Citrus Sinensis ID: 036029

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA
cHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccccccccccEEEEEEEEEEcccEEEEccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccEEEccccccccEEcccccccccccccccccccccccccHHHHHHHHHHccccccEEEccccEEEEEEEccEEEEEccHHHHHHHHHHHHHccccEEEEEEEcccccHHHHccc
ccHHHEEEEEEEEccccccEEEEEEEccEEEcccccccccccccccHccEEEEEEEEccccccEEcccccccHHHHHHHHHHHHHccccEEEEEEcEcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHccccHHHHHHHHcHHHHHHHcccccccccccccccccEEcHHHHHHHHHHccccHHHEEEEccccccEEEEEccccccccccccccccccccHHEHHHHHHHHccccccEEEEccccccccEEEcccEEEEcccHHHHHHHHHHHHHHcccEEEEEcHHHcHcccccccc
MASKIIVLVLHICIFSESLPTRAQTLIRagywdsgdefFISDVNSALFTHLMCGfadvnstsyelslspsdekqfsnftdtvkkknpsittllsigggknpnystyssmasnpssrksfiDSSIKIARLYGFqgldlswswantswdnynigILFKEWRAAVALEARNNSSQSQLILTARVayspystigaysIDSIRQYLNWVHVITAeysrpmwtnhtsapaalvfnteygitawtdeglsadklvlglpcygyawtlvkpedngigaaatgpalsdigFVTYKEIKNYIKsygpnvpvmyNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHdwmlsqaa
MASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFsnftdtvkkknpsittllsigggknpnYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAkekklrgyFVWKVAYDHDWMLSQAA
MASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA
****IIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSY*******************************************************FIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWML****
*ASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLS***
MASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTY***********SFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA
*ASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQ**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q95M17472 Acidic mammalian chitinas yes no 0.852 0.648 0.307 2e-36
Q9D7Q1464 Chitotriosidase-1 OS=Mus yes no 0.835 0.646 0.294 8e-35
Q91XA9473 Acidic mammalian chitinas no no 0.852 0.646 0.295 2e-34
Q6RY07473 Acidic mammalian chitinas no no 0.852 0.646 0.295 2e-34
Q13231466 Chitotriosidase-1 OS=Homo yes no 0.849 0.654 0.295 2e-34
Q9BZP6 476 Acidic mammalian chitinas no no 0.949 0.716 0.272 3e-33
Q5RBP6410 Chitinase-3-like protein no no 0.860 0.753 0.292 8e-33
P36222383 Chitinase-3-like protein no no 0.844 0.791 0.284 3e-32
Q9WTV1381 Chitinase-3-like protein no no 0.844 0.795 0.284 1e-31
Q29411383 Chitinase-3-like protein no no 0.860 0.806 0.274 4e-30
>sp|Q95M17|CHIA_BOVIN Acidic mammalian chitinase OS=Bos taurus GN=CHIA PE=1 SV=1 Back     alignment and function desciption
 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 167/332 (50%), Gaps = 26/332 (7%)

Query: 38  FFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGG 97
           F   +++  L THL+  FA + S S   ++  +D   +S+F D +KKKN  +  LL+IGG
Sbjct: 41  FKPDNIDPCLCTHLIYAFAGM-SNSEITTIEWNDVALYSSFND-LKKKNSQLKILLAIGG 98

Query: 98  GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW----ANTSWDNYNIGI 153
             N   + +++M + P +RK+FI S IK    YGF GLD  W +     + S D +   +
Sbjct: 99  -WNFGTAPFTAMVATPENRKTFISSVIKFLHQYGFDGLDFDWEYPGFRGSPSQDKHLFTV 157

Query: 154 LFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEY-- 211
           L +E R A   EA+  +++ +L++TA VA    +    Y I  + QYL+++HV+T ++  
Sbjct: 158 LVQETREAFEQEAKQ-TNKPRLLVTAAVAAGISNIQAGYEIPQLSQYLDFIHVMTYDFHG 216

Query: 212 --------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKP 263
                   + P++   T   +    N EY +  W   G  A+KL++G P YG+ + L   
Sbjct: 217 SWEGYTGENSPLYKYPTDTGSNTYLNVEYAMNYWKKNGAPAEKLIIGFPAYGHNFILRDA 276

Query: 264 EDNGIGAAAT-----GPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIW 318
            +NGIGA  +     GP   + GF  Y EI  ++K         ++ +  + Y   G  W
Sbjct: 277 SNNGIGAPTSGAGPAGPYTREAGFWAYYEICAFLKD---GATEAWDDSQNVPYAYKGTEW 333

Query: 319 FGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
            G+D+V + R+K  + KE    G  VW +  D
Sbjct: 334 VGYDNVNSFRIKAQWLKENNFGGAMVWAIDLD 365
Degrades chitin and chitotriose. May participate in the defense against nematodes, fungi and other pathogens. Plays a role in T-helper cell type 2 (Th2) immune response. Contributes to the response to IL-13 and inflammation in response to IL-13. Stimulates chemokine production by pulmonary epithelial cells. Protects lung epithelial cells against apoptosis and promotes phosphorylation of AKT1. Its function in the inflammatory response and in protecting cells against apoptosis is inhibited by allosamidin, suggesting that the function of this protein depends on carbohydrate binding.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q9D7Q1|CHIT1_MOUSE Chitotriosidase-1 OS=Mus musculus GN=Chit1 PE=1 SV=2 Back     alignment and function description
>sp|Q91XA9|CHIA_MOUSE Acidic mammalian chitinase OS=Mus musculus GN=Chia PE=1 SV=2 Back     alignment and function description
>sp|Q6RY07|CHIA_RAT Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1 Back     alignment and function description
>sp|Q13231|CHIT1_HUMAN Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BZP6|CHIA_HUMAN Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1 Back     alignment and function description
>sp|Q5RBP6|CH3L1_PONAB Chitinase-3-like protein 1 OS=Pongo abelii GN=CHI3L1 PE=2 SV=1 Back     alignment and function description
>sp|P36222|CH3L1_HUMAN Chitinase-3-like protein 1 OS=Homo sapiens GN=CHI3L1 PE=1 SV=2 Back     alignment and function description
>sp|Q9WTV1|CH3L1_RAT Chitinase-3-like protein 1 OS=Rattus norvegicus GN=Chi3l1 PE=2 SV=3 Back     alignment and function description
>sp|Q29411|CH3L1_PIG Chitinase-3-like protein 1 OS=Sus scrofa GN=CHI3L1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
356558668 909 PREDICTED: uncharacterized protein LOC10 0.986 0.389 0.562 1e-102
224142425 763 predicted protein [Populus trichocarpa] 0.991 0.466 0.569 1e-101
359497679359 PREDICTED: chitotriosidase-1-like [Vitis 0.983 0.983 0.546 1e-97
359497026 738 PREDICTED: G-type lectin S-receptor-like 0.983 0.478 0.546 1e-97
359484771 781 PREDICTED: G-type lectin S-receptor-like 0.935 0.430 0.511 2e-91
296088199 1130 unnamed protein product [Vitis vinifera] 0.913 0.290 0.520 9e-89
255565055 721 conserved hypothetical protein [Ricinus 0.933 0.464 0.502 6e-86
224142429375 predicted protein [Populus trichocarpa] 0.991 0.949 0.48 4e-84
255565049371 chitinase, putative [Ricinus communis] g 0.988 0.956 0.452 1e-81
374719233366 chitinase 3 [Populus x canadensis] 0.927 0.909 0.444 7e-77
>gi|356558668|ref|XP_003547625.1| PREDICTED: uncharacterized protein LOC100787480 [Glycine max] Back     alignment and taxonomy information
 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/366 (56%), Positives = 256/366 (69%), Gaps = 12/366 (3%)

Query: 1   MASKI-IVLVL-HICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADV 58
           M S+I I LVL    +  E  P +AQT ++AGYW SG  F +SD+NSAL+THL+C FA++
Sbjct: 1   MVSRITIALVLFEFLLCQEFEPLKAQTWLQAGYWYSGSGFPVSDINSALYTHLICAFAEL 60

Query: 59  NSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKS 118
           NS++YEL +SP DE+ FS+FT TVK+KNPSITTLLSI GG N N +  S M S  SSRK 
Sbjct: 61  NSSTYELYVSPEDEQSFSSFTTTVKQKNPSITTLLSIAGG-NGNDTVLSLMVSKDSSRKY 119

