.++.+.. ++.......++.++....+...+.++ ..+.++++|++|++++|.++.+|.
T Consensus       158 L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         158 LWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             EECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             eecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence            8887765443 33333334455555443333333343 345667777777777777666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=4.1e-14  Score=115.34  Aligned_cols=241  Identities=20%  Similarity=0.227  Sum_probs=133.5

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK   81 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~   81 (283)
                      ++|++|++++|.++         .+|..   .. +|+.|++.++.+..++..  .+.|++|++++|.+..++. .+.+.+
T Consensus        58 ~~L~~L~Ls~N~l~---------~lp~~---~~-~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~  121 (353)
T d1jl5a_          58 PHLESLVASCNSLT---------ELPEL---PQ-SLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSF  121 (353)
T ss_dssp             TTCSEEECCSSCCS---------SCCCC---CT-TCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTT
T ss_pred             CCCCEEECCCCCCc---------ccccc---hh-hhhhhhhhhcccchhhhh--ccccccccccccccccccc-hhhhcc
Confidence            67999999988877         45543   34 788888888887776543  2468888888888887764 466788


Q ss_pred             ccEEEccCCCCCCCC-------------------CCCCCCCCCcEEeeeCCCCCCc------------------chhhcc
Q 036017           82 LKSVDLCNSQNLTRM-------------------PDLSETPNLERMYLLNCTNLPF------------------ISSSIE  124 (283)
Q Consensus        82 L~~L~l~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~  124 (283)
                      |+.+++.++......                   ..+..++.++.+.+.++.....                  ......
T Consensus       122 L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  201 (353)
T d1jl5a_         122 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ  201 (353)
T ss_dssp             CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCT
T ss_pred             ceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            888888776532221                   1233445556665554332110                  001122


Q ss_pred             CCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC---------------
Q 036017          125 NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL---------------  189 (283)
Q Consensus       125 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------------  189 (283)
                      .++.++.++++++.... ++.    ...++..+.+..+..... +   .....+....+..+...               
T Consensus       202 ~l~~L~~l~l~~n~~~~-~~~----~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~  272 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGLSELPPNLYYLNAS  272 (353)
T ss_dssp             TCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred             ccccccccccccccccc-ccc----cccccccccccccccccc-c---cccccccccccccccccccccccchhcccccc
Confidence            33444555554443221 111    222333443333322110 0   00112222222211110               


Q ss_pred             -CCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhc
Q 036017          190 -ESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIAD  268 (283)
Q Consensus       190 -~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~  268 (283)
                       ..+......+++|++|++++|.++.+|.   .+++|+.|++++|. ++.+|+.   +++|+.|++++|.++.+|..   
T Consensus       273 ~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~L~~lp~~---  342 (353)
T d1jl5a_         273 SNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNPLREFPDI---  342 (353)
T ss_dssp             SSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCCCC---
T ss_pred             cCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCc-CCccccc---cCCCCEEECcCCcCCCCCcc---
Confidence             0111112235678888888888887774   35678888888765 4455542   45788888888888877753   


Q ss_pred             cCCCCceee
Q 036017          269 LKQVDGLSF  277 (283)
Q Consensus       269 ~~~L~~L~l  277 (283)
                      ..+|+.|.+
T Consensus       343 ~~~L~~L~~  351 (353)
T d1jl5a_         343 PESVEDLRM  351 (353)
T ss_dssp             CTTCCEEEC
T ss_pred             ccccCeeEC
Confidence            235666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=3.6e-15  Score=121.72  Aligned_cols=181  Identities=15%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             CCCCCCcEEeeeCCCCCCc----chhhccCCCCCcEEEecCCCCcCCChhH------------hhcCCCccCEEeccCCc
Q 036017          100 SETPNLERMYLLNCTNLPF----ISSSIENLNNLSMLRLEGCKILGPFPAF------------ISLSLTNLEVLDLAHCK  163 (283)
Q Consensus       100 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~  163 (283)
                      ..+++|+.|++++|.....    +...+..+++|++|++++|.+.......            .....+.|+.+.++++.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555555555443221    2233344555666666555432110000            01134556666666554


