Citrus Sinensis ID: 036036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccccccccccccccccccccccccccEEcccccEEEEEEEEEEEEccccccccccccEEEEEEcccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccccccccccccccEEEccccccEEccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEcc
Coil and Loop (DISEMBL)
qaairdddewyffSEHNKKYAnsarterttraghwkvtgkdrqiWDKNRKEVIGVKKNLVFyegrgsnavkTSWVIHEYhsnnasayQAFSYFTFVFS
Flexible Loop (DISEMBL)
qaairdddewyffsehnkkyansarterttraghwkvtgkdrqiwdknrkevigvkknlvfyegrgsNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Low Complexity Region (SEG)
QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Disordered region (IsUnstruct)
********EWYFFSEHN************TRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVF*
Disordered Region (DISOPRED)
***IRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Disordered Region (DISEMBL)
QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Disordered Region (DISPRO)
*****DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNNASAYQAFSYFTFVFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.816	0.239	0.45	3e-18
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.928	0.293	0.439	9e-18
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.867	0.226	0.458	1e-17
Q84K00	567	NAC domain-containing pro	no	no	0.724	0.125	0.520	2e-17
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.785	0.184	0.480	6e-17
Q8H4S4	425	NAC transcription factor	no	no	0.846	0.195	0.452	9e-17
Q84TE6	324	NAC domain-containing pro	no	no	0.704	0.212	0.492	1e-16
A2YMR0	425	NAC transcription factor	N/A	no	0.846	0.195	0.452	1e-16
Q9FIW5	337	Putative NAC domain-conta	no	no	0.806	0.234	0.455	1e-16
Q7GCL7	489	NAC domain-containing pro	no	no	0.734	0.147	0.5	1e-16

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 54/80 (67%)

Query: 9   EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
           EWYF+S  ++KY    RT R T AG+WK TGKD++++     +++G+KK LVFY+GR   
Sbjct: 77  EWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPR 136

Query: 69  AVKTSWVIHEYHSNNASAYQ 88
            +KT WV+HEY   N  +++
Sbjct: 137 GLKTKWVMHEYRLENDHSHR 156

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 55/91 (60%)

Query: 1   QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLV 60
           + A   + EWYFF+  ++KY    RT R T AG+WK TGKDR+I     K ++G+KK LV
Sbjct: 67  EKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLV 126

Query: 61  FYEGRGSNAVKTSWVIHEYHSNNASAYQAFS 91
           FY+GR     K+ WV+HEY  +   +Y   S
Sbjct: 127 FYKGRAPKGEKSCWVMHEYRLDGKFSYHYIS 157

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 53/85 (62%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           + EWYFFS  ++KY    RT R T AG+WK TGKDR+I+      ++G+KK LVFY+GR 
Sbjct: 70  EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRA 129

Query: 67  SNAVKTSWVIHEYHSNNASAYQAFS 91
               K++WV+HEY      +Y   S
Sbjct: 130 PKGEKSNWVMHEYRLEGKFSYHFIS 154

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 2/73 (2%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           D EWYFFS  +KKY+N ++T R T  G+WK TGKDR+I  +N   V+G+KK LV+++GR 
Sbjct: 64  DLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREI--RNGSRVVGMKKTLVYHKGRA 121

Query: 67  SNAVKTSWVIHEY 79
               +T+WV+HEY
Sbjct: 122 PRGERTNWVMHEY 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query: 3   AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
           A+  + EWYF+   ++KY NS+R  R T AG WK TG DR I+     + IG+KK+LVFY
Sbjct: 65  AMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFY 124

Query: 63  EGRGSNAVKTSWVIHEY 79
           +GR +  VKT W++HE+
Sbjct: 125 KGRAAKGVKTDWMMHEF 141

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDK-NRKEVIGVKKNLVFYEGR 65
           + EWYFFS  ++KY N AR  R   +G+WK TG D+ I    + +E +GVKK LVFY G+
Sbjct: 82  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGK 141