Query: 119 FIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILT 178
           FI SSI+IARLYGFQGLDLSW     S D  N+G LF+EWRAA   EA N+S+Q  LILT
Sbjct: 120 FIQSSIRIARLYGFQGLDLSWVPETIS-DMNNMGRLFEEWRAAAKSEAANDSTQV-LILT 177

Query: 179 ARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV-----FNTEYG 233
           A V + P     +Y ++SI+  LNWVH++T +Y  P   N T+A AAL       NT+ G
Sbjct: 178 AAVHFRPGLDSASYPVESIQNNLNWVHILTYDYHMPQLANFTAAHAALYDPSSSVNTDNG 237

Query: 234 ITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIK 293
           I  W   G++A KLVLGLP YGYAW L  PEDN IGA+ATGPA+   G + YK+IK YI+
Sbjct: 238 IKEWIGSGVTASKLVLGLPFYGYAWNLRNPEDNAIGASATGPAIGKSGAMNYKDIKAYIQ 297

Query: 294 SYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDW 353
            YG +V   YN+TYV+NY S G  W G+DDVE V+MKV+YA+E KL GY VW+V YD +W
Sbjct: 298 RYGGHVK--YNATYVVNYFSNGSTWIGYDDVEVVKMKVSYARENKLLGYAVWQVPYDDNW 355

Query: 354 MLSQAA 359
           +LS AA
Sbjct: 356 VLSSAA 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142425|ref|XP_002324558.1| predicted protein [Populus trichocarpa] gi|222865992|gb|EEF03123.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359497679|ref|XP_003635605.1| PREDICTED: chitotriosidase-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497026|ref|XP_003635401.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484771|ref|XP_003633158.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088199|emb|CBI35714.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565055|ref|XP_002523520.1| conserved hypothetical protein [Ricinus communis] gi|223537227|gb|EEF38859.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224142429|ref|XP_002324560.1| predicted protein [Populus trichocarpa] gi|222865994|gb|EEF03125.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565049|ref|XP_002523517.1| chitinase, putative [Ricinus communis] gi|223537224|gb|EEF38856.1| chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|374719233|gb|AEZ67302.1| chitinase 3 [Populus x canadensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2134025379 ChiC "class V chitinase" [Arab 0.980 0.928 0.426 7.3e-75
TAIR|locus:2134015398 AT4G19800 [Arabidopsis thalian 0.913 0.824 0.418 8.9e-70
TAIR|locus:2134030366 AT4G19820 [Arabidopsis thalian 0.919 0.901 0.415 6.3e-69
TAIR|locus:2133940362 AT4G19750 [Arabidopsis thalian 0.927 0.919 0.404 1.8e-62
TAIR|locus:2133955369 AT4G19760 [Arabidopsis thalian 0.927 0.902 0.405 3.8e-62
TAIR|locus:2134010363 AT4G19720 [Arabidopsis thalian 0.846 0.837 0.412 1.8e-55
TAIR|locus:2134020332 AT4G19730 [Arabidopsis thalian 0.835 0.903 0.401 5.6e-52
TAIR|locus:2133970261 AT4G19770 [Arabidopsis thalian 0.685 0.942 0.406 1e-43
UNIPROTKB|F1MH27472 CHIA "Acidic mammalian chitina 0.841 0.639 0.307 8.9e-38
UNIPROTKB|Q95M17472 CHIA "Acidic mammalian chitina 0.841 0.639 0.307 1.1e-37
TAIR|locus:2134025 ChiC "class V chitinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 156/366 (42%), Positives = 231/366 (63%)

Query:     2 ASKIIVLVLHICIFSESLPTRAQTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNST 61
             ++K+I L++ I  F     + AQT+++A YW    EF ++D++S+LFTHL C FAD+NS 
Sbjct:     3 STKLISLIVSITFFLTLQCSMAQTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQ 62

Query:    62 SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFID 121
             + ++++S +++ +FS FT TV+++NPS+ TLLSIGGG   + + Y+SMASNP+SRKSFID
Sbjct:    63 TNQVTVSSANQPKFSTFTQTVQRRNPSVKTLLSIGGGI-ADKTAYASMASNPTSRKSFID 121

Query:   122 SSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181
             SSI++AR YGF GLDL W + +++ +  N G L +EWR+AV  EA ++S + +L+L A V
Sbjct:   122 SSIRVARSYGFHGLDLDWEYPSSATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAV 180

Query:   182 AYSP--YSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV--FNT----EYG 233
              YS   YS +  Y + ++   L+WV+++  ++  P W+  T  PAAL    N     + G
Sbjct:   181 FYSNNYYSVL--YPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAG 238

Query:   234 ITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIK 293
               +W   GL A K VLG P YGYAW L     +   A  TG A+S  G + Y +I+ +I 
Sbjct:   239 TRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIV 298

Query:   294 SYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDW 353
               G     +YNST V +YC  G  W G+DD +++  KV YAK++ L GYF W V  D + 
Sbjct:   299 DNGATT--VYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNS 356

Query:   354 MLSQAA 359
              LS+AA
Sbjct:   357 GLSRAA 362
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0004568 "chitinase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0006032 "chitin catabolic process" evidence=IDA
GO:0008843 "endochitinase activity" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0035885 "exochitinase activity" evidence=IDA
TAIR|locus:2134015 AT4G19800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134030 AT4G19820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133940 AT4G19750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133955 AT4G19760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134010 AT4G19720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134020 AT4G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133970 AT4G19770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MH27 CHIA "Acidic mammalian chitinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q95M17 CHIA "Acidic mammalian chitinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.14LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00005604001
SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (359 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd02879299 cd02879, GH18_plant_chitinase_class_V, The class V 1e-110
smart00636334 smart00636, Glyco_18, Glyco_18 domain 6e-72
pfam00704325 pfam00704, Glyco_hydro_18, Glycosyl hydrolases fam 1e-67
cd02872362 cd02872, GH18_chitolectin_chitotriosidase, This co 5e-59
cd02873413 cd02873, GH18_IDGF, The IDGF's (imaginal disc grow 1e-29
cd06548322 cd06548, GH18_chitinase, The GH18 (glycosyl hydrol 4e-28
COG3325441 COG3325, ChiA, Chitinase [Carbohydrate transport a 3e-23
cd00598210 cd00598, GH18_chitinase-like, The GH18 (glycosyl h 8e-22
cd06545253 cd06545, GH18_3CO4_chitinase, The Bacteroides thet 4e-10
cd02875358 cd02875, GH18_chitobiase, Chitobiase (also known a 3e-06
cd02874313 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragm 5e-06
COG3858423 COG3858, COG3858, Predicted glycosyl hydrolase [Ge 5e-06
cd02871312 cd02871, GH18_chitinase_D-like, GH18 domain of Chi 0.001
>gnl|CDD|119358 cd02879, GH18_plant_chitinase_class_V, The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes Back     alignment and domain information 
 Score =  322 bits (828), Expect = e-110
 Identities = 144/343 (41%), Positives = 204/343 (59%), Gaps = 54/343 (15%)

Query: 24  QTLIRAGYWDSGDEFF-ISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTV 82
            T+++ GYW +  E F  S+++S+LFTHL   FAD++ ++YE+ +SPSDE +FS FT+TV
Sbjct: 1   STIVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETV 60

Query: 83  KKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA 142
           K+KNPS+ TLLSIGGG   + S +++MAS+P++RK+FI+SSIK+AR YGF GLDL W + 
Sbjct: 61  KRKNPSVKTLLSIGGG-GSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFP 119

Query: 143 NTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA----YSIDSIR 198
           ++  +  N G L +EWRAAV  EAR +S +  L+LTA V +SP   +      Y I++I 
Sbjct: 120 SSQVEMENFGKLLEEWRAAVKDEAR-SSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAIN 178

Query: 199 QYLNWVHVITAEYSRPMWTNHTSAPAAL-----VFNTEYGITAWTDEGLSADKLVLGLPC 253
           + L+WV+V+  +Y     +N T   AAL       +T+YGI +W   G+ A KLVLGLP 
Sbjct: 179 KNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPL 238

Query: 254 YGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS 313
           YG AWTL                                          Y++T V +Y  
Sbjct: 239 YGRAWTL------------------------------------------YDTTTVSSYVY 256

Query: 314 IGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLS 356
            G  W G+DDV+++ +KV YAK+K L GYF W V YD +  LS
Sbjct: 257 AGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNWLS 299