Q ss_pred             Ccc----cchhhhcCCCCCCeEeecCCCCCCC-----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEe
Q 036017          164 RLN----RLSASICKLKSLSWLRLYNCSKLES-----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELR  229 (283)
Q Consensus       164 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~  229 (283)
                      +..    .+...+..++++++|++++|.+...     +...+..+++|+.|++++|.++     .+...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            322    1222334455666666666554421     1122345566666666666654     2333445666666666


Q ss_pred             cccccCCCC----CccccC--CCcccceeecCCcccc-----cccHHhh-ccCCCCceeeccC
Q 036017          230 MEYCYKLSK----LPDNLG--SLRSLKRLHTGKSAIS-----QLPSSIA-DLKQVDGLSFYGC  280 (283)
Q Consensus       230 l~~~~~~~~----l~~~~~--~l~~L~~L~l~~~~i~-----~~~~~~~-~~~~L~~L~l~~c  280 (283)
                      +++|.....    +...+.  ..+.|+.|++++|.|+     .+...+. +++.|++|+++++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            666653321    112221  2345666666666665     2333332 4566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-15  Score=128.16  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc-----
Q 036017            3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL-----   71 (283)
Q Consensus         3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~-----   71 (283)
                      +|++|+++.+++++       ..+...+..++ +++.|++++|+++.     ++... .+++|+.|++++|.+..     
T Consensus         3 ~l~~ld~~~~~i~~-------~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSD-------ARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCH-------HHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcCCh-------HHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            45666666555542       12233334445 55666666665421     11111 45556666666555541     


Q ss_pred             chhhhhc-cCCccEEEccCCCCCCC----CC-CCCCCCCCcEEeeeCC
Q 036017           72 LWEEKKE-AFKLKSVDLCNSQNLTR----MP-DLSETPNLERMYLLNC  113 (283)
Q Consensus        72 ~~~~l~~-~~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~  113 (283)
                      +...+.. ..+|+.|++++|...+.    ++ .+..+++|++|++++|
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            1111111 23456666655543222    11 2344555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-15  Score=128.33  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC--CCCcceEEecCCCCccc--
Q 036017            1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL--STDKLVVLNLPCSNVEL--   71 (283)
Q Consensus         1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~--~~~~L~~l~l~~~~~~~--   71 (283)
                      ++++|+|++.+|.++..    ....++..+..+| +|++|++++|.++.     +...+  ...+|+.|++++|.++.  
T Consensus        26 l~~l~~L~L~~~~i~~~----~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEA----RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HTTCSEEEEESSCCCHH----HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             CCCCCEEEeCCCCCCHH----HHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            46889999998876521    1224455567788 89999999888732     22222  34578999999888763  


Q ss_pred             ---chhhhhccCCccEEEccCCC
Q 036017           72 ---LWEEKKEAFKLKSVDLCNSQ   91 (283)
Q Consensus        72 ---~~~~l~~~~~L~~L~l~~~~   91 (283)
                         ++..+..+++|+.|++.+|.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccchhhcccccccccccccc
Confidence               33456678889999988765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1e-13  Score=95.54  Aligned_cols=119  Identities=16%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCC
Q 036017           38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP  117 (283)
Q Consensus        38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  117 (283)
                      |+|+++++.+..++....+++|++|++++|.+.++|..+..+++|+.|++++|. +..++.++.+++|+.+++++|....
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCccCC
Confidence            356666666666654446666666666666666666556666666666666665 3344556666666666666654332


Q ss_pred             c-chhhccCCCCCcEEEecCCCCcC--CChhHhhcCCCccCEE
Q 036017          118 F-ISSSIENLNNLSMLRLEGCKILG--PFPAFISLSLTNLEVL  157 (283)
Q Consensus       118 ~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L  157 (283)
                      . ....+..+++|+.+++++|++..  .++..+...+|+|+.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            1 12345566667777776666542  1223332245555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=100.04  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=24.8