Query: 66  GSNAVKTSWVIHEYHSNNASAYQA 89
               VKT+W++HEY   + S+  A
Sbjct: 142 PPKGVKTNWIMHEYRLTDTSSSAA 165

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 9   EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
           +WYF+S+ ++KYA   RT R T  G+WK TGKDR I  K +  ++G++K LVFY+GR   
Sbjct: 75  DWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGK--LVGMRKTLVFYQGRAPR 132

Query: 69  AVKTSWVIHEY 79
             KT WV+HE+
Sbjct: 133 GRKTDWVMHEF 143

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIW-DKNRKEVIGVKKNLVFYEGR 65
           + EWYFFS  ++KY N AR  R   +G+WK TG D+ I    + +E +GVKK LVFY G+
Sbjct: 82  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGK 141

Query: 66  GSNAVKTSWVIHEYHSNNASAYQA 89
               VKT+W++HEY   + S+  A
Sbjct: 142 PPKGVKTNWIMHEYRLTDTSSSAA 165

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9FIW5|NAC94_ARATH Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=4 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 49/79 (62%)

Query: 1   QAAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLV 60
           + A   + EWYF+   ++KY NS R  R T  G WK TG DR I+  +    IG+KK+LV
Sbjct: 67  KLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLDSTRCIGLKKSLV 126

Query: 61  FYEGRGSNAVKTSWVIHEY 79
           FY GR +  VKT W++HE+
Sbjct: 127 FYRGRAAKGVKTDWMMHEF 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 2/74 (2%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           D++W+FF+  ++KY N +R+ R T AG+WK TGKDR I  K  K+ IG KK LVF+EGR 
Sbjct: 64  DNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI--KMGKQTIGTKKTLVFHEGRP 121

Query: 67  SNAVKTSWVIHEYH 80
               +T W++HEY+
Sbjct: 122 PTGRRTEWIMHEYY 135

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
147843196	1537	hypothetical protein VITISV_005910 [Viti	0.816	0.052	0.6	3e-22
296089033	218	unnamed protein product [Vitis vinifera]	0.816	0.366	0.6	2e-21
296089035	994	unnamed protein product [Vitis vinifera]	0.785	0.077	0.582	2e-21
359489481	997	PREDICTED: uncharacterized protein LOC10	0.806	0.079	0.582	1e-20
224130708	245	NAC domain protein, IPR003441 [Populus t	0.816	0.326	0.560	2e-18
224145748	245	NAC domain protein, IPR003441 [Populus t	0.816	0.326	0.560	2e-18
125564636	366	hypothetical protein OsI_32319 [Oryza sa	0.744	0.199	0.534	2e-18
413924124	298	putative NAC domain transcription factor	0.734	0.241	0.555	3e-18
449529515	152	PREDICTED: NAC domain-containing protein	0.887	0.572	0.468	3e-18
449435712	196	PREDICTED: NAC transcription factor ONAC	0.755	0.377	0.567	3e-18

>gi|147843196|emb|CAN80540.1| hypothetical protein VITISV_005910 [Vitis vinifera]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/80 (60%), Positives = 60/80 (75%)

Query: 6    DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
            DD EW+FFS  + KY+N +R+ R T AG+WK TG+DR I+    KEVIG KK LVFY GR
Sbjct: 1204 DDPEWFFFSLLDYKYSNGSRSNRATNAGYWKPTGQDRDIFSGTNKEVIGTKKTLVFYRGR 1263

Query: 66   GSNAVKTSWVIHEYHSNNAS 85
            G  A++T+WVIHEYH+N AS
Sbjct: 1264 GRGAIRTNWVIHEYHTNIAS 1283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089033|emb|CBI38736.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 60/80 (75%)

Query: 6   DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
           DD EW+FFS  + KY+N +R+ R T AG+WK TG+DR I+    KEVIG KK LVFY GR
Sbjct: 63  DDPEWFFFSLLDYKYSNGSRSNRATNAGYWKPTGQDRGIFSGTNKEVIGTKKTLVFYRGR 122

Query: 66  GSNAVKTSWVIHEYHSNNAS 85
           G  A++T+WVIHEYH+N AS
Sbjct: 123 GRGAIRTNWVIHEYHTNIAS 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089035|emb|CBI38738.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 58/79 (73%)