The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. Length = 299
>gnl|CDD|214753 smart00636, Glyco_18, Glyco_18 domain Back     alignment and domain information
>gnl|CDD|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18 Back     alignment and domain information
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases Back     alignment and domain information
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster Back     alignment and domain information
>gnl|CDD|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites Back     alignment and domain information
>gnl|CDD|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|119349 cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods Back     alignment and domain information
>gnl|CDD|119362 cd06545, GH18_3CO4_chitinase, The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas Back     alignment and domain information
>gnl|CDD|119354 cd02875, GH18_chitobiase, Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes Back     alignment and domain information
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination Back     alignment and domain information
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
cd02879299 GH18_plant_chitinase_class_V The class V plant chi 100.0
cd02872362 GH18_chitolectin_chitotriosidase This conserved do 100.0
cd02873413 GH18_IDGF The IDGF's (imaginal disc growth factors 100.0
smart00636334 Glyco_18 Glycosyl hydrolase family 18. 100.0
KOG2806432 consensus Chitinase [Carbohydrate transport and me 100.0
cd02878345 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin 100.0
COG3325441 ChiA Chitinase [Carbohydrate transport and metabol 100.0
cd06548322 GH18_chitinase The GH18 (glycosyl hydrolases, fami 100.0
PF00704343 Glyco_hydro_18: Glycosyl hydrolases family 18; Int 100.0
cd02876318 GH18_SI-CLP Stabilin-1 interacting chitinase-like 100.0
cd02875358 GH18_chitobiase Chitobiase (also known as di-N-ace 100.0
cd02874313 GH18_CFLE_spore_hydrolase Cortical fragment-lytic 100.0
cd06545253 GH18_3CO4_chitinase The Bacteroides thetaiotaomicr 100.0
cd06549298 GH18_trifunctional GH18 domain of an uncharacteriz 100.0
cd00598210 GH18_chitinase-like The GH18 (glycosyl hydrolase, 100.0
cd06546256 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 100.0
COG3858423 Predicted glycosyl hydrolase [General function pre 100.0
cd06544253 GH18_narbonin Narbonin is a plant 2S protein from 100.0
cd02871312 GH18_chitinase_D-like GH18 domain of Chitinase D ( 99.98
KOG2091392 consensus Predicted member of glycosyl hydrolase f 99.94
cd06542255 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases 99.93
cd02877280 GH18_hevamine_XipI_class_III This conserved domain 99.91
cd06543294 GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch 99.86
COG3469332 Chitinase [Carbohydrate transport and metabolism] 99.81
KOG4701 568 consensus Chitinase [Cell wall/membrane/envelope b 99.53
cd06547339 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG 98.52
PF03644311 Glyco_hydro_85: Glycosyl hydrolase family 85 ; Int 98.03
PF02638311 DUF187: Glycosyl hydrolase like GH101; InterPro: I 97.96
PF13200316 DUF4015: Putative glycosyl hydrolase domain 97.73
PF11340181 DUF3142: Protein of unknown function (DUF3142); In 97.61
COG3867403 Arabinogalactan endo-1,4-beta-galactosidase [Carbo 95.02
KOG2331 526 consensus Predicted glycosylhydrolase [General fun 94.37
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 89.38
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 88.05
TIGR02104605 pulA_typeI pullulanase, type I. Pullulan is an unu 87.69
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 87.3
TIGR02402542 trehalose_TreZ malto-oligosyltrehalose trehalohydr 87.17
TIGR02103 898 pullul_strch alpha-1,6-glucosidases, pullulanase-t 86.98
PRK12313633 glycogen branching enzyme; Provisional 86.61
cd04735353 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN 85.61
PF14871132 GHL6: Hypothetical glycosyl hydrolase 6 85.42
PRK12568730 glycogen branching enzyme; Provisional 85.23
TIGR01370315 cysRS possible cysteinyl-tRNA synthetase, Methanoc 85.09
TIGR01515613 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 84.84
cd02932336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 84.67
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 83.82
PLN02960 897 alpha-amylase 82.81
PRK10785598 maltodextrin glucosidase; Provisional 80.97
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes Back     alignment and domain information 
Probab=100.00  E-value=6.7e-66  Score=475.09  Aligned_cols=286  Identities=50%  Similarity=0.908  Sum_probs=257.4

Q ss_pred             cEEEEEecCCC-CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc
Q 036029           26 LIRAGYWDSGD-EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS  104 (359)
Q Consensus        26 ~~~~~y~~~~~-~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~  104 (359)
                      -+++|||++|. .+.+++||.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+++|||||+. +++
T Consensus         3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s~   81 (299)
T cd02879           3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DSS   81 (299)
T ss_pred             eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCc
Confidence            36899999976 8999999999999999999999998888877766667788888889999999999999999986 567


Q ss_pred             ccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecC
Q 036029          105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYS  184 (359)
Q Consensus       105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~  184 (359)
                      .|+.++++++.|++|++++++++++|||||||||||+|..++|+++|+.||++||++|+...+ ++++.+++||+++|+.
T Consensus        82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~-~~~~~~~~ls~av~~~  160 (299)
T cd02879          82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEAR-SSGRPPLLLTAAVYFS  160 (299)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhh-ccCCCcEEEEeecccc
Confidence            999999999999999999999999999999999999998778999999999999999987543 3444468999999876


Q ss_pred             CCc----cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCccc-----ccHHHHHHHHHHCCCCCCceeeecccce
Q 036029          185 PYS----TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV-----FNTEYGITAWTDEGLSADKLVLGLPCYG  255 (359)
Q Consensus       185 ~~~----~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~-----~~~~~~~~~~~~~g~~~~Kl~lGlp~yG  255 (359)
                      +..    ....|++++|.++||+|+||+||++++|.+..+++++||+     .+++.+++.|++.|+|++||+||+||||
T Consensus       161 ~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YG  240 (299)
T cd02879         161 PILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYG  240 (299)
T ss_pred             hhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccc
Confidence            654    3446899999999999999999999999776788999987     4789999999999999999999999999


Q ss_pred             eeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHH
Q 036029          256 YAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAK  335 (359)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~  335 (359)
                      |.|++                                          ||+.+.++|.+.+++||+|||++|++.|++|++
T Consensus       241 r~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~  278 (299)
T cd02879         241 RAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK  278 (299)
T ss_pred             ccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH
Confidence            99952                                          677778999999999999999999999999999


Q ss_pred             HCCCcEEEEEEccCCCchhh
Q 036029          336 EKKLRGYFVWKVAYDHDWML  355 (359)
Q Consensus       336 ~~gl~Gv~iW~l~~Dd~~~l  355 (359)
                      ++||||+|+|++++||...|
T Consensus       279 ~~~lgGv~~W~l~~Dd~~~~  298 (299)
T cd02879         279 QKGLLGYFAWAVGYDDNNWL  298 (299)
T ss_pred             hCCCCeEEEEEeecCCcccc
Confidence            99999999999999997665