Q ss_pred             CceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCC
Q 036017           36 ELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQ   91 (283)
Q Consensus        36 ~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~   91 (283)
                      ++++|+++++.+..++..+ .+++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc
Confidence            4555555555544444332 3444555555444444432 23334444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.5e-13  Score=101.25  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=56.7

Q ss_pred             eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      +.++.+++.+.++|..+  .++++.|++++|.+...++  .|..+++|+.|+++++......+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            35666666666666543  2456666666665433222  2444555555555554443333334444445555555554


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN  185 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  185 (283)
                      ++....+..+. .+++|+.|++++|.+....+..+..+++|+++++++
T Consensus        89 ~l~~l~~~~F~-~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          89 KIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cccccCHHHHh-CCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            44321111222 444444444444443333333333444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=4.2e-14  Score=115.32  Aligned_cols=232  Identities=17%  Similarity=0.116  Sum_probs=144.4

Q ss_pred             CCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc-----------chhhhhccCCccEEEccC
Q 036017           27 DQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL-----------LWEEKKEAFKLKSVDLCN   89 (283)
Q Consensus        27 ~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~-----------~~~~l~~~~~L~~L~l~~   89 (283)
                      ...+.... .++.|+++++.++.     +.... ..+.|+.++++++....           +...+..+++|+.|++.+
T Consensus        24 ~~~L~~~~-~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCC-CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            33455566 78888888877622     22222 56788888887664331           223345577888888888


Q ss_pred             CCCCCCCC-----CCCCCCCCcEEeeeCCCCCCcc----hh---------hccCCCCCcEEEecCCCCcCCC----hhHh
Q 036017           90 SQNLTRMP-----DLSETPNLERMYLLNCTNLPFI----SS---------SIENLNNLSMLRLEGCKILGPF----PAFI  147 (283)
Q Consensus        90 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~---------~~~~~~~L~~L~l~~~~~~~~~----~~~~  147 (283)
                      |.......     .+..+++|+.|++++|......    ..         .....+.++.+.++++.+....    ...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            76433211     1345678888888877543211    01         1235678888888887654321    2223


Q ss_pred             hcCCCccCEEeccCCcCccc-----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----
Q 036017          148 SLSLTNLEVLDLAHCKRLNR-----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----  213 (283)
Q Consensus       148 ~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----  213 (283)
                      . ..++|+.+++++|.+...     +...+..+++|++|++++|.+...    +...+..+++|++|++++|.++     
T Consensus       183 ~-~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 Q-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             H-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             h-hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3 567888888888765432     233456678888898888776432    3345667888889999888887     


Q ss_pred             ccchhhhc--CCCccEEecccccCCC----CCccccC-CCcccceeecCCcccc
Q 036017          214 ELPSSVEH--LEGLKELRMEYCYKLS----KLPDNLG-SLRSLKRLHTGKSAIS  260 (283)
Q Consensus       214 ~~~~~~~~--~~~L~~L~l~~~~~~~----~l~~~~~-~l~~L~~L~l~~~~i~  260 (283)
                      .+...+..  .+.|++|++++|....    .+...+. +.+.|+.|++++|.+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            23333333  3568899998876432    1223332 4678889999988876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=99.35  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=80.3

Q ss_pred             CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhh-hhccC
Q 036017            2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEE-KKEAF   80 (283)
Q Consensus         2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~   80 (283)
                      .++|+|++++|.++         .++..+..++ +|+.|++++|.+..++....+++|+.|++++|.+..++.. +..++
T Consensus        18 ~~lr~L~L~~n~I~---------~i~~~~~~l~-~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          18 VRDRELDLRGYKIP---------VIENLGATLD-QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             TSCEEEECTTSCCC---------SCCCGGGGTT-CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CcCcEEECCCCCCC---------ccCccccccc-cCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccc
Confidence            47899999999988         4566567788 9999999999999887666899999999999999988754 45689