Query: 6   DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
           DD EW+FFS  + KY+N +R+ R T AG+WK TG+DR I+    KEVIG KK LVFY GR
Sbjct: 736 DDPEWFFFSLLDYKYSNGSRSNRATSAGYWKPTGQDRDIFSGTNKEVIGTKKTLVFYRGR 795

Query: 66  GSNAVKTSWVIHEYHSNNA 84
           G  A++T+WVIHEY +N A
Sbjct: 796 GRGAIRTNWVIHEYRANIA 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489481|ref|XP_002268822.2| PREDICTED: uncharacterized protein LOC100262652 [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 58/79 (73%)

Query: 6   DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
           DD EW+FFS  + KY+N +R+ R T AG+WK TG+DR I+    KEVIG KK LVFY GR
Sbjct: 68  DDPEWFFFSLLDYKYSNGSRSNRATSAGYWKPTGQDRDIFSGTNKEVIGTKKTLVFYRGR 127

Query: 66  GSNAVKTSWVIHEYHSNNA 84
           G  A++T+WVIHEY +N A
Sbjct: 128 GRGAIRTNWVIHEYRANIA 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130708|ref|XP_002320908.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222861681|gb|EEE99223.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 2   AAIRD--DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNL 59
           +AI++  D E YFF   + KYANS R  RTT+AG+WKVTGKDR +  K  KE I  KK L
Sbjct: 56  SAIKEPNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKDRIVKTKTTKEHIATKKTL 115

Query: 60  VFYEGRGSNAVKTSWVIHEYHS 81
           VFY+GR  N +KT+W++HEYH 
Sbjct: 116 VFYKGRVPNGIKTNWIMHEYHP 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145748|ref|XP_002336259.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222833043|gb|EEE71520.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 2   AAIRD--DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNL 59
           +AI++  D E YFF   + KYANS R  RTT+AG+WKVTGKDR +  K  KE I  KK L
Sbjct: 56  SAIKEPNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKDRIVKTKTTKEHIATKKTL 115

Query: 60  VFYEGRGSNAVKTSWVIHEYHS 81
           VFY+GR  N +KT+W++HEYH 
Sbjct: 116 VFYKGRVPNGIKTNWIMHEYHP 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125564636|gb|EAZ10016.1| hypothetical protein OsI_32319 [Oryza sativa Indica Group]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           D EWYFF   ++KY N  RT R TRAG+WK TGKDR++  ++    IG+KK LV+Y GR 
Sbjct: 171 DPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVVHQHGGRAIGMKKTLVYYRGRA 230

Query: 67  SNAVKTSWVIHEY 79
              V+T WV+HEY
Sbjct: 231 PQGVRTDWVMHEY 243

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413924124|gb|AFW64056.1| putative NAC domain transcription factor superfamily protein [Zea mays]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query: 8   DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGS 67
           ++WYFFS  ++KYA   R  R TR+G+WK TGKDR I D     V+G++K LVFY GR  
Sbjct: 66  NDWYFFSFRDRKYATGQRANRATRSGYWKATGKDRAIHDPRSAIVVGMRKTLVFYRGRAP 125

Query: 68  NAVKTSWVIHEY 79
           N VKTSWV+HE+
Sbjct: 126 NGVKTSWVMHEF 137

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529515|ref|XP_004171745.1| PREDICTED: NAC domain-containing protein 74-like [Cucumis sativus]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           D EWYFF   ++KY N  RT R TRAG+WK TGKDR++  +NR   IG+KK LV+Y GR 
Sbjct: 61  DPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQNR--AIGMKKTLVYYRGRA 118

Query: 67  SNAVKTSWVIHEYH-----SNNASAYQAFSYFTF 95
              ++T WV+HEY        ++S  Q F +F  
Sbjct: 119 PQGIRTDWVMHEYRLDDKDCEDSSGIQVFFFFPL 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435712|ref|XP_004135638.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 53/74 (71%)

Query: 7   DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
           D +W+FFS  + KY+N  R+ R T+ G+WK TGKDRQI  +  K +IG KK LVFY GR 
Sbjct: 68  DHQWFFFSAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMARGTKVLIGTKKTLVFYSGRV 127