The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases Back     alignment and domain information
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster Back     alignment and domain information
>smart00636 Glyco_18 Glycosyl hydrolase family 18 Back     alignment and domain information
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit Back     alignment and domain information
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites Back     alignment and domain information
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome Back     alignment and domain information
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes Back     alignment and domain information
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination Back     alignment and domain information
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas Back     alignment and domain information
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain Back     alignment and domain information
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods Back     alignment and domain information
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L Back     alignment and domain information
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD) Back     alignment and domain information
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins Back     alignment and domain information
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain Back     alignment and domain information
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain Back     alignment and domain information
>COG3469 Chitinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins Back     alignment and domain information
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function Back     alignment and domain information
>PF13200 DUF4015: Putative glycosyl hydrolase domain Back     alignment and domain information
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function Back     alignment and domain information
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only] Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>TIGR02104 pulA_typeI pullulanase, type I Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase Back     alignment and domain information
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type Back     alignment and domain information
>PRK12313 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 Back     alignment and domain information
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6 Back     alignment and domain information
>PRK12568 glycogen branching enzyme; Provisional Back     alignment and domain information
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type Back     alignment and domain information
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>PLN02960 alpha-amylase Back     alignment and domain information
>PRK10785 maltodextrin glucosidase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3aqu_A356 Crystal Structure Of A Class V Chitinase From Arabi 3e-75
3alf_A353 Crystal Structure Of Class V Chitinase From Nicotia 7e-71
3alg_A353 Crystal Structure Of Class V Chitinase (E115q Mutan 8e-71
1guv_A366 Structure Of Human Chitotriosidase Length = 366 7e-36
1hkk_A364 High Resoultion Crystal Structure Of Human Chitinas 9e-36
1hki_A365 Crystal Structure Of Human Chitinase In Complex Wit 9e-36
1lg1_A365 Crystal Structure Of Human Chitotriosidase In Compl 1e-35
3fxy_A395 Acidic Mammalian Chinase, Catalytic Domain Length = 1e-35
1waw_A445 Specificity And Affinity Of Natural Product Cyclope 2e-35
2ybt_A381 Crystal Structure Of Human Acidic Chitinase In Comp 2e-35
1hjv_A362 Crystal Structure Of Hcgp-39 In Complex With Chitin 3e-33
4ay1_A365 Human Ykl-39 Is A Pseudo-Chitinase With Retained Ch 9e-30
1syt_A361 Crystal Structure Of Signalling Protein From Goat S 2e-29
1tfv_A361 Crystal Structure Of A Buffalo Signaling Glycoprote 3e-29
1ljy_A361 Crystal Structure Of A Novel Regulatory 40 Kda Mamm 3e-29
1zbv_A361 Crystal Structure Of The Goat Signalling Protein (S 4e-29
1sr0_A361 Crystal Structure Of Signalling Protein From Sheep( 4e-29
1xhg_A361 Crystal Structure Of A 40 Kda Signalling Protein Fr 4e-29
2pi6_A361 Crystal Structure Of The Sheep Signalling Glycoprot 6e-29
1e9l_A377 The Crystal Structure Of Novel Mammalian Lectin Ym1 1e-28
1owq_A361 Crystal Structure Of A 40 Kda Signalling Protein (S 3e-28
2esc_A361 Crystal Structure Of A 40 Kda Protective Signalling 3e-28
1itx_A419 Catalytic Domain Of Chitinase A1 From Bacillus Circ 4e-17
1w9p_A433 Specificity And Affinity Of Natural Product Cyclope 8e-17
1wno_A395 Crystal Structure Of A Native Chitinase From Asperg 1e-16
3g6l_A406 The Crystal Structure Of A Chitinase Crchi1 From Th 2e-15
1jnd_A420 Crystal Structure Of Imaginal Disc Growth Factor-2 1e-14
1ll6_A392 Structure Of The D169n Mutant Of C. Immitis Chitina 2e-14
1d2k_A392 C. Immitis Chitinase 1 At 2.2 Angstroms Resolution 2e-14
1ll7_A392 Structure Of The E171q Mutant Of C. Immitis Chitina 2e-14
1ur9_A499 Interactions Of A Family 18 Chitinase With The Desi 1e-11
1ogb_A499 Chitinase B From Serratia Marcescens Mutant D142n L 1e-11
1e6z_A498 Chitinase B From Serratia Marcescens Wildtype In Co 2e-11
1h0g_A499 Complex Of A Chitinase With The Natural Product Cyc 2e-11
1e15_A499 Chitinase B From Serratia Marcescens Length = 499 2e-11
1e6n_B499 Chitinase B From Serratia Marcescens Inactive Mutan 2e-11
1goi_A499 Crystal Structure Of The D140n Mutant Of Chitinase 7e-11
3qok_A420 Crystal Structure Of Putative Chitinase Ii From Kle 1e-09
3ars_A584 Crystal Structure Analysis Of Chitinase A From Vibr 1e-08
1rd6_A563 Crystal Structure Of S. Marcescens Chitinase A Muta 4e-08
2wly_A548 Chitinase A From Serratia Marcescens Atcc990 In Com 4e-08
1eib_A540 Crystal Structure Of Chitinase A Mutant D313a Compl 4e-08
1ctn_A540 Crystal Structure Of A Bacterial Chitinase At 2.3 A 4e-08
2wk2_A540 Chitinase A From Serratia Marcescens Atcc990 In Com 5e-08
1ffr_A540 Crystal Structure Of Chitinase A Mutant Y390f Compl 5e-08
1ehn_A540 Crystal Structure Of Chitinase A Mutant E315q Compl 5e-08
1edq_A540 Crystal Structure Of Chitinase A From S. Marcescens 5e-08
1k9t_A540 Chitinase A Complexed With Tetra-N-Acetylchitotrios 6e-08
1nh6_A540 Structure Of S. Marcescens Chitinase A, E315l, Comp 1e-07
3b8s_A584 Crystal Structure Of Wild-Type Chitinase A From Vib 2e-07
3b9a_A584 Crystal Structure Of Vibrio Harveyi Chitinase A Com 3e-07
1kfw_A435 Structure Of Catalytic Domain Of Psychrophilic Chit 9e-07
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/344 (43%), Positives = 219/344 (63%), Gaps = 14/344 (4%)
Query: 24  QTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVK 83
           QT+++A YW    EF ++D++S+LFTHL C FAD+NS + ++++S +++ +FS FT TV+
Sbjct: 2   QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 84  KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143
           ++NPS+ TLLSIGGG   + + Y+SMASNP+SRKSFIDSSI++AR YGF GLDL W + +
Sbjct: 62  RRNPSVKTLLSIGGGI-ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 144 TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP--YSTIGAYSIDSIRQYL 201
           ++ +  N G L +EWR+AV  EA ++S + +L+L A V YS   YS +  Y + ++   L
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVL--YPVSAVASSL 177
Query: 202 NWVHVITAEYSRPMWTNHTSAPAALVFNT------EYGITAWTDEGLSADKLVLGLPCYG 255
           +WV+++  ++  P W+  T  PAAL   +      + G  +W   GL A K VLG P YG
Sbjct: 178 DWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYG 237
Query: 256 YAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
           YAW L     +   A  TG A+S  G + Y +I+ +I   G     +YNST V +YC  G
Sbjct: 238 YAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGAT--TVYNSTVVGDYCYAG 295
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
             W G+DD +++  KV YAK++ L GYF W V  D +  LS+AA
Sbjct: 296 TNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAA 339
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum Length = 353 Back     alignment and structure
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 Length = 353 Back     alignment and structure
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase Length = 366 Back     alignment and structure
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In Complex With Allosamidin Length = 364 Back     alignment and structure
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With Glucoallosamidin B Length = 365 Back     alignment and structure