Q ss_pred             CccEEEccCCCCCCC--CCCCCCCCCCcEEeeeCCC
Q 036017           81 KLKSVDLCNSQNLTR--MPDLSETPNLERMYLLNCT  114 (283)
Q Consensus        81 ~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~  114 (283)
                      +|+.|++++|.+...  +..+..+++|+++++++|.
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCc
Confidence            999999998874321  1234556666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2e-12  Score=88.85  Aligned_cols=116  Identities=22%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             CEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017          155 EVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY  234 (283)
Q Consensus       155 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  234 (283)
                      |.|++++|.+. .++ .+..+++|++|++++|.+. .+|..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            35566665543 222 2555666666666665554 35555666677777777777776665 35667777777777754


Q ss_pred             CCCCCc--cccCCCcccceeecCCcccccc---c-HHhhccCCCCce
Q 036017          235 KLSKLP--DNLGSLRSLKRLHTGKSAISQL---P-SSIADLKQVDGL  275 (283)
Q Consensus       235 ~~~~l~--~~~~~l~~L~~L~l~~~~i~~~---~-~~~~~~~~L~~L  275 (283)
                      ... ++  ..+..+++|+.+++++|.++..   + .....+|+++.+
T Consensus        77 i~~-~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCC-CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            432 22  3456677777777777777632   2 234556777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.5e-12  Score=96.86  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             EEEecCCCCCccCCCCCCCcceEEecCCCCccc-c-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCC
Q 036017           39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL-L-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTN  115 (283)
Q Consensus        39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  115 (283)
                      .++.++.++..+|... .+++++|++++|.+.. + ...+.++++|+.|++.+|......+ .+..+++|++|++++|..
T Consensus        12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            3444444444444332 1344555555555432 1 1223444555555555444333222 344445555555554433


Q ss_pred             CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCc
Q 036017          116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCK  163 (283)
Q Consensus       116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  163 (283)
                      ....+..+.++++|++|++++|.+....+..+. .+++|+++++++|.
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNP  137 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhc-CCcccccccccccc
Confidence            222223344455555555555544332122222 44455555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=5e-14  Score=105.40  Aligned_cols=123  Identities=23%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCC-CCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEE
Q 036017           55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLERMYLLNCTNLPFISSSIENLNNLSMLR  133 (283)
Q Consensus        55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  133 (283)
                      .+++|+.|++++|.+..++ .+..+++|+.|++++|. +..++.+ ..+++|+.|++++|.. ..+ ..+..+++|+.|+
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i-~~l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEEC-CCH-HHHHHHHHSSEEE
T ss_pred             cccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccc-ccc-ccccccccccccc
Confidence            5677777777777777664 36667777777777776 3344432 2345677777777543 333 2356667777888


Q ss_pred             ecCCCCcCCCh--hHhhcCCCccCEEeccCCcCcccch----------hhhcCCCCCCeEee
Q 036017          134 LEGCKILGPFP--AFISLSLTNLEVLDLAHCKRLNRLS----------ASICKLKSLSWLRL  183 (283)
Q Consensus       134 l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~L~l  183 (283)
                      +++|.+.. ++  ..+. .+++|+.|++++|++....+          ..+..+|+|+.|+.
T Consensus       122 L~~N~i~~-~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         122 MSNNKITN-WGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             ESEEECCC-HHHHHHHT-TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccchhcc-cccccccc-CCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            87776543 33  2343 67778888887775432211          12456778888763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=2.9e-12  Score=95.64  Aligned_cols=144  Identities=19%  Similarity=0.186  Sum_probs=108.2

Q ss_pred             CCcEEEecCCC-CcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017          128 NLSMLRLEGCK-ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID  206 (283)
Q Consensus       128 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  206 (283)
                      ..+.+.+.+.. -...++..+. .+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++.....+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhhhhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            34556665431 1234666777 8999999999998754 443 4778999999999998765 4555555667899999