Query: 67  SNAVKTSWVIHEYH 80
            N +KT+WVIHEYH
Sbjct: 128 PNGIKTNWVIHEYH 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.816	0.253	0.487	5.7e-20
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.857	0.279	0.471	7.2e-20
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.867	0.274	0.458	8.3e-19
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.714	0.185	0.527	1e-18
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.724	0.288	0.520	1.1e-18
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.816	0.239	0.45	1.4e-18
TAIR|locus:2121323	352	NAC074 "NAC domain containing	0.724	0.201	0.492	1.5e-18
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.714	0.146	0.527	1.6e-18
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.867	0.226	0.458	1.7e-18
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.724	0.223	0.534	1.7e-18

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 39/80 (48%), Positives = 54/80 (67%)

Query:     9 EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
             EWYFFS  ++KY    RT R T  G+WK TGKD++I++    E++G+KK LVFY GR   
Sbjct:    71 EWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPR 130

Query:    69 AVKTSWVIHEYHSNNASAYQ 88
               KT WV+HEY  ++ S+Y+
Sbjct:   131 GEKTCWVMHEYRLHSKSSYR 150

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 42/89 (47%), Positives = 63/89 (70%)

Query:     6 DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
             +D EWYF+S  +KKY N +RT R TRAG+WK TGKDR +  K  K  +G+KK LV+Y GR
Sbjct:    60 NDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMK--MGMKKTLVYYRGR 117

Query:    66 GSNAVKTSWVIHEY---HSNNASAYQAFS 91
               + ++T+WV+HEY   H+ ++S  ++++
Sbjct:   118 APHGLRTNWVMHEYRLTHAPSSSLKESYA 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 39/85 (45%), Positives = 53/85 (62%)

Query:     7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
             + EWYFF+  ++KY    RT R T AG+WK TGKDR+I     K ++G+KK LVFY+GR 
Sbjct:    73 EKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRA 132

Query:    67 SNAVKTSWVIHEYHSNNASAYQAFS 91
                 K+ WV+HEY  +   +Y   S
Sbjct:   133 PKGEKSCWVMHEYRLDGKFSYHYIS 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 38/72 (52%), Positives = 52/72 (72%)

Query:     8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGS 67
             +EWYFFS  +KKY    RT R T AG WK TG+D+ ++DK++  +IG++K LVFY+GR  
Sbjct:    67 NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSK--LIGMRKTLVFYKGRAP 124

Query:    68 NAVKTSWVIHEY 79
             N  KT W++HEY
Sbjct:   125 NGQKTDWIMHEY 136

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 38/73 (52%), Positives = 51/73 (69%)

Query:     7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
             D EWYFF   ++KY N  RT R TR G+WK TGKDR++  ++R   IG+KK LV+Y+GR 
Sbjct:    61 DPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSR--AIGMKKTLVYYKGRA 118

Query:    67 SNAVKTSWVIHEY 79
                ++T WV+HEY
Sbjct:   119 PQGIRTDWVMHEY 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 36/80 (45%), Positives = 54/80 (67%)

Query:     9 EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
             EWYF+S  ++KY    RT R T AG+WK TGKD++++     +++G+KK LVFY+GR   
Sbjct:    77 EWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPR 136

Query:    69 AVKTSWVIHEYHSNNASAYQ 88
              +KT WV+HEY   N  +++
Sbjct:   137 GLKTKWVMHEYRLENDHSHR 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

TAIR|locus:2121323 NAC074 "NAC domain containing protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 35/71 (49%), Positives = 51/71 (71%)

Query:     9 EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
             EWYFFS  ++KYA   RT R T +G+WK TGKDR + D   ++++G++K LVFY  R  N
Sbjct:    81 EWYFFSFRDRKYATGYRTNRATVSGYWKATGKDRTVMDPRTRQLVGMRKTLVFYRNRAPN 140

Query:    69 AVKTSWVIHEY 79
              +KT+W++HE+
Sbjct:   141 GIKTTWIMHEF 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 39/74 (52%), Positives = 51/74 (68%)