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With Chitobiose Length = 365 Back     alignment and structure
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain Length = 395 Back     alignment and structure
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product Cyclopentapeptide Inhibitor Argadin Against Human Chitinase Length = 445 Back     alignment and structure
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex With Bisdionin C Length = 381 Back     alignment and structure
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer Length = 362 Back     alignment and structure
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained Chitooligosaccharide Binding Properties Length = 365 Back     alignment and structure
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40 In The Presense Of N,n',n''-triacetyl-chitotriose At 2.6a Resolution Length = 361 Back     alignment and structure
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein (Spb-40) Secreted During Involution Length = 361 Back     alignment and structure
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary Gland Protein (Mgp-40) Secreted During Involution Length = 361 Back     alignment and structure
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40) Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a Resolution Length = 361 Back     alignment and structure
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40) At 3.0a Resolution Using Crystal Grown In The Presence Of Polysaccharides Length = 361 Back     alignment and structure
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From Porcine (spp-40) At 2.89a Resolution Length = 361 Back     alignment and structure
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein (Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a Resolution Reveals Specific Binding Characteristics Of Sps-40 Length = 361 Back     alignment and structure
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1 Suggests A Saccharide Binding Site Length = 377 Back     alignment and structure
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40) Secreted During Involution Length = 361 Back     alignment and structure
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling Protein From Bovine (Spc-40) At 2.1 A Resolution Length = 361 Back     alignment and structure
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans Wl-12 Length = 419 Back     alignment and structure
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product Cyclopentapeptide Inhibitors Against Aspergillus Fumigatus, Human And Bacterial Chitinasefra Length = 433 Back     alignment and structure
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus Fumigatus Yj- 407 Length = 395 Back     alignment and structure
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The Nematophagous Fungus Clonostachys Rosea Length = 406 Back     alignment and structure
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2 Length = 420 Back     alignment and structure
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1 Length = 392 Back     alignment and structure
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution Length = 392 Back     alignment and structure
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1 Length = 392 Back     alignment and structure
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed Inhibitor Hm508, And Its Degradation Product, Chitobiono-Delta-Lactone Length = 499 Back     alignment and structure
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n Length = 499 Back     alignment and structure
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate Length = 498 Back     alignment and structure
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product Cyclopentapeptide Argadin From Clonostachys Length = 499 Back     alignment and structure
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens Length = 499 Back     alignment and structure
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q In Complex With N-Acetylglucosamine-Pentamer Length = 499 Back     alignment and structure
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From Serratia Marcescens At 1.45 A Resolution Length = 499 Back     alignment and structure
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella Pneumoniae Length = 420 Back     alignment and structure
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio Harveyi With Novel Inhibitors - Apo Structure Of Mutant W275g Length = 584 Back     alignment and structure
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a Length = 563 Back     alignment and structure
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With Chitotrio-Thiazoline. Length = 548 Back     alignment and structure
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed With Octa-N- Acetylchitooctaose (Nag)8 Length = 540 Back     alignment and structure
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3 Angstroms Resolution Length = 540 Back     alignment and structure
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With Chitotrio-Thiazoline Dithioamide Length = 540 Back     alignment and structure
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed With Hexa-n- Acetylchitohexaose (nag)6 Length = 540 Back     alignment and structure
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed With Octa-N- Acetylchitooctaose (Nag)8 Length = 540 Back     alignment and structure
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At 1.55 Angstroms Length = 540 Back     alignment and structure
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose Length = 540 Back     alignment and structure
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex With Hexasaccharide Length = 540 Back     alignment and structure
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio Harveyi Length = 584 Back     alignment and structure
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed With Hexasaccharide Length = 584 Back     alignment and structure
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B From Arthrobacter Tad20 Length = 435 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3aqu_A356 AT4G19810; stress response, TIM barrel, hydrolase, 1e-104
3alf_A353 Chitinase, class V; hydrolase; 1.20A {Nicotiana ta 1e-102
4ay1_A365 Chitinase-3-like protein 2; chilectin, lectin, chi 1e-82
1vf8_A377 YM1, secretory protein; chitinase, CHI-lectin, str 4e-81
3fy1_A395 Amcase, TSA1902, acidic mammalian chitinase; struc 1e-80
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 4e-78
2pi6_A361 Chitinase-3-like protein 1; complex, signaling pro 8e-76
3qok_A420 Putative chitinase II; structural genomics, PSI-bi 3e-58
3g6m_A406 Chitinase, crchi1; inhibitor, caffeine, glycosidas 3e-58
1w9p_A433 Chitinase; peptide inhibitors, argifin, argadin, g 4e-58
1ll7_A392 Chitinase 1; beta-alpha barrel, hydrolase; 2.00A { 2e-57
1jnd_A420 Imaginal DISC growth factor-2; IDGF, chitinase, in 8e-55
1itx_A419 Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) 3e-52
3fnd_A312 Chitinase; TIM-barrel, structural genomics, PSI-2, 4e-52
1goi_A499 Chitinase B; chitin degradation, hydrolase, glycos 2e-50
1edq_A540 Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1 9e-49
1kfw_A435 Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrob 7e-47
3oa5_A574 CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yers 6e-46
3arx_A584 Chitinase A; TIM barrel, inhibitor complex, glycos 9e-41
3cz8_A319 Putative sporulation-specific glycosylase YDHD; st 1e-37
3sim_A275 Protein, family 18 chitinase; family 18 plant chit 2e-34
3bxw_B393 Chitinase domain-containing protein 1; TIM barrel, 3e-32
3n12_A333 Chitinase A, chinctu2; zinc atoms, complex, hydrol 5e-22
1edt_A271 Endo-beta-N-acetylglucosaminidase H, endo H; hydro 6e-15
2y8v_A290 CHIC, class III chitinase, putative; afchic, hydro 1e-14
1nar_A290 Narbonin; plant SEED protein; 1.80A {Vicia narbone 3e-12
3ebv_A302 Chinitase A; chitinase A, CHIA, glycosidase, struc 5e-12
3ian_A321 Chitinase; structural genomics, hydrolase, glycosi 1e-11
2ebn_A289 Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl 2e-09
3poh_A451 Endo-beta-N-acetylglucosaminidase F1; TIM barrel, 3e-05
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET: FLC; 2.01A {Arabidopsis thaliana} Length = 356 Back     alignment and structure
 Score =  310 bits (796), Expect = e-104
 Identities = 147/342 (42%), Positives = 215/342 (62%), Gaps = 10/342 (2%)