Q ss_pred             ecCCCccccchhhhcCCCccEEecccccCCCCCc--cccCCCcccceeecCCccccccc-----------HHhhccCCCC
Q 036017          207 LRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP--DNLGSLRSLKRLHTGKSAISQLP-----------SSIADLKQVD  273 (283)
Q Consensus       207 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~-----------~~~~~~~~L~  273 (283)
                      +++|.++.++ .+..+++|+.|++++|.. +.++  ..+..+++|+.|++++|.++..+           ..+..+|+|+
T Consensus       100 l~~N~i~~l~-~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         100 ISYNQIASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             CSEEECCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             cccccccccc-cccccccccccccccchh-ccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            9999999774 578889999999999764 4443  45789999999999999886221           1367899999


Q ss_pred             ceee
Q 036017          274 GLSF  277 (283)
Q Consensus       274 ~L~l  277 (283)
                      .||-
T Consensus       178 ~LD~  181 (198)
T d1m9la_         178 KLDG  181 (198)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            9874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.6e-09  Score=77.21  Aligned_cols=86  Identities=17%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             CCCccCEEeccCCc-CcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEE
Q 036017          150 SLTNLEVLDLAHCK-RLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKEL  228 (283)
Q Consensus       150 ~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L  228 (283)
                      .+++|+.|++.+++ +....+..+.++++|+.|++++|.+....+..|..+++|+.|++++|.++.++..+.....|+.|
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccccc
Confidence            44555555554433 22222334555555555555555544433444555556666666666665555544333446666


Q ss_pred             ecccccC
Q 036017          229 RMEYCYK  235 (283)
Q Consensus       229 ~l~~~~~  235 (283)
                      ++++|+.
T Consensus       109 ~L~~Np~  115 (156)
T d2ifga3         109 VLSGNPL  115 (156)
T ss_dssp             ECCSSCC
T ss_pred             ccCCCcc
Confidence            6665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.1e-09  Score=76.60  Aligned_cols=103  Identities=16%  Similarity=0.022  Sum_probs=47.6

Q ss_pred             eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017           60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC  137 (283)
Q Consensus        60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  137 (283)
                      +.++..++.+...+..+..++++++|++.++..+..++  .|..+++|+.|++++|.....-+..+..+++|++|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            33444444444444444445555555554443233332  2444555555555554332222334455555555555555


Q ss_pred             CCcCCChhHhhcCCCccCEEeccCCcC
Q 036017          138 KILGPFPAFISLSLTNLEVLDLAHCKR  164 (283)
Q Consensus       138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~  164 (283)
                      .+.. ++.... ...+|+.|++++|.+
T Consensus        91 ~l~~-l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALES-LSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSC-CCSTTT-CSCCCCEEECCSSCC
T ss_pred             CCcc-cChhhh-ccccccccccCCCcc
Confidence            5432 333333 333455555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=9.8e-07  Score=63.08  Aligned_cols=109  Identities=16%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             CCCccCEEeccCCc-Cccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017          150 SLTNLEVLDLAHCK-RLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL  215 (283)
Q Consensus       150 ~~~~L~~L~l~~~~-~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~  215 (283)
                      ..++|++|++++++ +...    +...+...++|++|++++|.+...    +...+...+.|++|++++|.++     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            56788888887643 3221    233455677788888887766532    2234455677777777777776     23


Q ss_pred             chhhhcCCCccEEecccccCCC-------CCccccCCCcccceeecCCcc
Q 036017          216 PSSVEHLEGLKELRMEYCYKLS-------KLPDNLGSLRSLKRLHTGKSA  258 (283)
Q Consensus       216 ~~~~~~~~~L~~L~l~~~~~~~-------~l~~~~~~l~~L~~L~l~~~~  258 (283)
                      ...+...++|++|++++|....       .+...+...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3345566677777776653221       122333445566666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.5e-07  Score=67.07  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             cCCCCCCeEeecCCCCCCC--CchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCC
Q 036017          173 CKLKSLSWLRLYNCSKLES--FPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLS  237 (283)
Q Consensus       173 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~  237 (283)
                      ..+++|++|++++|.+...  ++..+..+++|+.|++++|.++.++.. ......|+++++.+|+...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4567777777777766542  234455677777777777777755542 2233456677777665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5.1e-07  Score=64.28  Aligned_cols=63  Identities=21%  Similarity=0.144  Sum_probs=31.3