Query:     7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQI-WDKNRKEVIGVKKNLVFYEGR 65
             D EWYFFS  ++KY N +RT R T+ G+WK TGKDR++ W   R   IG KK LV+Y GR
Sbjct:    61 DQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW---RDRAIGTKKTLVYYRGR 117

Query:    66 GSNAVKTSWVIHEY 79
               + ++T WV+HEY
Sbjct:   118 APHGIRTGWVMHEY 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 39/85 (45%), Positives = 53/85 (62%)

Query:     7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
             + EWYFFS  ++KY    RT R T AG+WK TGKDR+I+      ++G+KK LVFY+GR 
Sbjct:    70 EKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRA 129

Query:    67 SNAVKTSWVIHEYHSNNASAYQAFS 91
                 K++WV+HEY      +Y   S
Sbjct:   130 PKGEKSNWVMHEYRLEGKFSYHFIS 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 39/73 (53%), Positives = 53/73 (72%)

Query:     7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRG 66
             + EWYFF   ++KY    RT R T+AG+WK TGKD++I+ K  K ++G+KK LVFY+GR 
Sbjct:    77 EKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIF-KG-KSLVGMKKTLVFYKGRA 134

Query:    67 SNAVKTSWVIHEY 79
                VKT+WV+HEY
Sbjct:   135 PKGVKTNWVMHEY 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026201001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (177 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-34

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  114 bits (287), Expect = 2e-34
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 6   DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
            D EWYFFS  ++KY N +RT R T +G+WK TGKD+ +  K   EV+G+KK LVFY+GR
Sbjct: 55  GDREWYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKG-GEVVGMKKTLVFYKGR 113

Query: 66  GSNAVKTSWVIHEYH 80
                KT WV+HEY 
Sbjct: 114 APKGEKTDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.94

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.94  E-value=2.3e-26  Score=154.82  Aligned_cols=77  Identities=52%  Similarity=0.957  Sum_probs=58.6

Q ss_pred             cCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036            5 RDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSN   82 (98)
Q Consensus         5 ~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~   82 (98)
                      .++++||||+++.+++.++.|.+|++++|+||++|+.++|.+. ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        53 ~~~~~~yFF~~~~~~~~~~~r~~R~~~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   53 GGDEEWYFFSPRKKKYPNGGRPNRVTGGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             S-SSEEEEEEE----------S-EEETTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             CCCceEEEEEecccccCCcccccccccceEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            4567999999999999999999999999999999999999985 7779999999999999888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-15
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-15
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-15

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9   EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
           EWYFF+  ++KY N +R  R    G+WK TG D+ +  + R   +G+KK LVFY G+   
Sbjct: 70  EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR--TLGIKKALVFYAGKAPR 127
Query: 69  AVKTSWVIHEY 79
            VKT W++HEY
Sbjct: 128 GVKTDWIMHEY 138

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 3   AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
           A+  + EWYFFS  ++KY N +R  R   +G+WK TG D+ I  + ++  +G+KK LVFY
Sbjct: 69  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 126
Query: 63  EGRGSNAVKTSWVIHEYHSNNAS 85
            G+     KT+W++HEY     S
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPS 149

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 3   AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
           A+  + EWYFFS  ++KY N +R  R   +G+WK TG D+ I  + ++  +G+KK LVFY
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 123
Query: 63  EGRGSNAVKTSWVIHEYHSNNAS 85
            G+     KT+W++HEY     S
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPS 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	4e-35
1ut7_A	171	No apical meristem protein; transcription regulati	7e-35

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  117 bits (294), Expect = 4e-35
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 3   AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
           A+    EWYFF+  ++KY N +R  R    G+WK TG D+ +    R   +G+KK LVFY
Sbjct: 64  ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFY 121

Query: 63  EGRGSNAVKTSWVIHEYH 80
            G+    VKT W++HEY 
Sbjct: 122 AGKAPRGVKTDWIMHEYR 139

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  116 bits (292), Expect = 7e-35
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 2   AAIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVF 61
            A+  + EWYFFS  ++KY N +R  R   +G+WK TG D+ I  + +   +G+KK LVF
Sbjct: 65  KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ--RVGIKKALVF 122

Query: 62  YEGRGSNAVKTSWVIHEYH 80
           Y G+     KT+W++HEY 
Sbjct: 123 YIGKAPKGTKTNWIMHEYR 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=3.6e-33  Score=196.61  Aligned_cols=93  Identities=37%  Similarity=0.724  Sum_probs=75.8

Q ss_pred             cccCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036            3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSN   82 (98)
Q Consensus         3 a~~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~   82 (98)
                      +..++++|||||++.+|+++|.|++|+|++||||++|++++|.+  ++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus        66 ~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~  143 (171)
T 1ut7_A           66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLI  143 (171)
T ss_dssp             SSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred             hhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcC
Confidence            34678999999999999999999999999999999999999997  4589999999999999999999999999999999


Q ss_pred             CCCC-----CCCceEEEEec
Q 036036           83 NASA-----YQAFSYFTFVF   97 (98)
Q Consensus        83 ~~~~-----~~~~~~~~~~~   97 (98)
                      .++.     .+..-++|+||
T Consensus       144 ~~~~~~~~~~~~~~VlCrv~  163 (171)
T 1ut7_A          144 EPSRRNGSTKLDDWVLCRIY  163 (171)
T ss_dssp             CCC--------CCEEEEEEE
T ss_pred             CCccccCcccCCCEEEEEEE
Confidence            8752     34566888987

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=4.5e-33  Score=196.65  Aligned_cols=93  Identities=37%  Similarity=0.752  Sum_probs=76.8

Q ss_pred             cccCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036            3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSN   82 (98)
Q Consensus         3 a~~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~   82 (98)
                      +..++++|||||++.+|+++|.|++|+|++||||++|++++|.+  ++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus        64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~  141 (174)
T 3ulx_A           64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLA  141 (174)
T ss_dssp             CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred             hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeC
Confidence            34578899999999999999999999999999999999999987  3679999999999999999999999999999998


Q ss_pred             CCCCCC----------CceEEEEec
Q 036036           83 NASAYQ----------AFSYFTFVF   97 (98)
Q Consensus        83 ~~~~~~----------~~~~~~~~~   97 (98)
                      .+....          .-=++|+||
T Consensus       142 ~~~~~~~~~~~~~~~~~~wVlCrvf  166 (174)
T 3ulx_A          142 DAGRAAAGAKKGSLRLDDWVLCRLY  166 (174)
T ss_dssp             SCC-----------CCSSEEEEEEE
T ss_pred             CCCCcccccccCCCCCCCEEEEEEE
Confidence            865421          234889998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	4e-23

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.1 bits (210), Expect = 4e-23
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 3   AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
           A+  + EWYFFS  ++KY N +R  R   +G+WK TG D+ I      + +G+KK LVFY
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFY 123

Query: 63  EGRGSNAVKTSWVIHEYH 80
            G+     KT+W++HEY 
Sbjct: 124 IGKAPKGTKTNWIMHEYR 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	99.96

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.1e-29  Score=175.70  Aligned_cols=92  Identities=36%  Similarity=0.732  Sum_probs=73.6

Q ss_pred             ccCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeCC
Q 036036            4 IRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSNN   83 (98)
Q Consensus         4 ~~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~~   83 (98)
                      ..++++||||+++.+++++|.|.+|++++|+||++|++++|.+  ++.+||+|++|+||.++.|++.+|+|+||||+|.+
T Consensus        67 ~~~~~~wyFft~~~~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~  144 (166)
T d1ut7a_          67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE  144 (166)
T ss_dssp             SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECC
T ss_pred             ccCcceEEEEeeeccccCCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCC
Confidence            4578899999999999999999999999999999999998886  56799999999999999999999999999999987


Q ss_pred             CCCCC-----CceEEEEec
Q 036036           84 ASAYQ-----AFSYFTFVF   97 (98)
Q Consensus        84 ~~~~~-----~~~~~~~~~   97 (98)
                      ++...     .--+.|+||
T Consensus       145 ~~~~~~~~~~~~~VLCrI~  163 (166)
T d1ut7a_         145 PSRRNGSTKLDDWVLCRIY  163 (166)
T ss_dssp             CC--------CCEEEEEEE
T ss_pred             cccccCccccCCEEEEEEE
Confidence            65422     235788887