Query: 24  QTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVK 83
           QT+++A YW    EF ++D++S+LFTHL C FAD+NS + ++++S +++ +FS FT TV+
Sbjct: 2   QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61

Query: 84  KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143
           ++NPS+ TLLSIGGG   + + Y+SMASNP+SRKSFIDSSI++AR YGF GLDL W + +
Sbjct: 62  RRNPSVKTLLSIGGG-IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120

Query: 144 TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
           ++ +  N G L +EWR+AV  EA  +S + +L+L A V YS       Y + ++   L+W
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEAS-SSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDW 179

Query: 204 VHVITAEYSRPMWTNHTSAPAAL------VFNTEYGITAWTDEGLSADKLVLGLPCYGYA 257
           V+++  ++  P W+  T  PAAL        + + G  +W   GL A K VLG P YGYA
Sbjct: 180 VNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYA 239

Query: 258 WTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
           W L     +   A  TG A+S  G + Y +I+ +I   G     +YNST V +YC  G  
Sbjct: 240 WRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGAT--TVYNSTVVGDYCYAGTN 297

Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
           W G+DD +++  KV YAK++ L GYF W V  D +  LS+AA
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAA 339
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB: 3alg_A* Length = 353 Back     alignment and structure
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens} Length = 365 Back     alignment and structure
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity, functional versatility, immune system; 1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A Length = 377 Back     alignment and structure
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A* Length = 395 Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445 Back     alignment and structure
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ... Length = 361 Back     alignment and structure
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycosyl hydrolases family 18; 2.60A {Klebsiella pneumoniae subsp} Length = 420 Back     alignment and structure
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria ochroleuca} PDB: 3g6l_A* Length = 406 Back     alignment and structure
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase, hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5 d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A* 2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A* 1wno_A* Length = 433 Back     alignment and structure
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A Length = 392 Back     alignment and structure
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep heparin, hormone-growth factor complex; HET: NAG BMA MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1 PDB: 1jne_A* Length = 420 Back     alignment and structure
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1 Length = 419 Back     alignment and structure
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A Length = 312 Back     alignment and structure
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1 PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A* 1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A* 1ogb_A 1ogg_A* 1e6z_A* 1ur9_A* Length = 499 Back     alignment and structure
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A* 2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A* Length = 540 Back     alignment and structure
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1 Length = 435 Back     alignment and structure
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A Length = 574 Back     alignment and structure
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase, hydro hydrolase inhibitor complex; HET: POY; 1.16A {Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A* 3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A* 3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A* 3as3_A* Length = 584 Back     alignment and structure
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp} Length = 319 Back     alignment and structure
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus} Length = 275 Back     alignment and structure
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens} Length = 393 Back     alignment and structure
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* Length = 333 Back     alignment and structure
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A Length = 271 Back     alignment and structure
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus} Length = 290 Back     alignment and structure
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5 Length = 290 Back     alignment and structure
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} Length = 302 Back     alignment and structure
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} Length = 321 Back     alignment and structure
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 Length = 289 Back     alignment and structure
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3alf_A353 Chitinase, class V; hydrolase; 1.20A {Nicotiana ta 100.0
3aqu_A356 AT4G19810; stress response, TIM barrel, hydrolase, 100.0
4ay1_A365 Chitinase-3-like protein 2; chilectin, lectin, chi 100.0
3fy1_A395 Amcase, TSA1902, acidic mammalian chitinase; struc 100.0
1vf8_A377 YM1, secretory protein; chitinase, CHI-lectin, str 100.0
2pi6_A361 Chitinase-3-like protein 1; complex, signaling pro 100.0
1wb0_A445 Chitinase 1, chitotriosidase 1; cyclopentapeptide 100.0
1itx_A419 Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) 100.0
3qok_A420 Putative chitinase II; structural genomics, PSI-bi 100.0
3g6m_A406 Chitinase, crchi1; inhibitor, caffeine, glycosidas 100.0
1goi_A499 Chitinase B; chitin degradation, hydrolase, glycos 100.0
1kfw_A435 Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrob 100.0
1ll7_A392 Chitinase 1; beta-alpha barrel, hydrolase; 2.00A { 100.0
1edq_A540 Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1 100.0
1jnd_A420 Imaginal DISC growth factor-2; IDGF, chitinase, in 100.0
1w9p_A433 Chitinase; peptide inhibitors, argifin, argadin, g 100.0
3arx_A584 Chitinase A; TIM barrel, inhibitor complex, glycos 100.0
3oa5_A574 CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yers 100.0
3cz8_A319 Putative sporulation-specific glycosylase YDHD; st 100.0
3bxw_B393 Chitinase domain-containing protein 1; TIM barrel, 100.0
3fnd_A312 Chitinase; TIM-barrel, structural genomics, PSI-2, 100.0
1nar_A290 Narbonin; plant SEED protein; 1.80A {Vicia narbone 100.0
3n12_A333 Chitinase A, chinctu2; zinc atoms, complex, hydrol 100.0
3sim_A275 Protein, family 18 chitinase; family 18 plant chit 100.0
4axn_A328 Chitinase C1; hydrolase; 1.68A {Serratia marcescen 100.0
2y8v_A290 CHIC, class III chitinase, putative; afchic, hydro 100.0
3ebv_A302 Chinitase A; chitinase A, CHIA, glycosidase, struc 100.0
3ian_A321 Chitinase; structural genomics, hydrolase, glycosi 100.0
4ac1_X283 Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, g 100.0
2hvm_A273 Hevamine; hydrolase, chitinase/lysozyme; 1.80A {He 99.97
2gsj_A271 Protein PPL-2; mimosoideae, chimerolectin, endochi 99.97
1edt_A271 Endo-beta-N-acetylglucosaminidase H, endo H; hydro 99.97
2uy2_A294 Endochitinase; carbohydrate metabolism, polysaccha 99.97
1cnv_A299 Concanavalin B; plant chitinase, chitin binding pr 99.96
2xtk_A310 CHIA1, class III chitinase CHIA1; hydrolase, GH18; 99.95
1eok_A290 Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b 99.94
2ebn_A289 Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl 99.94
1ta3_A274 XIP-1, xylanase inhibitor protein I; beta alpha ba 99.93
3mu7_A273 XAIP-II, xylanase and alpha-amylase inhibitor prot 99.9
3poh_A451 Endo-beta-N-acetylglucosaminidase F1; TIM barrel, 99.85
2dsk_A311 Chitinase; catalytic domain, active domain, crysta 99.81
2w91_A 653 Endo-beta-N-acetylglucosaminidase D; hydrolase, N- 97.78
2vtf_A 626 Endo-beta-N-acetylglucosaminidase; hydrolase, fami 97.69
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 93.87
1j0h_A588 Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 87.88
3k1d_A722 1,4-alpha-glucan-branching enzyme; mycobacterium t 87.6
1wzl_A585 Alpha-amylase II; pullulan, GH-13, alpha-amylase f 85.39
2dh2_A424 4F2 cell-surface antigen heavy chain; TIM-barrel, 84.96
2wnw_A447 Activated by transcription factor SSRB; hydrolase, 84.95
3k30_A 690 Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi 83.16
3gr7_A340 NADPH dehydrogenase; flavin, FMN, beta-alpha-barre 82.76
3vmn_A 643 Dextranase; TIM barrel, immunoglobrin fold, greek- 81.54
3zr5_A 656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 81.53
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB: 3alg_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-73  Score=539.14  Aligned_cols=331  Identities=43%  Similarity=0.799  Sum_probs=301.4

Q ss_pred             CcEEEEEecCCCCcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc
Q 036029           25 TLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS  104 (359)
Q Consensus        25 ~~~~~~y~~~~~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~  104 (359)
                      +++++|||-....+.+++|+.++||||+|+|+.++++++.+...+.+...+..+++.+|+++|++|+++|||||+. ++.
T Consensus         2 ~~~~~gY~~~~~~~~~~~i~~~~~THi~yaF~~i~~~~~~v~~~~~~~~~~~~~~~~lk~~~~~lkvllsiGG~~~-~~~   80 (353)
T 3alf_A            2 QNVKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKNPSVKTFLSIAGGRA-NST   80 (353)
T ss_dssp             CCEEEEEEEGGGCCCGGGCCGGGCSEEEEEEEEEETTTTEEECCHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS-CHH
T ss_pred             CceEEEEEecCCCCCHhHCCcccCCEEEEEEEEeeCCCCEEEeCCccHHHHHHHHHHHHhhCCCCeEEEEECCCCC-Cch
Confidence            5789999955678899999999999999999999999888887776667788888889999999999999999985 477


Q ss_pred             ccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecC
Q 036029          105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYS  184 (359)
Q Consensus       105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~  184 (359)
                      .|+.++++++.|++|++++++++++|+|||||||||+|..++|+++|+.||++||++|+..++ .+++.+++||+++|+.
T Consensus        81 ~f~~~~~~~~~r~~fi~siv~~~~~~~fDGiDiDwE~p~~~~d~~n~~~ll~eLr~~l~~~~~-~~~~~~~~Ls~a~~~~  159 (353)
T 3alf_A           81 AYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAADMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNS  159 (353)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHTCSEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHH-HHCSCCCEEEEEEESS
T ss_pred             hHHHHhcCHHHHHHHHHHHHHHHHHcCCCeEEEEeeecCChhHHHHHHHHHHHHHHHHHHhhh-hcCCCceEEEEecccC
Confidence            899999999999999999999999999999999999997678999999999999999987653 3344458999999977


Q ss_pred             CCccccccCHhHHhccccEEEeecccccCC-CCCCCCCCCCccc-----ccHHHHHHHHHHCCCCCCceeeecccceeee
Q 036029          185 PYSTIGAYSIDSIRQYLNWVHVITAEYSRP-MWTNHTSAPAALV-----FNTEYGITAWTDEGLSADKLVLGLPCYGYAW  258 (359)
Q Consensus       185 ~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~-~~~~~~~~~spl~-----~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~  258 (359)
                      +......|++++|.+++|+||||+||+|++ |.+..++|+|||+     .+++.+++.|++.|+|++||+||+|+|||.|
T Consensus       160 ~~~~~~~~d~~~l~~~vD~invMtYD~~g~~w~~~~~g~~a~l~~~~~~~~~~~~v~~~~~~gvp~~KlvlGip~YGr~~  239 (353)
T 3alf_A          160 PRVNGLNYPVESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAW  239 (353)
T ss_dssp             SEETTEECCHHHHHHHCSEEEEECCCSSCTTTSTTBCCCSSCSCCTTTCCSHHHHHHHHHHTTCCGGGEEEEEESEEEEE
T ss_pred             chhhhcCCCHHHHhhhccEEEEEEeeccCCCCCCCCCCCCCcCcCCCCCccHHHHHHHHHHcCCChHHEEEEeCCceeee
Confidence            655445699999999999999999999998 8657899999997     4899999999999999999999999999999


Q ss_pred             eecCCCCCCCCcccCCC---CCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHH
Q 036029          259 TLVKPEDNGIGAAATGP---ALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAK  335 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~---~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~  335 (359)
                      +++++.++++++|+.|+   ++.+.|.++|.|||+++...|  ++..||+++++||+|.+++||+|||++|++.|++|++
T Consensus       240 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~y~ei~~~~~~~g--~~~~~D~~~~~~y~y~~~~~v~ydd~~Si~~K~~~~~  317 (353)
T 3alf_A          240 RLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESR--ATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVK  317 (353)
T ss_dssp             EESCTTCCSTTCBEEEECTTSCTTTCEEEHHHHHHHHHHHT--CEEEEETTTTEEEEEETTEEEEECCHHHHHHHHHHHH
T ss_pred             eccCCcCCCCCCCCCCCCCCCCCCCCeEcHHHHHHHHhhCC--CeEEEccccceEEEEeCCEEEEcCCHHHHHHHHHHHH
Confidence            99999999999998876   556779999999999998888  9999999999999999999999999999999999999