Q ss_pred             hcCCCCcEEeecCCCcccc---chhhhcCCCccEEecccccCCCCCcc-ccCCCcccceeecCCcccc
Q 036017          197 ENMARLEYIDLRLTAIKEL---PSSVEHLEGLKELRMEYCYKLSKLPD-NLGSLRSLKRLHTGKSAIS  260 (283)
Q Consensus       197 ~~~~~L~~l~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~  260 (283)
                      ..+++|++|++++|+++.+   +..+..+++|+.|++++|... .+++ ...+...|+.+++++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            3455666666666665532   233455566666666664332 2221 1122334566666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=4.8e-06  Score=59.34  Aligned_cols=108  Identities=13%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             cCCCCCcEEEecCCC-CcCC----ChhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC---
Q 036017          124 ENLNNLSMLRLEGCK-ILGP----FPAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES---  191 (283)
Q Consensus       124 ~~~~~L~~L~l~~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~---  191 (283)
                      ...+.|++|+++++. +...    +...+. ..++|+.|++++|.+...    +...+...+.|++|++++|.+...   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~-~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHh-hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            455777888887643 3221    111222 556678888877765422    233445567788888877765542   


Q ss_pred             -CchhhhcCCCCcEEeecCCCcc--------ccchhhhcCCCccEEeccc
Q 036017          192 -FPGILENMARLEYIDLRLTAIK--------ELPSSVEHLEGLKELRMEY  232 (283)
Q Consensus       192 -~~~~~~~~~~L~~l~l~~~~l~--------~~~~~~~~~~~L~~L~l~~  232 (283)
                       +...+...++|++|+++++...        .+...+...++|+.|+++.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence             2233445567888888766433        2344455667777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.96  E-value=4.3e-06  Score=59.54  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=42.4

Q ss_pred             CCCccCEEeccCCc-Cccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017          150 SLTNLEVLDLAHCK-RLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL  215 (283)
Q Consensus       150 ~~~~L~~L~l~~~~-~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~  215 (283)
                      ..++|++|+++++. +...    +...+...++|++|++++|.+...    +...+....+++.++++++.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            55677777777633 2211    223344566677777776655432    2223344556666666666554     22


Q ss_pred             chhhhcCCCccEEecc
Q 036017          216 PSSVEHLEGLKELRME  231 (283)
Q Consensus       216 ~~~~~~~~~L~~L~l~  231 (283)
                      ...+...++|+.+++.
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            2334455555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=6.1e-05  Score=53.32  Aligned_cols=109  Identities=14%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             ccCCCCCcEEEecCC-CCcCCC----hhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC--
Q 036017          123 IENLNNLSMLRLEGC-KILGPF----PAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES--  191 (283)
Q Consensus       123 ~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~--  191 (283)
                      ..+.++|++|++++. .+....    ...+. ..++|++|++++|.+...    +...+...++++.+++.+|.....  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345677778877763 232211    11222 567778888887765332    223345567777887777665533  


Q ss_pred             --CchhhhcCCCCcEEeec--CCCcc-----ccchhhhcCCCccEEeccc
Q 036017          192 --FPGILENMARLEYIDLR--LTAIK-----ELPSSVEHLEGLKELRMEY  232 (283)
Q Consensus       192 --~~~~~~~~~~L~~l~l~--~~~l~-----~~~~~~~~~~~L~~L~l~~  232 (283)
                        +...+...++|+.++++  +|.+.     .+...+...+.|+.|++..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence              22344556677765554  44554     3444556677777777654