Q ss_pred             HCCCcEEEEEEccCCCchhhhhcC
Q 036029          336 EKKLRGYFVWKVAYDHDWMLSQAA  359 (359)
Q Consensus       336 ~~gl~Gv~iW~l~~Dd~~~l~~a~  359 (359)
                      ++||||+|+|++++||+++|++|+
T Consensus       318 ~~gLgGv~~W~l~~Dd~~~ll~a~  341 (353)
T 3alf_A          318 GRGLLGYFAWHVAGDQNWGLSRTA  341 (353)
T ss_dssp             HTTCSEEEEECGGGSSTTHHHHHH
T ss_pred             hCCCCEEEEEeccCCCCchHHHHH
Confidence            999999999999999999999984
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET: FLC; 2.01A {Arabidopsis thaliana} Back     alignment and structure
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens} Back     alignment and structure
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A* Back     alignment and structure
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity, functional versatility, immune system; 1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A Back     alignment and structure
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ... Back     alignment and structure
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Back     alignment and structure
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1 Back     alignment and structure
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycosyl hydrolases family 18; 2.60A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria ochroleuca} PDB: 3g6l_A* Back     alignment and structure
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1 PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A* 1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A* 1ogb_A 1ogg_A* 1e6z_A* 1ur9_A* Back     alignment and structure
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1 Back     alignment and structure
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A Back     alignment and structure
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A* 2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A* Back     alignment and structure
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep heparin, hormone-growth factor complex; HET: NAG BMA MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1 PDB: 1jne_A* Back     alignment and structure
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase, hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5 d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A* 2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A* 1wno_A* Back     alignment and structure
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase, hydro hydrolase inhibitor complex; HET: POY; 1.16A {Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A* 3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A* 3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A* 3as3_A* Back     alignment and structure
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A Back     alignment and structure
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp} Back     alignment and structure
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens} Back     alignment and structure
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A Back     alignment and structure
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5 Back     alignment and structure
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* Back     alignment and structure
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus} Back     alignment and structure
>4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} Back     alignment and structure
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus} Back     alignment and structure
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} Back     alignment and structure
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} Back     alignment and structure
>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina} Back     alignment and structure
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis} SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A* 1kqy_A* 1kqz_A* Back     alignment and structure
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl hydrolase family 18, equilibrium sedimentation, X-RAY; 1.73A {Parkia platycephala} Back     alignment and structure
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A Back     alignment and structure
>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation, glycopr chitin-binding, chitin degradation, CAZY, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A* 2uy4_A* 2uy5_A* Back     alignment and structure
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5 Back     alignment and structure
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A {Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A* Back     alignment and structure
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A* Back     alignment and structure
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 Back     alignment and structure
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Triticum aestivum} SCOP: c.1.8.5 PDB: 1om0_A* 1te1_A* Back     alignment and structure
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} SCOP: c.1.8.0 PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A* 3d5h_A* Back     alignment and structure
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A Back     alignment and structure
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A* Back     alignment and structure
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Back     alignment and structure
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Back     alignment and structure
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Back     alignment and structure
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Back     alignment and structure
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Back     alignment and structure
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Back     alignment and structure
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Back     alignment and structure
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1goia2356 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic 4e-39
d1w9pa1333 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergil 2e-32
d1ll7a1330 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus ( 5e-32
d1vf8a1302 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin 2e-31
d1vf8a1302 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin 2e-04
d1wb0a1297 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Huma 3e-31
d1wb0a1297 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Huma 2e-05
d2pi6a1292 c.1.8.5 (A:1-239,A:308-361) Signal processing prot 3e-30
d2pi6a1292 c.1.8.5 (A:1-239,A:308-361) Signal processing prot 3e-05
d1jnda1327 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth f 5e-28
d1edqa2358 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalyt 2e-27
d1itxa1347 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillu 3e-22
d1itxa1347 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillu 4e-07
d1kfwa1374 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitina 1e-21
d1nara_289 c.1.8.5 (A:) Seed storage protein {Vicia narbonens 1e-19
d2ebna_285 c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Fl 1e-16
d1edta_265 c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {St 2e-15
d2hvma_273 c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para 9e-14
d1ta3a_274 c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I { 8e-11
d1vf8a270 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mo 1e-08
d1wb0a268 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo 3e-06
d2pi6a268 d.26.3.1 (A:240-307) Signal processing protein (SP 4e-05
d1cnva_283 c.1.8.5 (A:) Seed storage protein {Jack bean (Cana 6e-05
d1itxa272 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circul 1e-04
d1edqa373 d.26.3.1 (A:444-516) Chitinase A {Serratia marcesc 9e-04
d1eoka_282 c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Fl 0.001
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} Length = 356 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Chitinase B, catalytic domain
species: Serratia marcescens [TaxId: 615]

 Score =  140 bits (353), Expect = 4e-39
 Identities = 63/333 (18%), Positives = 129/333 (38%), Gaps = 49/333 (14%)

Query: 31  YWDSGDEFFISDVNSAL---FTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKK 84
              S   F +S++  A     TH+   F D+NS    +++ + + +  +   N    +K 
Sbjct: 22  TDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKA 81

Query: 85  KNPSITTLLSIGG-----GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSW 139
            NPS+  + SIGG         +++ Y +    P+SR  F  S ++I + YGF G+++ W
Sbjct: 82  HNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDW 141

Query: 140 SWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQ--LILTARVAYSPYSTIGAYSIDSI 197
            +   + +        +E R  +  +   +  Q+    +  A    + + +     +  I
Sbjct: 142 EY-PQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQI 200

Query: 198 RQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYA 257
              L++++++T + + P W   T+  AAL          + D         L     G++
Sbjct: 201 VAPLDYINLMTYDLAGP-WEKVTNHQAAL----------FGDAAGPTFYNALREANLGWS 249

Query: 258 WTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
           W  +        +     A           ++ ++   G     + ++  VM        
Sbjct: 250 WEELTRAFPSPFSLTVDAA-----------VQQHLMMEG-----VPSAKIVM-------- 285

Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
              FDD E+ + K  Y K+++L G   W +  D
Sbjct: 286 GVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQD 318
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]} Length = 333 Back     information, alignment and structure
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]} Length = 330 Back     information, alignment and structure
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 302 Back     information, alignment and structure
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 302 Back     information, alignment and structure
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 Back     information, alignment and structure
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 Back     information, alignment and structure
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Length = 292 Back     information, alignment and structure
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Length = 292 Back     information, alignment and structure
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 327 Back     information, alignment and structure
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} Length = 358 Back     information, alignment and structure
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Length = 347 Back     information, alignment and structure
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Length = 347 Back     information, alignment and structure
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} Length = 374 Back     information, alignment and structure
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis, Narbonin [TaxId: 3912]} Length = 289 Back     information, alignment and structure
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} Length = 285 Back     information, alignment and structure
>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} Length = 265 Back     information, alignment and structure
>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]} Length = 273 Back     information, alignment and structure
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 274 Back     information, alignment and structure
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70 Back     information, alignment and structure
>d1wb0a2 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2pi6a2 d.26.3.1 (A:240-307) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Length = 68 Back     information, alignment and structure
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]} Length = 283 Back     information, alignment and structure
>d1itxa2 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Length = 72 Back     information, alignment and structure
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens [TaxId: 615]} Length = 73 Back     information, alignment and structure
>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1itxa1347 Chitinase A1 {Bacillus circulans [TaxId: 1397]} 100.0
d1kfwa1374 Psychrophilic chitinase B {Arthrobacter sp., tad20 100.0
d2pi6a1292 Signal processing protein (SPC-40, MGP-40) {Sheep 100.0
d1wb0a1297 Chitotriosidase {Human (Homo sapiens) [TaxId: 9606 100.0
d1w9pa1333 Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]} 100.0
d1edqa2358 Chitinase A, catalytic domain {Serratia marcescens 100.0
d1vf8a1302 Chitinase-like lectin ym1, saccharide binding doma 100.0
d1ll7a1330 Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 100.0
d1jnda1327 Imaginal disc growth factor-2 {Fruit fly (Drosophi 100.0
d1goia2356 Chitinase B, catalytic domain {Serratia marcescens 100.0
d1nara_289 Seed storage protein {Vicia narbonensis, Narbonin 100.0
d2hvma_273 Hevamine A (chitinase/lysozyme) {Para rubber tree 99.96
d2ebna_285 Endo-beta-N-acetylglucosaminidase {Flavobacterium 99.95
d1edta_265 Endo-beta-N-acetylglucosaminidase {Streptomyces pl 99.95
d1ta3a_274 Xylanase inhibitor protein I, XIP-I {Wheat (Tritic 99.93
d1cnva_283 Seed storage protein {Jack bean (Canavalia ensifor 99.93
d1eoka_282 Endo-beta-N-acetylglucosaminidase {Flavobacterium 99.81
d1vf8a270 Chitinase-like lectin ym1 {Mouse (Mus musculus) [T 99.44
d1wb0a268 Chitotriosidase {Human (Homo sapiens) [TaxId: 9606 99.3
d2pi6a268 Signal processing protein (SPC-40, MGP-40) {Sheep 99.23
d1itxa272 Chitinase A1 {Bacillus circulans [TaxId: 1397]} 99.04
d1edqa373 Chitinase A {Serratia marcescens [TaxId: 615]} 98.96
d1kfwa261 Psychrophilic chitinase B {Arthrobacter sp., tad20 98.76
d1jnda292 Imaginal disc growth factor-2 {Fruit fly (Drosophi 98.7
d1ll7a262 Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 98.29
d1w9pa262 Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]} 98.29
d1goia388 Chitinase B {Serratia marcescens [TaxId: 615]} 98.22
d2bhua3420 Glycosyltrehalose trehalohydrolase, central domain 91.49
d1foba_334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 91.1
d1h3ga3422 Cyclomaltodextrinase, central domain {Flavobacteri 88.86
d1j0ha3382 Neopullulanase, central domain {Bacillus stearothe 88.77
d2nt0a2354 Glucosylceramidase, catalytic domain {Human (Homo 85.79
d1wzaa2409 Bacterial alpha-amylase {Halothermothrix orenii [T 85.2
d1ht6a2347 Plant alpha-amylase {Barley (Hordeum vulgare), AMY 82.93
d2aama1285 Hypothetical protein TM1410 {Thermotoga maritima [ 81.62
d1djqa1340 Trimethylamine dehydrogenase, N-terminal domain {M 81.47
d1eh9a3400 Glycosyltrehalose trehalohydrolase, central domain 80.36
d1gcya2357 G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase 80.16
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Chitinase A1
species: Bacillus circulans [TaxId: 1397]

Probab=100.00  E-value=2.6e-56  Score=417.33  Aligned_cols=265  Identities=26%  Similarity=0.467  Sum_probs=226.0

Q ss_pred             ccCCCCCcEEEEEecCC----CCcCCCCCCCCCCcEEEEEeEEEeCCCcEEec---------------------------
Q 036029           19 LPTRAQTLIRAGYWDSG----DEFFISDVNSALFTHLMCGFADVNSTSYELSL---------------------------   67 (359)
Q Consensus        19 ~~~~~~~~~~~~y~~~~----~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~---------------------------   67 (359)
                      .+.++...+++|||++|    +.+.+++||.++||||+|+|+.++.++.....                           
T Consensus         5 ~~~a~~~~rvv~Yy~~W~~y~~~~~~~~i~~~~~THi~yaF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (347)
T d1itxa1           5 TAEAADSYKIVGYYPSWAAYGRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQNEKSQTINVPNGTI   84 (347)
T ss_dssp             CCCGGGGCEEEEEEEGGGGTTTCCCGGGCCGGGCSEEEEEEEEECBTTEEEECCTTSSCCEEEECBCTTSCBCCCCTTCE
T ss_pred             CCCCCCCCEEEEEECcccccCCCCChhHCCHhhCCeEEEeeEeecCCcccccCcccccccccccccccccccccCCCceE
Confidence            34556678999999985    46789999999999999999999876532211                           


Q ss_pred             --Ccc----------------chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHH
Q 036029           68 --SPS----------------DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARL  129 (359)
Q Consensus        68 --~~~----------------~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~  129 (359)
                        .++                ....+..+. .+|+++|++||++|||||+.  ++.|+.+++++++|++||++++++|++
T Consensus        85 ~~~d~~~d~~~~~~~~~~~~~~~g~~~~~~-~lK~~~p~lKvllSiGGw~~--s~~Fs~~~~~~~~R~~Fi~siv~~l~~  161 (347)
T d1itxa1          85 VLGDPWIDTGKTFAGDTWDQPIAGNINQLN-KLKQTNPNLKTIISVGGWTW--SNRFSDVAATAATREVFANSAVDFLRK  161 (347)
T ss_dssp             EESSHHHHHTSCCTTCCSSSSCCHHHHHHH-HHHHHSTTCEEEEEEECSSS--CTTHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhhhccccccccccccchhHHHHHH-HHHHhCCCCEEEEEEcCCCC--CcchhhhhcCHHHHHHHHHHHHHHHHH
Confidence              111                123466775 69999999999999999996  889999999999999999999999999


Q ss_pred             cCcceEEEEeeecC---------CCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhcc
Q 036029          130 YGFQGLDLSWSWAN---------TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQY  200 (359)
Q Consensus       130 ~~~DGidiD~E~~~---------~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~  200 (359)
                      |+|||||||||+|.         .++++++|+.||++||++|+..++ .+++ +++|++++|+.+. ....|+++++.++
T Consensus       162 ~~fDGIDiDWE~P~~~g~~~~~~~~~d~~nf~~ll~eLr~~l~~~~~-~~~~-~~~ls~a~~~~~~-~~~~~d~~~i~~~  238 (347)
T d1itxa1         162 YNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGA-VDGK-KYLLTIASGASAT-YAANTELAKIAAI  238 (347)
T ss_dssp             HTCSEEEEECSCSSSCSCTTSCCCTTHHHHHHHHHHHHHHHHHHHHH-HHTS-CCEEEEEECCSHH-HHHTSCHHHHHHH
T ss_pred             hCCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhh-hcCC-ccceeecccchhh-hhhhccHHHHhhc
Confidence            99999999999985         346889999999999999987653 1122 3789999986543 3345899999999


Q ss_pred             ccEEEeecccccCCCCCCCCCCCCccc---------------ccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCC
Q 036029          201 LNWVHVITAEYSRPMWTNHTSAPAALV---------------FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPED  265 (359)
Q Consensus       201 vD~i~vm~yd~~~~~~~~~~~~~spl~---------------~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~  265 (359)
                      ||+|+||+||+|++| ++.++++|||+               .+++.+++.|++.|+|++||+||||             
T Consensus       239 vD~vnvMtYD~~g~w-~~~~g~~apL~~~~~~~~~~~~~~~~~~v~~~v~~~~~~G~p~~KlvlGip-------------  304 (347)
T d1itxa1         239 VDWINIMTYDFNGAW-QKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVP-------------  304 (347)
T ss_dssp             SSEEEECCCCSSCTT-SSBCCCSSCSSCCHHHHHTTCTTTTTCSHHHHHHHHHHHTCCGGGEEEEEE-------------
T ss_pred             cCEEEeeeccccCCC-CCcccccCCCcCCcccccccCCCCCceeHHHHHHHHHHCCCCHHHeEEEec-------------
Confidence            999999999999997 45789999987               3799999999999999999999985             


Q ss_pred             CCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHHHCCCcEEEEE
Q 036029          266 NGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVW  345 (359)
Q Consensus       266 ~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW  345 (359)
                                                                             |||++|++.|++|++++||||+|+|
T Consensus       305 -------------------------------------------------------fd~~~si~~K~~y~k~~~LgGvmiW  329 (347)
T d1itxa1         305 -------------------------------------------------------FDDAESVGYKTAYIKSKGLGGAMFW  329 (347)
T ss_dssp             -------------------------------------------------------SCCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             -------------------------------------------------------cCCHHHHHHHHHHHHhCCCCEEEEE
Confidence                                                                   6899999999999999999999999


Q ss_pred             EccCCCchhhhhc
Q 036029          346 KVAYDHDWMLSQA  358 (359)
Q Consensus       346 ~l~~Dd~~~l~~a  358 (359)
                      ++++||+++|++|
T Consensus       330 ~l~~Dd~~~L~~a  342 (347)
T d1itxa1         330 ELSGDRNKTLQNK  342 (347)
T ss_dssp             CGGGCTTCHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999987
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} Back     information, alignment and structure
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]} Back     information, alignment and structure
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis, Narbonin [TaxId: 3912]} Back     information, alignment and structure
>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]} Back     information, alignment and structure
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} Back     information, alignment and structure
>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} Back     information, alignment and structure
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]} Back     information, alignment and structure
>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} Back     information, alignment and structure
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wb0a2 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pi6a2 d.26.3.1 (A:240-307) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1itxa2 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Back     information, alignment and structure
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1kfwa2 d.26.3.1 (A:328-388) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} Back     information, alignment and structure
>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ll7a2 d.26.3.1 (A:293-354) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]} Back     information, alignment and structure
>d1w9pa2 d.26.3.1 (A:299-360) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Back     information, alignment and structure
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Back     information, alignment and structure
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Back     information, alignment and structure
>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Back     information, alignment and structure
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure