Citrus Sinensis ID: 036040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHccHHHHcccccccccHHHHHHHHHHHHccHEHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHEEHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
WRIVLMFGALPIAFTYYWrmkmpetphytalgamnagkaseDFSKLLVMNNNNSNNIIEQVQAVdqrndvvcgaadhddddkkgisFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAvgwlpaahtmGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIpyhhwiqkhnsTGFVVMYALTFFfanfgpnsttfivpaeifparfrstcHGISAAAGKAGAIIGAFGFLyaaqdqdkskadpgypagigIKNTLFLLAAVNVLGLLFTflvpepngrsleEISGEIeecesnksnpitdqfn
Flexible Loop (DISEMBL)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAadhddddkkGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISGeieecesnksnpitdqfn
Low Complexity Region (SEG)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMnnnnsnnIIEQVQAVDQRNdvvcgaadhddddkkgISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHgisaaagkagaiigafgflyaaQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLeeisgeieecesNKSNPITDQFN
Disordered region (IsUnstruct)
*RIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNA******FSKLLVMNN***NNIIEQVQAV*****VV**************SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ*********GYPAGIGIKNTLFLLAAVNVLGLLFTFLVP******************************
Disordered Region (DISOPRED)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLL**************************************SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEI********************
Disordered Region (DISEMBL)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN
Disordered Region (DISPRO)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCG*****DDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNG**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
O48639	521	Probable inorganic phosph	yes	no	0.899	0.583	0.650	1e-121
Q8VYM2	524	Inorganic phosphate trans	no	no	0.917	0.591	0.632	1e-121
Q8H6H2	538	Probable inorganic phosph	yes	no	0.928	0.583	0.628	1e-119
Q01MW8	538	Probable inorganic phosph	N/A	no	0.928	0.583	0.628	1e-119
Q7X7V2	548	Probable inorganic phosph	no	no	0.920	0.567	0.645	1e-118
Q8H6H0	534	Inorganic phosphate trans	no	no	0.899	0.569	0.629	1e-117
Q8GYF4	542	Probable inorganic phosph	no	no	0.908	0.566	0.614	1e-117
Q96303	534	Inorganic phosphate trans	no	no	0.893	0.565	0.612	1e-116
Q494P0	535	Probable inorganic phosph	no	no	0.893	0.564	0.617	1e-116
Q8H6G9	526	Probable inorganic phosph	no	no	0.908	0.583	0.617	1e-114

>sp|O48639|PHT13_ARATH Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 247/323 (76%), Gaps = 19/323 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI++MFGALP A TYYWRMKMPET  YTAL A N  +A+ D SK+L         + E+
Sbjct: 215 WRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVL----QTDLELEER 270

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           V+             D   D KK  ++GLFSK F RRHGLHLLGT STW LLD++++SQN
Sbjct: 271 VE-------------DDVKDPKK--NYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQN 315

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM A+ E+F  ARAQTL+ALC  +PGYW TV  IDIIGR  IQ
Sbjct: 316 LFQKDIFSAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQ 375

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFM A+A PY+HWI   N  GFVVMY+LTFFFANFGPN+TTFIVPAEIFPAR
Sbjct: 376 LMGFFMMTVFMFAIAFPYNHWILPDNRIGFVVMYSLTFFFANFGPNATTFIVPAEIFPAR 435

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA GKAGAI+GAFGFLYAAQ QDK+K D GYP GIG+KN+L +L  +N +G
Sbjct: 436 LRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGIGVKNSLIMLGVINFVG 495

Query: 301 LLFTFLVPEPNGRSLEEISGEIE 323
           +LFTFLVPEP G+SLEE+SGE E
Sbjct: 496 MLFTFLVPEPKGKSLEELSGEAE 518

High-affinity transporter for external inorganic phosphate.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM2|PHT11_ARATH Inorganic phosphate transporter 1-1 OS=Arabidopsis thaliana GN=PHT1-1 PE=1 SV=2

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 243/329 (73%), Gaps = 19/329 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI++MFGALP A TYYWRMKMPET  YTAL A N  +A+ D SK+L             
Sbjct: 215 WRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVL------------- 261

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
                 + D+       DD      ++GLFSK F RRHGLHLLGT STW LLD++++SQN
Sbjct: 262 ------QTDIELEERVEDDVKDPKQNYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQN 315

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM A  E+F  ARAQTL+ALC  +PGYW TV  ID IGR  IQ
Sbjct: 316 LFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQ 375

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L GFF MTVFM A+A PY+HWI+  N  GFVVMY+LTFFFANFGPN+TTFIVPAEIFPAR
Sbjct: 376 LNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFANFGPNATTFIVPAEIFPAR 435

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAAAGKAGAI+GAFGFLYAAQ QDK+K D GYP GIG+KN+L +L  +N +G
Sbjct: 436 LRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGIGVKNSLIMLGVLNFIG 495

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESNK 329
           +LFTFLVPEP G+SLEE+SGE E     K
Sbjct: 496 MLFTFLVPEPKGKSLEELSGEAEVSHDEK 524

High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H6H2|PHT14_ORYSJ Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/334 (62%), Positives = 242/334 (72%), Gaps = 20/334 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRIVLMFGA+P   TYYWRMKMPET  YTAL A NA +A+ D +++L     N   + EQ
Sbjct: 214 WRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMTQVL-----NVEIVEEQ 268

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            +A               D+  +   FGLFS+ F RRHG HLLGT   W +LD++++S N
Sbjct: 269 EKA---------------DEVARREQFGLFSRQFLRRHGRHLLGTTVCWFVLDIAFYSSN 313

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+I+TAV WLP A TM AL+E+F  +RAQTLVALCG IPGYW TV  IDIIGR  IQ
Sbjct: 314 LFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFFIDIIGRFVIQ 373

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L GFFFMT FML LA+PYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 374 LGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 433

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAAAGKAGAI+G+FGFLYAAQ  D SK D GYP GIG++N+LF LA  NV+G
Sbjct: 434 LRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSLFFLAGCNVIG 493

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESNKSNPIT 334
             FTFLVPE  G+SLEE+SGE E+ +     P T
Sbjct: 494 FFFTFLVPESKGKSLEELSGENEDDDDVPEAPAT 527

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01MW8|PHT14_ORYSI Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2

 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/334 (62%), Positives = 242/334 (72%), Gaps = 20/334 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRIVLMFGA+P   TYYWRMKMPET  YTAL A NA +A+ D +++L     N   + EQ
Sbjct: 214 WRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMTQVL-----NVEIVEEQ 268

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            +A               D+  +   FGLFS+ F RRHG HLLGT   W +LD++++S N
Sbjct: 269 EKA---------------DEVARREQFGLFSRQFLRRHGRHLLGTTVCWFVLDIAFYSSN 313

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+I+TAV WLP A TM AL+E+F  +RAQTLVALCG IPGYW TV  IDIIGR  IQ
Sbjct: 314 LFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFFIDIIGRFVIQ 373

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L GFFFMT FML LA+PYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 374 LGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 433

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAAAGKAGAI+G+FGFLYAAQ  D SK D GYP GIG++N+LF LA  NV+G
Sbjct: 434 LRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSLFFLAGCNVIG 493

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESNKSNPIT 334
             FTFLVPE  G+SLEE+SGE E+ +     P T
Sbjct: 494 FFFTFLVPESKGKSLEELSGENEDDDDVPEAPST 527

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7X7V2|PHT15_ORYSJ Probable inorganic phosphate transporter 1-5 OS=Oryza sativa subsp. japonica GN=PHT1-5 PE=2 SV=2

 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/324 (64%), Positives = 242/324 (74%), Gaps = 13/324 (4%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRIVLMFGA+P   TYYWRMKMPET  YTAL A N  KA+ D +++L             
Sbjct: 214 WRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNDKKAAADMARVL------------N 261

Query: 61  VQAVD-QRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQ 119
           V+ VD Q       AA  +++  +   +GLFS+ FARRHG HLLGT   W +LD++Y+SQ
Sbjct: 262 VELVDEQEKAAAATAAAAEEEAARREQYGLFSREFARRHGHHLLGTTVCWFVLDIAYYSQ 321

Query: 120 NLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179
           NLFQK+I+TAV WLP A TM AL+E+F  +RAQTLVALCG IPGYW TV+ IDI+GR  I
Sbjct: 322 NLFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVLFIDIVGRFAI 381

Query: 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239
           QL GFF MT FML LA+PYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPA
Sbjct: 382 QLGGFFLMTAFMLGLAVPYHHWTTPGNHVGFVVMYAFTFFFANFGPNSTTFIVPAEIFPA 441

Query: 240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL 299
           R RSTCHGIS+AAGK GAI+G+FGFLYAAQ  D SK D GYP GIG++N+LFLLA  NV+
Sbjct: 442 RLRSTCHGISSAAGKMGAIVGSFGFLYAAQSTDPSKTDAGYPRGIGVRNSLFLLAGCNVV 501

Query: 300 GLLFTFLVPEPNGRSLEEISGEIE 323
           G LFTFLVPE  G+SLEE+SGE E
Sbjct: 502 GFLFTFLVPESKGKSLEELSGENE 525

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H6H0|PHT16_ORYSJ Inorganic phosphate transporter 1-6 OS=Oryza sativa subsp. japonica GN=PHT1-6 PE=1 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 246/327 (75%), Gaps = 23/327 (7%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LM GALP A TYYWR KMPET  YTAL A NA +A+ D SK+L             
Sbjct: 220 WRIILMLGALPAALTYYWRTKMPETARYTALVANNAKQAAADMSKVL------------- 266

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            Q V+ RN    G +           FGLFS  F RRHGLHL+GT++TWLLLD++++SQN
Sbjct: 267 -QVVEMRNIGNNGGSRRP--------FGLFSGEFVRRHGLHLVGTSATWLLLDIAFYSQN 317

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+AVGW+P A TM AL+ELF  ARAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 318 LFQKDIFSAVGWIPKAATMSALEELFRIARAQTLIALCGTVPGYWFTVALIDVVGRFKIQ 377

Query: 181 LIGFFFMTVFMLALAIPYHHWIQK-HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239
            +GFF MT+FML LA+PYHHW     N  GF+++Y LTFFFANFGPNSTTFIVPAEIFPA
Sbjct: 378 AVGFFMMTLFMLTLALPYHHWTAPGKNHVGFLLLYGLTFFFANFGPNSTTFIVPAEIFPA 437

Query: 240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL 299
           R R+TCHGISAA+GK GAI+G+FGFLY AQ  D+SK + GYP GIG++N+LFLLAA N+L
Sbjct: 438 RLRATCHGISAASGKLGAIVGSFGFLYLAQSPDRSKTEHGYPPGIGVRNSLFLLAACNLL 497

Query: 300 GLLFTFLVPEPNGRSLEEISGEIEECE 326
           GLLFTFLVPE  G+SLEE+SG+ E  E
Sbjct: 498 GLLFTFLVPESKGKSLEEMSGDAEAQE 524

High-affinity transporter for external inorganic phosphate (Pi). Probably involved in Pi uptake, translocation and internal transport throughout the plant.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GYF4|PHT15_ARATH Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2

 Score =  420 bits (1080), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 242/324 (74%), Gaps = 17/324 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRIVLMFGA+P   TYYWRMKMPET  YTAL A N  +A+ D SK+L            Q
Sbjct: 215 WRIVLMFGAIPALLTYYWRMKMPETARYTALVARNTKQAASDMSKVL------------Q 262

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           V  + +       A  + +      +FGLF++ FARRHGLHLLGT +TW LLD++Y+S N
Sbjct: 263 VDLIAEEE-----AQSNSNSSNPNFTFGLFTREFARRHGLHLLGTTTTWFLLDIAYYSSN 317

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+I+TA+GW+PAA TM A+ E+F  ++AQTL+ALCG +PGYW TV  IDI+GR  IQ
Sbjct: 318 LFQKDIYTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPGYWFTVAFIDILGRFFIQ 377

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GF FMT+FM ALAIPY HW  + N  GF++MY+LT FFANFGPN+TTF+VPAEIFPAR
Sbjct: 378 LMGFIFMTIFMFALAIPYDHWRHRENRIGFLIMYSLTMFFANFGPNATTFVVPAEIFPAR 437

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAI+GAFGFLYAAQ  D  K D GYP GIG++N+L +LA VN LG
Sbjct: 438 LRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPGIGVRNSLLMLACVNFLG 497

Query: 301 LLFTFLVPEPNGRSLEEISGEIEE 324
           ++FT LVPE  G+SLEEIS E EE
Sbjct: 498 IVFTLLVPESKGKSLEEISREDEE 521

High-affinity transporter for external inorganic phosphate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96303|PHT14_ARATH Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 240/320 (75%), Gaps = 18/320 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LM GA+P A TYY R KMPET  YTAL A +A +A+ D SK+L +        +E+
Sbjct: 215 WRIILMAGAIPAAMTYYSRSKMPETARYTALVAKDAKQAASDMSKVLQVEIEPEQQKLEE 274

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           +                    +K  +FGLFSK F  RHGLHLLGT STW LLD++++SQN
Sbjct: 275 I------------------SKEKSKAFGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQN 316

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A +M A+ E+F  ARAQTL+ALC  +PGYW TV  ID+IGR  IQ
Sbjct: 317 LFQKDIFSAIGWIPPAQSMNAIQEVFKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQ 376

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           ++GFFFMTVFM ALAIPY+HW  K N  GFV+MY+LTFFFANFGPN+TTF+VPAEIFPAR
Sbjct: 377 MMGFFFMTVFMFALAIPYNHWTHKENRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPAR 436

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
           FRSTCHGISAA+GK GA++GAFGFLY AQ+ DK K D GYP GIG++N+L +L  VN LG
Sbjct: 437 FRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPPGIGVRNSLIVLGVVNFLG 496

Query: 301 LLFTFLVPEPNGRSLEEISG 320
           +LFTFLVPE  G+SLEE+SG
Sbjct: 497 ILFTFLVPESKGKSLEEMSG 516

High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q494P0|PHT17_ARATH Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 241/324 (74%), Gaps = 22/324 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LM GALP A TYY R KMPET  YTAL A +A  A+ + SK+L            Q
Sbjct: 215 WRIILMVGALPAAMTYYSRSKMPETARYTALVAKDAKLAASNMSKVL------------Q 262

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           V+            A+    + K  SFGLFSK F +RHGLHLLGT STW LLD++++SQN
Sbjct: 263 VEI----------EAEQQGTEDKSNSFGLFSKEFMKRHGLHLLGTTSTWFLLDIAFYSQN 312

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM A+ E+F  ARAQTL+ALC  +PGYW TV  ID+IGR  IQ
Sbjct: 313 LFQKDIFSAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQ 372

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           ++GFFFMTVFM ALAIPY HW  K N  GFV MY+LTFFFANFGPN+TTF+VPAEIFPAR
Sbjct: 373 MMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFGPNATTFVVPAEIFPAR 432

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
           FRSTCHGISAA+GK GA++GAFGFLY AQ  DK+K + GYP GIG+KN+L +L  VN+LG
Sbjct: 433 FRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGIGVKNSLIVLGVVNLLG 492

Query: 301 LLFTFLVPEPNGRSLEEISGEIEE 324
           ++FT LVPE  G+SLEE+SGE E+
Sbjct: 493 MVFTLLVPESKGKSLEEMSGENEQ 516

High-affinity transporter for external inorganic phosphate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H6G9|PHT17_ORYSJ Probable inorganic phosphate transporter 1-7 OS=Oryza sativa subsp. japonica GN=PHT1-7 PE=2 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 242/324 (74%), Gaps = 17/324 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR++LMFGALP A T+YWRM+MPET  YTA+ A NA +A+ D SK+L            Q
Sbjct: 215 WRLILMFGALPAALTFYWRMRMPETARYTAIVAKNAERAAADMSKVL------------Q 262

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           V+   ++ ++    A   D       FGLFS  FARRHG HLLGT STWLLLD++Y+SQN
Sbjct: 263 VKITAEQAEM----ASPVDKPFTSKPFGLFSGEFARRHGFHLLGTTSTWLLLDIAYYSQN 318

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM ALDEL++ ARAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 319 LFQKDIFSAIGWIPEAKTMSALDELYHIARAQTLIALCGTVPGYWFTVALIDVVGRFKIQ 378

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
             GFF MT FMLALA+PY HW    N  GFVV+YALTFFFANFGPN+TTFIVPAEI+PAR
Sbjct: 379 AAGFFVMTAFMLALAVPYDHWTAAGNQIGFVVLYALTFFFANFGPNATTFIVPAEIYPAR 438

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP-GYPAGIGIKNTLFLLAAVNVL 299
            R+TCHGISAA+GK GAI+G+FGFLY AQ    +KA   GYP GIG++N+LF LA  ++L
Sbjct: 439 LRATCHGISAASGKVGAIVGSFGFLYLAQSPVPAKAAAHGYPPGIGVRNSLFALAGCSLL 498

Query: 300 GLLFTFLVPEPNGRSLEEISGEIE 323
           G L TFLVPEP G+SLEE+S E E
Sbjct: 499 GFLLTFLVPEPKGKSLEEMSRENE 522

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
425872916	338	phosphate transporter, partial [Citrus t	1.0	1.0	1.0	0.0
242034327	541	hypothetical protein SORBIDRAFT_01g02057	0.917	0.573	0.649	1e-123
195638308	508	inorganic phosphate transporter 1-4 [Zea	0.911	0.606	0.643	1e-123
162458548	539	phosphate transporter protein1 [Zea mays	0.911	0.571	0.643	1e-123
65335863	542	inorganic phosphate transporter 2 [Zea m	0.920	0.573	0.640	1e-122
162461219	541	phosphate transporter protein2 [Zea mays	0.917	0.573	0.637	1e-122
194702288	539	unknown [Zea mays] gi|238007276|gb|ACR34	0.911	0.571	0.637	1e-122
389497057	368	phosphate transporter, partial [Helianth	0.896	0.823	0.648	1e-121
225433120	537	PREDICTED: inorganic phosphate transport	0.905	0.569	0.645	1e-121
194700526	539	unknown [Zea mays]	0.911	0.571	0.634	1e-121

>gi|425872916|gb|AFY06662.1| phosphate transporter, partial [Citrus trifoliata]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ
Sbjct: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN
Sbjct: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ
Sbjct: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
           FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG
Sbjct: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN 338
           LLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN
Sbjct: 301 LLFTFLVPEPNGRSLEEISGEIEECESNKSNPITDQFN 338

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034327|ref|XP_002464558.1| hypothetical protein SORBIDRAFT_01g020570 [Sorghum bicolor] gi|241918412|gb|EER91556.1| hypothetical protein SORBIDRAFT_01g020570 [Sorghum bicolor]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/328 (64%), Positives = 257/328 (78%), Gaps = 18/328 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LM GALP   TYYWRMKMPET  YTAL A NA +A+ D SK+L         I+++
Sbjct: 217 WRIILMLGALPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL------HTEIVDE 270

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + +DQ   +V   ++         +FGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 271 QEKLDQ---MVTAESN---------TFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 318

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFTA+ W+P A+TM AL+E+F  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 319 LFQKDIFTAINWIPKANTMSALEEVFRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 378

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMY  TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 379 LLGFFMMTVFMLGLAIPYHHWTTAGNHIGFVVMYGFTFFFANFGPNSTTFIVPAEIFPAR 438

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QDKSKAD GYPAGIG++N+LF+LA  N+LG
Sbjct: 439 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDKSKADAGYPAGIGVRNSLFVLAGCNMLG 498

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE ++ E  
Sbjct: 499 FVLTFLVPESKGKSLEEMSGEADDAEEE 526

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195638308|gb|ACG38622.1| inorganic phosphate transporter 1-4 [Zea mays]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/328 (64%), Positives = 254/328 (77%), Gaps = 20/328 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR++LM GA P   TYYWRMKMPET  YTAL A NA +A+ D SK+L            Q
Sbjct: 186 WRVILMLGAAPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL------------Q 233

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + VD++  +        D  +   SFGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 234 TEIVDEQEKL--------DAAEGANSFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 285

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E++  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 286 LFQKDIFTSINWIPKANTMSALEEVYRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 345

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 346 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 405

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QD+SK D GYPAGIG++N+LF+LAA N+LG
Sbjct: 406 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDRSKTDAGYPAGIGVRNSLFVLAASNMLG 465

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE E+ E  
Sbjct: 466 FVLTFLVPESKGKSLEEMSGEAEDSEEE 493

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162458548|ref|NP_001105269.1| phosphate transporter protein1 [Zea mays] gi|49066604|gb|AAT51690.1| phosphate transport protein [Zea mays]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/328 (64%), Positives = 254/328 (77%), Gaps = 20/328 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR++LM GA P   TYYWRMKMPET  YTAL A NA +A+ D SK+L            Q
Sbjct: 217 WRVILMLGAAPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL------------Q 264

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + VD++  +        D  +   SFGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 265 TEIVDEQEKL--------DAAEGANSFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 316

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E++  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 317 LFQKDIFTSINWIPKANTMSALEEVYRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 376

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 377 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 436

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QD+SK D GYPAGIG++N+LF+LAA N+LG
Sbjct: 437 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDRSKTDAGYPAGIGVRNSLFVLAASNMLG 496

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE E+ E  
Sbjct: 497 FVLTFLVPESRGKSLEEMSGEAEDSEEE 524

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|65335863|gb|AAY42386.1| inorganic phosphate transporter 2 [Zea mays]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/328 (64%), Positives = 252/328 (76%), Gaps = 17/328 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR++LM GA P   TYYWRMKMPET  YTAL A NA +A+ D SK+L     +    ++ 
Sbjct: 217 WRVILMLGAAPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLHTEILDEQEKLDG 276

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           + A +  N                 SFGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 277 MVAAEGAN-----------------SFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 319

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E++  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 320 LFQKDIFTSINWIPKANTMSALEEVYRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 379

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 380 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 439

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QDKSK D GYPAGIG++N+LF+LAA N+LG
Sbjct: 440 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDKSKTDAGYPAGIGVRNSLFVLAASNMLG 499

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE E+ E  
Sbjct: 500 FVLTFLVPESKGKSLEEMSGEAEDSEEE 527

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162461219|ref|NP_001105816.1| phosphate transporter protein2 [Zea mays] gi|65335848|gb|AAY42385.1| inorganic phosphate transporter 1 [Zea mays] gi|223944389|gb|ACN26278.1| unknown [Zea mays] gi|414871277|tpg|DAA49834.1| TPA: phosphate transport protein [Zea mays]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 259/328 (78%), Gaps = 18/328 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+L+ GA P   TYYWRMKMPET  YTAL A NA +A+ D S++L         I+++
Sbjct: 217 WRIILILGAAPAMLTYYWRMKMPETARYTALVAKNAKQAAADMSRVL------QTEIVDE 270

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + +D+   +V   ++         +FGLFS+ FARRHGLHL+GT++TW LLD++++SQN
Sbjct: 271 QEKLDE---MVTAESN---------TFGLFSREFARRHGLHLVGTSTTWFLLDIAFYSQN 318

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E+F  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 319 LFQKDIFTSINWIPKANTMSALEEVFRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 378

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 379 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 438

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QDKSKAD GYPAGIG++N+LF+LAA N+LG
Sbjct: 439 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDKSKADAGYPAGIGVRNSLFVLAASNLLG 498

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE ++ E +
Sbjct: 499 FILTFLVPESKGKSLEEMSGEADDAEDD 526

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194702288|gb|ACF85228.1| unknown [Zea mays] gi|238007276|gb|ACR34673.1| unknown [Zea mays] gi|413934129|gb|AFW68680.1| inorganic phosphate transporter 1-4 [Zea mays]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 253/328 (77%), Gaps = 20/328 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR+++M GA P   TYYWRMKMPET  YTAL A NA +A+ D SK+L             
Sbjct: 217 WRVIVMLGAAPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL------------H 264

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + VD++  +        D  +   SFGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 265 TEIVDEQEKL--------DAAEGANSFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 316

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E++  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 317 LFQKDIFTSINWIPKANTMSALEEVYRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 376

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 377 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 436

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QD+SK D GYPAGIG++N+LF+LAA N+LG
Sbjct: 437 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDRSKTDAGYPAGIGVRNSLFVLAASNMLG 496

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE E+ E  
Sbjct: 497 FVLTFLVPESKGKSLEEMSGEAEDSEEE 524

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389497057|gb|AFK82642.1| phosphate transporter, partial [Helianthus annuus]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/324 (64%), Positives = 249/324 (76%), Gaps = 21/324 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LMFG++P   TYYWRMKMPET  YTAL A N  +A+ D SK+L            Q
Sbjct: 45  WRIILMFGSIPALMTYYWRMKMPETARYTALVAKNTKQAAADMSKVL------------Q 92

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           V+   ++  VV         +K+   FGLFSK F +RHGLHLLGT STW LLD++++SQN
Sbjct: 93  VELEAEQEKVV---------EKQHNQFGLFSKQFVKRHGLHLLGTTSTWFLLDIAFYSQN 143

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM A+ E+F  +RAQTL+ALC  +PGYW TV  ID IGR  IQ
Sbjct: 144 LFQKDIFSAIGWIPPAKTMNAIQEVFKISRAQTLIALCSTVPGYWFTVFFIDRIGRFAIQ 203

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFFFMTVFM ALAIPYHHW Q+ N  GFVVMYA TFFFANFGPN+TTF+VPAEIFPAR
Sbjct: 204 LMGFFFMTVFMFALAIPYHHWTQRENRIGFVVMYAFTFFFANFGPNATTFVVPAEIFPAR 263

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYAAQ+QDK+K D GYP GIG+KN+L +L  VN LG
Sbjct: 264 LRSTCHGISAASGKAGAIIGAFGFLYAAQNQDKTKTDKGYPPGIGVKNSLIVLGVVNFLG 323

Query: 301 LLFTFLVPEPNGRSLEEISGEIEE 324
           +LFTFLVPE NG+SLEE+S E E+
Sbjct: 324 ILFTFLVPESNGKSLEEMSRENED 347

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433120|ref|XP_002281264.1| PREDICTED: inorganic phosphate transporter 1-4 [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/324 (64%), Positives = 252/324 (77%), Gaps = 18/324 (5%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI+LMFGA P A TYYWRMKMPET  YTAL A NA KA+ D SK+L ++       +E+
Sbjct: 215 WRIILMFGAAPAALTYYWRMKMPETARYTALVAKNARKAAADMSKVLQVDIEAEETKVEK 274

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
           + A++  N                 SFGLFS+ FARRHGLHLLGT STW LLD++++SQN
Sbjct: 275 L-AMEPAN-----------------SFGLFSRQFARRHGLHLLGTTSTWFLLDIAFYSQN 316

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IF+A+GW+P A TM A+ E+F  A+AQTL+ALC  +PGYW TVI ID +GR  IQ
Sbjct: 317 LFQKDIFSAIGWIPKAETMNAIHEVFRIAKAQTLIALCSTVPGYWCTVIFIDYMGRFAIQ 376

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFFFMTVFM ALAIPYHHW    N  GFVVMY+LTFFFANFGPN+TTF+VPAEIFPAR
Sbjct: 377 LMGFFFMTVFMFALAIPYHHWTLAPNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPAR 436

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAFGFLYA+Q QDK++ D GYP GIG++N+L +L  +N LG
Sbjct: 437 LRSTCHGISAASGKAGAIIGAFGFLYASQSQDKTQTDAGYPPGIGMRNSLIVLGVINFLG 496

Query: 301 LLFTFLVPEPNGRSLEEISGEIEE 324
           +LFTFLVPEP G+SLEE++GE E+
Sbjct: 497 MLFTFLVPEPKGKSLEEMTGENED 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194700526|gb|ACF84347.1| unknown [Zea mays]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/328 (63%), Positives = 252/328 (76%), Gaps = 20/328 (6%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WR+++M GA P   TYYWRMKMPET  YTAL A NA +A+ D SK+L             
Sbjct: 217 WRVIVMLGAAPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL------------H 264

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
            + VD++  +        D  +   SFGLFS+ FARRHGLHL+GTA+TW LLD++++SQN
Sbjct: 265 TEIVDEQEKL--------DAAEGANSFGLFSREFARRHGLHLVGTATTWFLLDIAFYSQN 316

Query: 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
           LFQK+IFT++ W+P A+TM AL+E++  +RAQTL+ALCG +PGYW TV LID++GR  IQ
Sbjct: 317 LFQKDIFTSINWIPKANTMSALEEVYRISRAQTLIALCGTVPGYWFTVALIDVVGRFAIQ 376

Query: 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240
           L+GFF MTVFML LAIPYHHW    N  GFVVMYA TFFFANFGPNSTTFIVPAEIFPAR
Sbjct: 377 LLGFFMMTVFMLGLAIPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVPAEIFPAR 436

Query: 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLG 300
            RSTCHGISAA+GKAGAIIGAF FLYAAQ+QD+SK D GYPAGIG++N+LF+LAA N+LG
Sbjct: 437 LRSTCHGISAASGKAGAIIGAFSFLYAAQNQDRSKTDAGYPAGIGVRNSLFVLAASNMLG 496

Query: 301 LLFTFLVPEPNGRSLEEISGEIEECESN 328
            + TFLVPE  G+SLEE+SGE E+ E  
Sbjct: 497 FVLTFLVPESKGKSLEEMSGEAEDSEEE 524

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2176471	521	PHT1;3 "phosphate transporter	0.680	0.441	0.634	2.9e-97
TAIR|locus:2176481	524	PHT1;2 "phosphate transporter	0.680	0.438	0.630	2.6e-96
TAIR|locus:2176461	524	PHT1;1 "AT5G43350" [Arabidopsi	0.680	0.438	0.630	2.6e-96
TAIR|locus:2064895	534	PHT1;4 "phosphate transporter	0.680	0.430	0.626	2.6e-94
TAIR|locus:2046432	542	PHT1;5 "phosphate transporter	0.680	0.424	0.595	5.4e-94
TAIR|locus:2102450	535	PHT1;7 "AT3G54700" [Arabidopsi	0.680	0.429	0.626	2.3e-93
TAIR|locus:2176451	516	PHT1;6 "phosphate transporter	0.639	0.418	0.558	9.4e-82
TAIR|locus:2037390	534	PHT1;8 "phosphate transporter	0.677	0.428	0.399	1.6e-55
TAIR|locus:2011681	532	PHT1;9 "AT1G76430" [Arabidopsi	0.869	0.552	0.383	1.5e-51
SGD|S000004592	587	PHO84 "High-affinity inorganic	0.650	0.374	0.324	1.2e-33

TAIR|locus:2176471 PHT1;3 "phosphate transporter 1;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 146/230 (63%), Positives = 173/230 (75%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             ++GLFSK F RRHGLHLLGT STW LLD++++SQNLFQK+IF+A+GW+P A TM A+ E+
Sbjct:   281 NYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNAIHEV 340

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ARAQTL+ALC  +PGYW TV  IDIIGR  IQL+GFF MTVFM A+A PY+HWI   
Sbjct:   341 FKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNHWILPD 400

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GFVVMY+LTFFFANFGPN+TTFIVPAEIFPAR RSTCH                   
Sbjct:   401 NRIGFVVMYSLTFFFANFGPNATTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFL 460

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q QDK+K D GYP GIG+KN+L +L  +N +G+LFTFLVPEP G+SL
Sbjct:   461 YAAQPQDKTKTDAGYPPGIGVKNSLIMLGVINFVGMLFTFLVPEPKGKSL 510

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176481 PHT1;2 "phosphate transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 145/230 (63%), Positives = 172/230 (74%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             ++GLFSK F RRHGLHLLGT STW LLD++++SQNLFQK+IF+A+GW+P A TM A  E+
Sbjct:   281 NYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEV 340

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ARAQTL+ALC  +PGYW TV  ID IGR  IQL GFF MTVFM A+A PY+HWI+  
Sbjct:   341 FRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPE 400

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GFVVMY+LTFFFANFGPN+TTFIVPAEIFPAR RSTCH                   
Sbjct:   401 NRIGFVVMYSLTFFFANFGPNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFL 460

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q+QDK+K D GYP GIG+KN+L +L  +N +G+LFTFLVPEP G+SL
Sbjct:   461 YAAQNQDKAKVDAGYPPGIGVKNSLIVLGVLNFIGMLFTFLVPEPKGKSL 510

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA;TAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

TAIR|locus:2176461 PHT1;1 "AT5G43350" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 145/230 (63%), Positives = 171/230 (74%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             ++GLFSK F RRHGLHLLGT STW LLD++++SQNLFQK+IF+A+GW+P A TM A  E+
Sbjct:   281 NYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEV 340

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ARAQTL+ALC  +PGYW TV  ID IGR  IQL GFF MTVFM A+A PY+HWI+  
Sbjct:   341 FRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPE 400

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GFVVMY+LTFFFANFGPN+TTFIVPAEIFPAR RSTCH                   
Sbjct:   401 NRIGFVVMYSLTFFFANFGPNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFL 460

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q QDK+K D GYP GIG+KN+L +L  +N +G+LFTFLVPEP G+SL
Sbjct:   461 YAAQSQDKAKVDAGYPPGIGVKNSLIMLGVLNFIGMLFTFLVPEPKGKSL 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS;IMP

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:1901683 "arsenate ion transmembrane transporter activity" evidence=IMP

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IDA

TAIR|locus:2064895 PHT1;4 "phosphate transporter 1;4" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
 Identities = 144/230 (62%), Positives = 173/230 (75%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             +FGLFSK F  RHGLHLLGT STW LLD++++SQNLFQK+IF+A+GW+P A +M A+ E+
Sbjct:   282 AFGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQSMNAIQEV 341

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ARAQTL+ALC  +PGYW TV  ID+IGR  IQ++GFFFMTVFM ALAIPY+HW  K 
Sbjct:   342 FKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYNHWTHKE 401

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GFV+MY+LTFFFANFGPN+TTF+VPAEIFPARFRSTCH                   
Sbjct:   402 NRIGFVIMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFL 461

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q+ DK K D GYP GIG++N+L +L  VN LG+LFTFLVPE  G+SL
Sbjct:   462 YLAQNPDKDKTDAGYPPGIGVRNSLIVLGVVNFLGILFTFLVPESKGKSL 511

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2046432 PHT1;5 "phosphate transporter 1;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
 Identities = 137/230 (59%), Positives = 170/230 (73%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             +FGLF++ FARRHGLHLLGT +TW LLD++Y+S NLFQK+I+TA+GW+PAA TM A+ E+
Sbjct:   283 TFGLFTREFARRHGLHLLGTTTTWFLLDIAYYSSNLFQKDIYTAIGWIPAAETMNAIHEV 342

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ++AQTL+ALCG +PGYW TV  IDI+GR  IQL+GF FMT+FM ALAIPY HW  + 
Sbjct:   343 FTVSKAQTLIALCGTVPGYWFTVAFIDILGRFFIQLMGFIFMTIFMFALAIPYDHWRHRE 402

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GF++MY+LT FFANFGPN+TTF+VPAEIFPAR RSTCH                   
Sbjct:   403 NRIGFLIMYSLTMFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFL 462

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q  D  K D GYP GIG++N+L +LA VN LG++FT LVPE  G+SL
Sbjct:   463 YAAQSSDSEKTDAGYPPGIGVRNSLLMLACVNFLGIVFTLLVPESKGKSL 512

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA;IMP

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2102450 PHT1;7 "AT3G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 144/230 (62%), Positives = 172/230 (74%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             SFGLFSK F +RHGLHLLGT STW LLD++++SQNLFQK+IF+A+GW+P A TM A+ E+
Sbjct:   278 SFGLFSKEFMKRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNAIQEV 337

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH 205
             F  ARAQTL+ALC  +PGYW TV  ID+IGR  IQ++GFFFMTVFM ALAIPY HW  K 
Sbjct:   338 FKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKE 397

Query:   206 NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXX 265
             N  GFV MY+LTFFFANFGPN+TTF+VPAEIFPARFRSTCH                   
Sbjct:   398 NRIGFVAMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFL 457

Query:   266 XXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                Q  DK+K + GYP GIG+KN+L +L  VN+LG++FT LVPE  G+SL
Sbjct:   458 YLAQSPDKTKTEHGYPPGIGVKNSLIVLGVVNLLGMVFTLLVPESKGKSL 507

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:1901683 "arsenate ion transmembrane transporter activity" evidence=IMP

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

TAIR|locus:2176451 PHT1;6 "phosphate transporter 1;6" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
 Identities = 128/229 (55%), Positives = 160/229 (69%)

Query:    87 FGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELF 146
             FGLFS  F RRHGLHLLGTASTW LLD++++SQNLFQK+IFT +GWLP+A TM A+ EL+
Sbjct:   283 FGLFSMKFLRRHGLHLLGTASTWFLLDIAFYSQNLFQKDIFTTIGWLPSAKTMNAIQELY 342

Query:   147 NFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHN 206
               A+AQT++A C  +PGY+ TV  ID +GR  IQ++GF  MT+FML+LAIPYHHW    N
Sbjct:   343 MIAKAQTIIACCSTVPGYFFTVGFIDYMGRKKIQIMGFAMMTIFMLSLAIPYHHWTLPAN 402

Query:   207 STGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXXXX 266
               GFVV+Y+ TFFF+NFGPN+TTFIVPAEIFPAR RSTCH                    
Sbjct:   403 RIGFVVLYSFTFFFSNFGPNATTFIVPAEIFPARIRSTCHGISAASGKAGAMVGSFGFSA 462

Query:   267 XXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                     KA       +G+ NTL+++A +N+LGLL TF +PE NG+SL
Sbjct:   463 LV------KA-------LGMSNTLYIMAGINLLGLLLTFTIPETNGKSL 498

GO:0005215 "transporter activity" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037390 PHT1;8 "phosphate transporter 1;8" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 93/233 (39%), Positives = 123/233 (52%)

Query:    86 SFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDEL 145
             S+ LFS+ F R HG  L   +  W L+D+ +++ NL    IF+     P+       D  
Sbjct:   270 SYKLFSRCFFRLHGRDLFAASFNWFLVDIVFYTSNLLLSHIFSHYSKKPST-AENVYDAA 328

Query:   146 FNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH-HWIQ- 203
             F  A    ++A C  IPGYW TV  ID IGRV IQ++GFFFM V  L   IPY  +W + 
Sbjct:   329 FEVAELGAIIAACSTIPGYWFTVYFIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKH 388

Query:   204 KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXX 263
             +HN+ GF+V+Y L FFF NFGPN+TTFI+PAE FPARFRSTCH                 
Sbjct:   389 EHNNKGFMVLYGLVFFFCNFGPNTTTFIIPAEHFPARFRSTCHGISGAAGKLGAIVGTVG 448

Query:   264 XXXXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT-FLVPEPNGRSL 315
                  +  +    +  YP    ++    +L  V + G+L T F   E  GRSL
Sbjct:   449 FLWATKKMESDDKNQIYPEVNRMRIAFLILGGVCIAGILVTYFFTKETMGRSL 501

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011681 PHT1;9 "AT1G76430" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 122/318 (38%), Positives = 163/318 (51%)

Query:     1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMXXXXXXXIIEQ 60
             WR++LM GALP A T+YWRM MPET  YTAL   N  +A++D  +  VM       I E 
Sbjct:   211 WRLILMIGALPAALTFYWRMLMPETARYTALVENNVVQAAKDMQR--VMSVSMISQITED 268

Query:    61 VQAVDQRNXXXXXXXXXXXXXXXXISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQN 120
               +  ++                  S+ LFS+ F   HG  L   ++ W L+DV +++ N
Sbjct:   269 SSSELEQPPSSS-------------SYKLFSRRFLSLHGRDLFAASANWFLVDVVFYTSN 315

Query:   121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180
             L   +IF      P   T    D  F  A+   +VA C  IPGYW TV  ID IGRV IQ
Sbjct:   316 LLLSQIFNFSN-KPLNST-NVYDSAFEVAKLAAIVAACSTIPGYWFTVYFIDKIGRVKIQ 373

Query:   181 LIGFFFMTVFMLALAIPYHHWIQKHNST--GFVVMYALTFFFANFGPNSTTFIVPAEIFP 238
             ++GFF M V  L   IPY  +  KH  T  GF+V+Y L FFF+NFGPN+TTFI+PAE+FP
Sbjct:   374 MMGFFLMAVVYLVAGIPYSWYWSKHEKTNKGFMVLYGLIFFFSNFGPNTTTFIIPAELFP 433

Query:   239 ARFRSTCHXXXXXXXXXXXXXXXXXXXXXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNV 298
             ARFRSTCH                      +  ++     G+P    ++    +L  V +
Sbjct:   434 ARFRSTCHGISGAAGKFGAIVGTVGFLWATRHHEED----GFPDVKRVRIAFLILGGVCI 489

Query:   299 LGLLFTFLVP-EPNGRSL 315
              G++ T+L   E  GRSL
Sbjct:   490 AGMIVTYLFTRETMGRSL 507

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IGI;ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=IDA

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

SGD|S000004592 PHO84 "High-affinity inorganic phosphate (Pi) transporter and low-affinity m" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 336 (123.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 75/231 (32%), Positives = 113/231 (48%)

Query:    86 SFGLFSKMFAR-RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDE 144
             SF  F + F + ++G  LLGTA +W  LDV+++  +L    I   +G+   A +     +
Sbjct:   330 SFKDFCRHFGQWKYGKILLGTAGSWFTLDVAFYGLSLNSAVILQTIGY---AGSKNVYKK 386

Query:   145 LFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK 204
             L++ A    ++   G +PGYW++V  +DIIGR  IQL GF  +T     +   YH    K
Sbjct:   387 LYDTAVGNLILICAGSLPGYWVSVFTVDIIGRKPIQLAGFIILTALFCVIGFAYH----K 442

Query:   205 HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHXXXXXXXXXXXXXXXXXX 264
                 G + +Y +  FF NFGPN+TTFIVP E FP R+RST H                  
Sbjct:   443 LGDHGLLALYVICQFFQNFGPNTTTFIVPGECFPTRYRSTAHGISAASGKVGAIIAQTAL 502

Query:   265 XXXXQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315
                    D + A  G P    + + + + A   +LG+  T L+PE   ++L
Sbjct:   503 GTLI---DHNCARDGKPTNCWLPHVMEIFALFMLLGIFTTLLIPETKRKTL 550

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006797 "polyphosphate metabolic process" evidence=IMP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS;IDA;IMP

GO:0006817 "phosphate ion transport" evidence=IEA;ISS;IDA;IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS;IDA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP

GO:0006828 "manganese ion transport" evidence=IMP

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb01g020570.1 hypothetical protein (541 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	1e-132
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-16
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-15
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-07
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.002
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.003

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score =  385 bits (990), Expect = e-132
 Identities = 151/322 (46%), Positives = 198/322 (61%), Gaps = 23/322 (7%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLL-VMNNNNSNNIIE 59
           WRI++ FGA+P     Y+R+ +PETP YTA  A +  +A+ D S +L V      + + +
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEK 262

Query: 60  QVQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQ 119
              AV+                 K      F+  F  RHG HLLGTA +W LLD++++  
Sbjct: 263 ASTAVEV---------------PKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307

Query: 120 NLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179
           NL QK I +A+G+ P A T  A +EL+  A    ++AL G +PGYW+TV L+DIIGR  I
Sbjct: 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367

Query: 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239
           QL+GFF +TV    L   Y+H        GF+ +Y L  FFANFGPN+TTFIVP E+FP 
Sbjct: 368 QLMGFFILTVLFFVLGFAYNHLSTH----GFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423

Query: 240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL 299
           R+RST HGISAA+GKAGAIIG FGFLY AQ  D +K   GYP GI + + L + A    L
Sbjct: 424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK---GYPTGIWMGHVLEIFALFMFL 480

Query: 300 GLLFTFLVPEPNGRSLEEISGE 321
           G+LFT L+PE  G+SLEE+SGE
Sbjct: 481 GILFTLLIPETKGKSLEELSGE 502

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 67/333 (20%), Positives = 113/333 (33%), Gaps = 69/333 (20%)

Query: 1   WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQ 60
           WRI L    +P        + +PE+P +  L                          +E+
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVL-----------------------KGKLEE 205

Query: 61  VQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVS----- 115
            +AV  +   + G +D D + ++       S    +   L L    +    L +      
Sbjct: 206 ARAVLAK---LRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQI 262

Query: 116 ------YFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVI 169
                   +   +   IF  +G L  +  +  +  + NF    T +A+            
Sbjct: 263 FQQLTGINAIFYYSPTIFETLG-LSDSLLVTIIVGVVNF--VFTFIAI-----------F 308

Query: 170 LIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANF--GPNS 227
           L+D  GR  + L+G   M +  L L +     + K    G V +  +  F A F  G   
Sbjct: 309 LVDRFGRRPLLLLGAAGMAICFLVLGVAL-LGVAKSKGAGIVAIVFILLFIAFFALGWGP 367

Query: 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIK 287
             +++ +E+FP   R     I+ AA      +  F F                   +   
Sbjct: 368 VPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITG---------AIGGYVF-- 416

Query: 288 NTLFLLAAVNVLGLLFTFL-VPEPNGRSLEEIS 319
               + A + VL +LF F  VPE  GR+LEEI 
Sbjct: 417 ---LVFAGLLVLFILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 166 ITVILIDIIGRVTIQLIGFFFMTVFMLALAIP---YHHWIQKHNSTGFVVMYALTFFFAN 222
           + + L+D  GR  + LIG   M + +  L I    +     K +    +V   L   F  
Sbjct: 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA 397

Query: 223 FGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPA 282
            G     +++ +EIFP   R     I+ AA      I  F F    +             
Sbjct: 398 MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE------------- 444

Query: 283 GIGIKNTLFLLAAVNVLGLLFT-FLVPEPNGRSLEEI 318
            IG+         +NVLGL+F  F +PE  GR+LEEI
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 26/200 (13%)

Query: 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVI 169
           LLL +++F  +      +  + +LP                  +L  L G I G  +  +
Sbjct: 178 LLLALAFFLLSFG---YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGG-ILGALLGGL 233

Query: 170 LIDIIGR-VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228
           L D +GR   + LIG     + +L LA+     +        +++  L   F        
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL--------LLVALLLLGFGLGFAFPA 285

Query: 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKN 288
              + +E+ P   R T  G+    G  G  +G                        G   
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-------------TGGYGG 332

Query: 289 TLFLLAAVNVLGLLFTFLVP 308
              +LAA+ +L  L   L+P
Sbjct: 333 VFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 25/159 (15%)

Query: 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI--PYHHWIQKHNSTGFVVMYALTF 218
           +P   IT++LID +GR            V +L L       ++++       + +     
Sbjct: 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRT-----ALAVLGKFG 423

Query: 219 FFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278
             + F      ++  AE++P   R+   G+ +   + G+II  F  +Y  +         
Sbjct: 424 ITSAF---QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF-LVYLGE------KWL 473

Query: 279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEE 317
             P        L L   + +L  + T  +PE  G  L E
Sbjct: 474 FLP--------LVLFGGLALLAGILTLFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 36/169 (21%)

Query: 167 TVILI---DIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANF 223
           TV+ I   D  GR  +Q+IG   M + M +L   ++       +   ++ Y    F  ++
Sbjct: 323 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV-AAFAMSW 381

Query: 224 GPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL--------YAAQDQDKSK 275
           GP    +++ +EIFP   R          GKA AI  A  ++        +   D++   
Sbjct: 382 GP--VCWVLLSEIFPNAIR----------GKALAIAVAAQWIANYFVSWTFPMMDKNSWL 429

Query: 276 AD---PGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEISG 320
                 G+   I           + VL  LF +  VPE  G++LEE+  
Sbjct: 430 VAHFHNGFSYWI--------YGCMGVLAALFMWKFVPETKGKTLEEMEA 470

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 61/266 (22%), Positives = 93/266 (34%), Gaps = 49/266 (18%)

Query: 1   WRIVLMFGAL-PIAFTYYWRMKMPETPHYTALGAMNAGKASEDF--SKLLVMNNNNSNNI 57
           WR +   G + P+         +PE               S DF  SK         N I
Sbjct: 170 WRSLFYVGGIAPLLLLLLLMRFLPE---------------SIDFLVSKRPETVRRIVNAI 214

Query: 58  IEQVQAVDQRNDVVCGAADHDDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYF 117
             Q+QA  Q       A       K+ +   LF    AR             +LL + YF
Sbjct: 215 APQMQAEAQSALPEQKA---TQGTKRSVFKALFQGKTARIT-----------VLLWLLYF 260

Query: 118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVAL--CGLIPGYWITVILIDIIG 175
              +    ++    WLP       ++  F+ + A T  AL   G + G  I   L D +G
Sbjct: 261 MLLVG---VYFLTNWLPKL----MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLG 313

Query: 176 RVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235
                 +      VF + +           + T  +++ A+  FF N G  S  + + A 
Sbjct: 314 PRVT-ALLLLLGAVFAVLVGSTLF------SPTLLLLLGAIAGFFVN-GGQSGLYALMAL 365

Query: 236 IFPARFRSTCHGISAAAGKAGAIIGA 261
            +P   R+T  G +   G+ GAIIG 
Sbjct: 366 FYPTAIRATGVGWAIGIGRLGAIIGP 391

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYA 215
            L G+  G      L D IGR  + L      +VF L  A+          +T    +  
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL----------ATNVTQLLI 110

Query: 216 LTFFFANFG-----PNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262
           L  F A  G     PN    +  +E  P RFR T  G+       GA +G F
Sbjct: 111 LR-FLAGLGLGGLMPNLNALV--SEYAPKRFRGTAVGLMFCGYPIGAAVGGF 159

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.97
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
TIGR00898	505	2A0119 cation transport protein.	99.92
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.89
PRK10642	490	proline/glycine betaine transporter; Provisional	99.88
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.82
PRK09952	438	shikimate transporter; Provisional	99.8
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.79
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.74
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.74
PRK11663	434	regulatory protein UhpC; Provisional	99.74
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.73
PRK12307	426	putative sialic acid transporter; Provisional	99.73
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.73
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.73
TIGR00891	405	2A0112 putative sialic acid transporter.	99.72
PRK10489	417	enterobactin exporter EntS; Provisional	99.7
PRK03893	496	putative sialic acid transporter; Provisional	99.69
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.69
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.68
TIGR00893	399	2A0114 d-galactonate transporter.	99.68
PRK15075	434	citrate-proton symporter; Provisional	99.67
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.67
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.67
TIGR00895	398	2A0115 benzoate transport.	99.66
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.65
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.65
TIGR00891	405	2A0112 putative sialic acid transporter.	99.65
PRK11663	434	regulatory protein UhpC; Provisional	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
PRK03545	390	putative arabinose transporter; Provisional	99.63
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.63
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.62
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.62
TIGR00895	398	2A0115 benzoate transport.	99.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.62
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.61
PRK11010	491	ampG muropeptide transporter; Validated	99.61
PRK09705	393	cynX putative cyanate transporter; Provisional	99.6
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.6
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.59
PRK12307	426	putative sialic acid transporter; Provisional	99.59
PLN00028	476	nitrate transmembrane transporter; Provisional	99.59
TIGR00893	399	2A0114 d-galactonate transporter.	99.58
KOG2533	495	consensus Permease of the major facilitator superf	99.58
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.58
PLN00028	476	nitrate transmembrane transporter; Provisional	99.58
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.58
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.57
PRK10504	471	putative transporter; Provisional	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.57
PRK03545	390	putative arabinose transporter; Provisional	99.57
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.57
KOG2532	466	consensus Permease of the major facilitator superf	99.57
PRK03893	496	putative sialic acid transporter; Provisional	99.56
PRK03699	394	putative transporter; Provisional	99.56
PRK03699	394	putative transporter; Provisional	99.56
PRK10091	382	MFS transport protein AraJ; Provisional	99.56
PRK10054	395	putative transporter; Provisional	99.56
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.56
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.55
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.55
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.55
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.53
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.53
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.53
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.53
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.53
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.52
TIGR00900	365	2A0121 H+ Antiporter protein.	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.5
PRK09874	408	drug efflux system protein MdtG; Provisional	99.49
PRK15075	434	citrate-proton symporter; Provisional	99.49
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.49
PRK12382	392	putative transporter; Provisional	99.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.48
PRK12382	392	putative transporter; Provisional	99.48
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.48
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.48
PRK11043	401	putative transporter; Provisional	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.46
PRK09952	438	shikimate transporter; Provisional	99.45
PRK11902	402	ampG muropeptide transporter; Reviewed	99.45
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.45
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.44
TIGR00898	505	2A0119 cation transport protein.	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.44
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.44
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.44
PRK09705	393	cynX putative cyanate transporter; Provisional	99.43
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.41
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.41
TIGR00901	356	2A0125 AmpG-related permease.	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.38
PRK10091	382	MFS transport protein AraJ; Provisional	99.38
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.38
PRK10504	471	putative transporter; Provisional	99.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.37
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.37
TIGR00805	633	oat sodium-independent organic anion transporter.	99.36
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.36
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.34
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.34
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.34
PRK11043	401	putative transporter; Provisional	99.34
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.33
PRK10133	438	L-fucose transporter; Provisional	99.32
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.32
PRK03633	381	putative MFS family transporter protein; Provision	99.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.31
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.31
PRK11902	402	ampG muropeptide transporter; Reviewed	99.31
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.3
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.3
KOG2532	466	consensus Permease of the major facilitator superf	99.3
KOG2615	451	consensus Permease of the major facilitator superf	99.29
PTZ00207	591	hypothetical protein; Provisional	99.29
KOG0569	485	consensus Permease of the major facilitator superf	99.27
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.26
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.25
TIGR00901	356	2A0125 AmpG-related permease.	99.25
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.25
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.25
PRK10133	438	L-fucose transporter; Provisional	99.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.25
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.23
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
PRK09528	420	lacY galactoside permease; Reviewed	99.21
KOG0254	513	consensus Predicted transporter (major facilitator	99.21
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.21
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.21
PRK10054	395	putative transporter; Provisional	99.19
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.19
PRK15011	393	sugar efflux transporter B; Provisional	99.19
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.19
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.16
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.15
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.13
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.12
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.12
KOG2533	495	consensus Permease of the major facilitator superf	99.12
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.11
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.1
PF13347	428	MFS_2: MFS/sugar transport protein	99.1
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.1
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.09
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.08
PRK09848	448	glucuronide transporter; Provisional	99.07
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.05
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.05
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.03
COG2211	467	MelB Na+/melibiose symporter and related transport	99.02
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.0
PRK11462	460	putative transporter; Provisional	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.99
PRK09669	444	putative symporter YagG; Provisional	98.99
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.96
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.91
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.76
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.73
PRK09669	444	putative symporter YagG; Provisional	98.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.63
TIGR00805	633	oat sodium-independent organic anion transporter.	98.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.62
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.61
PF13347	428	MFS_2: MFS/sugar transport protein	98.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.56
PRK10429	473	melibiose:sodium symporter; Provisional	98.55
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.53
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.51
KOG2563	480	consensus Permease of the major facilitator superf	98.51
KOG3762	618	consensus Predicted transporter [General function	98.47
KOG2563	480	consensus Permease of the major facilitator superf	98.47
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.44
PTZ00207	591	hypothetical protein; Provisional	98.44
KOG3626	735	consensus Organic anion transporter [Secondary met	98.39
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.38
PRK11462	460	putative transporter; Provisional	98.38
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.35
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.34
KOG2615	451	consensus Permease of the major facilitator superf	98.2
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.15
COG2211	467	MelB Na+/melibiose symporter and related transport	98.12
PRK09848	448	glucuronide transporter; Provisional	98.08
PF12832	77	MFS_1_like: MFS_1 like family	98.02
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.88
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.88
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.62
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.58
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.57
COG0477	338	ProP Permeases of the major facilitator superfamil	97.41
KOG3626	735	consensus Organic anion transporter [Secondary met	97.38
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.21
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.13
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.12
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.09
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.91
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.88
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.69
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.6
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.54
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.52
KOG0637	498	consensus Sucrose transporter and related proteins	96.38
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.29
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.23
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.22
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.07
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.05
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.95
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.75
KOG3762	618	consensus Predicted transporter [General function	95.64
PRK03612	521	spermidine synthase; Provisional	95.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.18
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.08
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.03
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.93
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.7
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.08
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.28
COG3202	509	ATP/ADP translocase [Energy production and convers	92.93
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.14
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	89.63
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.46
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.98
KOG3097	390	consensus Predicted membrane protein [Function unk	85.55
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	85.18
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	83.53
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.1
KOG3810	433	consensus Micronutrient transporters (folate trans	81.56

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.6e-33  Score=243.65  Aligned_cols=287  Identities=21%  Similarity=0.281  Sum_probs=223.0

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      |++.+.+.++|+++.++..+++|||||||...+++++||++.++++++.++ ++++.+++.++.+++         +..+
T Consensus       183 W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~-~~~~~e~~~~e~~~~---------~~~~  252 (485)
T KOG0569|consen  183 WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKED-VEAEIEEMLREIEEE---------ELEK  252 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHh---------cccc
Confidence            899999999999999999999999999994446777778788877776552 223333333333331         1111


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +++.+.+++++++..|+.  ..+.+.+....+..+.+....|...++++.|+++.+            +...+....+..
T Consensus       253 ~~~~sl~~~~~~~~lR~~--~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------------a~~an~~~g~v~  318 (485)
T KOG0569|consen  253 KKQISLRQLLKNPTLRRP--LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE------------AQYANLGIGIVN  318 (485)
T ss_pred             ccCCcHHHHhcCcchhHH--HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHH
Confidence            356678899999888775  444455555566778888889999999999988865            555777788888


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchh--hHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNST--GFVVMYALTFFFANFGPNSTTFIVPAEIFP  238 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  238 (338)
                      ++.++++.++.||+|||++++.+..++.++.+++..............  ..+...+.....+..|..|++|.+.+|++|
T Consensus       319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~  398 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP  398 (485)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence            889999999999999999999999999988888776553221111111  223444555667788889999999999999


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhh
Q 036040          239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEE  317 (338)
Q Consensus       239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~  317 (338)
                      ++.|+.++++....+++.+++..+.++.+.             +..|- ..|+++.+.++++.++.+ ++||||+|+..|
T Consensus       399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~-------------~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQ-------------NVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence            999999999999999999999999999997             56665 678888888888888888 999999999999


Q ss_pred             hhhhhhhh
Q 036040          318 ISGEIEEC  325 (338)
Q Consensus       318 ~~~~~~~~  325 (338)
                      +.++.++.
T Consensus       465 I~~~~~~~  472 (485)
T KOG0569|consen  465 IIEELEKR  472 (485)
T ss_pred             HHHHHHhC
Confidence            88877655

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.1e-31  Score=241.92  Aligned_cols=298  Identities=49%  Similarity=0.902  Sum_probs=194.3

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCCh-hhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNA-GKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD   79 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (338)
                      ||++|.++++|+++.++.++++||||||| ..++++ +++.+.+.+..+.+..++   .+|.++.++          +++
T Consensus       203 WR~~~~~~~ip~~i~~~~~~~lpESpr~l-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~----------~~~  268 (502)
T TIGR00887       203 WRILIGFGAVPALLALYFRLTIPETPRYT-ADVAKDVEQAASDMSAVLQVKIEAE---PDEVEKAST----------AVE  268 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHhCcchHHHHHHHHHHhccccccC---cccccchhc----------ccc
Confidence            99999999999999888889999999997 444443 445655665554321111   111111111          000


Q ss_pred             cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040           80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCG  159 (338)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
                       ..+.+++++++++..++..+..+.....+++..+.+|+...+.|.++++.|+++...+...+............+..++
T Consensus       269 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (502)
T TIGR00887       269 -VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAG  347 (502)
T ss_pred             -chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence             1123466777655445544455555566666777889999999999999998765422211111121222234455667


Q ss_pred             cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040          160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA  239 (338)
Q Consensus       160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  239 (338)
                      .+++.+++++++||+|||++++++..++++++.+++......    +.........+...+...+..+..+.+.+|++|+
T Consensus       348 ~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            778889999999999999999888877777766665433110    1111122222222333455667788889999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhhhh
Q 036040          240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEIS  319 (338)
Q Consensus       240 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  319 (338)
                      +.|+++.|+.+.+++++++++|.+.+.+.+...+   ..+++...++...|++++++++++.+..+++|||++++++|++
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~  500 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP---TKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELS  500 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc---cccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhh
Confidence            9999999999999999999999999998741100   0000113456677888888888877766788999999988765


Q ss_pred             h
Q 036040          320 G  320 (338)
Q Consensus       320 ~  320 (338)
                      +
T Consensus       501 ~  501 (502)
T TIGR00887       501 G  501 (502)
T ss_pred             C
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.3e-29  Score=214.19  Aligned_cols=291  Identities=56%  Similarity=1.019  Sum_probs=233.4

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||..|.++.+|+++.++.++.+|||+||.++..++.+.+.+...+....      +++++             ++.+...
T Consensus       224 WRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~------~~~~~-------------~~~~~~~  284 (538)
T KOG0252|consen  224 WRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV------DIEAE-------------STAESDV  284 (538)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc------ccchh-------------hccccCC
Confidence            9999999999999999999999999999877776655554322222111      11110             0111112


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +.+.+...+|.....+++.+.++.....||..-+.+|+...+...++++.|+.+....+   +..+..+....++...+.
T Consensus       285 ~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~  361 (538)
T KOG0252|consen  285 PPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCST  361 (538)
T ss_pred             CCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHcc
Confidence            23334445666666666778899999999999999999999999999999999877333   455566777888888999


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR  240 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  240 (338)
                      ++|..+..+++|++|||++.+.+.+++++..+.++.....   ..+....+++..+..++..+|+......+.+|.||++
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            9999999999999999999999999999998888877643   2255666777778888889999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhhhhh
Q 036040          241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISG  320 (338)
Q Consensus       241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  320 (338)
                      .|+++.|+..+.+-+|++++...+..+.+..        ++...+.+.++++++++++++.+..+++|||++++++|++.
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--------yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~  510 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHN--------YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISN  510 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhcc--------CCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcC
Confidence            9999999999999999999999999997421        34578899999999999999999999999999999999866


Q ss_pred             hhhh
Q 036040          321 EIEE  324 (338)
Q Consensus       321 ~~~~  324 (338)
                      +.+.
T Consensus       511 e~~~  514 (538)
T KOG0252|consen  511 EEES  514 (538)
T ss_pred             hhhc
Confidence            5543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.9e-27  Score=194.52  Aligned_cols=287  Identities=20%  Similarity=0.315  Sum_probs=196.9

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhc---cccccCCCCC
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQR---NDVVCGAADH   77 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   77 (338)
                      |||..+..++|..+...+.+++||||||+ +.++++++|.+.++++.+.|+.+-+.-..+...++++   ..-.+..+..
T Consensus       229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~  307 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAARFLVWVYESPRFY-LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS  307 (528)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhcccCcchh-hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence            89999998899989999999999999998 8889999999999999999986544322221111110   0000111111


Q ss_pred             CCcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHcc---C----CCCCCCCC-hhhhHHHHH
Q 036040           78 DDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVG---W----LPAAHTMG-ALDELFNFA  149 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~----~~~~~~~~-~~~~~~~~~  149 (338)
                      ..++......+++..+..++    .+..+.+||.+.+.||+...+...+.+.-+   .    .+.+.... ...-+....
T Consensus       308 a~ke~rg~~~nLlsp~lrkt----tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d  383 (528)
T KOG0253|consen  308 AAKEVRGGTTNLLSPKLRKT----TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD  383 (528)
T ss_pred             cccccccchHhhcChHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence            11223344556665544443    477788889999999999888877766522   1    11111110 001111234


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      +.-..+..+..++|.++.+++.||+|||+.+..++++++++.+++.....       ........+..-. +..+.+.+.
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-------rn~~tvllf~ara-fisg~fqva  455 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-------RNAYTVLLFTARA-FISGAFQVA  455 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-------cchhHHHHHHHHH-HHhchheEE
Confidence            45566778889999999999999999999999999988888887766552       2222222222222 333445678


Q ss_pred             eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc-
Q 036040          230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP-  308 (338)
Q Consensus       230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  308 (338)
                      |+|..|++|+..|+++.|.+...+++|+++.|++.  +.             ...+-..+..+++++++++.+...++| 
T Consensus       456 YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~-------------~e~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  456 YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MR-------------AELSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HH-------------hccceeehHHHHHHHHHHHHHHheeeee
Confidence            99999999999999999999999999999999998  32             233444556678888888888888555 


Q ss_pred             cCCCCCh
Q 036040          309 EPNGRSL  315 (338)
Q Consensus       309 e~~~~~~  315 (338)
                      ||++|+.
T Consensus       521 EtkGR~l  527 (528)
T KOG0253|consen  521 ETKGRSL  527 (528)
T ss_pred             ccCCCCC
Confidence            9999864

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=5.6e-28  Score=224.70  Aligned_cols=288  Identities=16%  Similarity=0.263  Sum_probs=191.9

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCc-h-hH---HHHHhhhhccccccCCC
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSN-N-II---EQVQAVDQRNDVVCGAA   75 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~   75 (338)
                      ||+++++.++++++.+++++++||||+|| ..+++.+++.+.++++.+.|.+... + ..   ++++....+.+..+..+
T Consensus       333 WR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (742)
T TIGR01299       333 WRVFVIVCAFPCVFAIGALTFMPESPRFF-LENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES  411 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccc
Confidence            89999999999998888889999999998 7778889999999998877654221 1 11   11111111000000000


Q ss_pred             CCCC------ccc---c----cchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHc------------
Q 036040           76 DHDD------DDK---K----GISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAV------------  130 (338)
Q Consensus        76 ~~~~------~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  130 (338)
                      +.+.      ...   .    .+++++|+++.    .+.++.++++|++..+.+|++..|+|.++++.            
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~----~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~  487 (742)
T TIGR01299       412 DTGTWYQRCFVRALSEGGGIWGNFLRCFNPEV----REITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNF  487 (742)
T ss_pred             cccchhhcchhhhhhhhhhHHHHHHHHcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            0000      000   0    02333444433    33568888889999999999999999987653            


Q ss_pred             ----------cCCCCC-------------CCC-----------------------------C------------------
Q 036040          131 ----------GWLPAA-------------HTM-----------------------------G------------------  140 (338)
Q Consensus       131 ----------g~~~~~-------------~~~-----------------------------~------------------  140 (338)
                                +++...             .++                             +                  
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  567 (742)
T TIGR01299       488 PGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFI  567 (742)
T ss_pred             cccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhh
Confidence                      000000             000                             0                  


Q ss_pred             --------------hhh-------hHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040          141 --------------ALD-------ELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH  199 (338)
Q Consensus       141 --------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                                    .+.       ...........+..++.++|.+++|+++||+|||++++++.++.+++++++++...
T Consensus       568 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s  647 (742)
T TIGR01299       568 DSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS  647 (742)
T ss_pred             hhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence                          000       00012344566677888999999999999999999999998888888777665431


Q ss_pred             hcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 036040          200 HWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPG  279 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  279 (338)
                             ... ++++.++.+++..+..+..+++++|++|++.|++++|+.++.+++|++++|.+.+.+..          
T Consensus       648 -------~~~-ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------  709 (742)
T TIGR01299       648 -------ESA-MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------  709 (742)
T ss_pred             -------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence                   122 22223333444445566788899999999999999999999999999999999998762          


Q ss_pred             CCCCcchHHHHHHHHHHHHHhHhheeecccCCCCCh
Q 036040          280 YPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL  315 (338)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  315 (338)
                          .+...+|++.+++.+++.++.+++|||+++.+
T Consensus       710 ----~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       710 ----ITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence                24567788888887777777778899988753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1.4e-24  Score=198.34  Aligned_cols=287  Identities=21%  Similarity=0.305  Sum_probs=202.9

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||+++.+..+|+++..+..+++||||||| .++++.+++++.+.+.++.+   +++.+++.++++.+.  ..+...   .
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~~l~~l~g~~---~~~~~~~~~~~~~~~--~~~~~~---~  278 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKRSLKRLRGLS---PEDVEVELELLKIKL--LVEAEV---A  278 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHHHHHHHhCCC---CcchHHHHHHHHHHH--HHhhhc---c
Confidence            99999999999999887788899999998 66777788888888888744   233333333333110  000000   0


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +.+..+.+++.+...++   .++...+..+.+..+++....|.+.++++.|.....             .....+..+..
T Consensus       279 ~~~~~~~~l~~~~~~~~---~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------------~~~~~~~~~v~  342 (513)
T KOG0254|consen  279 EGKASWGELFSPKVRKR---LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------------FLASIILGVVN  342 (513)
T ss_pred             cccccHHHhcCcchHHH---HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------------HHHHHHHHHHH
Confidence            11112344444222222   455666667777788899999999999998876542             22555666667


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc-----cchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK-----HNSTGFVVMYALTFFFANFGPNSTTFIVPAE  235 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  235 (338)
                      +++..++.++.||+|||++++.+...+.+++++++........+     ......+....+....+..+..+++|.+.+|
T Consensus       343 ~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE  422 (513)
T KOG0254|consen  343 FLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE  422 (513)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence            77777889999999999999999999999999888765432221     2234444555566667778888999999999


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHh-hee-ecccCCCC
Q 036040          236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLL-FTF-LVPEPNGR  313 (338)
Q Consensus       236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~  313 (338)
                      .+|.+.|+++.++....++..+.+....+.....             ..+....|..++..+.+..+ +.+ ++|||+++
T Consensus       423 ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~-------------~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  423 IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE-------------ALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------hccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            9999999999999999999988888777777752             22234556666666666666 555 99999999


Q ss_pred             Chhhhhhhhhhh
Q 036040          314 SLEEISGEIEEC  325 (338)
Q Consensus       314 ~~~~~~~~~~~~  325 (338)
                      +.+|+++..+..
T Consensus       490 sleei~~~~~~~  501 (513)
T KOG0254|consen  490 TLEEINELFEEG  501 (513)
T ss_pred             cHHHHHHHHHcC
Confidence            999988766544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=1.7e-29  Score=228.02  Aligned_cols=278  Identities=27%  Similarity=0.413  Sum_probs=186.6

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||+.+.++++++++.++..+++||||||| ..+++.+|+++.+++..+.+ .++++.+++.++.++            .+
T Consensus       170 Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~------------~~  235 (451)
T PF00083_consen  170 WRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKE-IEDEEIEEIKAEKKE------------SQ  235 (451)
T ss_pred             cccccccccccccccccccccccccccee-cccccccccccccccccccc-ccccccccccccccc------------cc
Confidence            99999999999998888889999999998 77777788888887744332 222222222222211            00


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +.+..+.++++++..++.  ..+...+..+....+++....+.+.+.++.|.++..              .......+..
T Consensus       236 ~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~  299 (451)
T PF00083_consen  236 ESKASWRDLFRNKKYRKR--LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSF--------------LATLILGLVN  299 (451)
T ss_pred             ccceeeeecccccccccc--cccccccccccccccccccccccccccccccccccc--------------cccccccccc
Confidence            111456666666543221  223333333333445556667777777777766651              1344455666


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc--chhhHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH--NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP  238 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  238 (338)
                      +++.+++.+++||+|||++++.+..+++++.+.++..........  .....+....+...+...+..+..+.+++|++|
T Consensus       300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfP  379 (451)
T PF00083_consen  300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFP  379 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence            677778889999999999999998888877776651111111110  122223333333445555777888899999999


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhh
Q 036040          239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEE  317 (338)
Q Consensus       239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~  317 (338)
                      ++.|+++.|+....+++++++++.+.+.+.             +..+....+.++++++++..+..+ ++|||++++++|
T Consensus       380 t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~-------------~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e  446 (451)
T PF00083_consen  380 TKVRSTGIGLSYAVGRIGGFIIPFLFPYLF-------------NNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE  446 (451)
T ss_pred             cccccccccccccccccccccccccccccc-------------ccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence            999999999999999999999999988886             344434556677777777777766 999999999999


Q ss_pred             hhhh
Q 036040          318 ISGE  321 (338)
Q Consensus       318 ~~~~  321 (338)
                      ++++
T Consensus       447 i~~~  450 (451)
T PF00083_consen  447 IQEM  450 (451)
T ss_pred             HHhh
Confidence            8764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=5.1e-24  Score=195.13  Aligned_cols=263  Identities=19%  Similarity=0.265  Sum_probs=175.3

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||+.|++.+++.++..+..+++||||+|+ ..+++.+++.+.+++..+.|+.+..+...+....++        .+  ..
T Consensus       242 wr~~~~~~~i~~~~~~~~~~~~~esp~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~  310 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLSWFVPESPRWL-ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD--------LS--SS  310 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhh--------hh--hc
Confidence            99999999998888777778899999997 666777788888888777665432211111100000        00  00


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +++.+.+++++++..+.   ..+...+.++.....+|+...+.+.+    +.+               .........+..
T Consensus       311 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------~~~~~~~~~~~~  368 (505)
T TIGR00898       311 KKQYSFLDLFRTPNLRK---TTLCLMMLWFTTAFSYYGLVLDLGNL----GGN---------------IYLDLFISGLVE  368 (505)
T ss_pred             cCCCcHHHHhCChHHHH---HHHHHHHHHHHHHHHHHHHhcccccc----CCC---------------hHHHHHHHHHHH
Confidence            11335566776655544   34444555666666677666655432    211               112334456677


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR  240 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  240 (338)
                      +++.++.++++||+|||+.+.++.++++++++++.+...      ..........++..++..+..+..+.+.+|.+|++
T Consensus       369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            788889999999999999999988887777666654431      11122222222233333334456678899999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhh
Q 036040          241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEE  317 (338)
Q Consensus       241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  317 (338)
                      .|++++|+.++.+.+|++++|.+.+ +.              ..++..++.+++++.+++.+..+++|||++++++|
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LG--------------EKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HH--------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            9999999999999999999999988 43              34566778888888888877777899999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=1.6e-22  Score=184.02  Aligned_cols=279  Identities=20%  Similarity=0.279  Sum_probs=172.4

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||++|++.+++.++.++..+++||||+|+ ..+++.+++.+..++..+.+     +.+++.++..+.   .+    +   
T Consensus       193 Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~----~---  256 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLLYFVPETPRYL-MSRGKQEQAEGILRKIMGNT-----LATQALQEIKHS---LD----H---  256 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHcCCHHHHHHHHHHHcCCh-----hHHHHHHHHHHH---HH----H---
Confidence            99999998888888777778899999996 44445555544444433211     111111111110   00    0   


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      +.. .....+.    ..............+.....++....+.|.+.++.|++...            +........+..
T Consensus       257 ~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~------------~~~~~~~~~~~~  319 (479)
T PRK10077        257 GRK-TGGKLLM----FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDI------------ALLQTIIVGVIN  319 (479)
T ss_pred             hhh-hhhhhcc----hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCch------------HHHHHHHHHHHH
Confidence            000 0000000    00001111222223334445566667788888888877643            333555566777


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR  240 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  240 (338)
                      +++.+++++++||+|||++++.+.++++++.+++......   ............+...+...+..+..+.+++|.+|++
T Consensus       320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  396 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  396 (479)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence            8889999999999999999999988888777766543311   0011112222222222233334466788999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-CCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhh
Q 036040          241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY-PAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEI  318 (338)
Q Consensus       241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~  318 (338)
                      .|++++|+.+..+++++++++.+.+.+.+        +++ .+..++...|+++++.++++.++.+ +.||+++++.+|.
T Consensus       397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  468 (479)
T PRK10077        397 IRGKALAIAVAAQWIANYFVSWTFPMMDK--------NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM  468 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHh--------ccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence            99999999999999999999888876541        000 1356777788888877777777666 7899999988877


Q ss_pred             hhhhh
Q 036040          319 SGEIE  323 (338)
Q Consensus       319 ~~~~~  323 (338)
                      ++..+
T Consensus       469 ~~~~~  473 (479)
T PRK10077        469 EALWE  473 (479)
T ss_pred             HHHHh
Confidence            65554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.89  E-value=1.5e-21  Score=177.53  Aligned_cols=281  Identities=22%  Similarity=0.376  Sum_probs=175.6

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||++|++.+++.++.++..+++||+|+++ ..+++.+++.+...+..+.++ +..+..++....+...+ .+  .+    
T Consensus       195 w~~~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~----  265 (481)
T TIGR00879       195 WRIPLGLQLIPAGLLFLGLFFLPESPRWL-VGKGRVEEARKSLARLRGTSG-EDKELLDELELIDIKRS-IE--KR----  265 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCChHHH-HHcCChHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHH-HH--Hh----
Confidence            89999998777777777778899999985 444444443333333322221 11111111111111000 00  00    


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      ..+..+.+.++... +...+.++...+.++......+....+.|.+.++.|++...            +........++.
T Consensus       266 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~  332 (481)
T TIGR00879       266 SVQPSWGSLFSSTR-RIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------------AFLVSIIVGAVN  332 (481)
T ss_pred             hccccHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------------HHHHHHHHHHHH
Confidence            00111222222111 01122344444444555555666677888888888877743            444666777788


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF  237 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  237 (338)
                      +++.+++|+++||+|||+.+..+.++++++.+++.+........   ...........+...+...+..+....++.|.+
T Consensus       333 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (481)
T TIGR00879       333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF  412 (481)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccC
Confidence            88999999999999999999888777777666665322111111   012223333334444445555677778889999


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChh
Q 036040          238 PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLE  316 (338)
Q Consensus       238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~  316 (338)
                      |++.|++++|+.+...++|+++++.+.+.+.             +..+|...|++.+++++++.+..+ +.||+++++.+
T Consensus       413 p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~-------------~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       413 PLSLRPKGISIAVAANWLANFIVGFLFPTML-------------ESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            9999999999999999999999999999987             456788888888888888777766 78888876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.88  E-value=8.6e-22  Score=179.30  Aligned_cols=246  Identities=16%  Similarity=0.181  Sum_probs=146.6

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||++|+++++++++.++++..+||||+|+  ..+++.+..      . .+            .. .             +
T Consensus       191 WR~~f~i~~~~~l~~~~~~~~~~esp~~~--~~~~~~~~~------~-~~------------~~-~-------------~  235 (490)
T PRK10642        191 WRIPFFIALPLGIIGLYLRHALEETPAFQ--QHVDKLEQG------D-RE------------GL-Q-------------D  235 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCChhHH--HHHHhhhhh------c-cc------------cc-c-------------c
Confidence            99999998887777777777899999984  211110000      0 00            00 0             0


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG  159 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
                      +++.++++++++     .++.++......++....+|+...|.|.++++ .|++...            +........++
T Consensus       236 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~  298 (490)
T PRK10642        236 GPKVSFKEIATK-----HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDH------------GVLIIIAIMIG  298 (490)
T ss_pred             cccCCHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence            111233334332     12223333334445567788888999999865 4665432            33355566777


Q ss_pred             cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040          160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA  239 (338)
Q Consensus       160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  239 (338)
                      .+++.+++|+++||+|||+.++.+.++..+..+.+.....    . +....+....++.++......+....+++|.+|+
T Consensus       299 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~  373 (490)
T PRK10642        299 MLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN----S-NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT  373 (490)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            8888999999999999999888776543332222111110    0 1112222222222221111223344567899999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCCh
Q 036040          240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL  315 (338)
Q Consensus       240 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  315 (338)
                      +.|++++|+.+..+.+++.++|.+.+++.+            ...+|..++++..++++++++..+++||++++..
T Consensus       374 ~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~------------~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        374 HIRYSALAAAFNISVLVAGLTPTLAAWLVE------------STQNLMMPAYYLMVVAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            999999999877788888899999998873            2234565665666666666666667799876543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=9.8e-19  Score=160.69  Aligned_cols=273  Identities=19%  Similarity=0.239  Sum_probs=178.4

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCc--hhHHHHHhhhhccccccCCCCCC
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSN--NIIEQVQAVDQRNDVVCGAADHD   78 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   78 (338)
                      ||+.+++..+++++.++++++.||||||+ ..+++.+++.+.+++..+.|+...+  +..++....++        ++..
T Consensus       233 Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl-~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~--------~~~~  303 (521)
T KOG0255|consen  233 WRWLFWIISIPSGLFLLLWFLPPESPRWL-LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP--------LKLL  303 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcChHHH-HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhH--------hhhh
Confidence            99999999999998888777778999998 6777778888888888877632221  11111111111        1111


Q ss_pred             CcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040           79 DDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALC  158 (338)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
                      +.+.+..+.++++.+..++   .++...+.++.....+|+.......+    |.+.               .........
T Consensus       304 ~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~~~~~y~gl~~~~~~l----g~~~---------------~~~~~~~~~  361 (521)
T KOG0255|consen  304 FTEPKISFLDLFRTPRLRY---RTLYLLFIWFVFSLVYYGLSLNVSGL----GGNI---------------YLNFTLSGL  361 (521)
T ss_pred             ccCCCCchhhhhcCHHHHH---HHHHHHHHHHHHhHHHHhhhhhhhhc----CchH---------------HHHHHHHHH
Confidence            1123345677777765444   45666667777777888776544321    1111               112333333


Q ss_pred             ccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040          159 GLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP  238 (338)
Q Consensus       159 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  238 (338)
                      ...++....+...|+.|||.....+..+..++++..++.....    ......++..+..++...+. ...+.+.+|++|
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~p  436 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL----GGWLHWILPLLGKFFIGSAF-NLIFLYSAELIP  436 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence            6667777888999999999999999999988888888766321    10122222333333333333 344788999999


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe-eecccCCCCChhh
Q 036040          239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT-FLVPEPNGRSLEE  317 (338)
Q Consensus       239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~  317 (338)
                      +..|..+.+.....+.++++++|.+......              ......+.+++..+.+...+. .++|||+++.+.+
T Consensus       437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQ--------------MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence            9999999999999999999999998876641              222223333455555555555 5999999998866


Q ss_pred             hhhhhh
Q 036040          318 ISGEIE  323 (338)
Q Consensus       318 ~~~~~~  323 (338)
                      ..++.+
T Consensus       503 t~~~~~  508 (521)
T KOG0255|consen  503 TLLDAE  508 (521)
T ss_pred             hHHHHH
Confidence            544443

>PRK09952 shikimate transporter; Provisional

Probab=99.80  E-value=1.7e-18  Score=155.47  Aligned_cols=237  Identities=16%  Similarity=0.118  Sum_probs=140.7

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||++|++++++.++.+.++..+||||+|+  .++++.+.                                   .     
T Consensus       198 Wr~~f~~~~~~~l~~~~l~~~~~es~~~~--~~~~~~~~-----------------------------------~-----  235 (438)
T PRK09952        198 WRIPFLFSIVLVLIALWVRNGMEESAEFE--QQQHEQAA-----------------------------------A-----  235 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCChhHH--HHHhhccc-----------------------------------c-----
Confidence            99999999888877777777899999984  21110000                                   0     


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG  159 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
                      +++.+..+.+     +++++.........++....+|....|.|.++++ .|++...            .........+.
T Consensus       236 ~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~------------~~~~~~~~g~~  298 (438)
T PRK09952        236 KKRIPVIEAL-----LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPREL------------FLNIGLLVGGL  298 (438)
T ss_pred             cccCCHHHHH-----HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence            0000111111     1111122223333445556677778888888765 4554421            11123334555


Q ss_pred             cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040          160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA  239 (338)
Q Consensus       160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  239 (338)
                      .+++.++.|+++||+|||+.+..+.++..++...+.....    ..+.....+...+..++......+..+++++|.+|+
T Consensus       299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~  374 (438)
T PRK09952        299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA  374 (438)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            6677889999999999999988776555443332222110    011122222222222222233344566788999999


Q ss_pred             cchhhhHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          240 RFRSTCHGISAAAGK-AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       240 ~~R~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      +.|+++.|+.+..+. +++.++|.+.+.+.+.           ...+|...+...+++.+++.+..+.++|++
T Consensus       375 ~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~-----------~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        375 SYRYSGAGVGYQVASVVGGGFTPFIAAALVTY-----------FGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            999999999877655 7899999999998731           123477777777777777777666666654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.5e-18  Score=146.81  Aligned_cols=243  Identities=16%  Similarity=0.240  Sum_probs=166.3

Q ss_pred             CchhhhhhhHHHHH-HHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040            1 WRIVLMFGALPIAF-TYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD   79 (338)
Q Consensus         1 WR~~f~~~~i~~~i-~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (338)
                      ||..|++.++.+++ .+++++.++|+|+-..+.  .-||                     ..++..+    .  . ++++
T Consensus       184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP--~ie~---------------------~~~d~~e----~--~-~~~~  233 (448)
T COG2271         184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP--PIEE---------------------YRGDPLE----I--Y-EEEK  233 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC--CHHH---------------------hhcCchh----h--h-hhhc
Confidence            89999998887776 566677789999753111  1111                     0000000    0  0 0111


Q ss_pred             cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040           80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALC  158 (338)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
                      ..+.-+.++.|.+-.+++.  .++.+.+..+.....-|++..|.|.|+.+ .|++...            +.......-+
T Consensus       234 ~~~~ls~~~i~~~YVL~Nk--~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------------a~~a~~lfE~  299 (448)
T COG2271         234 ENEGLTAWQIFVKYVLKNK--LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------------ANWAISLFEV  299 (448)
T ss_pred             cCCCccHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------------HHHHHHHHHH
Confidence            1122456666666665553  67788888889999999999999999988 3666644            5557788899


Q ss_pred             ccchhHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeeccc
Q 036040          159 GLIPGYWITVILIDII--GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEI  236 (338)
Q Consensus       159 ~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  236 (338)
                      ++++|++++|+++||+  |||...-+.+.+....+++..     +..++.+.....++....++...|+.-..-....|.
T Consensus       300 agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~-----w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~  374 (448)
T COG2271         300 AGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLY-----WLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEF  374 (448)
T ss_pred             HhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-----HcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            9999999999999996  677655433222222222111     112223345555555666666777766666778999


Q ss_pred             CCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          237 FPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       237 ~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      .|++.-|++.|+...++.+ |+..+....+++.             +.+||...|.++.+.++++.++..
T Consensus       375 ~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~-------------d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         375 VPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA-------------DTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             ccHhhccchhchhhhHHHHhhHHhcCCcceeeE-------------ecCCCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 8888888888887             458999999988888888777665

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.75  E-value=4.4e-17  Score=146.32  Aligned_cols=231  Identities=17%  Similarity=0.179  Sum_probs=128.5

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||++|+++++++++.++++..+||+|++.  .++   +                                          
T Consensus       197 Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~--~~~---~------------------------------------------  229 (432)
T PRK10406        197 WRIPFALGAVLAVVALWLRRQLDETSQQE--TRA---L------------------------------------------  229 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCchHH--Hhh---h------------------------------------------
Confidence            99999999999888777777899998762  100   0                                          


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG  159 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
                      +++.+++++++++   +   ..+......+.....+|+...|.|.++++ .|++..+            ......+..++
T Consensus       230 ~~~~~~~~l~~~~---~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------------~~~~~~i~~~~  291 (432)
T PRK10406        230 KEAGSLKGLWRNR---R---AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANV------------ASGIMTAALFV  291 (432)
T ss_pred             cccccHHHHHhhH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence            0011233333321   1   11222222333456678888899998865 4665432            22234444555


Q ss_pred             cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040          160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA  239 (338)
Q Consensus       160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  239 (338)
                      ..++.++.|+++||+|||+.++++.++.++....+.....   ...+......+..+.... .....+..+.+.+|.+|+
T Consensus       292 ~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~fp~  367 (432)
T PRK10406        292 FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---NVSSPYAAFGLVMCALLI-VSFYTSISGILKAEMFPA  367 (432)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
Confidence            5677788899999999999877665543333222211110   001111111111111111 111123355678999999


Q ss_pred             cchhhhHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040          240 RFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS  314 (338)
Q Consensus       240 ~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  314 (338)
                      +.|++++|+.+..++. .+...|.+.+.+.             ....+...+++.++..+++.+..++ .++++++
T Consensus       368 ~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-------------~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~  429 (432)
T PRK10406        368 QVRALGVGLSYAVANALFGGSAEYVALSLK-------------SIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKG  429 (432)
T ss_pred             CccchhhhHHHHHHHHHHHhHHHHHHHHHH-------------HhCCCcHHHHHHHHHHHHHHHHHHH-hhhcccc
Confidence            9999999999987775 3445777777553             2222445555555666665555444 3444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.74  E-value=5.3e-17  Score=144.76  Aligned_cols=166  Identities=14%  Similarity=0.135  Sum_probs=114.4

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      +......+....+.|.++++.|+++.+            .........++.+++.++.|++.||+|||+.+..+.+...+
T Consensus       230 ~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  297 (406)
T PRK11551        230 FFTLIVLYFLLNWLPSLLVGQGLSRSQ------------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334445666777889999888877755            23356666778889999999999999999988876555554


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      +..++....       + .....+..+..++...+..+..+++.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+
T Consensus       298 ~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        298 SLAALAAAP-------S-FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHhcC-------c-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            444333222       1 22222233333333344456677788999999999999999999999999999999999973


Q ss_pred             ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                                  ...++...+...+.+.+++.+..+++
T Consensus       370 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        370 ------------LGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             ------------cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence                        23456666666655555555554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.74  E-value=7.2e-17  Score=145.72  Aligned_cols=184  Identities=14%  Similarity=0.119  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTI  179 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~  179 (338)
                      +...+..++.....++...|.|.++++ .|++..+            +.....+..++.+++.+++|+++||+  |||..
T Consensus       256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence            344444455555667788899999987 4666544            33355566777888999999999999  55543


Q ss_pred             HHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040          180 QLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI  258 (338)
Q Consensus       180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  258 (338)
                      ..+ ...+..+...++....     ..+.... .......+....+.......+..|.+|++.|++++|+.+...++|+.
T Consensus       324 ~~~~~~~l~~~~~~~~~~~~-----~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  397 (452)
T PRK11273        324 TGVFFMTLVTIATIVYWLNP-----AGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  397 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----ccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence            222 1111122221111111     0111111 11222222222222222334567999999999999999998888765


Q ss_pred             H-HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhh
Q 036040          259 I-GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEE  317 (338)
Q Consensus       259 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  317 (338)
                      + +|.+.+.+.             +..||+..|++.+++++++++...+...+++|+.+|
T Consensus       398 ~~g~~v~g~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (452)
T PRK11273        398 VAASAIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHEE  444 (452)
T ss_pred             HhhhhhHHHHH-------------HHhcchHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            5 799999998             567899999888888888877766444343444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.74  E-value=3.8e-17  Score=146.72  Aligned_cols=177  Identities=13%  Similarity=0.058  Sum_probs=110.4

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chH-HHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRV-TIQ  180 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr-~~~  180 (338)
                      ..+..+.....++++..|.|.++++ .|++..+            +........++.+++.+++|+++||+  ++| ...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~  315 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMN  315 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHH
Confidence            3344445555666777899999854 5777654            33456667788889999999999998  333 322


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ....+...+....+.....     .+ ........+..++...+..........|.+|++.|++++|+.++..++|+.++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~  389 (434)
T PRK11663        316 LIFAAGILLSVGSLWLMPF-----AS-YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS  389 (434)
T ss_pred             HHHHHHHHHHHHHHHHccc-----cc-HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence            2221111111111111110     01 11122222222222222222233456899999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      |.+.+.+.             +..||+..|.+.+++++++.+... ..++.++
T Consensus       390 p~~~g~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK11663        390 GYPLAKVL-------------EIWHWTGFFVVISIAAGISALLLLPFLNAQAP  429 (434)
T ss_pred             cccHHHHH-------------HhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            99999998             567899999988888777766554 4444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.73  E-value=5.2e-17  Score=142.09  Aligned_cols=168  Identities=12%  Similarity=0.134  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH---HH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV---TI  179 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---~~  179 (338)
                      +...+.+++....+|++..|+|.++++.|++..             ......+..+.   +.+..++++||..||   +.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-------------~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r~~  258 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-------------AGDAVALAILA---GLIGVAVIPDRVARAGLRSI  258 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-------------HHHHHHHHHHH---HHHHHHHhhHHhhhhhhHHH
Confidence            445566777778888999999999988665431             11123333333   333457888887543   33


Q ss_pred             HHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040          180 QLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI  258 (338)
Q Consensus       180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  258 (338)
                      ... ..+..++....+....       +... .+....+.+++..+..+..+++.+|.+|++.|+++.|+.+..++++++
T Consensus       259 ~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~  330 (368)
T TIGR00903       259 YIRAAALLIAAFFLALAFEL-------NRLA-LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV  330 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-------ccHH-HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH
Confidence            332 2222222222222111       1122 222223333334444455778899999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040          259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  309 (338)
                      ++|.+.+.+.             .  +....|.+++++.+++.+....+++
T Consensus       331 ~~~~~~~~~~-------------~--~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       331 ALALAAMLFI-------------S--SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHh-------------c--CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999998875             2  6667788888887777666543343

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.73  E-value=2.2e-16  Score=141.73  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML  192 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  192 (338)
                      ....+....+.|.++++.|+++..            .........++.+++.+++|++.||+|||+.+..+.++..+..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  311 (426)
T PRK12307        244 FGANWPIFGLLPTYLAGEGFDTGV------------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF  311 (426)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            334445566788888887765543            33355666778889999999999999999998887766555444


Q ss_pred             HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      .+.....      ..........+..++...+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.
T Consensus       312 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        312 PLFRIPQ------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHcc------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            3332210      111111112222222222333444567799999999999999999999999999999999997

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.73  E-value=1.3e-16  Score=144.72  Aligned_cols=185  Identities=12%  Similarity=0.093  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ++...+..++....+++...|.|.|+++ .|+++.+            +........++.+++.+++|+++||+|||+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~  327 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------------AINTFTLFEIGALVGSLLWGWLSDLANGRRAL  327 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            4445555666666777888999998865 6776644            33456667778889999999999999998876


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAII  259 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~  259 (338)
                      ........++..++....     ..+ .....+..+..+....+..........|.+|++.|+++.|+.+..+++ |..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~  401 (467)
T PRK09556        328 VACIALALIIFTLGVYQH-----ATS-EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF  401 (467)
T ss_pred             HHHHHHHHHHHHHHHHHh-----cCc-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence            654433332222211111     111 222222222233222232222234567999999999999999999997 7799


Q ss_pred             HHHHHHHhhh-ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040          260 GAFGFLYAAQ-DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL  306 (338)
Q Consensus       260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (338)
                      +|.+.+.+.+ ..++. ..+++ ...+|+..|++.+++.+++.+..++
T Consensus       402 ~~~~~G~i~~~~~~g~-~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        402 AKVGLGMIADPTKNGT-PIFGY-TLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HhhhHHHHhccccccc-ccccc-cccChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999984 11000 00000 1457999999888888887666553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.73  E-value=1.3e-16  Score=142.13  Aligned_cols=162  Identities=12%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHc--cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAV--GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      +...+.+++....++++..|.|.++++.  |+++.+            +........++.++|.+++|+++||++||+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~  312 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH  312 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence            4455556667777888899999999885  333322            34467777888899999999999999977643


Q ss_pred             -HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          181 -LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                       ....+...+.. ++....     . ........... ..++.....+..+....|.+|++.|++++|+.+..+++|+++
T Consensus       313 ~~~~~~~~~~~~-~~~~~~-----~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~  384 (412)
T TIGR02332       313 TALPYLFAAAGW-LLASAT-----D-HNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL  384 (412)
T ss_pred             HHHHHHHHHHHH-HHHHhc-----C-CHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh
Confidence             33333333222 221111     0 11111111111 111122223334456678899999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHH
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVN  297 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  297 (338)
                      +|.+.+.+.             +.. +|+..+.+.+++.
T Consensus       385 ~p~~~g~i~-------------~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       385 SPFLIGILK-------------DATGSFNSGLWFVAALL  410 (412)
T ss_pred             hhhhccccc-------------ccCCCCchhHHHHHHHH
Confidence            999999987             344 5888887666543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.72  E-value=2.9e-16  Score=139.85  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             HHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          111 LLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      ......+....+.|.++++ .|+++.+            .........++.+++.++.+++.||+|||+.+..+.+.+.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~  316 (405)
T TIGR00891       249 FANLYSHPIQDLLPTYLKADLGLSPHT------------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL  316 (405)
T ss_pred             HHHHHHhhhhhhhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence            3344445566677777754 5666543            33356667788889999999999999999988877655433


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      ..+......       ...........+.++...+..+....+++|.+|++.|++++|+.+....+|+.++|.+.+.+.+
T Consensus       317 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       317 LIIPVFAIG-------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHhC-------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222221111       1122222222233333344455666788999999999999999999999999999999999983

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.70  E-value=2.5e-16  Score=140.87  Aligned_cols=172  Identities=9%  Similarity=-0.074  Sum_probs=119.5

Q ss_pred             hhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040          117 FSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA  195 (338)
Q Consensus       117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  195 (338)
                      ++...+.|.+.++ .|.++..            .........++.+++.++.+++.||.++++.+..+.++.++..+++.
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  307 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQ------------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG  307 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhH------------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence            4456678888887 6776544            33355667788888999999999998877777777665555554443


Q ss_pred             hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040          196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (338)
                      ...       + .....+..++.+.+.....+...+++.|..|++.|+++.|+.+....+|..+++.+.+.+.       
T Consensus       308 ~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~-------  372 (417)
T PRK10489        308 LMP-------M-WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG-------  372 (417)
T ss_pred             ccc-------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH-------
Confidence            322       1 2222222222233222223445577899999999999999999999999999999999998       


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhhhhh
Q 036040          276 ADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEISGE  321 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~  321 (338)
                            +..|....+++.+++.++..+... .++++++++.+|++++
T Consensus       373 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        373 ------AMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             ------HHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence                  567777787777766555544444 7799988887776554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.69  E-value=4.6e-16  Score=142.37  Aligned_cols=150  Identities=11%  Similarity=0.093  Sum_probs=102.6

Q ss_pred             hhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040          117 FSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA  195 (338)
Q Consensus       117 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  195 (338)
                      +....++|.+++ +.|+++.+            .........++.+++.+++|+++||+|||+.+..+.++..+..+++.
T Consensus       292 ~~~~~~lp~~l~~~~g~~~~~------------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  359 (496)
T PRK03893        292 WPIQALLPTYLKTDLGYDPHT------------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF  359 (496)
T ss_pred             chHHHHHHHHHHhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence            345678898885 56776644            44466777888889999999999999999988877655544433322


Q ss_pred             hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040          196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (338)
                      ...     . ..........+..++...+..+....+++|.+|++.|++++|+.+....+|+.++|.+.+.+.       
T Consensus       360 ~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~-------  426 (496)
T PRK03893        360 AIG-----G-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA-------  426 (496)
T ss_pred             hcc-----c-cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh-------
Confidence            211     0 111222222222222233334455567899999999999999999999999999999999997       


Q ss_pred             CCCCCCCCcchHHHHHHHHHHH
Q 036040          276 ADPGYPAGIGIKNTLFLLAAVN  297 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                            +..|++..+...++..
T Consensus       427 ------~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        427 ------QRLDLGTALASLSFSL  442 (496)
T ss_pred             ------ccCChHHHHHHHHHHH
Confidence                  5778887775555433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.69  E-value=2.8e-16  Score=147.00  Aligned_cols=194  Identities=15%  Similarity=0.021  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040           98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV  177 (338)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  177 (338)
                      .|..++...+..+........+...+|.+.+++|.++.+            ..++.+...++.++|.+++|+++||+|||
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------------~g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------------KGMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            334444444444444444555666788888888876644            34466777889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA  257 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~  257 (338)
                      +++++++++.+++.++.++...        ...+++..++.+++.++..+...++++|.+|++.|++.+++..++..+|.
T Consensus       233 ~~lii~lil~~i~~ll~afa~s--------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~  304 (742)
T TIGR01299       233 QCLLICLSVNGFFAFFSSFVQG--------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG  304 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            9999988887777766665432        33444455555655566667888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      ++++.+...+.....-...........+|+..+++.++++++.+++.+++||+.
T Consensus       305 ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP  358 (742)
T TIGR01299       305 IYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            999887766542110000000001234799988887777777766666889973

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.69  E-value=8.6e-16  Score=135.29  Aligned_cols=153  Identities=19%  Similarity=0.051  Sum_probs=107.7

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ...+.+.+.++.|.++.+            .........++.+++.++.|++.||+|||+.+..+.++..++.+++....
T Consensus       224 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGF------------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP  291 (377)
T ss_pred             HHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            344555566666654432            33456677788889999999999999999998888777766665554332


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                      .      .............+.......+....+.+|.+|++.|+++.|+.+....+|..++|.+.+.+.          
T Consensus       292 ~------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~----------  355 (377)
T TIGR00890       292 M------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL----------  355 (377)
T ss_pred             c------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            1      111112122222333333334455567899999999999999999999999999999999987          


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHh
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLL  302 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~  302 (338)
                         +..||+..|.+.+++.+++++
T Consensus       356 ---~~~g~~~~f~~~~~~~~~~~~  376 (377)
T TIGR00890       356 ---TEIGFEYTFIVTGAFALTSLA  376 (377)
T ss_pred             ---hhhchhhHHHHHHHHHHHhcc
Confidence               577899999888877766543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.68  E-value=1.3e-15  Score=135.86  Aligned_cols=188  Identities=12%  Similarity=0.022  Sum_probs=140.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040           98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV  177 (338)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  177 (338)
                      .++.++...+.+++............|.+.+++|+++.+            .........++..++.++.|+++||+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r   73 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------------FGLAATLFYAAYVICGIPSNIMLAIIGAR   73 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------------HHHHHHHHHHHHHHHHhhHHHHHHHhChH
Confidence            344566667777777777777788888888888888765            33466677888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA  257 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~  257 (338)
                      +++..+.++.+++.++.++...        ...+....++.+.+..+..+....++.|.+|++.|++++|+.+....+|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  145 (412)
T TIGR02332        74 RWIAGIMVLWGIASTATMFATG--------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM  145 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888777766542        33444455555555555566666788999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .+++.+.+.+.+..       +..+..||+..|++.++..++..++.+ ++||++.
T Consensus       146 ~~~~~~~~~l~~~~-------~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       146 ALGLILSGYILALD-------GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHhCC-------CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999988875210       001246999999988877766555444 7788764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.68  E-value=1.7e-15  Score=134.22  Aligned_cols=174  Identities=17%  Similarity=0.131  Sum_probs=110.3

Q ss_pred             HHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          104 GTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      ...+..++.....+....+.|.++++ .|.++.+            .........++.+++.+++|+++||+|||+....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  286 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV  286 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence            34444555556666777788888765 4655543            3345666777888899999999999999961111


Q ss_pred             -HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          183 -GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                       ......++.++........ ...+........ ...++...+..+..+++.+|.+|++.|+++.|+.+....+|+.++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~  364 (399)
T TIGR00893       287 FARKTAIIAGLVLSLLMFAT-NYVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGP  364 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhh
Confidence             1111111111111111000 001112222222 2222333335677888999999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhhe
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFT  304 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  304 (338)
                      .+.+.+.             +..| ++..+.+.+++.+++.+..
T Consensus       365 ~i~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       365 IVIGAIA-------------ATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHhhhhc-------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999997             5566 8888888777777665543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.67  E-value=2.2e-15  Score=135.37  Aligned_cols=146  Identities=14%  Similarity=0.034  Sum_probs=91.6

Q ss_pred             HHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          107 STWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      +..+.....++....|.|.++++ .|++..+            ......+..++.+++.+++|+++||+|||+.++.+..
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAAD------------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            33344556677888899999887 5776543            3345666777788899999999999999998877644


Q ss_pred             HHHHHHHHH-HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHH
Q 036040          186 FMTVFMLAL-AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFG  263 (338)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~  263 (338)
                      ...+..... ....    .. ..........++.++......+..+.+.+|.+|++.|+++.|+.+..+.. ++.++|.+
T Consensus       313 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~  387 (434)
T PRK15075        313 LAILTAYPALSWLV----AA-PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAI  387 (434)
T ss_pred             HHHHHHHHHHHHHH----cC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHH
Confidence            433221111 1111    01 11111111111111111222233446789999999999999997666655 57889999


Q ss_pred             HHHhhh
Q 036040          264 FLYAAQ  269 (338)
Q Consensus       264 ~~~~~~  269 (338)
                      .+.+.+
T Consensus       388 ~g~i~~  393 (434)
T PRK15075        388 STWLIH  393 (434)
T ss_pred             HHHHHH
Confidence            998874

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.67  E-value=1.2e-15  Score=135.15  Aligned_cols=167  Identities=15%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      +......+.....++....+.|.+.+ +.|.++.+            .........++.+++.+++|+++||+|||+.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            33444445555667777788888884 45666543            333556667778888999999999999999877


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHH-HHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISA-AAGKAGAIIG  260 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~  260 (338)
                      ....+..+..........   .. ..........+..++......+...++++|.+|++.|+++.++.+ ....+|..++
T Consensus       290 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~  365 (394)
T TIGR00883       290 IFTVLAALLAVPLLMALL---DS-GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA  365 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh---cC-CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence            554444333221111110   00 112222223333333333444566788999999999999999864 4456788899


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHH
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNV  298 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  298 (338)
                      |.+.+.+.+             ..| |+..++..+++++
T Consensus       366 p~~~g~l~~-------------~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       366 PYIAAALVA-------------MTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHH-------------HcCcchhHHHHHHHHHH
Confidence            999999983             445 6666655554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.67  E-value=7.9e-15  Score=133.11  Aligned_cols=183  Identities=11%  Similarity=-0.019  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ++...+..++....++....|+|.++++ .|++..+            +.....+..++.+++.+++|+++||+++|+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3445566667777788888899999876 5666644            44466677888889999999999998754211


Q ss_pred             H------HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040          181 L------IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK  254 (338)
Q Consensus       181 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~  254 (338)
                      .      ....+..++..+..+...+.  . ......++...+.++...+..+..+....|..|. .+|.+.|+.++.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~  406 (465)
T TIGR00894       331 SLTAARKIFNGIGGLGPGIFAYALPYL--S-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGF  406 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHc--C-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHH
Confidence            0      11111111111111111010  0 1112222222222222333333444555677665 88999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          255 AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                      ++++++|.+.+.+.+..          ...+|..+|.+.++..+++.++....++.
T Consensus       407 l~~~i~p~l~g~~~~~~----------~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  452 (465)
T TIGR00894       407 IGGLIASTLAGNILSQD----------SKNVWLIVFLIMAFVNILCVIFYLIFGSA  452 (465)
T ss_pred             HHHHHHHHhhheeeCCC----------CchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            99999999999876310          11358889999888888887776654433

>TIGR00895 2A0115 benzoate transport

Probab=99.66  E-value=3.1e-15  Score=132.76  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      +...+..++....++....+.|.+.++.|+++.+            .........++.+++.++.++++||+|||+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            3334444455566777778888777777777654            3346666778888999999999999999954443


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                       ..+.++...++.....      + ........++.+++..+..+..+++++|.+|++.|+++.|+.+....+|..++|.
T Consensus       321 -~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~  392 (398)
T TIGR00895       321 -LLLGAVFAVLVGSTLF------S-PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI  392 (398)
T ss_pred             -HHHHHHHHHHHHHHhh------C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3333333333222110      1 2222223333333334445667788999999999999999999999999999999


Q ss_pred             HHHHh
Q 036040          263 GFLYA  267 (338)
Q Consensus       263 ~~~~~  267 (338)
                      +.+.+
T Consensus       393 ~~G~l  397 (398)
T TIGR00895       393 LAGYL  397 (398)
T ss_pred             hHHhc
Confidence            98865

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.65  E-value=1.2e-15  Score=137.33  Aligned_cols=178  Identities=13%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+..++.....++...+.|.++++ .|+++.+            +.....+..++.+++.+++|+++||+++++....+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  323 (438)
T TIGR00712       256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATG  323 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH
Confidence            3334444455667788899999987 4766654            33455667778888999999999999644322223


Q ss_pred             HHHHHHHHHH-HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH-HHHH
Q 036040          184 FFFMTVFMLA-LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA-IIGA  261 (338)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~  261 (338)
                      .....+..+. +.+..   ....+... .....+..++...+..........|.+|++.|++++|+.+..+++++ .++|
T Consensus       324 ~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp  399 (438)
T TIGR00712       324 VFFMTLVTIAVIVYWM---NPAGNPLV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS  399 (438)
T ss_pred             HHHHHHHHHHHHHHHh---cCCCchHH-HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcc
Confidence            2222111111 11111   00111111 11112222222222222222346799999999999999999888875 6899


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      .+.+.+.             +..|+...+.+.++..+++.+..+ .+||.|
T Consensus       400 ~l~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       400 AIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhHHHHH-------------HhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999998             566888898888877777777666 667755

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.65  E-value=2.7e-15  Score=132.97  Aligned_cols=181  Identities=13%  Similarity=0.062  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040           98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV  177 (338)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  177 (338)
                      .|+..+...+..++.....|......|.+.+++|+++.+            .........++..++.++.|.++||+|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr   85 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------------AGQSVTVTAFVAMFASLFITQTIQATDRR   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence            444444455554544455556666788888998988866            33355666777788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA  257 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~  257 (338)
                      ++++.+.++.+++.++..+...        ...+....+..+.......+....++.|.+|++.|+++.++......+|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~  157 (394)
T PRK10213         86 YVVILFAVLLTLSCLLVSFANS--------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL  157 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence            9999999888887776655431        33444455555555555566677788999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      .++|.+.+.+.             +..||+..|++.+++++++.+... ..||++
T Consensus       158 ~ig~~l~~~l~-------------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        158 VIAAPLGSFLG-------------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHH-------------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            99999999997             578999999988877766555544 467653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.65  E-value=3e-15  Score=133.29  Aligned_cols=184  Identities=17%  Similarity=0.151  Sum_probs=137.1

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040           97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR  176 (338)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  176 (338)
                      ++++......+.++......+......|.+.+++|+++.+            .........++..++.++.|+++||+||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~   76 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------------AASLISAALISRWFGALMFGLWGDRYGR   76 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444566677777777778888888889988888888766            3446677788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      |+.++.+.++.+++.++..+...        ...+....++.+.+.....+...+++.|.+|++.|+++.++.+....+|
T Consensus        77 r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  148 (405)
T TIGR00891        77 RLPMVTSIVLFSAGTLACGFAPG--------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG  148 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence            99999988877777766655432        3334444455555555555667778899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      .++++.+.+.+.+.           ...+|+..|.+.++..++..+.....||++
T Consensus       149 ~~~~~~l~~~l~~~-----------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       149 AVVAAQVYSLVVPV-----------WGDGWRALFFISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHHHHHHh-----------cCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999998888631           112499988876665555544444667764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.64  E-value=3.2e-15  Score=134.35  Aligned_cols=177  Identities=11%  Similarity=0.014  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ......+.+++.....+....+.|.+.+++|+++.+            .........++..++.++.|+++||+|||+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~   91 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------------IGLLATLFYITYGVSKFVSGIVSDRSNARYFM   91 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence            344455555666666667788899999998888755            34466777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .++.++.+++.++......        ...+.+..++.+...+...+....++.|.+|++.|++++|+.+....+|..++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~  163 (434)
T PRK11663         92 GIGLIATGIINILFGFSSS--------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALI  163 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888776665442        22233333333333333345666788999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +.+.+.+.             +..||+..|++.+++.++..+... +++|+
T Consensus       164 ~~~~~~l~-------------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        164 PLVVGAIA-------------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHH-------------HcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999887             578999999888776655544333 55654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=4.8e-15  Score=132.25  Aligned_cols=180  Identities=9%  Similarity=0.038  Sum_probs=116.9

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ...+.+.++++.|.++...    .+-..........+..+..+++.++.|+++||+|||+++..+.++.++...++....
T Consensus       227 ~~~~~~~~~~~~g~~~~~~----~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~  302 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFA----DSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD  302 (418)
T ss_pred             HHHhHHHHHHHhccccccc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            4456677777777655321    000011234456666777788889999999999999999999887777655554421


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISA-AAGKAGAIIGAFGFLYAAQDQDKSKAD  277 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~  277 (338)
                      .    .......+.+..++.+.......+....++.|.+|++.|++++|+.+ ....+|..++|.+.+.+.+....    
T Consensus       303 ~----~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~----  374 (418)
T TIGR00889       303 P----EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA----  374 (418)
T ss_pred             c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----
Confidence            0    00011222222333332222333455567899999999999999997 56778999999999999853210    


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040          278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR  313 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~  313 (338)
                         ...+||+..|.+.+++.+++.++.+ +++|+.+.
T Consensus       375 ---~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       375 ---YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             ---ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence               0125799999888888777777666 77876543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.63  E-value=4.2e-15  Score=131.82  Aligned_cols=173  Identities=13%  Similarity=0.088  Sum_probs=127.2

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      .+..+......+......|.+.+++|.++.+            .........++..++.+..|.++||+|||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545         15 ALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3333333344444556678898998888765            3345556677777788889999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      +.+++.+...+...        ...+.+..+..+.......+...+++.|.+|++.|++++|+......+|..++|.+.+
T Consensus        83 ~~~~~~~~~~~~~~--------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~  154 (390)
T PRK03545         83 LFIASHVLSALAWN--------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR  154 (390)
T ss_pred             HHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            88888777665542        3334444444444444444556678899999999999999999999999999999999


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      .+.             +..||+..|++.++++++..+..+ .+||.+
T Consensus       155 ~l~-------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        155 VIG-------------QYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHH-------------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            886             567999999998888777766555 566643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=9.6e-16  Score=129.94  Aligned_cols=185  Identities=10%  Similarity=0.031  Sum_probs=149.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHH
Q 036040           92 KMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILI  171 (338)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  171 (338)
                      +...|.+++.++.+++.+.+.++.-..+..-.|.+.++.|++.++.            +.+.+...+..-++-++.|.++
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l------------G~i~s~f~i~YG~sKf~~G~~s   88 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL------------GILGSAFSITYGVSKFVMGVLS   88 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH------------HHHHHHHHHHHHHHHHHhhhhc
Confidence            3445555667788888888888888889999999999988888773            3366777788888999999999


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHH
Q 036040          172 DIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAA  251 (338)
Q Consensus       172 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~  251 (338)
                      ||.+.|..+-.++++++++++++++..+        ...+.++..+.+.+.+.-.|.+...++.++|++.||+..++-++
T Consensus        89 Dr~npr~fm~~gLilsai~nil~Gfs~s--------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~  160 (448)
T COG2271          89 DRSNPRYFMAFGLILSAIVNILFGFSPS--------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT  160 (448)
T ss_pred             ccCCCceeehHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence            9999999999999999999999988663        33444444444544444457777889999999999999999999


Q ss_pred             HHHHHHHHHHHHH--HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          252 AGKAGAIIGAFGF--LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       252 ~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      ..++|+.+.|.+.  +.+.             ...+|+..|++.++++++..++.+ .+++
T Consensus       161 shNiGGal~~~~~~la~~~-------------~~~~w~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         161 SHNIGGALAPLVALLAFFA-------------FHGGWRAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             hhhcccchHHHHHHHHHHH-------------hccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998  7776             567999999999988888777766 5544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.62  E-value=1.3e-14  Score=127.86  Aligned_cols=156  Identities=15%  Similarity=0.096  Sum_probs=101.0

Q ss_pred             hccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          120 NLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       120 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ..+.|.+++ +.|.++.+            .........+..+++.+++|++.||+|||+.+..+.++..+.........
T Consensus       219 ~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKL------------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HhhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            445566654 45666543            22233344445566778899999999999988877655444433332221


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                             + ........++.++......+....+..|..|++ |++++++.+...++|..++|.+.+.+.          
T Consensus       287 -------~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~----------  347 (375)
T TIGR00899       287 -------S-LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA----------  347 (375)
T ss_pred             -------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence                   1 222222222222222223344556778888865 569999999999999999999999987          


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  309 (338)
                         +..|++..+.+.+++.+++.+...+++|
T Consensus       348 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       348 ---ERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             ---HhccchhHHHHHHHHHHHHHHHHheecC
Confidence               5678999998888888877776655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=6.3e-15  Score=126.28  Aligned_cols=175  Identities=17%  Similarity=0.122  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .++.+.+..|.....-+.....+|.+.+++|.+...            ++...+.+.++..+++++...++||+.||+++
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL   81 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------------AGQLITAYALGVALGAPLLALLTGRLERRRLL   81 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            456677777888888888999999999999988865            56688888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +..+.+..++.++.++..+        ...+.+..++.+...+..+++..++..++.|+++|++++++..+...++.++|
T Consensus        82 l~~l~lFi~~n~l~alAp~--------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G  153 (394)
T COG2814          82 LGLLALFIVSNLLSALAPS--------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG  153 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence            9999999999999988774        44566667777777777788888999999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP  308 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  308 (338)
                      ..+..++-             +.+|||.+|++.+++++++++..+ .+|
T Consensus       154 vPLGt~ig-------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         154 VPLGTFLG-------------QLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ccHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999997             689999999999999999988887 888

>TIGR00895 2A0115 benzoate transport

Probab=99.62  E-value=3.2e-15  Score=132.69  Aligned_cols=178  Identities=20%  Similarity=0.212  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ..+...+..+......+....+.|.+.++.|+++.+            .........++.+++.++.|+++||+|||+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~   85 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVL   85 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence            344444455555556666777888888888877654            33456667778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ..+.++..++.++.....       + ...+.+..++.+++.....+...+++.|.+|++.|+++.++......+|..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  157 (398)
T TIGR00895        86 LWSILLFSVFTLLCALAT-------N-VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG  157 (398)
T ss_pred             HHHHHHHHHHHHHHHHcc-------c-hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence            998877777766655433       1 33344444455555555567778899999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      +.+.+.+.             +..+|+..+++.+++.++..+... ++||+.
T Consensus       158 ~~~~~~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       158 GFLAGWLI-------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             HHHHHHHh-------------hcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            99999887             567899888877655555544444 677764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.62  E-value=5.8e-15  Score=131.63  Aligned_cols=182  Identities=18%  Similarity=0.162  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040           97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR  176 (338)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  176 (338)
                      +++..+....+..+......+......|.+.+++|+++.+            .........++.+++.++.|+++||+||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~   79 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------------MGWAFSAGILGLLPGALLGGRLADRIGR   79 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4444566666666777777777888889999998887755            3446677788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      |+++..+.++..++.++..+..       + ...+.+..++.+.+.....+...+++.|.+|++.|++++++.+....+|
T Consensus        80 r~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  151 (406)
T PRK11551         80 KRILIVSVALFGLFSLATAQAW-------D-FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG  151 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            9999998877776665555433       1 3333444444444444445666778999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      ..+++.+...+.             +..+|+..|++.+++.++..+... ++||+.
T Consensus       152 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        152 GALASVIGVLAA-------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHc-------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            999998887775             577899999887766665555444 677754

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=1.5e-14  Score=128.38  Aligned_cols=160  Identities=9%  Similarity=-0.005  Sum_probs=101.2

Q ss_pred             hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      ++....+.|.++++ .|+++.+            .........++.+++.+++|+++||+|||+.+..+.....+.....
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~------------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKL------------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM  299 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            34445577877754 5665543            2223344455667788999999999999998776655444333222


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                      ....       +...... .....+.......+....+.+|.+|++ |+++.++.+...++|..+++.+.+.+.      
T Consensus       300 ~~~~-------~~~~~l~-~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~------  364 (393)
T PRK15011        300 LMAH-------SPAILLG-LQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVA------  364 (393)
T ss_pred             HHHh-------hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            2111       1122221 111111111111122334568888864 899999999989999999999999997      


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  309 (338)
                             +..||+..+.+.+++.+++++..++.||
T Consensus       365 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        365 -------EIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             -------HHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence                   5678999988888887777776666665

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.61  E-value=1e-14  Score=129.01  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=128.7

Q ss_pred             HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT  188 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  188 (338)
                      .+.............|.+.+++|.++.+            .........++..++.++.|+++||+|||+.+..+.++.+
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   81 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAADLSTPASI------------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA   81 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            3444445555566778888888887755            4446677788888999999999999999999999888777


Q ss_pred             HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          189 VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ++.+.......        ...+....++.+.+.....+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.
T Consensus        82 ~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        82 LSSLGLALSNN--------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHHHcc--------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766655431        2333334444444444445666788899999999999999999999999999999999887


Q ss_pred             hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040          269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR  313 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~  313 (338)
                                   +..+|+..+++.+++.++..+..+ +.||++.+
T Consensus       154 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       154 -------------VWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             -------------HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence                         567999999888877777666555 66776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.61  E-value=1.1e-14  Score=132.44  Aligned_cols=163  Identities=13%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             hccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          120 NLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       120 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      ..+.+.++ ++.|+++.+           .+........++.++|.+++|+++||+|+|+.++++.++.++..+++....
T Consensus       242 ~~~~~~~l~~~~G~s~~~-----------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~  310 (491)
T PRK11010        242 MSLTTTFLIRGVGFDAGE-----------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS  310 (491)
T ss_pred             HHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555554 456777654           222223455678889999999999999998887766554444333222111


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                       . . ..+.........+.....+.+ .+..+++..+..|++.+++..|+.+....+|..+++.+.+.+.          
T Consensus       311 -~-~-~~~~~~l~~~~~l~~~~~g~~-~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~----------  376 (491)
T PRK11010        311 -I-T-DKNLYSMGAAVFFENLCGGMG-TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV----------  376 (491)
T ss_pred             -h-c-cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence             0 0 111111111111111111111 1334577788999999999999999999999998888999988          


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                         +..||+..|.+.+++++++.+...+++++
T Consensus       377 ---~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        377 ---EAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             ---HHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               56789999998888888887776655554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.60  E-value=4.6e-14  Score=125.18  Aligned_cols=176  Identities=9%  Similarity=-0.021  Sum_probs=120.5

Q ss_pred             HHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040          107 STWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF  186 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  186 (338)
                      +..++....+++...+.|.++++.|++..+            +.....+..++.+++.++.+++.||+|||+.++.+..+
T Consensus       212 ~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l  279 (393)
T PRK09705        212 VYFGLINGGYASLIAWLPAFYIEIGASAQY------------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVL  279 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhh------------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            334445567778888999999888877655            33466777888899999999999999999988887666


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      ..++..++.....      +... ...  ++.+....+..+.......+.+ |++.|++.+|+.+..+.+++.++|.+.+
T Consensus       280 ~~~~~~~~~~~~~------~~~~-~~~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G  350 (393)
T PRK09705        280 QLVGFCGFIWLPL------QLPV-LWA--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG  350 (393)
T ss_pred             HHHHHHHHHHccc------hHHH-HHH--HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555544332210      1111 111  1222222333344444455666 4678999999999999999999999999


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCCh
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSL  315 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~  315 (338)
                      ++.+            ...++...|.+.++++++..+... +.||++++..
T Consensus       351 ~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        351 VLRS------------ISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHH------------HhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            9984            222477778777777777666655 7888877654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.60  E-value=1.6e-14  Score=131.89  Aligned_cols=180  Identities=13%  Similarity=0.044  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH
Q 036040           99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT  178 (338)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  178 (338)
                      +..+..+.+..++..........-.|.+.+++|.+..+            ..+....+.++...+.+.+|+++||+|||+
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~   72 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------------LLWIIDIYSLVMAGMVLPMGALGDRIGFKR   72 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            34556666677777777777788899999998887765            333555566677778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHH
Q 036040          179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGA  257 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~  257 (338)
                      +++.+.++..++.++.+....        ...+++...+.+.+..+..+.....+.+.+ |++.|+++.|+......+|.
T Consensus        73 ~l~~~~~~~~~~~~~~~~a~~--------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~  144 (495)
T PRK14995         73 LLMLGGTLFGLASLAAAFSPT--------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA  144 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            999999888888877776542        334444444455444444444444455554 78999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      .++|.+.+.+.             +..+|++.|++...++++..++.. ++|+.+
T Consensus       145 ~~gp~lgg~l~-------------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        145 AFGPLVGGILL-------------EHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHhh-------------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999997             678999999988777777666655 667654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.59  E-value=4.9e-14  Score=126.61  Aligned_cols=200  Identities=13%  Similarity=0.022  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .++...+.++.............|.+.++++-+...    .  ..............++..+|++++|+++||+|||+.+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l   96 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT----T--TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM   96 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            344444556666666666666677777775421111    0  0011122233455677779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ..+.++.+++.++.++...+..........+++..++.+.+.++..+...++++|.+|++.|++..++.......|..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999998888887765422100001123455566666766667778888999999999999999998877777777777


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      +.+...+......     .....+|||.+|++.++++++...+...+||++
T Consensus       177 ~~~~~~~~~~~~~-----~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        177 LLVVVVLQQTLED-----AELREWGWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             HHHHHHHHHhCCH-----HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            7665444311000     000257999999987777766654433677764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.59  E-value=1.5e-14  Score=129.77  Aligned_cols=164  Identities=13%  Similarity=0.088  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ......+.++......+......|.+.+++|+++.+            .........++.+++.++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l   86 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------------GAFLATAAFIGRPFGGALFGLLADKFGRKPLM   86 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            345555566666666777777788888888888755            34466677888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .++.+..+++.++..+...        ...+.+..++.+.+..+..+....++.|.+|++.|+++.++......+|.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  158 (426)
T PRK12307         87 MWSIVAYSVGTGLSGLASG--------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA  158 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence            9998888888777666542        33444445555555555566677788999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN  297 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +.+.+.+.             +..+|+..|++.+...
T Consensus       159 ~~l~~~l~-------------~~~~w~~~f~i~~~~~  182 (426)
T PRK12307        159 AYFMPSFA-------------EAYGWRAAFFVGLLPV  182 (426)
T ss_pred             HHHHHHHc-------------ccCCHHHHHHHHHHHH
Confidence            98888876             5679999988654433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.59  E-value=2.3e-14  Score=130.06  Aligned_cols=164  Identities=15%  Similarity=0.080  Sum_probs=95.7

Q ss_pred             HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-------HH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-------IQ  180 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~  180 (338)
                      +++.....+....+.|.++.+ .|+++..            +.....+..++.+++.+++|+++||++||+       ..
T Consensus       261 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~  328 (476)
T PLN00028        261 YGYSFGVELTMDNIIAEYFYDRFGLSLET------------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL  328 (476)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence            333444445566678887755 4666543            445677778888899999999999998762       22


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ....++.++..+++....       + ....+...++.++......+..+++..++.| +.|+++.|+.+..+++|++++
T Consensus       329 ~~~~~l~~i~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~  399 (476)
T PLN00028        329 WIVQTLGGVFCIWLGRAN-------S-LGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLT  399 (476)
T ss_pred             HHHHHHHHHHHHHhcccc-------h-HHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHH
Confidence            222222222222111111       1 1111111122222222222345566677654 689999999988887888877


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      +.+.. ..             ...+|...|++.+++.+++.++.+++
T Consensus       400 ~~l~~-~~-------------~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        400 QLLFF-TG-------------SSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHH-hc-------------CCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            76654 11             34578889988887877777666544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.58  E-value=1.2e-14  Score=128.73  Aligned_cols=166  Identities=15%  Similarity=0.096  Sum_probs=127.1

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ...+......|.+.+++|+++.+            .........++..++.++.|+++||+|||+.+..+.++.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   75 (399)
T TIGR00893         8 LDRANLSFAAPMLQEDLGLSAAQ------------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL   75 (399)
T ss_pred             HHHHhhhHhHHHHHHhhCCChhh------------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH
Confidence            34455566677777888887765            344677788888899999999999999999999988887777776


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      ..+...        ...+.+..++.+.+.....+....++.|.+|++.|++++++......+|..+++.+.+.+.     
T Consensus        76 ~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----  142 (399)
T TIGR00893        76 QAFAGA--------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-----  142 (399)
T ss_pred             HHHHcC--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----
Confidence            665442        3334444455555555556677788999999999999999999999999999999999876     


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                              +..+|+..|.+.+++.++..+..+ +.||++.
T Consensus       143 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       143 --------IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             --------HhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence                    567899999888877776666555 5666543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.1e-14  Score=130.03  Aligned_cols=226  Identities=9%  Similarity=0.047  Sum_probs=123.7

Q ss_pred             CchhhhhhhHHHHH-HHHHHHhccCCch--hhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCC
Q 036040            1 WRIVLMFGALPIAF-TYYWRMKMPETPH--YTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADH   77 (338)
Q Consensus         1 WR~~f~~~~i~~~i-~~~~~~~lpEsp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (338)
                      |||+|++.++..++ .++.++++|+.|.  |. +. +  +|..-..++.++.+.                       ...
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~-~--~ek~~~~~~~~~~~~-----------------------~~~  257 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LT-D--EEKELVVERLRESPS-----------------------GGI  257 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEEEecCChhhccc-cc-h--HHHHHHHHHHHhccC-----------------------CCc
Confidence            99999998877776 5566778999998  32 21 1  111111111111110                       000


Q ss_pred             CCcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHH
Q 036040           78 DDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVA  156 (338)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
                      +++.++..+++.++.+       .++...+++++.....|++..|+|.++++ .|++..+.+.            +.+..
T Consensus       258 ~~~~~~~~~~~a~~dp-------~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~------------ls~~~  318 (495)
T KOG2533|consen  258 ENKFKWKGFKEALKDP-------GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL------------LSTPY  318 (495)
T ss_pred             ccccCHHHHHHHHhch-------hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc------------ccchH
Confidence            0112233333444333       34667888888889999999999999999 4577765333            88889


Q ss_pred             HhccchhHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeee
Q 036040          157 LCGLIPGYWITVILIDI----IGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIV  232 (338)
Q Consensus       157 ~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (338)
                      .++++++.+++|+++||    ..+|........+..+...+......      .... .....+..........+.....
T Consensus       319 ~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~w  391 (495)
T KOG2533|consen  319 DVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA------VLPG-AYGAFLIGPYGLIATAIIALSW  391 (495)
T ss_pred             HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc------cchH-HhHHHHhcchhhHHHHHHHHhh
Confidence            99999999999999999    56666655554443333211111110      0111 1111111111122223344455


Q ss_pred             ecccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHH
Q 036040          233 PAEIFPARFRST-CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLF  291 (338)
Q Consensus       233 ~~e~~p~~~R~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (338)
                      +++....+.|.. ..+........++.+++.+......            ..++|...|.
T Consensus       392 ~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a------------p~y~~~~~f~  439 (495)
T KOG2533|consen  392 TSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA------------PRYGWGAVFY  439 (495)
T ss_pred             ccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC------------cchhhhhHHH
Confidence            666665555444 3444444444555555555444331            4467777773

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.58  E-value=2.4e-14  Score=127.05  Aligned_cols=176  Identities=12%  Similarity=0.061  Sum_probs=127.3

Q ss_pred             HHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          104 GTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      +..+..+....+........|.+.+++|.++.+            .........++..++.++.|+++||+|||+.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            334444444455555557788888888877654            33456667778888899999999999999999998


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      .+...++..+......        ........++.+.......+..+.++.|.+|++.|+++.++.+....++..++|.+
T Consensus        75 ~~~~~i~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i  146 (392)
T PRK10473         75 AALFIIASLLCSLAET--------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL  146 (392)
T ss_pred             HHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777666654331        22233333344443333445567788999999999999999999999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .+.+.             +..+|+..+++.+++.++..++.+ ++||++.
T Consensus       147 ~~~l~-------------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        147 GHLIM-------------LKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHH-------------hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            88876             567999999888877777666655 6677654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.58  E-value=4.5e-14  Score=128.20  Aligned_cols=184  Identities=10%  Similarity=0.058  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040          100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI  179 (338)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~  179 (338)
                      +.+......++......+....+.|.+.+++|++..+            .........++..++.+++|+++||+|||++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~  103 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYG  103 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            3445555555555666677777888888888887755            2234566677788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      +..+.++.+++.++.++...        ...+.+..++.+++..+.. ....+++|.+|++.|++++|+.+...++|..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~s--------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~  174 (476)
T PLN00028        104 SAFLLMLTAPAVFCMSLVSS--------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV  174 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH
Confidence            99888777777666655432        2223333333333333322 23346789999999999999999888888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ++.+.+.+.......    +..+..||+..|++.++++++..+..++++
T Consensus       175 ~~~~~~~i~~~~~~~----~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        175 TQLLMPLVFPLIKDA----GAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHhc----CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            877776553211000    000235899999998888777666555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.58  E-value=1.1e-14  Score=132.97  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      +.+.+..+.............|.+.+++|.++.+            ..+......++.+++.++.|+++||+|||+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI   72 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence            4444555555666666777889999998888765            3346677788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +.++..++.++......        ...++...++.+.+.....+...+++.|.+|++.|+++.++......+|..++|.
T Consensus        73 ~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        73 STFAFTLGSLLCGVAPN--------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             HHHHHHHHHHHHhCcCC--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            98888777776655431        3344455555555555556777788999999999999999999999999999999


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      +.+.+.             +..+|++.|++.+.++++..++.+ +.||++
T Consensus       145 ~~~~l~-------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       145 LGGWII-------------ENYHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             cHhHhc-------------cCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            999887             678999999888777766666555 566644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.58  E-value=7.9e-14  Score=127.65  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .........++.+++.+++|+++||+|||+++.++.++..++.++.+.....  ........+++..++.+++.++..+.
T Consensus        58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            3457777888899999999999999999999999888877777666554310  00001334555566666666666777


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC----------CCCCcchHHHHHHHHHHHH
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPG----------YPAGIGIKNTLFLLAAVNV  298 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  298 (338)
                      ...+++|.+|++.|++++++.+....+|..+++.+...+.......-..+.          ....++||..+.+.++.++
T Consensus       136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~  215 (502)
T TIGR00887       136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL  215 (502)
T ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence            889999999999999999999999999999998887665421100000000          0123589999988777777


Q ss_pred             HhHhheeecccCCC
Q 036040          299 LGLLFTFLVPEPNG  312 (338)
Q Consensus       299 ~~~~~~~~~~e~~~  312 (338)
                      +.+++.+++||+.+
T Consensus       216 i~~~~~~~lpESpr  229 (502)
T TIGR00887       216 LALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHhCCCCHH
Confidence            77666668999743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.57  E-value=7.5e-15  Score=129.39  Aligned_cols=169  Identities=8%  Similarity=-0.072  Sum_probs=126.8

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      +.............|.+.+++|+++.+            .........++.+++.++.|+++||+|||++++.+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   72 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEEIGLSKTD------------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAI   72 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHHhCCCHhH------------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHH
Confidence            444555666777788888888888765            34467777888888999999999999999999999888888


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH-HHHHhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF-GFLYAA  268 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~-~~~~~~  268 (338)
                      +.++..+...        ...+.+..++.+.+.....+...+++.|.+|++.|+++.++.+....+|..+++. +...+.
T Consensus        73 ~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  144 (379)
T TIGR00881        73 VNLFFGFSTS--------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA  144 (379)
T ss_pred             HHHHHHHhhh--------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence            7777765542        3334444455555555556777789999999999999999999999999999994 555554


Q ss_pred             hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                                   ...+|+..|++.+++.++..+..+ +.||++
T Consensus       145 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       145 -------------ELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             -------------hcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence                         567899998888777666544444 666543

>PRK10504 putative transporter; Provisional

Probab=99.57  E-value=3.2e-14  Score=129.34  Aligned_cols=176  Identities=13%  Similarity=0.052  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      .+.+.+..++.....+....+.|.+.+++|.++.+            .........++..++.+++|+++||+|||++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   79 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF   79 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            45555666777777777888999999998887754            333556667777788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .+.++.+++.++..+..       + ...+++..++.+.+.....+...+++.|.+|++.|+++.|+......+|..++|
T Consensus        80 ~~~~~~~~~~~~~~~~~-------~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  151 (471)
T PRK10504         80 TAIVLFTLGSLFCALSG-------T-LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGP  151 (471)
T ss_pred             HHHHHHHHHHHHHHHhC-------C-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            88777776666554432       1 333444445555545555566777889999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      .+.+.+.             +..+|++.|.+...++.++.+... ..|+.
T Consensus       152 ~~~g~l~-------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        152 ALGGLLV-------------EYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHH-------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999987             567999999887777666665555 44543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=1e-13  Score=123.30  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=111.0

Q ss_pred             hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      .+.....+.|.+..+.|++.              .........++.+++.++.|++.||+|||+.+..+..+.+++.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  296 (399)
T PRK05122        231 GFGTIATFITLYYAARGWDG--------------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL  296 (399)
T ss_pred             HHHHHHHHHHHHHHHccccc--------------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            34445566777766655421              1113345566677888999999999999998888777666665555


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                      ....       +... .....++.+++.....+.......|.+|++.|+++.|+.+....+|..+++.+.+.+.      
T Consensus       297 ~~~~-------~~~~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------  362 (399)
T PRK05122        297 WLAP-------SPWM-ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA------  362 (399)
T ss_pred             HHhc-------cHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            4432       1122 2222233333333333444455678899999999999999999999999999999887      


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCC
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGR  313 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  313 (338)
                             +..|++..+++.+++.+++.+...++++.+++
T Consensus       363 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (399)
T PRK05122        363 -------SWFGYPSIFLAAALAALLGLALTWLLYRRAPR  394 (399)
T ss_pred             -------HHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                   56789999998888888877766655554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.57  E-value=4.9e-14  Score=125.69  Aligned_cols=179  Identities=14%  Similarity=0.064  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ..+...+..+............+|.+.+++|.++.+            .........++..++.++.|+++||+|||+.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   81 (406)
T PRK15402         14 FPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM   81 (406)
T ss_pred             HHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            334444444444444555555677788888877654            33355667778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +.+....+++.+.......        ...++...++.+.......+..+.++.|.+|++.|.++.++......++..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  153 (406)
T PRK15402         82 LAGVAFFILTCLAILLAQS--------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLG  153 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence            9988777777666655431        22333334443433333345566778999999999999999988888899999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      |.+.+.+.             +..+|+..+++.+++.+++.+..+ ..||+++
T Consensus       154 ~~i~~~l~-------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        154 PLVGAALI-------------HVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHH-------------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99988887             567899999888888777766554 6677654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.57  E-value=1.2e-13  Score=122.55  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=102.2

Q ss_pred             hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      .+....+.+.++++ .|+++.+            .........++.+++.++.|+++||+|||.... +..+..+....+
T Consensus       221 ~~~~~~~~~~~l~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l  287 (390)
T PRK03545        221 HFTAYSYIEPFVQQVAGLSENF------------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHhcCCCccH------------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHH
Confidence            34344556666555 5666644            334556667788999999999999999886543 333333333222


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                      ....       +.........++.+.......+.....+.+..| +.|++++|+.+...++|..+||.+.+.+.      
T Consensus       288 ~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~------  353 (390)
T PRK03545        288 LPAA-------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS------  353 (390)
T ss_pred             HHHh-------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            2111       112222223333333333333344456677766 58899999999999999999999999998      


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                             +..|++..+++.+++.+++.+...
T Consensus       354 -------~~~g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        354 -------LHLGLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             -------hccChhHHHHHHHHHHHHHHHHHH
Confidence                   688999999988888888777655

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.57  E-value=2.2e-14  Score=125.26  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=124.0

Q ss_pred             HHHHhHhhhhhhccHH-HHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQK-EIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM  187 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~  187 (338)
                      .+.............| .+.+++|.++.+            .........++..++.++.|+++||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~   72 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQ------------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHC------------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhh
Confidence            3344444555556666 566677877766            344666778888899999999999999999999998888


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      +++.++..+..       +.. .++...++.+.+.....+....++.|.+|++.|++++++......+|..+++.+.+.+
T Consensus        73 ~~~~~~~~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  144 (352)
T PF07690_consen   73 ALGSLLLAFAS-------NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL  144 (352)
T ss_dssp             HHHHHHHHHHC-------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHhhhhh-------hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh
Confidence            88744444322       223 4555555556555566677888999999999999999999999999999999999998


Q ss_pred             hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      .             +..+|+..|++.+++.++..++
T Consensus       145 ~-------------~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  145 I-------------SYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             C-------------CHCHHCCHHHHHHHHHHHHHHH
T ss_pred             h-------------hccccccccccccchhhhhhhh
Confidence            6             6788999999999888888764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.2e-13  Score=121.41  Aligned_cols=242  Identities=10%  Similarity=0.064  Sum_probs=154.6

Q ss_pred             CchhhhhhhHHHHHHHHHH-HhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040            1 WRIVLMFGALPIAFTYYWR-MKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD   79 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~-~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (338)
                      |+.+|++.++.+++..+++ ++..|+|.-   ++.-.+++.+.+++-.                          .+++.+
T Consensus       194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k--------------------------~~~~~~  244 (466)
T KOG2532|consen  194 WPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGK--------------------------SEAHVK  244 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhcc--------------------------cccccC
Confidence            9999999888888766555 456788863   2222222222221111                          011111


Q ss_pred             cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040           80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALC  158 (338)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
                      .+.+.+++++++++..       +.+.+..++.+..++.+..|.|.|+++ +|++-.+            ++..+++..+
T Consensus       245 ~~~~vP~~~i~ts~~v-------wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------------~G~~salP~l  305 (466)
T KOG2532|consen  245 KKPPVPYKAILTSPPV-------WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------------TGFLSALPFL  305 (466)
T ss_pred             CCCCCCHHHHHcCHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------------hhHHHHHHHH
Confidence            1246677788777654       567778888889999999999999998 5777655            5568889999


Q ss_pred             ccchhHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          159 GLIPGYWITVILIDIIGR---------VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       159 ~~~~~~~~~g~l~d~~gr---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      ..++..+++|.++||.-+         |..-.++..+.+++++++++...     ......++++.+..++.+ ...+-.
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-----~~~~~a~~~l~~~~~~~g-~~~~Gf  379 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD-----EHRLLAVILLTIAIGLSG-FNISGF  379 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC-----CcchHHHHHHHHHHHHcc-cchhhh
Confidence            999999999999998754         33334444444455544444331     112222222222222222 111222


Q ss_pred             eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      +.-..+. .++.-+..+|+.+....+.++++|.+.+.+.. .         .+...|+..|++.+++.+++.++..+.
T Consensus       380 ~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~---------~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  380 YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D---------NTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C---------CCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            2222332 45666999999999999999999999999872 0         034579999999999988887666533

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.56  E-value=4.4e-14  Score=129.36  Aligned_cols=179  Identities=16%  Similarity=0.131  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH
Q 036040           99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT  178 (338)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~  178 (338)
                      ++.+..+.+.++...+..+......|.+.+++|+++.+            .........++..++.++.|+++||+|||+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~   86 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------------AASLISAAFISRWFGGLLLGAMGDRYGRRL   86 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            34555566666666677777777888888888877654            334566667788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040          179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI  258 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  258 (338)
                      ++..+.++.+++.++..+...        ...+.+..++.+++..+..+....++.|.+|++.|+++.++......+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  158 (496)
T PRK03893         87 AMVISIVLFSVGTLACGFAPG--------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV  158 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            999988887777776665432        333444445555554555566677889999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                      +++.+.+.+.             +..+|+..|.+.++..++.++.....||+
T Consensus       159 ~~~~~~~~l~-------------~~~~w~~~f~~~~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        159 VAAQVYSLVV-------------PVWGWRALFFIGILPIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999999887             67899998876544444333332355664

>PRK03699 putative transporter; Provisional

Probab=99.56  E-value=2.9e-14  Score=126.53  Aligned_cols=172  Identities=12%  Similarity=0.080  Sum_probs=114.7

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+..++....+++...|.|.++++ .|+++.+            +........++.+++.+++|+++||++||+.+...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLED------------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence            3344445555667788899999965 5777655            33355666677888999999999999999988876


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      ..+..+...++....       +.. ......+..++...+..+...++..|..|. .+++..+.......+|..++|.+
T Consensus       278 ~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~  348 (394)
T PRK03699        278 AGLALVLMYLFVNTD-------DPS-HLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVV  348 (394)
T ss_pred             HHHHHHHHHHHHHcC-------Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHH
Confidence            655554433332221       112 222222333333333444444556676664 45778888888999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                      .+++.             +..|++..++..+++.+++.+.....+++
T Consensus       349 ~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (394)
T PRK03699        349 TSPIV-------------AHFGLQAALLTANGLYAVVFVMCILLGFV  382 (394)
T ss_pred             HHHHH-------------HHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99998             46788888888887777776655555443

>PRK03699 putative transporter; Provisional

Probab=99.56  E-value=1.5e-13  Score=122.09  Aligned_cols=173  Identities=10%  Similarity=0.047  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ..+...+.++......+......|.+.+++|+++.+            .........++..++.+++|++.||+|||+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            445555566666666777888889998888887755            33356667778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +.+.++.+++.++..+...        ...+.+..++.+.+.....+....++.|.+|++.|+.+.++.+....+++.++
T Consensus        76 ~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  147 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS--------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF  147 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch--------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            9888877777776665431        22333333444433333445566778999999999999999888888889999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      |.+.+.+..            ...+|+..|.+.+++.++..++.+
T Consensus       148 ~~~~~~l~~------------~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        148 PIIAAYLLA------------RSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHh------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence            988887753            457999999888877666554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.56  E-value=4.7e-14  Score=124.73  Aligned_cols=176  Identities=16%  Similarity=0.058  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      ....+..+......+......|.+.+++|++..+            .........++..++.++.|+++||+|||+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            3444455555566666777889998998888765            3346777788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +.++.+++.++.++...        ...+.+..++.+.+.....+....++.|.+|++.|++++++......++..+++.
T Consensus        74 ~~~~~~~~~~l~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  145 (382)
T PRK10091         74 LVALCVIGNAMFTLSSS--------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP  145 (382)
T ss_pred             HHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence            98888888777666542        3334444444444333333444566789999999999999999888999999999


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      +.+.+.             +..+|+.+|.+.++..++..+..+ ++||.+
T Consensus       146 l~~~l~-------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        146 LGTYLS-------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHh-------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            988886             567999999988887766665544 678754

>PRK10054 putative transporter; Provisional

Probab=99.56  E-value=3.9e-14  Score=125.60  Aligned_cols=174  Identities=13%  Similarity=0.022  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          104 GTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      .+.+..++...+++....++|.+++ ++|+++.+            .....+...++.+++.++.|+++||+|||++++.
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~   78 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL   78 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence            3444556666677777778887775 46887765            3445666677778889999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +.+...++.+++.+...        ....+......+.......+....+..|.+|++.|+++.|+.+...++|..++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~  150 (395)
T PRK10054         79 AITAFASGFIAIPLVNN--------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPP  150 (395)
T ss_pred             HHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777776666555432        2222222222222222334556677899999999999999999999999999999


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      +.+.+.              ..+|+.+|.+.+++.+++.+... ++||++
T Consensus       151 l~~~l~--------------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        151 LGTLLV--------------MQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHH--------------HhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999886              25788899888777777655554 566553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.56  E-value=4.3e-14  Score=128.01  Aligned_cols=170  Identities=14%  Similarity=0.001  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHH---ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hch
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA---VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGR  176 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr  176 (338)
                      .++.+.+..++....+|+...++|.|+.+   +|+++.+            +........++..++.+++|+++|| +||
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------------ag~~~~~~~~~~~~~~~~~G~laDr~~G~   78 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------------AFIIFGAYSALVYLLTSVGWWFGDRVWGT   78 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------HHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence            34455566677788899999999999876   5666644            4456677777888899999999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc---hhhhHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF---RSTCHGISAAAG  253 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~  253 (338)
                      |+++.++.++.+++.+++++...        ...+.+...+.+.+.+...+...+++++.+|++.   |+++.++.+...
T Consensus        79 ~~~l~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~  150 (475)
T TIGR00924        79 KKTMVLGGIVLMLGHFMLAMSIY--------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSI  150 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc--------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHH
Confidence            99999999888888777665431        2222233333444444455666778899998754   889999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      ++|+.++|.+.+.+.             +..||+..|.+.++..+++.+.
T Consensus       151 niG~~ig~~l~g~l~-------------~~~g~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       151 NIGSFISPLLAGVIA-------------ENYGYHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHHHHHHHHH-------------HhcChHHHHHHHHHHHHHHHHH
Confidence            999999999999997             5678999998877655555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=1.3e-13  Score=125.76  Aligned_cols=199  Identities=14%  Similarity=0.032  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      .+...+.++.....+.......|.+.+++..+.+..      .....+........++..+|.+++|+++||+|||+++.
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPS------VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            344445555555555555556666655543222110      01111112245667788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      ++.++.+++.++.++...+..-.......+++..++.+++.++..+....+++|.+|++.|+...++......+|..+++
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~  171 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA  171 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999988888765321000000113455566667666777777888999999999999999998887778888877


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      .+...+......     .....+|||..|++.+++.+++.++...+||+.
T Consensus       172 ~~~~~~~~~~~~-----~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        172 GVVVLISTIVGE-----ANFLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHhcCH-----HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            665544311000     000357999999987766665554444778864

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.55  E-value=3.2e-14  Score=124.52  Aligned_cols=165  Identities=10%  Similarity=-0.015  Sum_probs=117.8

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..+..+....|.+.+++|+++.+            .........++..++.+..|+++||+|||++++.+......+.. 
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~------------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-   71 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEE------------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-   71 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-
Confidence            34555677888998998888765            33356677788888999999999999999877655433333221 


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      .....       .....+.+..++.+.+... ........+|.+|++.|++++++......+|..+++.+.+.+.     
T Consensus        72 ~~~~~-------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-----  138 (368)
T TIGR00903        72 RLLDP-------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-----  138 (368)
T ss_pred             HHHHh-------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            11110       1133445455555444332 3344455689999999999999999999999999999999987     


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                              +..|||..|++.++++++..++.+ ++||+++
T Consensus       139 --------~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       139 --------TAGGLQLLIIPIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             --------HccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence                    578999999988888777766655 7888643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.55  E-value=9.5e-14  Score=124.37  Aligned_cols=170  Identities=15%  Similarity=0.097  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTI  179 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~  179 (338)
                      +...+...+.....+|++..++|.++.+ +|+++.+            +........+...++.+++|+++||+ |||+.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------------AYELFSAYCSLVYVTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            3445555566778899999999999876 5776644            34455566677777888999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAAGKAGA  257 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~g~  257 (338)
                      ++++.++..++.+++.....      ..........+ ...+.+...+...++++|.+|++  .|+++.++.++..++|+
T Consensus        79 iliG~il~~lg~lll~~~~~------~~~~~~l~l~l-i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~  151 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEI------HPSFLYLSLAI-IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGS  151 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhc------chhHHHHHHHH-HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHH
Confidence            99998887777665543210      11111111111 11222233344567889999986  79999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      .++|.+.+.+.             +..||+..|.+.++..+++++.
T Consensus       152 ~iap~l~g~L~-------------~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        152 IIAPIACGYAQ-------------EEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHH-------------hhhChHHHHHHHHHHHHHHHHH
Confidence            99999999997             5789999998766554444443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.55  E-value=4.6e-14  Score=128.32  Aligned_cols=180  Identities=14%  Similarity=0.020  Sum_probs=122.1

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      ++............|....+.+++.....    +.+............++..++.+++|+++||+|||++++.+.++..+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~  113 (481)
T TIGR00879        38 LMFGYDTGVIGGALALPAFEFKFTSANSD----SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI  113 (481)
T ss_pred             HhcccccchhhhhhhcHHHHHhcCCcccC----CCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHH
Confidence            33333333344455555556555522100    00012245567778888899999999999999999999998888777


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH---HH
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF---LY  266 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~---~~  266 (338)
                      +.++.......     .....+++..++.+.+.....+....+++|.+|++.|++++++.+....+|..+++.+.   ..
T Consensus       114 ~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       114 GAILMGLAAFA-----LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHhccc-----cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            77666543311     11223444455555555555566778899999999999999999999999999999988   44


Q ss_pred             hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      ..             ...+|+..|++.++..++..+..+++||+.
T Consensus       189 ~~-------------~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       189 LN-------------NTLGWRIPLGLQLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             CC-------------CCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            33             567999999887666666655555778764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=4.6e-13  Score=120.18  Aligned_cols=188  Identities=19%  Similarity=0.148  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH--
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV--  177 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--  177 (338)
                      .+...++.+++..-+...+..+...+.+ .+|+++.+            .....+...+.+++|++++|++.||+|.|  
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~  349 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTK  349 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            4555666667766777777777777776 47888866            33466777888889999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAI--PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA  255 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~  255 (338)
                      ++++.+.++..+..+.-.+  ... .... .....+.++.++.+...++.++..-++.+|+.|+...+..+|+....+..
T Consensus       350 ~~l~~~l~~~~~i~~~g~~G~~~~-~~g~-~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  350 RTLLISLILWIIIPLYGLFGFWPS-FFGL-KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-ccCc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            7777766555333322222  111 0001 22333555555666677777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040          256 GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS  314 (338)
Q Consensus       256 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  314 (338)
                      .+.+||++++.+.+            ...+.|..+....++.++++++.+.++..++++
T Consensus       428 ss~lGPll~g~i~~------------~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  428 SSWLGPLLFGLITD------------ATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHHH------------HhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            99999999999985            233477888888888888888877887766654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.54  E-value=8.3e-14  Score=126.29  Aligned_cols=168  Identities=11%  Similarity=0.006  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hch
Q 036040           99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGR  176 (338)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr  176 (338)
                      ++.++.+++..+.....+|+...+++.|+++ +|++..+            +............+..+++|+++|| +||
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------------a~~i~~~~~~~~~~~~~~~G~laDr~~G~   80 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------------AFITFGAFAALVYGLISIGGYVGDHLLGT   80 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence            3445566666677889999999999988765 6666543            2223333343444456689999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAAGK  254 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~  254 (338)
                      |++++++.++..++.+++.+...       ....+.+.....+.+.+...+...+++.|.+|++  .|+.++++.+...+
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~-------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n  153 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLL-------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN  153 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH
Confidence            99999999888888777765431       1122223333444445555667778999999887  45788999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHH
Q 036040          255 AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNV  298 (338)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (338)
                      +|..++|.+.+++.             +..||++.|++.++..+
T Consensus       154 ig~~~g~~l~g~l~-------------~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        154 IGSLISLSLAPVIA-------------DKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             HHHHHHHHHHHHHH-------------HhhChHHHHHHHHHHHH
Confidence            99999999999997             57799999987654333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.54  E-value=1e-13  Score=126.32  Aligned_cols=158  Identities=20%  Similarity=0.120  Sum_probs=113.3

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchhhHHHHHHHHHHhhccC
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHW----IQKHNSTGFVVMYALTFFFANFG  224 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                      .........++.+++.+++|+++||+|||++++.+.++.+++.++.++.....    ..+.+....+++..++.+.+.++
T Consensus        57 ~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~  136 (479)
T PRK10077         57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL  136 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH
Confidence            44577788889999999999999999999999999888777766665432100    00112233445566666776677


Q ss_pred             ccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040          225 PNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT  304 (338)
Q Consensus       225 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (338)
                      ..+...++++|.+|++.|++++++......+|..+++.+...+....     +.......||+..|++.+++.++..+..
T Consensus       137 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~~~~~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG-----DASWLNTDGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cccccccCChHHHHHHHHHHHHHHHHHH
Confidence            77778889999999999999999999888888888877665543100     0001135699999998877777766655


Q ss_pred             eecccCC
Q 036040          305 FLVPEPN  311 (338)
Q Consensus       305 ~~~~e~~  311 (338)
                      +++||+.
T Consensus       212 ~~l~~s~  218 (479)
T PRK10077        212 YFVPETP  218 (479)
T ss_pred             HcCCCCc
Confidence            5888875

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=6.6e-14  Score=125.41  Aligned_cols=137  Identities=16%  Similarity=0.061  Sum_probs=94.7

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ...+..++.+++.+++|+++||+|||+.+..+.++.++...++.+..       + ...+....++.+.......+....
T Consensus       267 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~  338 (420)
T PRK09528        267 LNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-------G-PLEVSILKLLHAFEVPFLLVGVFK  338 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-------c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566678899999999999999998888777666665555432       2 222222222222222222233446


Q ss_pred             eecccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          232 VPAEIFPARFRSTCHGI-SAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      ++.|.+|++.|++..+. .++...+|.++++.+.+.+.             +..||+..|.+.+++.++..++.+ .+++
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-------------~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-------------DSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-------------HhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77889999999988766 56678899999999999998             567899999988888777666555 4443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.53  E-value=5.1e-14  Score=127.83  Aligned_cols=143  Identities=15%  Similarity=0.049  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .+.......++.+++.+++|+++||+|||+.+..+.++.+++.++..+...      .....+++..++.+.+.....+.
T Consensus        78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHhcccchhh
Confidence            444667778888899999999999999999999988877777666543321      11334555566666666677777


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhhee-e
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTF-L  306 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  306 (338)
                      ...+++|.+|++.|++++|+......+|.++++.+.+.+.             +. .+|+..|++.+++.++..++.+ +
T Consensus       152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~-------------~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC-------------ESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999887             45 4999999988888777666555 4


Q ss_pred             cccC
Q 036040          307 VPEP  310 (338)
Q Consensus       307 ~~e~  310 (338)
                      .+|+
T Consensus       219 ~~~~  222 (465)
T TIGR00894       219 PADD  222 (465)
T ss_pred             hcCC
Confidence            4443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.53  E-value=1.4e-13  Score=122.79  Aligned_cols=162  Identities=14%  Similarity=0.063  Sum_probs=118.7

Q ss_pred             hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040          118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP  197 (338)
Q Consensus       118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ....-+|.+.+++|.+...            .........++..++.+++|+++||+|||++++.+.++.+++.++....
T Consensus        34 ~~~p~l~~i~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         34 LIQPGIINVVRDFNADVSL------------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             hhccCHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            3344455666666665543            3345666678888899999999999999999999988877777766654


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040          198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  277 (338)
                      ..        ...+++..++.+.+.....+..+.++.|.+|++.|++++++.+....++..++|.+.+.+.         
T Consensus       102 ~~--------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---------  164 (413)
T PRK15403        102 TS--------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---------  164 (413)
T ss_pred             CC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            32        3334444444444333333445577889999999999999999999999999999998886         


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                          +..||+..|++.+++.+++.+..+ .+||+++
T Consensus       165 ----~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        165 ----HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             ----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence                467999999998888777766544 6788754

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.53  E-value=3.5e-15  Score=127.82  Aligned_cols=185  Identities=18%  Similarity=0.085  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040          100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI  179 (338)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~  179 (338)
                      +....+++...++...-|.+....+..-+.+|.++...++            +.....+...++++++|++.||+.||++
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl------------l~~vf~v~~~i~sPl~gyLadryNR~~v  100 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL------------LQTVFIVVFMIASPLFGYLADRYNRKRV  100 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc------------hhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence            3556666777777777777777777666667888877544            7777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      +.+|..+..++.++.++...        .+.+.+...+.+.+-..+.++..++++|.+|..+|++++++.++...+|+.+
T Consensus       101 ~~vG~~iW~~Av~~~~fs~~--------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl  172 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSNH--------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL  172 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence            99999999988888887754        5566777777777778888999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChh
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLE  316 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~  316 (338)
                      |-.....+..            ....||++|...+++.+++.++.+ +++|..++..+
T Consensus       173 G~vvgs~va~------------~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~  218 (493)
T KOG1330|consen  173 GYVVGSVVAS------------LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD  218 (493)
T ss_pred             eEEeeeeecc------------CccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence            8888777763            233499999999999999888887 77776654333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.53  E-value=2.5e-13  Score=120.64  Aligned_cols=179  Identities=9%  Similarity=-0.021  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      ..+......++............|.+.+++|+++.+            .........++..++.++.|+++||+|||+.+
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~   76 (394)
T PRK11652          9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI   76 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence            334444444444445555556678888888888765            34466677888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +.+.+...++.++.....       + ...+.+..++.+.+.....+....+..|.++.+.|+.+.++.+....++..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~-------~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         77 LVGMSIFILGTLVALFAH-------S-LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             HHHHHHHHHHHHHHHHHc-------c-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            988777776666554432       1 22333333333333322234445567888898999999999988888899999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      |.+.+.+.             +..||+..|++.++..++..+... +.||++.
T Consensus       149 ~~i~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        149 PLIGGLLT-------------TLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHH-------------hccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99998886             567899999888776665544443 6777643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.53  E-value=5.3e-14  Score=127.02  Aligned_cols=163  Identities=15%  Similarity=0.061  Sum_probs=106.3

Q ss_pred             HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHHHHHHH-
Q 036040          108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTIQLIGF-  184 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~-  184 (338)
                      ..+.....++....++|.+.++.|+++.+            ......+..++.+++.+++|+++||.  ++|+...++. 
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  316 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYE------------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA  316 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence            34444556667777888888887776644            33455666777888888999999973  3443333322 


Q ss_pred             -HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          185 -FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                       +..+++.++.....       + ...+++..++.++......+..++++.|.+|++.+++++|+.+....+|++++|.+
T Consensus       317 ~~~~~l~~ll~~~~~-------~-~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i  388 (455)
T TIGR00892       317 LLFNGLTHLLCALAG-------D-YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL  388 (455)
T ss_pred             HHHHHHHHHHHHHhc-------h-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence             22222222222111       1 22233333344444444455667788899999999999999999999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHHHHhHhh
Q 036040          264 FLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  303 (338)
                      .+.+.             +.. +|+..|++.+++.+++.+.
T Consensus       389 ~G~l~-------------~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       389 AGRLV-------------DATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             eeeee-------------hhcCCcchHHHHhhHHHHHHHHH
Confidence            99887             334 5888888777766665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.52  E-value=2.5e-13  Score=122.76  Aligned_cols=165  Identities=12%  Similarity=-0.002  Sum_probs=110.4

Q ss_pred             hhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040          117 FSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI  196 (338)
Q Consensus       117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  196 (338)
                      .++....|.+.++ |+++.+            .........++..++.+++|+++||+|||++++.+.++.++..+++.+
T Consensus        46 ~~~~~~~p~l~~~-g~s~~~------------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~  112 (452)
T PRK11273         46 KNFALAMPYLVEQ-GFSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  112 (452)
T ss_pred             HHHHHhhHHHHHc-CCCHHH------------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHh
Confidence            3455667776655 777655            344667778888889999999999999999999998887777776665


Q ss_pred             hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH-HHHHHHHhhhccccCC
Q 036040          197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII-GAFGFLYAAQDQDKSK  275 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~  275 (338)
                      ....    ......+.+..++.+.+.....+.....+.|.+|++.|++++|+.+....+|+.+ ++.+...+.       
T Consensus       113 ~~~~----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-------  181 (452)
T PRK11273        113 VPWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA-------  181 (452)
T ss_pred             hhcc----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------
Confidence            4210    0112233333333343333344444466789999999999999998888887644 454433332       


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          276 ADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                            ...+|+..|++.+++.++..++.. ++||+.
T Consensus       182 ------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        182 ------WFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             ------HhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence                  234899999988877666555444 667653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.52  E-value=1.3e-13  Score=120.82  Aligned_cols=164  Identities=13%  Similarity=-0.020  Sum_probs=118.1

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..........|.+..+.+.++.+            .........++.+++.++.|+++||+|||++++.+.++..++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900        13 IGTAITQVALPLYVLAGTGSASV------------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHH------------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            33444445566677776655543            444677778888889999999999999999999988777766666


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      ..+....   .......+.+..++.+.+.....+...+++.|.+|++.|+++.|+.+....+|.+++|.+.+.+.     
T Consensus        81 ~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----  152 (365)
T TIGR00900        81 LPFVALL---GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY-----  152 (365)
T ss_pred             HHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----
Confidence            5544310   00123334444444444444455667788999999999999999999999999999999999987     


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                              +..+|+..|++.++..++..+..+
T Consensus       153 --------~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       153 --------ATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             --------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence                    567899999887776666554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=5.8e-13  Score=118.86  Aligned_cols=176  Identities=15%  Similarity=0.082  Sum_probs=125.3

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      .+..++....+.....++|.+.+++|.+..+..       .........+..+...++.++.|+++||+|||+.++.+.+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSAL-------NMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            334455556666677789999999888764410       0112345667777888899999999999999999998887


Q ss_pred             HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      ..+++.+++.....        ...+.+..++.+.. .+..+....++.+.+|++.|+++.++......+|..++|.+.+
T Consensus        93 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874         93 GMGIVMVLMGLAQN--------IWQFLILRALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHHHHHHHHHHHhh--------HHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666554331        22333333333332 2334555567788999999999999999999999999999999


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      .+.             +..+|+..|++.+++.++..+..+ ++||.
T Consensus       164 ~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        164 LLA-------------DSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHH-------------HHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            887             567899999888887776666555 55654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=1.3e-13  Score=124.15  Aligned_cols=181  Identities=12%  Similarity=0.013  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .++...+.+..............|.+. +.|.++.+            .........++..++.++.|+++||+|||+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~   94 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGE------------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFL   94 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhH------------hHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence            334444444444444444555566554 45777765            33466777788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ..+.++.+++.++.......    .+....+.+..++.+.+.....+.....+.|.+|++.|++++|+.+....+++.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~  170 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWA----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIP  170 (438)
T ss_pred             HHHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHH
Confidence            88877777776665443210    01122233333334443333445555677899999999999999999999999998


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +.+.+...+            ...+|+..|++.++++++..+..+ ++||+
T Consensus       171 ~~l~~~~~~------------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       171 PLLVLLGMA------------WFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHHH------------HhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            888776542            346899999988888777655444 66664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1e-12  Score=112.86  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=114.8

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+..++...+.|....|...++++ .|++.+.            ..+....++++.++|+.++|++.|| +.|+.+...
T Consensus       216 ~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~  282 (394)
T COG2814         216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA  282 (394)
T ss_pred             HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence            3344444455566666666666665 5776654            4447778899999999999999999 888888887


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      ..+..+..+.+.+...       +....+....+.++.............++ .-++.+..+.++.....++|...|..+
T Consensus       283 ~~l~a~~~l~l~~~~~-------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~l  354 (394)
T COG2814         283 LLLLALALLALTFTGA-------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAAL  354 (394)
T ss_pred             HHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766655442       12222222222222222222222233444 335788999999999999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL  306 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (338)
                      .+.+.             +++|+....+..++..++++++.++
T Consensus       355 GG~v~-------------~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         355 GGLVL-------------DALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHH-------------HhhchHHHHHHHHHHHHHHHHHHHH
Confidence            99998             5689999988888888888777653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=8.9e-14  Score=126.18  Aligned_cols=189  Identities=10%  Similarity=-0.010  Sum_probs=129.7

Q ss_pred             hhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q 036040           96 RRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG  175 (338)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  175 (338)
                      |..+..+....+.++.....-..+....|.+.+++|+++.+            .........++..++.+++|+++||+|
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~Dr~g   92 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------------LGMIGLGFSITYGVGKTLVGYYADGKN   92 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhhhHhhccC
Confidence            33334455555555555566666777788888998887765            334566677888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040          176 RVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA  255 (338)
Q Consensus       176 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~  255 (338)
                      ||+++..+.++.++..++++......   .+....+++..++.+.+.....+....+++|++|++.|++++|+......+
T Consensus        93 ~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         93 TKQFLPFLLILSAICMLGFGASLGSG---SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            99999988888777776666532111   122344444555555554445566778899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          256 GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       256 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      |.++++.+...+....          ...+|+..|.+.+++.++..+..+ +.++
T Consensus       170 G~~l~~~i~~~~~~~~----------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        170 GGAGAGGVALWGANYF----------FDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             hhhHHHHHHHHHHHhh----------ccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999988877665210          012578778777766665544444 4443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.50  E-value=3.3e-13  Score=118.91  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=90.0

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-HHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR-VTIQLI  182 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~  182 (338)
                      ..+..+......++...+.|.++++ .|+++.+            .........++.+++.++.+++.||.++ |+....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~  288 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA  288 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH
Confidence            3344444455556677788888765 5666543            3446667778889999999999998643 332222


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      . .........+....  .... ..........+..+....+..+....+.+|.+|++.|+++.|+.+....+|+.++|.
T Consensus       289 ~-~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  364 (379)
T TIGR00881       289 V-FFMALIIVSLLVYW--LNPA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGL  364 (379)
T ss_pred             H-HHHHHHHHHHHHHh--cCcc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhh
Confidence            1 11111111111111  0000 112222222333333333444445567899999999999999999999999999999


Q ss_pred             HHHHhh
Q 036040          263 GFLYAA  268 (338)
Q Consensus       263 ~~~~~~  268 (338)
                      +.+.+.
T Consensus       365 ~~g~l~  370 (379)
T TIGR00881       365 PLGYLA  370 (379)
T ss_pred             hHHHHH
Confidence            999998

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.49  E-value=6e-13  Score=118.77  Aligned_cols=133  Identities=11%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ...+..++.+++.++.|+++||+|||+.+..+.....+..+......       + .....+..++.+.+.....+...+
T Consensus       263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~  334 (408)
T PRK09874        263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-------T-PLQLGILRFLLGAADGALLPAVQT  334 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHhhhHhhHHHHHH
Confidence            34445667778888899999999999998888766655554433322       1 222222333333333344455556


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ++.+..|++.|++.+++.+....+|..++|.+.+.+.             +..||+..|.+.+++.+++.++.+
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-------------~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-------------ANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH-------------hhcchhHHHHHHHHHHHHHHHHHH
Confidence            6678889999999999999999999999999999987             677899999988888888777665

>PRK15075 citrate-proton symporter; Provisional

Probab=99.49  E-value=1.2e-12  Score=117.61  Aligned_cols=185  Identities=14%  Similarity=-0.006  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .....++.+++.......+....|.+.++++.++.+.+.      ...+........++..++.++.|+++||+|||+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFAS------LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            345566677777778888888999999998877655110      00111122233444457888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +.+.++.+++.++.++...+..........+++..++.+.+.....+....+++|++|++.|++++++.....++|..++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            99998888888877765432100000011234445555555544455566789999999999999999998888888877


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHH
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAV  296 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+.+.+.....+     ...+..||+.+|++.+..
T Consensus       170 ~~~g~~l~~~~~~-----~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        170 ALLGYLLNQWLSP-----AQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHHHHHhCCH-----HHHhccchHHHHHHHHHH
Confidence            7776665311100     000367999999864433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.49  E-value=8.7e-13  Score=117.00  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=97.8

Q ss_pred             hhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040          117 FSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI  196 (338)
Q Consensus       117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  196 (338)
                      .....+.+.++++.|+++++           .+........+..+++.+++|++.||+|+|+.+..+.++..+..+....
T Consensus       225 ~~~~~~~~~~l~~~G~s~~~-----------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  293 (390)
T TIGR02718       225 VSGFGLSKLYLVDAGWPLEW-----------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA  293 (390)
T ss_pred             HHHHHHhhHHHHhcCCCHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344567778888888765           2222333334566677889999999999999988776554332222211


Q ss_pred             hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040          197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA-RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK  275 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (338)
                      ...... . ..............+......+..++...+..++ +.+++.+++.+....+|..++|.+.+.+.       
T Consensus       294 ~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~-------  364 (390)
T TIGR02718       294 QAAFWL-A-PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT-------  364 (390)
T ss_pred             HHHccc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            111000 0 1111111111221111112223334444555655 88999999999999999999999999998       


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          276 ADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                            +..|++..|...+++.+++.+.
T Consensus       365 ------~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       365 ------DRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             ------HHHccHHHHHHHHHHHHHHHHH
Confidence                  5668888888777776666554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=1.1e-12  Score=116.50  Aligned_cols=156  Identities=17%  Similarity=0.069  Sum_probs=107.3

Q ss_pred             hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      .+.....+.|.++++.+++..              ........++.+++.++.|++.||+|||+.+..+..+..+..+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWAMA--------------GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL  296 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCchh--------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence            344455666777776554321              123344556667888999999999999999888777666665544


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                      ....       +.. .......+.+.......+...+...|.+|++.|+++.|+.+....+|..++|.+.+.+.      
T Consensus       297 ~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~------  362 (392)
T PRK12382        297 WLAP-------TAW-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA------  362 (392)
T ss_pred             HHcc-------cHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            4322       112 22222222333223334445566788899999999999999999999999999999998      


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                             +..||+..|.+.+++.+++.+..+
T Consensus       363 -------~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        363 -------TSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             -------HHhCchHHHHHHHHHHHHHHHHHH
Confidence                   567899999988888777766554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.48  E-value=9.2e-14  Score=122.36  Aligned_cols=166  Identities=13%  Similarity=0.046  Sum_probs=118.2

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      .......|....+.|.+.+++|++..+            .........++..++.++.|+++||+|||+++..+.++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890        13 CFTSGYVYTWTLLAPPLGRYFGVGVTA------------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             HHHhhHHhhhhhHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            333334667788899999998887755            44467778888889999999999999999999999888888


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      +.++.++...        ...+.....+.+.+.....+.....+.|.+| +.|+++.++......+|..+++.+.+.+. 
T Consensus        81 ~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  150 (377)
T TIGR00890        81 GFTFYAIADS--------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI-  150 (377)
T ss_pred             HHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-
Confidence            8777666542        2223333333333333233334445677777 56999999999888888887766666665 


Q ss_pred             ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                                  +..+|+..|++.+++.++..+..+ ++++
T Consensus       151 ------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       151 ------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             ------------hcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence                        567999999988887777665554 4443

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=3.6e-13  Score=119.56  Aligned_cols=168  Identities=11%  Similarity=-0.030  Sum_probs=110.0

Q ss_pred             HHHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          107 STWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      +..+............+|.++ +++|+++.+            .........++..++.+++|+++||+|||+.++.+.+
T Consensus        22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~   89 (392)
T PRK12382         22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML   89 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence            333444444555556666654 567887765            3446777788888899999999999999999998877


Q ss_pred             HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      ...++.+..................+.+..++.+.+.....+...++..|.+|++.|++++++......+|..++|.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382         90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            66655433222110000001123334444444444433334445566789999999999999999888899999999998


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHH
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL  299 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (338)
                      .+.             ...||+..+.+..+..++
T Consensus       170 ~l~-------------~~~g~~~~~~~~~~~~~~  190 (392)
T PRK12382        170 LLH-------------SHFGFAALALTTMVLPLL  190 (392)
T ss_pred             HHH-------------hccChHHHHHHHHHHHHH
Confidence            886             567888776654444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.48  E-value=1.9e-13  Score=120.66  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=121.4

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .....|.+.+++|+++.+            .........++..++.+++|+++||+|||+.+..+.++.+++..+..+..
T Consensus        10 ~~p~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~   77 (377)
T PRK11102         10 YLPALPVIAADFGVSAGS------------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ   77 (377)
T ss_pred             HhccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            446778888888887755            34466677788888999999999999999999999888887777766543


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                      .        ...+.+..++.+.+.....+...+++.|.+|++.|++++++.+....+|..++|.+.+.+.          
T Consensus        78 ~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----------  139 (377)
T PRK11102         78 T--------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL----------  139 (377)
T ss_pred             c--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            2        2233333344444444444556678899999999999999999999999999999999887          


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                         +..+|+..|++.+++.++..+... ++||++
T Consensus       140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        140 ---VWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             ---HHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence               567899999888877777666554 667654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=1.9e-12  Score=112.73  Aligned_cols=171  Identities=23%  Similarity=0.273  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-HH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-IQ  180 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~  180 (338)
                      +...+..+...........+.|.+.++. |.++.+            .........++.+++.++.+++.||+|||+ .+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  245 (352)
T cd06174         178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE------------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL  245 (352)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444455556666777778888888774 555433            445677778888999999999999999999 88


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ..+..+..++.+.......        .........+.+.+.....+....+..|..|++.|++.+|+.+....++..++
T Consensus       246 ~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  317 (352)
T cd06174         246 LIGLLLAALGLLLLALAPS--------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG  317 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777777766655431        23333444444555555667788899999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL  306 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (338)
                      +.+.+.+.             +..+++..+.+.+++.+++.+..++
T Consensus       318 ~~i~g~l~-------------~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         318 PLLAGLLL-------------DTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHh-------------cccCcchHHHHHHHHHHHHHHHhee
Confidence            99999997             5778999999988888888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.48  E-value=1.6e-12  Score=114.87  Aligned_cols=160  Identities=11%  Similarity=-0.029  Sum_probs=112.4

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      ++..........+.|.++++.|.++..            .+.......++.+++..+.+++.||+|+|+++.++.+...+
T Consensus       215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~------------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       215 CLIQGAHAAYYGFSAIYWQAAGISASA------------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVG  282 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHhH------------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHH
Confidence            333444555666788888888887755            23345567888888889999999999999999999888887


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAA-AGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~  268 (338)
                      ...++.+...        ...+....++.+.......+....++++. |++.|+++.++.+. ...+|..+++.+.+.+.
T Consensus       283 ~~~~~~~~~~--------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       283 RWAIIGAIEA--------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             HHHHHHhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776665432        23333333433333333344556677887 99999999999864 55689999999999998


Q ss_pred             hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040          269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT  304 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (338)
                                   +..|. ..|++.+++.++++++.
T Consensus       354 -------------~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       354 -------------PTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             -------------HhccH-HHHHHHHHHHHHHHHHH
Confidence                         46675 56667777777665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.48  E-value=4.4e-13  Score=117.83  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhHhhhhhhccHHH-HHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          104 GTASTWLLLDVSYFSQNLFQKE-IFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      ...+..+......+....+.|. +.+++|+++.+            .........++..++.+++|+++||+|||+.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL   72 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            3445555566677778888885 66778888766            3346777888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +.++..++.+++.+...       ....+.+..++.+... +..+....+++|.+|++.|+++.++.....++|..+++.
T Consensus        73 ~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  144 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQ-------SYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF  144 (366)
T ss_pred             HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence            98888887776665430       1333333444444333 333445678899999999999999999888888888887


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHH-HHHHHHHHHhHhhee-ecccC
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTL-FLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +.+.+.......+   +.....+|++.+ +..+++..+..++.+ +.+|+
T Consensus       145 i~~~l~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       145 VMPPIIGSLIFGA---GLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             HHHHHHHHHHhcc---cccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            7766653110000   000234788887 433444433333333 44543

>PRK11043 putative transporter; Provisional

Probab=99.47  E-value=1e-12  Score=116.95  Aligned_cols=159  Identities=14%  Similarity=0.066  Sum_probs=113.2

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY  198 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  198 (338)
                      .....|.+.+++|.++.+            .........++..++.+++|+++||+|||+.+..+.++..++.++..+..
T Consensus        25 ~~p~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         25 YLPAFKAIQADLQTSASA------------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHhhHHHHHHHHCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            334455566777777654            44466777888889999999999999999999988877776666655433


Q ss_pred             hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                      .        ...+....++.+.+.....+....++.|.+|++.|+...+..+....++..++|.+.+.+.          
T Consensus        93 ~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~----------  154 (401)
T PRK11043         93 S--------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL----------  154 (401)
T ss_pred             C--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            1        2223333333333222223334466789999999999999988888899999999999887          


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                         +..+|+..|++.+++.++..+..++.+|.
T Consensus       155 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        155 ---NHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             ---hcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence               57799999988887777766655544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.47  E-value=6e-13  Score=118.41  Aligned_cols=180  Identities=11%  Similarity=-0.049  Sum_probs=120.0

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+..+............+|.++ +++|.++.+            .........++..++.++.|+++||+|||++++.+
T Consensus        20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (399)
T PRK05122         20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG   87 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence            34444444444555556677655 456777654            44567777888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      .++.+++.+.+................++...++.+.+.....+....+..|.+|++.|++++++......+|..+++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  167 (399)
T PRK05122         88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL  167 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence            87776665544433210000001122344444445544444455555667899999999999999988888899999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  309 (338)
                      .+.+.             +..||+..+++.++..++..+.....|+
T Consensus       168 ~~~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        168 GVLLY-------------HWGGLAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             HHHHH-------------HcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99887             5778998887766665554444333343

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=3.3e-12  Score=113.73  Aligned_cols=173  Identities=14%  Similarity=0.122  Sum_probs=111.4

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-HH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-IG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~  183 (338)
                      ..+..++....+++...+.|.++++.|+++.+            .........++.+++.++.|+++||+|||+.+. .+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~  294 (402)
T TIGR00897       227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFG  294 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence            33444555667788888999999888887754            233455567788899999999999999888764 23


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      .+.+.++.+.+.......  .++ ........+..+....+..+ ......|..| +.|++++|+.+....+++.++|.+
T Consensus       295 ~l~~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i  369 (402)
T TIGR00897       295 GVGCGIFTLALYYIPQHF--GHS-FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAI  369 (402)
T ss_pred             HHHHHHHHHHHHHHHHcc--CCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            233333322222211000  011 22222222222222222223 2344567655 589999999999999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      .+.+.             +..|+...+++.+++.+++.+...++
T Consensus       370 ~g~l~-------------~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       370 AVLFI-------------GFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHH-------------hhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            99998             56788999998888877776655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.46  E-value=5.7e-13  Score=120.35  Aligned_cols=158  Identities=13%  Similarity=0.063  Sum_probs=111.6

Q ss_pred             hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      ..++...+.|.+.+++|+++.+            .........++..++.++.|+++||+|||++++.+.++.++..++.
T Consensus        34 ~~~~~~~~~~~i~~~~g~s~~~------------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~  101 (455)
T TIGR00892        34 FPKAVTVFFKELQQIFQATYSE------------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA  101 (455)
T ss_pred             hhcchhhhHHHHHHHhCcchhH------------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH
Confidence            3456677889998998888766            2224444555556778889999999999999999887777776666


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                      ++...       .........++.+.+.....+....++.+.+| +.|+++.|+.+....+|..++|.+.+.+.      
T Consensus       102 ~~~~~-------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~------  167 (455)
T TIGR00892       102 SFSSN-------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF------  167 (455)
T ss_pred             HHhhh-------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH------
Confidence            55431       12222222233333222222344466778886 78999999999999999999999999887      


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                             +..||+.+|++.+++.+++.+..+
T Consensus       168 -------~~~gwr~~f~~~~~~~~~~~v~~~  191 (455)
T TIGR00892       168 -------ESFGWRGSFLILGGLLLHCCVCGA  191 (455)
T ss_pred             -------HHhChHHHHHHHHHHHHHHHHHHH
Confidence                   577999999998887776655444

>PRK09952 shikimate transporter; Provisional

Probab=99.45  E-value=3e-12  Score=115.23  Aligned_cols=153  Identities=10%  Similarity=-0.011  Sum_probs=104.7

Q ss_pred             HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeee
Q 036040          154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVP  233 (338)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
                      ....++..+|+++.|+++||+|||+.+..+.++.+++.++.++...+..........++...++.+.+..+..+....++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            34556778899999999999999999999999988888888776532100000011344455666666666666677899


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          234 AEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       234 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      .|.+|++.|+...+.......+|..+++.+...+....+.     .....+|||..|++.+++.++...+....||++
T Consensus       151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~-----~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~  223 (438)
T PRK09952        151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD-----EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA  223 (438)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999988888888888887766655321100     000257999999887766555433322566654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.45  E-value=1.7e-12  Score=115.55  Aligned_cols=136  Identities=13%  Similarity=0.046  Sum_probs=81.1

Q ss_pred             HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHH---HHHHhhccCccceee
Q 036040          154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYA---LTFFFANFGPNSTTF  230 (338)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  230 (338)
                      ....++.+++.++++++.||+|||+.+..+.....+..+.+......   .++.........   +..+.......+...
T Consensus       253 ~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  329 (402)
T PRK11902        253 TLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT---PKHLWTMALAIGIENLCGGMGTAAFVALLM  329 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445677889999999999999998877665554443333221100   011121121111   122222333344455


Q ss_pred             eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040          231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  309 (338)
                      .++++.+|.+.+    ++......++...++.+.+.+.             +..||+..|.+.++++++++++....+.
T Consensus       330 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~-------------~~~G~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        330 ALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV-------------EAYGWPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH-------------HHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            667777775544    5555555667776667888887             6789999998888888777666554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.45  E-value=9.1e-13  Score=114.79  Aligned_cols=167  Identities=18%  Similarity=0.164  Sum_probs=128.7

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      .+..+......+......|.+.++.|.++.+            .........++.+++.++.|+++||+|||+.+..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~   72 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLL   72 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHH
Confidence            3445556667777788888888887776654            4446777788888999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      +..++.+......       + ........++.+.......+....+..|.+|++.|+++.++......+|..+++.+.+
T Consensus        73 ~~~~~~~~~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  144 (352)
T cd06174          73 LFALGSLLLAFAS-------S-LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG  144 (352)
T ss_pred             HHHHHHHHHHHhc-------c-HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            8888777766543       1 3344444555555555556777788999999999999999999999999999999999


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      .+.             +..+|+..+++.+++.++..+...
T Consensus       145 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         145 LLA-------------ESLGWRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHH-------------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence            987             456788888887777666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.44  E-value=2.7e-12  Score=113.93  Aligned_cols=193  Identities=11%  Similarity=0.063  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI  179 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~  179 (338)
                      .++...+.++......+......+.+.+ ++|+++.+            .....++..++..++.+..|++.||+|.|++
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v  102 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------------LFLLTALPSVSGALLRVPYSFMVPIFGGRRW  102 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            4455555555556666666666666655 67887766            2335555666666777888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      +.++.++.++..+..++...   +..++...+.+..++.+.. .+..+.....+++++|++.||++.|+....+++|..+
T Consensus       103 ~~~~~ll~~i~~~~~~~a~~---~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l  178 (462)
T PRK15034        103 TVFSTAILIIPCVWLGIAVQ---NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV  178 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHc---ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence            99998888887777765420   0112234444444444443 3345667778999999999999999998888888887


Q ss_pred             HHHHHHHhhh-----ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          260 GAFGFLYAAQ-----DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       260 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      ++++.+.+..     ............+..+++.+.++.+.+.++..++.+ +.++
T Consensus       179 ~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        179 MQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7777665431     000000000001245688888778777776666655 4444

>TIGR00898 2A0119 cation transport protein

Probab=99.44  E-value=4.6e-13  Score=122.93  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=118.9

Q ss_pred             ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040          121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH  200 (338)
Q Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .+.|.+.++++++.+.         ........+...++.+++.++.|+++||+|||++++++.++.+++.++.++... 
T Consensus       110 ~~~~~i~~e~~l~c~~---------~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~-  179 (505)
T TIGR00898       110 TFSSTIVTEWDLVCED---------AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN-  179 (505)
T ss_pred             cccccEEEEecceech---------HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc-
Confidence            3445555566665211         012445777788899999999999999999999999998888877777665442 


Q ss_pred             cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 036040          201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                             ...+.+..++.+++..+..+...+++.|.+|++.|+.+.++......+|.++++.+...+.            
T Consensus       180 -------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------------  240 (505)
T TIGR00898       180 -------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------------  240 (505)
T ss_pred             -------HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence                   3445555566666666667788899999999999999999998888888888888766553            


Q ss_pred             CCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          281 PAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                          +|+..+++.+++.++..+..+++||+.
T Consensus       241 ----~wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       241 ----DWRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence                399999988888777766666788864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.44  E-value=1.2e-12  Score=118.02  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=78.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++.+++++++||+|+|+.+..+.++.+++.+.+.+..      ++ ........++.+++.....+..++
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG------SN-LPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc------hh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788888999999999999999999888777666655544321      11 222222223333333333455667


Q ss_pred             eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +.+|..|       ++.+|.+.|+.++...+|..+++.+.+.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777764       56789999999999999999999999998754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.44  E-value=1.5e-12  Score=115.64  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=118.4

Q ss_pred             HHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040          108 TWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF  186 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  186 (338)
                      ..++.....+....+.+.++ ++.|+++.+            .+.......+...+..+++|+++||+|||++++.+.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVM------------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            33444444555556666655 456777654            33355555666666788999999999999999999888


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY  266 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  266 (338)
                      ..+.++++....       + ...+....++.+.......+...+++.|.+|++.|+++.|+......+|..++|.+.+.
T Consensus        86 ~~~~~~~~~~~~-------~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~  157 (400)
T PRK11646         86 RAAGFATMAIAH-------E-PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSW  157 (400)
T ss_pred             HHHHHHHHHHhc-------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777765543       1 23333334444443333445556778999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +.              ..+|+..|++.++..++..+... +.||.
T Consensus       158 l~--------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        158 LL--------------QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HH--------------HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            85              45899999887777666554433 55653

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.44  E-value=3.9e-12  Score=108.35  Aligned_cols=178  Identities=19%  Similarity=0.199  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .+.+++.++.....+-+++.++|.++++ .|.++.+            +........+.+.+..+++|+++||+|.++++
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~  287 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVT  287 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------------HHHHHHHHHHHHHHHHhccchhhhhccchhHH
Confidence            3456667777777888889999999887 5766654            33466666666677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .+....++++..+.++.........+.......+.....+.+.| ....+.++..++|.+. |.+.|+....+.+|+++-
T Consensus       288 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~l  365 (417)
T COG2223         288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFL  365 (417)
T ss_pred             HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC-cchheeechHHHHhhh-hHHHHHHHHhccccccch
Confidence            99988888888877765422111122233333333333333333 3456788898998755 888999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      |...+...+            ....+..+|+++..+.+++.++.+
T Consensus       366 p~~~g~~~~------------~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         366 PLAFGVSLD------------LTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             hHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999984            223488999999999888888766

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.43  E-value=2.1e-12  Score=114.64  Aligned_cols=156  Identities=16%  Similarity=-0.009  Sum_probs=118.4

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..++......|.+.+++|++..+            .........++..++.++.|+++||+|||+++..+..+.+++.++
T Consensus        23 ~~~~~~~~~lp~i~~~~~~s~~~------------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~   90 (393)
T PRK09705         23 PLLTSVGPLLPQLRQASGMSFSV------------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALM   90 (393)
T ss_pred             hhhhccchhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34466778899999999888765            444667777788889999999999999999999999999999988


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      .++...        ...++...++.+.+.....+....++.+.+| +.|+.++|+.......|..+++.+.+.+.+    
T Consensus        91 ~~~a~~--------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~----  157 (393)
T PRK09705         91 RELYPQ--------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ----  157 (393)
T ss_pred             HHHCcc--------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            887653        2234444555555444445555667888887 779999999999888999999999988863    


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLL  302 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (338)
                              ...+|+..+.+.++..++..+
T Consensus       158 --------~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        158 --------HSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             --------hcCCHHHHHHHHHHHHHHHHH
Confidence                    234899887766655544433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.43  E-value=3.6e-12  Score=116.24  Aligned_cols=168  Identities=13%  Similarity=0.015  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVTI  179 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~  179 (338)
                      ++..++..++....+|+...+++.+++ ++|+++.+            +...............+++|+++|| +|||+.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~   90 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRV   90 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence            445556667777888999999999885 47776644            1222222222223334578999999 599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc--hhhhHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF--RSTCHGISAAAGKAGA  257 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~  257 (338)
                      ++++.++.+++..++.+..       +....+.+...+.+.+.+...+...+++.|.+|++.  |+.+.++.++..++|.
T Consensus        91 ~~~g~~~~~ig~~l~~~~~-------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~  163 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWSG-------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS  163 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH
Confidence            9999888887766665432       112222222333333344445566678899998653  4567888899999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL  301 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (338)
                      .++|.+.+++.             +..||+..|.+.++..+++.
T Consensus       164 ~~gp~i~g~l~-------------~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        164 FFSMLATPWLA-------------AKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHH-------------HhhCHHHHHHHHHHHHHHHH
Confidence            99999999997             57799999988775444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=6.5e-13  Score=118.90  Aligned_cols=170  Identities=12%  Similarity=-0.028  Sum_probs=116.2

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..........|.+.++.+.++.+            .........++.+++.++.|+++||+|||+++..+.++.+++...
T Consensus        31 ~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~   98 (417)
T PRK10489         31 FGLGLLGVAVPVQIQMMTGSTLQ------------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG   98 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence            33444556677777776655533            455777778888899999999999999999988877666665554


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      +......   ..+....+.+..++.+.+.....+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.     
T Consensus        99 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~-----  170 (417)
T PRK10489         99 LALNAFL---PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI-----  170 (417)
T ss_pred             HHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----
Confidence            4332100   01222333333333333322223445567899999999999999999999999999999999887     


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                              +..+|++.+++.++..+++.+..+.+|+++
T Consensus       171 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        171 --------AAGGVAWNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             --------HHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                    456888888877776666665555666653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.41  E-value=3e-12  Score=113.97  Aligned_cols=190  Identities=11%  Similarity=0.004  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      +.++..++...+.........|.+.+++|.++.+            .........++.+++++..|++.||+|||+.++.
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~   73 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL   73 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            3444555555555555667888888888887755            4557788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +.++.+++.++......     .+....+....++.+.+.....+....++.+..|++.|++..++.+....+|..+++.
T Consensus        74 g~~l~~~g~~l~~~~~~-----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~  148 (410)
T TIGR00885        74 GLFLYALGAFLFWPAAE-----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMV  148 (410)
T ss_pred             HHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888887766543321     0123333444444444444444555567788899999999999999999999999999


Q ss_pred             HHHHhhhccccC-------CCCCC------CCCCcchHHHHHHHHHHHHHhHhhee--eccc
Q 036040          263 GFLYAAQDQDKS-------KADPG------YPAGIGIKNTLFLLAAVNVLGLLFTF--LVPE  309 (338)
Q Consensus       263 ~~~~~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e  309 (338)
                      +.+.+.......       ...+.      ..+..+|+.+|++.+++.++..++..  ..||
T Consensus       149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~  210 (410)
T TIGR00885       149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA  210 (410)
T ss_pred             HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            988775311000       00000      00124699999888877666544433  3454

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.41  E-value=1.9e-12  Score=114.81  Aligned_cols=154  Identities=10%  Similarity=0.054  Sum_probs=110.6

Q ss_pred             ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040          121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH  200 (338)
Q Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      ...+.+.++++.++..            ..+......+...++.+++|+++||+|||++++++.++..++.+++....  
T Consensus        24 ~~~~~~~~~~~~s~~~------------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~--   89 (393)
T PRK11195         24 FAAIALLKELHYPDWS------------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI--   89 (393)
T ss_pred             HHHHHHHHHcCCcHHH------------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--
Confidence            3344455666655433            34466667778888899999999999999999999888777665544332  


Q ss_pred             cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 036040          201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY  280 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  280 (338)
                           + .   .+..++.+.+.....|...+++.|++|++.|+++.|+......++..+||.+.+.+.+           
T Consensus        90 -----~-~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----------  149 (393)
T PRK11195         90 -----H-P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----------  149 (393)
T ss_pred             -----H-H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence                 1 1   2333445555566677888899999999999999999999999999999999999973           


Q ss_pred             CCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          281 PAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                         ..|+..+.+.+.+.+++.+....+||.+
T Consensus       150 ---~~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        150 ---PHAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence               2366666666555444444444677654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.41  E-value=5e-12  Score=107.66  Aligned_cols=173  Identities=13%  Similarity=0.078  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .++...+.........+......+.+-+++|+|+.|            -..+.++..+.+.+..++-|++.||+|.|++.
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------------~~ll~aiPil~GallRl~~g~l~drfGgR~~~   82 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWT   82 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence            334444444445555666666666666778888877            34477778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      +.+.++..+-++.+++...+     .+...++.+.++.+. .++...+...++++.||++.+|.++|+.. .+|+|..+.
T Consensus        83 ~~s~~l~~IP~~~~~~a~~~-----~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          83 ILSMLLLLIPCLGLAFAVTY-----PSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             HHHHHHHHHHHHHHHHHccC-----CchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence            99998888888888776632     112334444444343 34455677788999999999999999999 999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcc---hHHHHHHHHHHHHHhHhhee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIG---IKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  305 (338)
                      .++.+.+.             ...+   |+.+..+..+..++..+..+
T Consensus       156 q~~~P~v~-------------~~~g~~~w~~~~~i~~~~l~v~~v~~~  190 (417)
T COG2223         156 QLVAPLVA-------------VAFGFLAWRNVAGIYVVALAIAAVLAW  190 (417)
T ss_pred             HHHHHHHH-------------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988             5666   88888888777777666555

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=3.2e-12  Score=116.46  Aligned_cols=179  Identities=16%  Similarity=0.094  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----c
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----G  175 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g  175 (338)
                      ..+...+..+.+....+.....+|.++++.|.+..+           .+. ...+ ... .++.+++|+++||+     |
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~-----------ig~-~~~~-~~~-~~~~~l~gpl~Dr~~~~~~G   78 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT-----------IGF-FSLV-GQA-YVFKFLWSPLMDRYTPPFLG   78 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH-----------HHH-HHHH-HHH-HHHHHHHHHHHHcccccCCC
Confidence            344555556666667777777888888887766544           111 1111 111 15788999999999     9


Q ss_pred             hHHH-HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040          176 RVTI-QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK  254 (338)
Q Consensus       176 rr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~  254 (338)
                      ||+. +..+.+..+++...+++...     ......+....++.+++.....+...++..|++|++.|+++.++......
T Consensus        79 rrr~~ll~~~i~~~~~~~~~a~~~~-----~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~  153 (491)
T PRK11010         79 RRRGWLLATQLLLLVAIAAMGFLEP-----GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYR  153 (491)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence            8875 55666555555555554321     12233333333333444445556677889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCC-CcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          255 AGAIIGAFGFLYAAQDQDKSKADPGYPA-GIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      +|.++++.+...+.             + ..||+..|++.+++.++..+..++.||+.
T Consensus       154 lG~llg~~l~~~l~-------------~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        154 LAMLVSGGLALWLA-------------DRYLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHHHHHHHHHHH-------------hcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999998887             4 46999999998888777766555667764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.40  E-value=2.2e-12  Score=112.94  Aligned_cols=138  Identities=9%  Similarity=0.003  Sum_probs=87.5

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      .+..++....++....+.|.++++.|+++.+           .+........++.+++.+++|++.||+|||+.++.+.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-----------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       215 LLLIVLYKLGDSAATVLTTLFLLDMGFSKEE-----------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3334444566677778888888887777654           22233334445677889999999999999999888877


Q ss_pred             HHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK  254 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~  254 (338)
                      +.++...+..+........   .+.........++..+......+...++.+|.+|++.|++.+|+.+...+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            6666555444321100000   01122233333333443444556778899999999999999999877553

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=3.9e-12  Score=113.27  Aligned_cols=148  Identities=14%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      ..+..+......+....+.+.++++.|+++.+            .........++..++.+++|++.||+|||+++..+.
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~   85 (402)
T TIGR00897        18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGL   85 (402)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            33333444444444555777788888888765            334667778888999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH-HHHHHH
Q 036040          185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA-IIGAFG  263 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~~~  263 (338)
                      .+.+++.++......    ..+....+.....+.+.+.....+.....+.+.+|++.|++++|+.++...+|. .++|.+
T Consensus        86 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897        86 LLWCVGHAAFIVFGL----GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHHHHHHhc----cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776554422110    001122233333333332222223344556788999999999999999988886 578888


Q ss_pred             HHHhh
Q 036040          264 FLYAA  268 (338)
Q Consensus       264 ~~~~~  268 (338)
                      .+.+.
T Consensus       162 ~~~l~  166 (402)
T TIGR00897       162 SSYAI  166 (402)
T ss_pred             HHhcc
Confidence            87776

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=1.5e-11  Score=109.74  Aligned_cols=137  Identities=10%  Similarity=-0.041  Sum_probs=82.0

Q ss_pred             hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      .+....+.|.++.+ .|+++.+            .........++.+++.++.++++||+++|+.+..+.+...++..++
T Consensus       231 ~~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~  298 (406)
T PRK15402        231 LLAWIALSPVILISGEQLSSYE------------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLA  298 (406)
T ss_pred             HHHHHHHhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            33444556766544 5665533            2223344455677889999999999999999888877666655555


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ......  .. ..........++.+.+.....+....... ..+++.|++..++.+....++..+++.+.+.+.
T Consensus       299 ~~~~~~--~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        299 ALATVI--SS-HAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             HHHHHc--cc-ccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            443210  01 11222222222222222222222222222 234488999999999999999999999999986

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=1.8e-11  Score=108.33  Aligned_cols=154  Identities=10%  Similarity=-0.014  Sum_probs=95.6

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..+.....+.|.+.++.|+++.+            .........++.+++.++.+++.||+|+|+.+..+.+..++..++
T Consensus       219 ~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~  286 (382)
T PRK11128        219 GSHAAYYGFSAIYWQAAGYSAST------------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL  286 (382)
T ss_pred             HHhHhHHHHHHHHHHHCCCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            33444556667777777776543            222444556677788889999999999999988887776666555


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhhccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQDQD  272 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~  272 (338)
                      +....       + ....+...++.++......+....+..+. +++.+++..++.+.. ..+|..++|.+.+.+.    
T Consensus       287 ~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~----  353 (382)
T PRK11128        287 MGSTT-------A-LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY----  353 (382)
T ss_pred             HHhhh-------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            54332       2 22223333333332222234444566666 555568888887643 4567789999999998    


Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040          273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLL  302 (338)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (338)
                               +..|. ..++..+++.+++++
T Consensus       354 ---------~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        354 ---------QHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             ---------HhccH-HHHHHHHHHHHHHHH
Confidence                     45666 355555666555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.38  E-value=7.2e-12  Score=109.86  Aligned_cols=130  Identities=11%  Similarity=0.002  Sum_probs=93.6

Q ss_pred             ccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040          121 LFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH  199 (338)
Q Consensus       121 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+.|.+.++ .|+++.+            .........++.+++.++.+++.||.|||+.+..+....+++...+.+.. 
T Consensus       232 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-  298 (365)
T ss_pred             HHhHHHHHHHhCCchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-
Confidence            567777776 5665543            33456667778888999999999999999998887666665555544332 


Q ss_pred             hcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          200 HWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                            +......+..+..+++.....+...++..|.+|++.|+++.|+.+....++..+++.+.+.+.+
T Consensus       299 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 ------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1122233333333444444456677888999999999999999999999999999999998873

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.38  E-value=1.3e-11  Score=109.24  Aligned_cols=152  Identities=12%  Similarity=0.088  Sum_probs=91.6

Q ss_pred             ccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040          121 LFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH  199 (338)
Q Consensus       121 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      .+.+.++.+ .|+++.+            .........++.+++.++.+++.||+|+|+.+..+..+..++.+++.....
T Consensus       220 ~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (382)
T PRK10091        220 SYIKPYMMFISGFSETS------------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG  287 (382)
T ss_pred             HHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            344444543 5666644            444667777888899999999999999999988877666655544432221


Q ss_pred             hcccccchhhHHHHHHHHHHhhccCccc-eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040          200 HWIQKHNSTGFVVMYALTFFFANFGPNS-TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP  278 (338)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  278 (338)
                            +.........+ .+.+..+..+ .......+..|.+.++.+  ..+....+|..++|.+.+.+.+         
T Consensus       288 ------~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~---------  349 (382)
T PRK10091        288 ------MKTASLIFAFI-CCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT---------  349 (382)
T ss_pred             ------hHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH---------
Confidence                  11122222121 1211112222 122234455555555554  3466778999999999999984         


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          279 GYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                         ...+|+..+.+.++.+++......
T Consensus       350 ---~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        350 ---LGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             ---cccCcchHHHHHHHHHHHHHHHHH
Confidence               356788888877666665554444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.38  E-value=4.7e-12  Score=111.63  Aligned_cols=171  Identities=15%  Similarity=0.030  Sum_probs=111.0

Q ss_pred             HHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH-HHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI-GFFF  186 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~  186 (338)
                      .+...+........+|.+++ ++|.++.+            .........+...+..++.|.++||+|||+.++. +.+.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~   73 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAM------------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLL   73 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            44455555556666777654 56776654            3335556667777788899999999998887654 4443


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhh--HHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTC--HGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~g~~~~~~~~  264 (338)
                      ..++.++..+..       + ...+.+..++.++......+....+..|..|++.|+.+  .+.......+|..+++.+.
T Consensus        74 ~~~~~~~~~~~~-------~-~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~  145 (375)
T TIGR00899        74 AALACLLFAWNR-------N-YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLA  145 (375)
T ss_pred             HHHHHHHHHhcc-------h-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHH
Confidence            344444444332       1 22223333333333333445555667788887777654  5777777889999999999


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      +.+.             +..+|+..|++.+++.++..+..+ ++||.+.
T Consensus       146 ~~l~-------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       146 FWLA-------------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHH-------------HhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9887             567999999998887777666555 5777543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1.4e-11  Score=112.14  Aligned_cols=140  Identities=10%  Similarity=0.002  Sum_probs=92.3

Q ss_pred             HhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML  192 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  192 (338)
                      ..+.....+.|.+++. .|.++..            .........++.+++.++.+++.||+|||+++..+..+.++...
T Consensus       275 ~~~~~~~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~  342 (471)
T PRK10504        275 IGSGMLPFMTPVFLQIGLGFSPFH------------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSL  342 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            3344455567777774 5665533            33455666777777778999999999999999888776666655


Q ss_pred             HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      ++.+...    . ..........+..+.+.....+....+..+..|++.|+.+.|+.++...+|..+++.+.+.+.+.
T Consensus       343 ~~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        343 LFMLVAL----L-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHhccc----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543221    1 11111112222222222222334456677889999999999999999999999999999988753

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.38  E-value=2.8e-12  Score=96.18  Aligned_cols=134  Identities=19%  Similarity=0.248  Sum_probs=99.5

Q ss_pred             HHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040          156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE  235 (338)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  235 (338)
                      ..++.+++.++.|++.||+|||+.+..+.....++.+......       + ........++.+.......+....+..|
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-------N-ITVLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4456667888999999999999999988777776666555432       1 2223333333343334445566778899


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      .+|++.|+++.++.+....+|..+++.+.+.+.             +..+|+..+.+.+.+.+++.+..+ +.||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-------------QFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-------------cccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999999999987             567888888888877777766655 55553

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.37  E-value=1e-11  Score=110.43  Aligned_cols=131  Identities=18%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......+...++....+++.||+|||+.+.++.++.++...+.....       +... +....++.+............
T Consensus       259 ~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-------~~~~-~~~~~~l~g~~~~~~~~~~~~  330 (396)
T TIGR00882       259 VTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-------TALE-VVILKMLHAFEVPFLLVGCFK  330 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-------ChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            44455666677788899999999999998888776666555433322       2122 222222222222111222334


Q ss_pred             eecccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          232 VPAEIFPARFRSTCHGI-SAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      +..+..|++.++++.+. .+....+|+.+++.+.+.+.             +..|++.+|.+.+++.++..+.
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~-------------~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY-------------DSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH-------------HhcccHHHHHHHHHHHHHHHHH
Confidence            56777888888887766 56788999999999999998             5678999999888777666544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.37  E-value=8.3e-12  Score=114.99  Aligned_cols=141  Identities=20%  Similarity=0.259  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040          148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS  227 (338)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      ......++..++.++|++++|+++||+|||+++++++++..++.++.++...        .....++.++.+++..+...
T Consensus       119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~--------~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN--------YWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhccchhH
Confidence            3455778889999999999999999999999999999999988877777664        55677777888888888888


Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      +.+.+.+|+++++.|+.+..+ ....+.++.+++...+++.             .  +||+.+++..+..++.+++.++.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------------~--~Wr~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------------R--DWRWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------h--hHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999 8888899999999999986             3  89999999998888887775566


Q ss_pred             ccCCC
Q 036040          308 PEPNG  312 (338)
Q Consensus       308 ~e~~~  312 (338)
                      ||+++
T Consensus       255 ~Es~r  259 (521)
T KOG0255|consen  255 PESPR  259 (521)
T ss_pred             CcChH
Confidence            68653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.36  E-value=8.7e-12  Score=116.41  Aligned_cols=190  Identities=12%  Similarity=-0.043  Sum_probs=134.5

Q ss_pred             HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT  188 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  188 (338)
                      .+.............+.+-+++++++.+.+.            +.+...++.+++.++.+++.||.|||+++.++.++++
T Consensus        42 ~~~~~~~~g~~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~  109 (633)
T TIGR00805        42 QLQGLLYNGLVNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHH
Confidence            3333333344455667787888988877444            6777788888899999999999999999999999999


Q ss_pred             HHHHHHHhhhhhc----cc-------------------------------------c--cchhhHHHHHHHHHHhhccCc
Q 036040          189 VFMLALAIPYHHW----IQ-------------------------------------K--HNSTGFVVMYALTFFFANFGP  225 (338)
Q Consensus       189 ~~~~~~~~~~~~~----~~-------------------------------------~--~~~~~~~~~~~~~~~~~~~~~  225 (338)
                      ++.++.+++....    ..                                     .  ......+++..++.+.+....
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            9998887764110    00                                     0  002334555667777777777


Q ss_pred             cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC--------CCCCCCCCCc-chHHHHHHHHHH
Q 036040          226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS--------KADPGYPAGI-GIKNTLFLLAAV  296 (338)
Q Consensus       226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~  296 (338)
                      .+...+++.|.+|++.|+...|+.+....+|..+|+.+.+.+.+...+.        ..+|.-+... +|+..|++.+++
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l  269 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV  269 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999999999999999999887532111        0111111112 377788888877


Q ss_pred             HHHhHhheeecccC
Q 036040          297 NVLGLLFTFLVPEP  310 (338)
Q Consensus       297 ~~~~~~~~~~~~e~  310 (338)
                      .++..+..+++|++
T Consensus       270 ~~l~~v~l~~~p~~  283 (633)
T TIGR00805       270 ALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHhCccc
Confidence            77766555555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.36  E-value=3.2e-11  Score=102.90  Aligned_cols=177  Identities=15%  Similarity=0.109  Sum_probs=130.1

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+.++...-+..+...+...+.. ++|++..+            -..+.....+..++|++++|++.||+|.|++++.+
T Consensus       257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~  324 (438)
T COG2270         257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG  324 (438)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence            334444444445555555556665 57887766            33466777888889999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      .++..+.++...+...        ..-...+.++.+...++.++.+-++..++.|+++-++.+|+++..++.+++++|.+
T Consensus       325 lvi~~~~~~~~~~~~~--------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l  396 (438)
T COG2270         325 LVILSIAALYLIFLEG--------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL  396 (438)
T ss_pred             HHHHHHHHHHHHHccc--------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence            7777666655544331        22334444555566677788899999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCC
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGR  313 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  313 (338)
                      .+.+.+            -..+-+..+....++..++++....+|+.+++
T Consensus       397 v~v~t~------------iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         397 VAVITQ------------ITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             HHHHHH------------HhcchhhHHHHHHHHHHhhHhhEEeecCCCCc
Confidence            999985            23346677777777777888877777766443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.35  E-value=3.7e-11  Score=106.70  Aligned_cols=176  Identities=16%  Similarity=0.150  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      +.+.+.+++.+..+.++..++|.+.++ .++...            ......+..+...++.+++|+++||+|+|+++.+
T Consensus       255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~  321 (462)
T PRK15034        255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI  321 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence            445666667677777788888988776 222111            1112333456667788899999999999999998


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc---------------------cc
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA---------------------RF  241 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~  241 (338)
                      +.+.+.++...+..... .....+.......+..+..+.+.+ ....+-++...+|+                     +.
T Consensus       322 ~~i~~~i~~~~~~l~lp-~~~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~  399 (462)
T PRK15034        322 NFIFMAIFSALLFLTLP-GTGSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE  399 (462)
T ss_pred             HHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence            87766665543322221 000011122222222222222333 33455677788874                     14


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          242 RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       242 R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      -|.+.|++...+.+|+++.|.+++...+            ...++...|+.+.+..+++.++.+
T Consensus       400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        400 TAAALGFISAIGAVGGFFIPQAFGMSLN------------MTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHH------------HcCCcHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999888874            334578888888888888877766

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.35  E-value=3.8e-11  Score=109.66  Aligned_cols=148  Identities=12%  Similarity=0.018  Sum_probs=99.8

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      .+..+.....+++...+.|.++++ .|+++.+            +........++.+++.+++|++.||+|||+.+..+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~  328 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL  328 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            333444555666777788888877 5766644            444667778888899999999999999999988887


Q ss_pred             HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      .+.+++..++.+...    ............++.+++.....+.......+..|++.|+++.|+.++...+|+.+++.+.
T Consensus       329 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       329 ILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            766666655542211    1111222222222222222222223344556778999999999999999999999999999


Q ss_pred             HHhhh
Q 036040          265 LYAAQ  269 (338)
Q Consensus       265 ~~~~~  269 (338)
                      +.+.+
T Consensus       405 g~~~~  409 (485)
T TIGR00711       405 TTILT  409 (485)
T ss_pred             HHHHH
Confidence            98873

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.34  E-value=2.1e-11  Score=107.80  Aligned_cols=147  Identities=10%  Similarity=-0.065  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      ++.+.+..+...........+.|.+.++.|.+..+            .+.......++..++.++.|+++||+|||+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~   75 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY   75 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34455555566667777788899999998887654            455777778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .+.++.+++..+..+...        ...+.+..++.+.+.....+.....+.+..|++.|+++++.......+|..+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  147 (381)
T PRK03633         76 LASLIFAAGCAGLGLMVG--------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ  147 (381)
T ss_pred             HHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888877766655432        333344444444444343444444556788889999999999999999999999


Q ss_pred             HHHHHhh
Q 036040          262 FGFLYAA  268 (338)
Q Consensus       262 ~~~~~~~  268 (338)
                      .+.+.+.
T Consensus       148 ~~~~~l~  154 (381)
T PRK03633        148 LLVSKVS  154 (381)
T ss_pred             HHHhccc
Confidence            9998875

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.34  E-value=1e-10  Score=103.52  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=84.6

Q ss_pred             hHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM  191 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  191 (338)
                      ...++....+.|.+++ +.|+++.+            .........++.+++.++.|++.||+|||+.+..+..+..++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIMGVSPSV------------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSA  286 (385)
T ss_pred             HHHHHHHHHcChHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3344555666677665 45666543            3345566677888899999999999999998888766666655


Q ss_pred             HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      +++......   ...............+.+.....+.......|..| +.|+++.++.+.....++.+.+.+.+..
T Consensus       287 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       287 VLLEITAIL---GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            554433210   00112222222222333233334455566778777 5789999999888776555555555533

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.34  E-value=1.8e-11  Score=107.20  Aligned_cols=157  Identities=8%  Similarity=0.033  Sum_probs=120.3

Q ss_pred             hhhccHHHHHHHccCCCCC-CCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040          118 SQNLFQKEIFTAVGWLPAA-HTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI  196 (338)
Q Consensus       118 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  196 (338)
                      ......|.+.+++|+++++ .+.            +......+..++.+.+|+++||+|.|+++.++.+..++..++.++
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f  111 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL  111 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3445567777789999877 443            666777777888889999999999999999999999888888887


Q ss_pred             hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 036040          197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKA  276 (338)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  276 (338)
                      ...        ...+.+..++.+.+.++.. ....++..++|++.|++++|+.+....+|.++++.+.+.+         
T Consensus       112 a~S--------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll---------  173 (511)
T TIGR00806       112 GTS--------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL---------  173 (511)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            642        4455566666666665555 7778999999999999999999999999999999999994         


Q ss_pred             CCCCCCCcchHHHHH---HHHHHHHHhHhheeeccc
Q 036040          277 DPGYPAGIGIKNTLF---LLAAVNVLGLLFTFLVPE  309 (338)
Q Consensus       277 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e  309 (338)
                           ..+||+....   +-.+...+++++.+++|.
T Consensus       174 -----~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       174 -----VTLGWISYSTLNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             -----HhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 3557765433   333444455556667774

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11043 putative transporter; Provisional

Probab=99.34  E-value=5.9e-11  Score=105.72  Aligned_cols=138  Identities=9%  Similarity=0.029  Sum_probs=84.3

Q ss_pred             hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      .++....+.|.++++.|+++.+            .........++.++|.++.+++.||+|+|+..........++.+.+
T Consensus       218 ~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~  285 (401)
T PRK11043        218 AFFAWLTGSPFILEQMGYSPAD------------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI  285 (401)
T ss_pred             HHHHHHHHhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            3445556778888877776643            2224455566777888889999999999987665554444443332


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ......  ...+ ...........++......+.......|..| +.|+++.|+.+.....++..++.+.+.+.
T Consensus       286 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        286 WLASLL--SHPS-LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHh--ccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            221110  0111 2222222222233333344445455556666 57999999999998888888998888886

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.33  E-value=4.5e-11  Score=109.30  Aligned_cols=147  Identities=14%  Similarity=0.017  Sum_probs=101.7

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      .+..+.....+++...+.|.+++. .|+++.+            +........++..++.++.|++.||+|+|+.+..+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~  332 (495)
T PRK14995        265 VVMAMTAMITLVGFELLMAQELQFVHGLSPLE------------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM  332 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            334444455566677788888876 5777754            455777778888899999999999999999888887


Q ss_pred             HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      ++.+++..++.....    . +.........++.+++.+...+.......+..|++.++.+.++.++...+|+.+|+.+.
T Consensus       333 ~~~~~~~~~l~~~~~----~-~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        333 ALSALSFYGLAMTDF----S-TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             HHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            766665554433211    1 11222222333333333333444556677889999999999999999999999999999


Q ss_pred             HHhhh
Q 036040          265 LYAAQ  269 (338)
Q Consensus       265 ~~~~~  269 (338)
                      +.+.+
T Consensus       408 g~i~~  412 (495)
T PRK14995        408 GLLLS  412 (495)
T ss_pred             HHHHH
Confidence            88864

>PRK10133 L-fucose transporter; Provisional

Probab=99.32  E-value=4.2e-11  Score=107.59  Aligned_cols=151  Identities=10%  Similarity=-0.065  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .+..+.+.++...+.......+.|.+.+++|.++.+            .........++..++.++.|+++||+|||+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l   94 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            345555666666677777888899998888887755            44577788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      ..+..+.+++.+++.....     .+....+....++.+.+.....+....++.|..|.+.|...+++.+....+|..++
T Consensus        95 ~~g~~~~~~~~~l~~~~~~-----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g  169 (438)
T PRK10133         95 ITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999888888766532110     02233444444444544444455556667787777777778899999999999999


Q ss_pred             HHHHHHhh
Q 036040          261 AFGFLYAA  268 (338)
Q Consensus       261 ~~~~~~~~  268 (338)
                      +.+.+.+.
T Consensus       170 ~~~g~~l~  177 (438)
T PRK10133        170 VVFGQSLI  177 (438)
T ss_pred             HHHHHHHH
Confidence            98877653

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.2e-11  Score=104.54  Aligned_cols=212  Identities=15%  Similarity=0.033  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q 036040           97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG  175 (338)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  175 (338)
                      ++...+....+.++.-....+.+....|.+-.-. +-+...-+++.     ........+..++.++|.++.|++.||+|
T Consensus        38 ~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps-----~i~~~Vn~~A~vGti~GQl~FG~lgD~~G  112 (538)
T KOG0252|consen   38 KHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPS-----GVLALVNAAALVGTIFGQLFFGWLGDKFG  112 (538)
T ss_pred             HHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3333444444445554455555555555433321 11111111111     23455778889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040          176 RVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA  255 (338)
Q Consensus       176 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~  255 (338)
                      ||+++...++++.++.++++.... ..........+.++..+.+.+.++-+|...++.+|....+.||.-.+...+....
T Consensus       113 RK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  113 RKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             chhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence            999999999998888886655442 1122244566677778888888888999999999999999999887776655554


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCC--CCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040          256 GAIIGAFGFLYAAQDQDKSKADPGYP--AGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS  314 (338)
Q Consensus       256 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  314 (338)
                      |...|..+.-.+..-....-..++..  ...-||..+.+.++.+++.+..-+.+|||++.+
T Consensus       192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            44444433333221111100011111  123488888877777777766666889987654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.32  E-value=3.9e-11  Score=106.14  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=104.3

Q ss_pred             hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040          118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP  197 (338)
Q Consensus       118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ....+.|.+.++.|.++..            .........++.+++.+..|++.||+|+|+.+..+.....++.+.+. .
T Consensus       218 ~~~~~lp~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~  284 (381)
T PRK03633        218 SLYGLMPLYLNHQGMSDAS------------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S  284 (381)
T ss_pred             HHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h
Confidence            3445678888876666543            23345566778888999999999999999988877666655544332 1


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040          198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  277 (338)
                      .         ..... ...+.+.......|.....+.|..|++.++...+..+....+|..++|.+.+.+.         
T Consensus       285 ~---------~~~~~-~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~---------  345 (381)
T PRK03633        285 Q---------AAMAP-ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM---------  345 (381)
T ss_pred             h---------HHHHH-HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            1         11111 1111222223345666677789999888888888888888899999999999998         


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                          +..++...|.+.+.+.++..+..+
T Consensus       346 ----~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        346 ----QNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             ----HHhCccHHHHHHHHHHHHHHHHHH
Confidence                567888888887777766655444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.31  E-value=4.8e-11  Score=105.71  Aligned_cols=155  Identities=15%  Similarity=0.079  Sum_probs=103.2

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......+...++.++.|+++||+|||+++..+.++..++.++..+...+..........++...++.+.+.....+....
T Consensus        40 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  119 (394)
T TIGR00883        40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL  119 (394)
T ss_pred             HHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence            33445555667889999999999999999999888888877776654221000000112333444455444555566778


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      ++.|.+|++.|++..++......+|..+++.+...+......     ......+|+..|.+.+++.+++.......||++
T Consensus       120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD-----DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----HHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            899999999999999999999899999998877665321100     000356899999877766666554433556543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.31  E-value=1.8e-10  Score=102.29  Aligned_cols=153  Identities=12%  Similarity=0.001  Sum_probs=90.1

Q ss_pred             hhhhhhcc-HHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLF-QKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       115 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..++...+ .|.+.++.|+++..            .........++.+++.++.+++.||.+++ .++.+..+..++...
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~  297 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDG------------LTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALV  297 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHH
Confidence            33444445 47777777877754            33355666778888999999999996544 433333332322222


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      +....       +.........++.+++.....+...+++++..|+ .+++..++......+|..+|+.+.+.+.     
T Consensus       298 l~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~-----  364 (394)
T PRK10213        298 LTLWG-------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYAL-----  364 (394)
T ss_pred             HHHHh-------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            22111       1122222233333333333334444466777774 4567777777888899999999999998     


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGL  301 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (338)
                              +..|+...+...++..++..
T Consensus       365 --------~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        365 --------DNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             --------hccChhhHHHHHHHHHHHHH
Confidence                    56777777766655544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.31  E-value=3.5e-11  Score=107.17  Aligned_cols=176  Identities=16%  Similarity=0.080  Sum_probs=121.5

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----chHH-H
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----GRVT-I  179 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~  179 (338)
                      ...++.+...+.-...-+|.++++.|++.++.+           . .......  .+..+++|+++||+     |||+ .
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-----------~-~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~   70 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-----------F-FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW   70 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-----------H-HHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence            345566666777777889999999999887622           2 2222222  46788999999999     7765 6


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      ++.+.++++++...+.+...     ......+....++..+......+...+++.|.+|++.|+++.++......+|.++
T Consensus        71 l~~~~~~~~l~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~  145 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCPP-----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV  145 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence            77777777666666554421     1112223333223334444455667788999999999999999999988999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCC
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNG  312 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  312 (338)
                      ++.+...+.+            ...||+..|++.++..++..+..++.||++.
T Consensus       146 g~~l~~~l~~------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        146 SGGLALWLAD------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HhHHHHHHHh------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            9998888862            2359999999888877666554446676543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.31  E-value=3.3e-11  Score=121.38  Aligned_cols=132  Identities=8%  Similarity=-0.087  Sum_probs=90.7

Q ss_pred             hhhhccHHHHHHH-ccCCCC-CCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          117 FSQNLFQKEIFTA-VGWLPA-AHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       117 ~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      +....++|.++.+ +|++.. .            ...+.+...++.+++.++++++.||+++++.+.++.++.+++.+++
T Consensus       249 ~~~~~~~~~~~~~~~g~s~~~~------------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  316 (1146)
T PRK08633        249 QLAQANFPAYAKEVLGLDNTFQ------------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL  316 (1146)
T ss_pred             HHHHHhhHHHHHHHhCCCcHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH
Confidence            3344556666654 566654 2            3446667778888999999999999999988887776666665555


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      .+..       + ....++..++.+++.....+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+.
T Consensus       317 ~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        317 PTAP-------S-LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHhh-------h-HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4432       1 2222233333333333334456678899999999999999999999999888887776664

>TIGR00896 CynX cyanate transporter

Probab=99.30  E-value=5.1e-11  Score=104.31  Aligned_cols=140  Identities=13%  Similarity=0.024  Sum_probs=93.0

Q ss_pred             HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTIQLIGFFFM  187 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~  187 (338)
                      ..+....+++...+.|.++++.|+++.+            .........++.+++.++.|++.||+ +||+.+..+..++
T Consensus       206 ~~~~~~~~~~~~~~lp~~~~~~g~~~~~------------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~  273 (355)
T TIGR00896       206 FGLQSGLYYSLIGWLPAILISHGASAAT------------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ  273 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence            3444556677778899999887776644            44466677888899999999999999 5666666666666


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE-IFPARFRSTCHGISAAAGKAGAIIGAFGFLY  266 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  266 (338)
                      +++.+++.+...      . ....  ..++.+++.....+...+...+ ..+++.++...++.+..+.++..++|.+.+.
T Consensus       274 ~~~~~~~~~~~~------~-~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       274 LVGLCGLLFAPM------H-GLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHHHHHhhh------h-HHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665554443321      1 1111  1222333333334443344443 3446677899999999999999999999999


Q ss_pred             hhh
Q 036040          267 AAQ  269 (338)
Q Consensus       267 ~~~  269 (338)
                      +.+
T Consensus       345 l~~  347 (355)
T TIGR00896       345 LHD  347 (355)
T ss_pred             HHH
Confidence            985

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.30  E-value=1.3e-10  Score=99.35  Aligned_cols=155  Identities=16%  Similarity=0.115  Sum_probs=102.0

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHH---ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTA---VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      .+..++....-.+...|.+.|+++   .|+++.+            +.........+..+|.+++++++||+|+|+++.+
T Consensus       146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            344444444555677788888875   2555543            4446777788888999999999999999998887


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      +..+++++.++.....       . ..... .....+++....+|...+...+.+|++ .+++.++. ..+.+|+.+.|.
T Consensus       214 ~~~l~~~~~~l~~~~~-------~-~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~  282 (310)
T TIGR01272       214 NAFLAVLLSIGAALTH-------G-YVAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPL  282 (310)
T ss_pred             HHHHHHHHHHHHHHcC-------C-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHH
Confidence            7666665553333221       1 11112 222344445555677777777877765 35666664 567789999999


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHH
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAV  296 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (338)
                      +.+.+.             +..|.+.++++...+
T Consensus       283 l~G~la-------------d~~g~~~a~~v~~~~  303 (310)
T TIGR01272       283 LQGSLA-------------DCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHH-------------HhccchHHHHHHHHH
Confidence            999997             466777777644433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.3e-11  Score=108.59  Aligned_cols=139  Identities=15%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      -..+......+.+++.+.+|++.||+|-|+++..+.++.++..++..++...      ....+++..++.+++.+...|.
T Consensus        75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lqGl~~g~~~pa  148 (466)
T KOG2532|consen   75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQGLGQGVLFPA  148 (466)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHhHHHHhHHHhh
Confidence            3446677788999999999999999999999999999999888888776632      1235677778888777777888


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ...+.+.+.|++.|++..++.....++|.+++-.+.+.+.+            ...||+..|++.++++++..++.+
T Consensus       149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~------------s~~GW~sifY~~g~~g~i~~~~w~  213 (466)
T KOG2532|consen  149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE------------SSLGWPSIFYVFGIVGLIWFILWF  213 (466)
T ss_pred             hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc------------cCCCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999983            349999999999999888877766

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=4.4e-12  Score=106.26  Aligned_cols=113  Identities=17%  Similarity=0.038  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040          148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS  227 (338)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      .++.....+.+.+++.++.+|.++||+|||+++.++.+..++...+.+....        ...++...+..+. .-+..+
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~--------F~afv~aR~l~Gi-~kgnl~  139 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN--------FAAFVLARFLGGI-FKGNLS  139 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhh-ccCchH
Confidence            4667888889999999999999999999999999998888887766665542        2223333444444 456667


Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      ++.++++|+++++.|+.+++.+.....+|-++||.+.+++..
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            888999999999999999999999999999999999999974

>PTZ00207 hypothetical protein; Provisional

Probab=99.29  E-value=6.3e-11  Score=108.20  Aligned_cols=165  Identities=13%  Similarity=0.087  Sum_probs=106.7

Q ss_pred             HHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 036040          111 LLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVF  190 (338)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  190 (338)
                      ......|++..+.|.+.+++|++..+.           +.... +....+ .+.++.|++.||+|||++++++.+...++
T Consensus        38 ~~~g~~y~fsv~s~~L~~~lgls~~~l-----------~~i~s-vg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG  104 (591)
T PTZ00207         38 ICTSFMYAFNLISGAMQARYNLTQRDL-----------STITT-VGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLG  104 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCHHHH-----------HHHHH-HHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            334556778888999988888887652           11122 212222 34556899999999999999999999988


Q ss_pred             HHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          191 MLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      .++.++......  ..+...+.+..++.+.+.....+.....+.++|| +.||++.|+......+|+.+.+.+...+.  
T Consensus       105 ~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~--  179 (591)
T PTZ00207        105 TLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF--  179 (591)
T ss_pred             HHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            888777531100  0123333333444444333333444556788887 68999999999999999876555555443  


Q ss_pred             cccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          271 QDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                                 . .+|+..|++.+++.++..++..
T Consensus       180 -----------~-~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        180 -----------S-DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             -----------H-HhHHHHHHHHHHHHHHHHHHHH
Confidence                       1 2566777777777666555544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=4.3e-11  Score=106.00  Aligned_cols=147  Identities=15%  Similarity=0.091  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      -.....+..+++++|+++.++++||+|||..+.++.++..++.++.......     +....++...++.+.........
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~-----~~~e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA-----PSFEMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHhHHHHHH
Confidence            3456777899999999999999999999999988887777776666655421     33445555556555444444455


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH-HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG-FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      ...|++|..|++.||....+......+|..++..+ .+.+..            +...|...+.+..+++++.++...++
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG------------t~~~W~~l~~~~~i~~~~~l~~l~~~  204 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG------------TEDLWPYLLAFPLIPALLQLALLPFL  204 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC------------CCcchHHHHHHHHHHHHHHHHHHhcC
Confidence            66789999999999999999888888888888544 334431            45568888888888888888888899


Q ss_pred             ccCCC
Q 036040          308 PEPNG  312 (338)
Q Consensus       308 ~e~~~  312 (338)
                      ||+.+
T Consensus       205 PESPk  209 (485)
T KOG0569|consen  205 PESPK  209 (485)
T ss_pred             CCCcc
Confidence            99754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.26  E-value=1e-10  Score=106.34  Aligned_cols=158  Identities=13%  Similarity=0.070  Sum_probs=107.3

Q ss_pred             hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML  192 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  192 (338)
                      .+........++.+..++|-++..             .++.....++..++.++.|.++|.+|||..++.+.++..++.+
T Consensus        57 ~~~~~~~a~~l~~I~~diG~~~~~-------------~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~I  123 (599)
T PF06609_consen   57 YFVLVLPASILPYINADIGGSDNW-------------SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSI  123 (599)
T ss_pred             HHHHhccHHHHHHHHHhcCCCccc-------------hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHH
Confidence            344444445566777777765543             2345556677778888999999999999999999999998888


Q ss_pred             HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 036040          193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQD  272 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  272 (338)
                      +.+.+..        ...++....+.+.+ .+........++|+.|.+.|..+.++..........+++.+...+.    
T Consensus       124 v~atA~~--------~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~----  190 (599)
T PF06609_consen  124 VCATAQN--------MNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA----  190 (599)
T ss_pred             HhhcCCc--------HHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc----
Confidence            8876552        22333333333332 2333344556899999999998887776655555556666666554    


Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                               ...+||+.|++.++...++++..+
T Consensus       191 ---------~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  191 ---------AHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             ---------cCCCcchHHHHHHHHHHHHHHHHH
Confidence                     456899999988887777665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.26  E-value=2.7e-10  Score=100.57  Aligned_cols=133  Identities=17%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..+....+.|.+..+ .|+++.+            .........++.+++.++++++.||+|||+.+..+..+..+..+.
T Consensus       209 ~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~  276 (377)
T PRK11102        209 GMFSFLTAGPFVYIELNGVSPQN------------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIW  276 (377)
T ss_pred             HHHHHHHcCHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            344444455655544 5666543            344566777788889999999999999999988876654443332


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH-HHHHHHHHHH
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK-AGAIIGAFGF  264 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~g~~~~~~~~  264 (338)
                      +......   +.......+......+. .....+....+..|..| +.|+++.++.+.... +|..+++.+.
T Consensus       277 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        277 LVVSALL---DLGFWALVVGVAAFVGC-VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHH---hhhHHHHHHHHHHHHHH-HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221100   00111111111121111 12222233345677766 788999998876544 4555555543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.26  E-value=1.4e-10  Score=103.01  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      .......++.+++.++.+++.||+|||+.+..+..+..++.+++.....       .........+...+...+. +.  
T Consensus       243 ~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~-~~--  312 (392)
T PRK10473        243 IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------HAVSLFGITLICAGFSVGF-GV--  312 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-HH--
Confidence            3556667778888999999999999999998887776666665554331       1111121111111111221 11  


Q ss_pred             eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ....+..|.+.|+   |.......++..+++.+.+.+.
T Consensus       313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence            2234555655553   3344444566677777777766

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.25  E-value=2.7e-11  Score=105.74  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=90.1

Q ss_pred             HhHhhhhhhccHHHH-HHHccCC-CCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          112 LDVSYFSQNLFQKEI-FTAVGWL-PAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       112 ~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      ....++....+.|.+ .+..|++ ..            .......+..+..+++.++.|+++||+++|+..........+
T Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  218 FFFVFSGFSFFLPLYLQEVLGFSGPS------------QAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL  285 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHCCTHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhhhhccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            334555577788887 4556666 22            244456667777777899999999999988777776665555


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      ..+.+......     ..........++.+++.....+....+..|.+|++.|+++.|+.+...++++.++|
T Consensus       286 ~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  286 GALGLLLLPFS-----SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCCSHHH-----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55544433321     11222222333333344444677788899999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.25  E-value=4.3e-11  Score=104.85  Aligned_cols=169  Identities=15%  Similarity=0.044  Sum_probs=107.0

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----chHHHH-HHHHHHHHHHHH
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----GRVTIQ-LIGFFFMTVFML  192 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~  192 (338)
                      .....|.+.++.|++.++.           +. .... .+...+ .+++|.++||+     |||+.+ +.+.+..+++..
T Consensus         7 ~~~~~~~~~~~~g~s~~~~-----------g~-~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~   72 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTI-----------GF-FSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL   72 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHH-----------HH-HHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence            4456788888888888652           11 2211 222222 77899999998     888864 555555555555


Q ss_pred             HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 036040          193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQD  272 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  272 (338)
                      .+++...     ......+....++.........+...+++.|.+|++.|+.+.|+......+|.++++.+.+.+.....
T Consensus        73 ~l~~~~~-----~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        73 ILSFLVP-----STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHcCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            5544321     11122222332233333333445566789999999999999999999999999999999988863211


Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      .+     ....++|+..|++.+++.++..+..+ ..||++
T Consensus       148 ~~-----~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       148 AN-----TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             cc-----cccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            00     00233499999988887777666555 456653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.25  E-value=1.3e-10  Score=116.91  Aligned_cols=145  Identities=12%  Similarity=0.045  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      ..+..+...+..+++++++|+++||+|||+++........+...+...... .    .....+++..++.+.+.....+.
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-~----~s~~~l~~~~~l~gi~~a~~~p~  128 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-L----NSVPLLFAALFLMGIHSALFGPI  128 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHhhchH
Confidence            334555667777888999999999999999764422222222211111110 0    22445555666666666666788


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ..+++.+++|++.|+.++|+.++...+|.++||.+.+.+.             ...+|+..|+..+++.++++++.+++|
T Consensus       129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-------------ISGNFVILVALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-------------hccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            8899999999999999999999999999999999999998             567898888555555555555555666


Q ss_pred             cCC
Q 036040          309 EPN  311 (338)
Q Consensus       309 e~~  311 (338)
                      +++
T Consensus       196 ~~~  198 (1140)
T PRK06814        196 KTG  198 (1140)
T ss_pred             CCC
Confidence            653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=2.3e-11  Score=110.00  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RVT  178 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~  178 (338)
                      .++...+...+..++++....++|.+.++.|++..+            +.....+..+..+++.++.|+++|+..  ++.
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------------AAFLLSIIGVSDIIGRIILGLLADKPGIRALV  366 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------------hHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence            345555566667788888999999999998888876            455778889999999999999999987  455


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040          179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI  258 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  258 (338)
                      +..++.++++++.+.+.+...        ...+....++.++..+.........+.|+.+.+.-..+.|+...+..++..
T Consensus       367 ~~~~~ll~~gl~~~~~p~~~~--------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l  438 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFATT--------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL  438 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence            555665555555544444332        334444455555544444445556789999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      +||.+.+.+.+            ...+|...|+..+++.+++.+..+..+
T Consensus       439 ~gpPiag~~~d------------~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  439 VGPPIAGLLYD------------ITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cCcccceeeee------------ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999998874            233388888888888887776666555

>PRK10133 L-fucose transporter; Provisional

Probab=99.25  E-value=1.2e-10  Score=104.75  Aligned_cols=152  Identities=9%  Similarity=-0.073  Sum_probs=98.1

Q ss_pred             HhhhhhhccHHHHH-HH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIF-TA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM  191 (338)
Q Consensus       114 ~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  191 (338)
                      ...++...|.+.++ ++ .|+++.+            .........++.++|.++++++.||+|||+++..+.++.++.+
T Consensus       272 ~~~~~~~~~~~~~l~~~~~g~s~~~------------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        272 GAQTACWSYLIRYAVEEIPGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            34444445666664 43 4666644            4556777888889999999999999999999888866665554


Q ss_pred             HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040          192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ  271 (338)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  271 (338)
                      ++..+..       + .. ........+++.....|..++...+.+|++ .+++.++..+ ..+|+.++|.+.+.+.   
T Consensus       340 ~~~~~~~-------~-~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~---  405 (438)
T PRK10133        340 LISAFAG-------G-HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVS---  405 (438)
T ss_pred             HHHHHcC-------C-hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHH---
Confidence            4433321       1 11 122233344445556777888888888765 4677777754 4567888888888887   


Q ss_pred             ccCCCCCCCCCCcc-hHHHHHHHHHHHHHhH
Q 036040          272 DKSKADPGYPAGIG-IKNTLFLLAAVNVLGL  301 (338)
Q Consensus       272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  301 (338)
                                +..| .+.+|++..++.+...
T Consensus       406 ----------~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        406 ----------DAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             ----------HhccchHHHHHHHHHHHHHHH
Confidence                      4555 6777765554444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.25  E-value=1.7e-10  Score=103.16  Aligned_cols=199  Identities=13%  Similarity=-0.011  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhchH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGRV  177 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr  177 (338)
                      ++.+....+...+.+-....+.+.+++.+|.++..            .........+..++..++.|+++|    |+|||
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR   73 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence            44555556666666777777888888888886644            444667777888889999999999    59999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhhhhcc---c---ccchh---hHHHHHHHHHHhhccCccceeeeeecccCCccch--hhh
Q 036040          178 TIQLIG-FFFMTVFMLALAIPYHHWI---Q---KHNST---GFVVMYALTFFFANFGPNSTTFIVPAEIFPARFR--STC  245 (338)
Q Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~---~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R--~~~  245 (338)
                      +.++.+ .+...+++.++.+......   +   ..+..   ...+....+..+......+...++++|.+|++.|  +.+
T Consensus        74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a  153 (477)
T TIGR01301        74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIA  153 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHH
Confidence            988875 4444455455544332110   0   00111   1111111122222333344566889999998866  578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh--hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          246 HGISAAAGKAGAIIGAFGFLYAA--QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       246 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .++......+|+++++.+.+...  +..+-........-..+.+..|++.+++.+++.+... ..+|...
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            88888899999999999887652  1111000000000113678889888888887777776 7888653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.23  E-value=1.4e-10  Score=116.70  Aligned_cols=164  Identities=14%  Similarity=0.052  Sum_probs=103.7

Q ss_pred             HHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          111 LLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      ...+..+....+.|.++++ +|.++..            .+.+.+...++.++|.++.|+++|+.++++.+..+.++.++
T Consensus       236 ~~~~~~~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        236 WFWLVGAVVLSQLPLLAKETLGGDENV------------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL  303 (1140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHcCCchHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence            3334445556678888876 4665543            44467777888899999999999988877666555555554


Q ss_pred             HHHHHHhhhhh-------------cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          190 FMLALAIPYHH-------------WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       190 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      +.+.+.+....             .....+.+ .+.+..++.+++.....+...+++++.+|++.||+++|+.++...++
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~  382 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGW-RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF  382 (1140)
T ss_pred             HHHHHHhcccccccccccccchhhhhcccccH-HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence            44433332000             00001122 22223333333344444556788899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHH
Q 036040          257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL  299 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (338)
                      ..+++.+.+.+.+            ...++...+++.+++.++
T Consensus       383 ~~ig~~~~g~l~~------------~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        383 MVAGTIILALLQA------------LGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHH------------hccCHHHHHHHHHHHHHH
Confidence            9999999888863            344555555544444333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.22  E-value=4.2e-10  Score=99.89  Aligned_cols=134  Identities=7%  Similarity=-0.040  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .+.......++.++++++.+++.||.++|+.+..+.. .++...++....       + ........++.+.+.....+.
T Consensus       243 ~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-------~-~~~~~~~~~~~G~~~g~~~~~  313 (393)
T PRK11195        243 PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH-------S-LLPAYPLLILIGALGGFFVVP  313 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh-------H-HHHHHHHHHHHHHhhhhhhhh
Confidence            4446677788889999999999999998887776643 333322222211       1 222222222233322222344


Q ss_pred             eeeeecccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          229 TFIVPAEIFPARF-RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       229 ~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ..+..++..|++. +|++.++.+...+++..++..+.+.+.              ..|.+..+.+.+...++++.+.+
T Consensus       314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV--------------KLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH--------------HcCCCHHHHHHHHHHHHHHHHHH
Confidence            5566778766665 799999999999999999999988663              56666666665555555555554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=6.7e-10  Score=97.99  Aligned_cols=171  Identities=14%  Similarity=0.085  Sum_probs=107.7

Q ss_pred             hhhhhhccHHHHHHHcc-CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVG-WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ..-....|.+.++++.| .+...            ......+..++.++.-...+++..|+|.|++++++.+..++=..+
T Consensus       222 ~~~~~~~f~~~yl~~~gg~~~~~------------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  222 SHAAYYTFFSIYLQELGGYSGST------------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHcccchhhH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            33334566677888876 44322            333455667788888889999999999999999987776666655


Q ss_pred             HHhhhhhcccccchhhHHHHHH---HHHHhhccCccceeeeeecccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhh
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYA---LTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~  269 (338)
                      ++....      +.+.......   +..+............++.+..|++.|+++.++.... ..+|..+|..+.|++.+
T Consensus       290 ~a~~~~------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  290 YAYFSD------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHhcC------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            554421      1111111111   1222222222334557899999999999999998875 46799999999999985


Q ss_pred             ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      ....       ...+.|...+.+.+++.++..++.. +.+|+
T Consensus       364 ~~g~-------~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  364 AFGA-------RGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             Hhcc-------hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            3321       1233455566666666555555544 44443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.21  E-value=1.7e-10  Score=103.36  Aligned_cols=170  Identities=12%  Similarity=-0.015  Sum_probs=101.9

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      .+..++....++....+.|.++++ .|+++.+            .+...+...++..++.++.|+++||+|||+.++++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         16 SLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            344455555555667788888777 7888765            445778888899999999999999999999988765


Q ss_pred             HHHHHHHHHHHhh-hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC--ccchhhhHHHHHHHHHHHHHHHH
Q 036040          185 FFMTVFMLALAIP-YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP--ARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       185 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .+.++........ .....   . ........+.......+. ........++.+  .+.++..+|.......+|..++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLL---Q-YNILLGAIVGGIYLGFGF-LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhhhhh-ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHH
Confidence            5544333221111 00000   0 000111111111111111 111111222222  23456677888888899999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL  306 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (338)
                      .+.+.+.              ..+|+..|++.++++++..+..++
T Consensus       159 ~~~g~l~--------------~~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        159 FIAGILF--------------NINPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             HHHHHHH--------------hcCchHhHHHHHHHHHHHHHHHhc
Confidence            9999886              247888888877777776666553

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.21  E-value=4.8e-10  Score=102.98  Aligned_cols=142  Identities=19%  Similarity=0.159  Sum_probs=113.4

Q ss_pred             HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      .++.....++..++.+++|+++|++|||+.++.+.+...++.++.+.+..        ...+.+..++.+.+.++...+.
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--------~~~l~~GR~l~G~g~G~~~~~~  163 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--------WYQLIVGRILTGLGVGGASVLA  163 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhccchhhhhhcc
Confidence            45778888999999999999999999999999999999999888887763        4556666666666666666677


Q ss_pred             eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhheeecc
Q 036040          230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ..+.+|+.|++.||...+..+....+|..++ .+.+....            +. .+||..+.+..+.+++..+..+++|
T Consensus       164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~------------~~~~~Wr~~~~~~~i~~~~~~~~~~~~p  230 (513)
T KOG0254|consen  164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTS------------KVYAGWRIPLGLALIPAVILALGMLFLP  230 (513)
T ss_pred             hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhc------------cCCccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7899999999999999999988888777777 44444431            11 5899998888888888888855889


Q ss_pred             cCCC
Q 036040          309 EPNG  312 (338)
Q Consensus       309 e~~~  312 (338)
                      |+.+
T Consensus       231 esp~  234 (513)
T KOG0254|consen  231 ESPR  234 (513)
T ss_pred             CChH
Confidence            8743

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.21  E-value=1.3e-10  Score=102.23  Aligned_cols=131  Identities=17%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM  187 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~  187 (338)
                      .++.....++...+.|.++++ .|+++.+            .........+..+++.+++|+++||+|||+.+..+....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~  301 (366)
T TIGR00886       234 YSVTFGSFLGVSSIFAMFFKDQFGLSKVT------------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGV  301 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHH------------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHH
Confidence            334444556667778888865 4666644            333555667777888999999999999988777766555


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      ..+..++.+...    ...................+...+..+.+.++..| +.|++++|+.+..+++|
T Consensus       302 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       302 AMGAFLVVLGLV----SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhcCC----CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            554444433221    00012222222222222222223456677888887 68899999998877765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.21  E-value=2.3e-10  Score=103.98  Aligned_cols=154  Identities=15%  Similarity=0.094  Sum_probs=111.2

Q ss_pred             hhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040          119 QNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP  197 (338)
Q Consensus       119 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ....+|.+.++ +|.++..            -+.+....+++.++|+++.+++.+|+++++++..+.++.+++++.+++.
T Consensus       237 ~~aLlPl~a~~~l~~~a~~------------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASG------------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHH------------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            34457777765 4544433            2346677889999999999999999999888888887777777776665


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040          198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD  277 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  277 (338)
                      ..        .+......++.+++.........+..++..|++.||+++++..+....+..+|..+.|.+.         
T Consensus       305 ~~--------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la---------  367 (524)
T PF05977_consen  305 PS--------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA---------  367 (524)
T ss_pred             hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            42        2222333333344444444555677899999999999999999999999999999999998         


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                          +..|.+.++.+.++..+++.++..
T Consensus       368 ----~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  368 ----DHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             ----HHhCHHHHHHHHHHHHHHHHHHHH
Confidence                577888888776665555555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10054 putative transporter; Provisional

Probab=99.19  E-value=2.5e-10  Score=101.40  Aligned_cols=133  Identities=13%  Similarity=0.077  Sum_probs=87.3

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......+.........|.+.||.++|+.+..+.....+....+.+..       +......+..+..+.+.....+....
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        249 VLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-------NSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-------hHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            44444455556667889999999999998888766666555454321       11222222233333333333445556


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ++.+..|++.|+++.+..+ ..++|..+||.+.+.+.             +..|....|++.+.+..+..++.+
T Consensus       322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL-------------TTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH-------------HHcChhhHHHHHHHHHHHHHHHHH
Confidence            7888999999999988654 67789999999999998             466777777766655555544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.19  E-value=5.4e-10  Score=99.58  Aligned_cols=134  Identities=10%  Similarity=-0.097  Sum_probs=86.0

Q ss_pred             hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL  194 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  194 (338)
                      ...+...+++.+.++.+...+.          ..+.........+..+|.++++++.||+++|+++.+..+++.+++++.
T Consensus       247 ~e~~~~s~l~~y~~~~~~~~~~----------~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~  316 (410)
T TIGR00885       247 VQIMCWTFIIQYAVRLIPGMTA----------GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGS  316 (410)
T ss_pred             HHHHHHHHHHHHHhhccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            3334556777777664322211          112223333445567899999999999999999888877777666665


Q ss_pred             HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      ....       . ..... .....+++....+|..++...+..+++.+..+.++....  +|+.+.|.+.+.+.|
T Consensus       317 ~~~~-------~-~~~~~-~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       317 IFAG-------G-HVGLY-CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID  380 (410)
T ss_pred             HHcC-------C-hHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence            5433       1 12222 222333334444578888889999888766566665543  899999999999985

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.19  E-value=2.9e-10  Score=101.02  Aligned_cols=171  Identities=13%  Similarity=0.022  Sum_probs=101.0

Q ss_pred             HHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-HHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-IGFFF  186 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~  186 (338)
                      .+............+|.++ +++|+++.+           .+........++.+.+.+.+++ .||+|||+.++ .+.+.
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~-----------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~   91 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAM-----------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLL   91 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Confidence            3444444444555666655 456776654           2222233344455556666666 99999998754 44444


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchh--hhHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRS--TCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      .++...+..+...        ...+.......++......+....+..+..|++.|.  ...++.+....+|.+++|.+.
T Consensus        92 ~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~  163 (393)
T PRK15011         92 GVLACTLFAWNRN--------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA  163 (393)
T ss_pred             HHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3344444333321        222222222222223334455555666766665553  334677778889999999999


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      +.+.             +..||+..|++.++..++..+... ++||.++
T Consensus       164 ~~l~-------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        164 YALA-------------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHH-------------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            9997             577999999888877776666555 6777643

>TIGR00896 CynX cyanate transporter

Probab=99.19  E-value=1.8e-10  Score=100.81  Aligned_cols=152  Identities=16%  Similarity=0.033  Sum_probs=104.6

Q ss_pred             hhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040          116 YFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA  195 (338)
Q Consensus       116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  195 (338)
                      +.+....+|.+.+++|+++.+            .........++..++.++.|+++||+|||+.+..+.+...++.+.. 
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-   82 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSV------------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-   82 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence            344567889999998888765            4457778888889999999999999999999998876665554443 


Q ss_pred             hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040          196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK  275 (338)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (338)
                      ...       + ...+++..+..+.+.....+....++.|.+| +.|+++.++.+....+|..+++.+.+.+.+.     
T Consensus        83 ~~~-------~-~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-----  148 (355)
T TIGR00896        83 SAP-------G-TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH-----  148 (355)
T ss_pred             Hhc-------c-HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            211       1 2233333333333333323344456678886 5799999999999999999999988887630     


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHh
Q 036040          276 ADPGYPAGIGIKNTLFLLAAVNVLG  300 (338)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~  300 (338)
                            ...+|+..|.+.+++.++.
T Consensus       149 ------~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       149 ------SGGHWQQALAWWALPALLA  167 (355)
T ss_pred             ------hhhhHHHHHHHHHHHHHHH
Confidence                  1124888887666554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.17  E-value=6.4e-10  Score=112.15  Aligned_cols=115  Identities=11%  Similarity=0.020  Sum_probs=87.5

Q ss_pred             HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      .+..++..++.+++++++|+++||+|||++++++.++..+..++..+....     .....+++..++.+.+.....+..
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL-----GWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHhhchHH
Confidence            445666777788899999999999999999998876655555444433210     123444555555555555666777


Q ss_pred             eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .++++|++|++.|++++|+......+|.++++.+.+.+..
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999998873

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.16  E-value=4.3e-10  Score=99.50  Aligned_cols=168  Identities=14%  Similarity=0.004  Sum_probs=104.6

Q ss_pred             HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH-HH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF-FM  187 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~  187 (338)
                      +++..........++|.++++.|.+..+            .+.......+..+++.+++|.++||+|||........ ..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~   80 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT   80 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH
Confidence            3444445566677888999998887765            4446677788888899999999999998432211111 11


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      .+.........       +..+.+.+...+.+.......+...++..+.  .+.|+++.+.....+.+|..++|.+.+.+
T Consensus        81 ~~~~~~~~~~~-------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l  151 (382)
T PRK11128         81 LLFAVAFWFGA-------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL  151 (382)
T ss_pred             HHHHHHHHHhc-------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            11111111110       1233333333433443444455555555554  34578888888889999999999999999


Q ss_pred             hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                      .             +.+||+..|++.++..++..+...+.||.
T Consensus       152 ~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        152 V-------------SWFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             H-------------HHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            8             57899999987776555544443355554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.15  E-value=3.6e-10  Score=100.54  Aligned_cols=179  Identities=12%  Similarity=-0.085  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      +......++....+.....++|.++.+ .|+++.+            .........++..++.++.|+++||+|||+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~   72 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLL   72 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            334444555555666667788887765 6777654            445777888889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .+....++.......................+..+..+.......+....+..+..  +.++...|.....+.+|..++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~  150 (396)
T TIGR00882        73 WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCA  150 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHH
Confidence            77655544333221110000000000111111122222222222333333333332  2234466777788889999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      .+.+.+.              ..+|+..|++.+++.++..++.+ ..||
T Consensus       151 ~~~g~l~--------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       151 SIAGILF--------------SIDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHhhhh--------------ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9988774              45899999888877777665555 3444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=6.8e-10  Score=100.98  Aligned_cols=116  Identities=14%  Similarity=0.009  Sum_probs=74.2

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++.++.++++||+|+|+.++++.++..++.+......  .....+ ...+++..++.+.......+..++
T Consensus       271 ~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~~~l~g~~~~~~~~~~~a  347 (473)
T PRK10429        271 YLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAAPHN-ALLIVIAGILLNIGTALFWVLQVI  347 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccCchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567778888999999999999999888766554444332211  001112 222222223333333334455677


Q ss_pred             eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +++|..+       .+..|...|...+...++..+++.+.+.+.+.
T Consensus       348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888855       34456678888889999999999999988753

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3.3e-11  Score=101.65  Aligned_cols=142  Identities=15%  Similarity=0.075  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .+.......+.+++.+++.|.++||+|+|..+++|..++..+.+++++..+        +...++.....+.+.......
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--------y~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--------YPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--------hHHHHHHHHHhhhhHHHHHhh
Confidence            445777788899999999999999999999999999999999998887764        446777777777777777777


Q ss_pred             eeeeecccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-e
Q 036040          229 TFIVPAEIFPARF-RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-L  306 (338)
Q Consensus       229 ~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  306 (338)
                      ..+++++.||.+. |++++|+...+..+|..++|...+.++             +..|.+.+|+++++++++...+.+ .
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-------------e~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-------------EFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-------------hhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            7889999999875 799999999999999999999999998             688999999999999999888877 4


Q ss_pred             cccCC
Q 036040          307 VPEPN  311 (338)
Q Consensus       307 ~~e~~  311 (338)
                      ++.++
T Consensus       247 i~p~~  251 (464)
T KOG3764|consen  247 IEPTE  251 (464)
T ss_pred             eCccc
Confidence            44333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.8e-09  Score=90.42  Aligned_cols=170  Identities=16%  Similarity=0.155  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTIQL  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~  181 (338)
                      +.+.+.+-.++..+|....|+|.++.+.|++..+            ++.......+.+++.++....+.+|. .+|+..+
T Consensus       211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~  278 (395)
T COG2807         211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVV  278 (395)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            3455555667888999999999999999999977            44478888888999999999999975 4666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .....+.++.+.+.+...      +..  ... .+..+.+.++..+.....+..-. .++.-+.-.|+.+.++.+-+.+|
T Consensus       279 ~~~~~~l~G~~G~~~~P~------~~~--~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G  349 (395)
T COG2807         279 LALLLMLVGLVGLLLAPG------QLP--ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG  349 (395)
T ss_pred             HHHHHHHHHHHHHHHhhh------hHH--HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence            666666566555554431      111  111 24444445555555555555443 44566777888999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      |.+++.+.|            ...+|...+..++...++..+..+
T Consensus       350 P~l~G~lhD------------a~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         350 PWLFGFLHD------------ATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hhhHhHHHH------------hcCChHHHHHHHHHHHHHHHHHHh
Confidence            999999986            566898888888777777666655

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.12  E-value=8.4e-10  Score=98.20  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHhh
Q 036040          119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-IIGRVTIQLIGFFFMTVFMLALAIP  197 (338)
Q Consensus       119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~  197 (338)
                      ...+.|.+.++.+.++.+            .........++...+....+++.| |++.++.+..+.++.++...++...
T Consensus       227 ~~~~~p~~~~~~~~~~~~------------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~  294 (400)
T PRK11646        227 VMLMLPIMVNDIAGSPSA------------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV  294 (400)
T ss_pred             HHHhhhhhHHhhcCCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence            345678888775544432            112233333333333333455554 5666666666665555555444433


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .       + ...........+.+.....+...+++.+..|++.|++++|+.+....+|..++|.+.+.+.+
T Consensus       295 ~-------~-~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        295 S-------N-LQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             h-------h-HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            2       1 11122222222222223334556778899999999999999999999999999999999985

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.12  E-value=2.3e-09  Score=96.23  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=111.0

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ...+..++.+++.+.++.+.||+.-.+.+....+..++..++....        .....+++..++.+.+..+.+|....
T Consensus        86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--------~s~~~~ialr~llGl~es~~wP~~~~  157 (495)
T KOG2533|consen   86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--------HSFPGLIALRFLLGLFESGGWPGVVA  157 (495)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhcccchHHHH
Confidence            6667788888899999999999995555554433333333222222        22556677777777777888888889


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +++.+|.++.|+.-+|+.++...+|+++|+++...+.++..       .....||++.|++-+++.++..++.+ ++|+.
T Consensus       158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~-------~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG-------SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC-------CCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence            99999999999999999999999999999999888643111       12567999999999999998888877 88875


Q ss_pred             CC
Q 036040          311 NG  312 (338)
Q Consensus       311 ~~  312 (338)
                      ..
T Consensus       231 P~  232 (495)
T KOG2533|consen  231 PS  232 (495)
T ss_pred             hh
Confidence            54

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.11  E-value=4e-09  Score=94.49  Aligned_cols=199  Identities=13%  Similarity=-0.058  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHc--cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-hH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAV--GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-RV  177 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr  177 (338)
                      .+..+++..++.-++++.+..|.+.+..+.  +-++..  -..+.+....+.+......+...+.+++-.++.+|+| ||
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~--~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ--GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            444556666666666777777777776652  322222  1234444445666666667776777888899999998 47


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcc---c----------ccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--ch
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWI---Q----------KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FR  242 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R  242 (338)
                      .+..++.++.++++....+......   .          +.......++.....+..-....+++++++++..|++  ..
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence            7778887777777766654432100   0          0000133344444445555555778999999999954  44


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          243 STCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       243 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      |..+|+.|.+..+.+++..+..+.+.+..+           .+...++.+.++..+++.++.+ .+|+++.
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g-----------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-----------GGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            899999999999999999988777554322           1345567777788888877777 7787653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.10  E-value=5.9e-10  Score=100.93  Aligned_cols=130  Identities=14%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc-c-cc
Q 036040          129 AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ-K-HN  206 (338)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  206 (338)
                      .+|+++...+.            ......++.+++..+.+.+.+|++.|+++.++.++.+++.+........+.. . .+
T Consensus       282 ~lG~s~~~~G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~  349 (468)
T TIGR00788       282 CLPGGPSFSGM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS  349 (468)
T ss_pred             cCCCCcchhhh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC
Confidence            46788876333            5556678888899999999999999999998877776655443221111110 0 01


Q ss_pred             hhhHHHHHHHH-HHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040          207 STGFVVMYALT-FFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ  271 (338)
Q Consensus       207 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  271 (338)
                      ....+....++ ........ .....++++..|++.+++.+++.+.+.++|..+++.+.+.+.+..
T Consensus       350 ~~~~~~~~~~l~~~~~g~~~-~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       350 DEVFVLGDSIIAEVLAQLKF-MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             CeeeeeehhHHHHHHHHHHH-ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11111111111 11222222 234678899999999999999999999999999999888887544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.10  E-value=4.3e-09  Score=94.60  Aligned_cols=113  Identities=13%  Similarity=0.027  Sum_probs=87.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++.+++++++||+|+|+.+..+.++.+++.+++.+...      .......+..++.+.+..+.....++
T Consensus       265 ~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~~~~~~a  338 (428)
T PF13347_consen  265 FMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILFILAGIGYGAFFVIPWA  338 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhHhhhccccccccc
Confidence            455677888889999999999999999999998888887777665541      22444555555555556666788899


Q ss_pred             eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +.+|+.+       .+..|...|+.++...++..+++.+.+.+.+.
T Consensus       339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999987       34458888999999999999999998888753

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.10  E-value=6.3e-10  Score=101.18  Aligned_cols=139  Identities=13%  Similarity=0.059  Sum_probs=102.2

Q ss_pred             HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      ...+...+-.++.++++|.++||+.||++++.+-++..+..+++.+....  +. ...+.++++.++.+.+.....|...
T Consensus        49 lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~--~~-~~~~~Ll~~~fl~g~~~a~~~PA~~  125 (524)
T PF05977_consen   49 LVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF--GL-LSPWLLLILTFLLGIGSAFFNPAWQ  125 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566667788899999999999999999988877666655544311  11 2233444444555555555567788


Q ss_pred             eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      +++.|+.|++....+.++.....++..++||.+.+.+.             ...|...+|.+-++..++......
T Consensus       126 A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-------------a~~G~~~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  126 AIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-------------AFFGAAAAFLINALSFLISILALL  187 (524)
T ss_pred             HHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999988             567778888777666555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.10  E-value=1.1e-09  Score=97.00  Aligned_cols=157  Identities=15%  Similarity=0.010  Sum_probs=99.7

Q ss_pred             HHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040          107 STWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF  186 (338)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  186 (338)
                      +.++.....+.....++|.++++.|++..+            .........+...++.++.|.++||+||+.........
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~   78 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL   78 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            334444445555667788999998887765            33366666777788899999999999986543222211


Q ss_pred             HH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          187 MT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       187 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      .. +..+.+....       +....+++...+.+.+.....+...++..+.  .+.|++.+|.....+.+|.+++|.+.+
T Consensus        79 ~~~l~~~~~~~~~-------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g  149 (382)
T TIGR00902        79 ASAIFAAAFSAGA-------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG  149 (382)
T ss_pred             HHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence            11 1111111111       1233333333333333333445555555443  567899999999999999999999999


Q ss_pred             HhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040          266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN  297 (338)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      .+.             +..||+..|.+.+...
T Consensus       150 ~l~-------------~~~g~~~~f~~~~~~~  168 (382)
T TIGR00902       150 GLI-------------GMFDEQNILAILTAGL  168 (382)
T ss_pred             HHH-------------HHcChhHHHHHHHHHH
Confidence            998             5789999887766553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.09  E-value=3.3e-12  Score=115.54  Aligned_cols=148  Identities=20%  Similarity=0.183  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      .........++.++|++++|+++||+|||+.++.+.++..++.++.++...+     .....+....++.+++.++..+.
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence            4456778899999999999999999999999999988888888777766521     12445555666677777777788


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ...++.|..|++.|+...++.+....+|..++..+.......          .+..+|+..+.+.++++++..+..+++|
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~----------~~~~~Wr~~~~~~~~~~l~~~~~~~~~p  192 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY----------SDNWGWRILLIFGAIPSLLVLLLRFFLP  192 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccc
Confidence            889999999999999999998888777877777665544210          0235699988888878777766666889


Q ss_pred             cCC
Q 036040          309 EPN  311 (338)
Q Consensus       309 e~~  311 (338)
                      |+.
T Consensus       193 ESP  195 (451)
T PF00083_consen  193 ESP  195 (451)
T ss_pred             ccc
Confidence            973

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.08  E-value=1.1e-08  Score=93.29  Aligned_cols=196  Identities=17%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH-HH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV-TI  179 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-~~  179 (338)
                      +....++.+.....+|+...+.|.....+ +-++....         ..........++..+|.++.|.+..+++|- +.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~---------~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~  382 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISIT---------EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQ  382 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc---------eeehhhhhHHHHHHHHHHHHHHHHHHccchhHH
Confidence            44445566667777888888888766653 22221100         122355566667777888889999888864 44


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      ++++.+++.+++.+++...     .++... .+.+.++.+++.++......+.++-..|.+.-+++.|+..++..+|+.+
T Consensus       383 li~~~~~~ta~~Gama~~~-----~~n~~~-~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI  456 (599)
T PF06609_consen  383 LIFGSVLMTAFCGAMAAVR-----PDNKNA-AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI  456 (599)
T ss_pred             HHHHHHHHHHHHHHHHHcc-----CCCcch-HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence            4566555554444443322     111111 1222233333333333344456666789999999999999999999999


Q ss_pred             HHHHHHHhhhccccC------------------------------C-----CCCCCCCC--------------cchHHHH
Q 036040          260 GAFGFLYAAQDQDKS------------------------------K-----ADPGYPAG--------------IGIKNTL  290 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~------------------------------~-----~~~~~~~~--------------~~~~~~~  290 (338)
                      +..++..+....-..                              .     .-|+....              .+++.+|
T Consensus       457 g~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~  536 (599)
T PF06609_consen  457 GYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVY  536 (599)
T ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988876554211000                              0     00111111              3577888


Q ss_pred             HHHHHHHHHhHhheeecccCCC
Q 036040          291 FLLAAVNVLGLLFTFLVPEPNG  312 (338)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~e~~~  312 (338)
                      +....++.++++..+++++.++
T Consensus       537 ~~siaFG~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  537 YSSIAFGVVAIIAALFLGDIDK  558 (599)
T ss_pred             HHHHHHHHHHHHHHHHcCChHH
Confidence            8888888888888888877654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09848 glucuronide transporter; Provisional

Probab=99.07  E-value=1e-09  Score=99.22  Aligned_cols=113  Identities=14%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++.++.+++.||+|+|+.+.++.+++.++.+.+.+..     . ..........++.+.+.....+..++
T Consensus       269 ~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~-----~-~~~~~~~~~~~l~g~G~~~~~~~~~a  342 (448)
T PRK09848        269 VLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS-----V-WSLPVALVALAIASIGQGVTMTVMWA  342 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-----c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566777888999999999999999998877666655554321     1 11222222223333333444455667


Q ss_pred             eecccCCc-------cchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFPA-------RFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p~-------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +.+|..|.       +.+|...|+.++...+|..+++.+.+.+.+.
T Consensus       343 l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        343 LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777764       3568899999999999999999999887653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.05  E-value=8.2e-09  Score=91.77  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=62.8

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++..+.+++.||++++......  .+.+..+....... . .. .............+++.....+....
T Consensus       248 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  322 (394)
T PRK11652        248 LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLLAGLLMWIPGW-F-GV-MNVWTLLVPAALFFFGAGMLFPLATS  322 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h-cc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667777778888888888743332222  11111111111110 0 00 11122222223333333334556666


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      +..|.+| +.++++.++.+....+|+.+++.+.+.+.
T Consensus       323 ~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        323 GAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7778887 57899999999999999999999988875

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.05  E-value=4.7e-09  Score=91.39  Aligned_cols=141  Identities=15%  Similarity=0.068  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      -+...+...+..++...+..++.+|+|.|+.++++..++++=.++.++...        ...+...-.+-+.-.......
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--------~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--------PWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHHHHHHHHHHHHHH
Confidence            344566777778888889999999999999999998888777777776552        233333333333222222233


Q ss_pred             eeeeecccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-e
Q 036040          229 TFIVPAEIFPARFRSTCHGIS-AAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-L  306 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  306 (338)
                      ..-|+++.+|++..++...+. +....+|.++.+.+.|.+.             +..|++..|++.+.+.++..++.. .
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-------------d~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-------------DRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-------------hhcCcHHHHHHHHHHHHHHHHHheee
Confidence            456889999999999998885 5677889999999999998             688999899888888777666665 4


Q ss_pred             cccC
Q 036040          307 VPEP  310 (338)
Q Consensus       307 ~~e~  310 (338)
                      +++.
T Consensus       400 l~~~  403 (412)
T PF01306_consen  400 LKKD  403 (412)
T ss_dssp             S--S
T ss_pred             ecCC
Confidence            5443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.03  E-value=9.3e-10  Score=96.18  Aligned_cols=176  Identities=16%  Similarity=0.063  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHH-cc----CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-h
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VG----WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-I  174 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~  174 (338)
                      .+..++..-+..-+.||++...+..|+.. .+    +++++           ......+...+.. ...+++||++|| +
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~-----------A~~l~~~y~slVY-~t~i~GG~laDr~L   89 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH-----------ATGLFSAYGSLVY-LTPIIGGWLADRVL   89 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh-----------hHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence            44556666677778999999888887765 33    44433           1222233333333 356689999999 5


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHH
Q 036040          175 GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAA  252 (338)
Q Consensus       175 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~  252 (338)
                      |+|+.++.+.+++.++.++++....     ..... +.+...+...+.+..-+....+++|++|++  .|..+.++.++.
T Consensus        90 G~~~tI~lGail~~iGh~~L~~~~~-----~~~~g-l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~  163 (498)
T COG3104          90 GTRRTIVLGAILMAIGHLVLAISSV-----SGPGG-LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMG  163 (498)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccc-----ccccH-HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEE
Confidence            9999999999999998888876530     01122 222333333556666677778899999764  478888999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040          253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV  307 (338)
Q Consensus       253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (338)
                      .++|++++|.+.+++.             ..+||+..|...++-..++++..+..
T Consensus       164 iNiGsl~~p~i~~~~~-------------~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         164 INIGSLIAPIITGLLA-------------INYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             eehHHHHHHHHHHHHH-------------HhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999998             68899999988877777776655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.02  E-value=3.4e-08  Score=87.07  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      ..........+.+++.++...+.+|+|+|+++.++.++.+++.+++.+...      +.....++..++.+.+.....+.
T Consensus       274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~------~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA------GSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC------cchHHHHHHHHHHHHHhhccccc
Confidence            334555556666677889999999999999999998887777776665541      33444555545555566667788


Q ss_pred             eeeeecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          229 TFIVPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       229 ~~~~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .|++++|..+       .|.-|...|...++.-+|..++..+.+++..
T Consensus       348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998864       3445667788888889999999999988874

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.00  E-value=9.8e-09  Score=91.76  Aligned_cols=144  Identities=10%  Similarity=-0.095  Sum_probs=69.2

Q ss_pred             HHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM  187 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~  187 (338)
                      .......+++...+.|.++++. |+++.+            ..........+.++++.+.+.+.++.++++.......+.
T Consensus       227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  294 (413)
T PRK15403        227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQ------------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ  294 (413)
T ss_pred             HHHHHHHHHHHHHhChHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            3344445566667788888774 666544            222444455566666666666654443333332222222


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      .++..++.......  . +..........+.+.+.....+...... ..-....+|++.++.+.....+...++...+++
T Consensus       295 ~ig~~l~~~~~~~~--~-~~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        295 LVGLALLIVGNLLW--P-HVWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHHc--c-ccHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222111000  1 1111111222222222222222232111 111222479999999998888889999998888


Q ss_pred             h
Q 036040          268 A  268 (338)
Q Consensus       268 ~  268 (338)
                      .
T Consensus       371 ~  371 (413)
T PRK15403        371 W  371 (413)
T ss_pred             H
Confidence            6

>PRK11462 putative transporter; Provisional

Probab=99.00  E-value=6.6e-09  Score=94.01  Aligned_cols=113  Identities=15%  Similarity=0.035  Sum_probs=65.8

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......++.+++.+++++++||+|+|+.+..+..+.++..+++.+..     ..+.....+ ..++.+++.....+..++
T Consensus       268 ~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        268 FLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-----MQASITMFV-FIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-----hhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            44556677788889999999999999887655443333232222111     111111222 222223333333444566


Q ss_pred             eecccCC-----ccchhh--hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFP-----ARFRST--CHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p-----~~~R~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +.+|..+     +..|..  ..+...+...+|..+++.+.+.+.+.
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777655     224444  44565688899999999998888753

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.00  E-value=1.2e-08  Score=85.70  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      ..+++.....+..+++..+|.++|++|||+.+....++.++...+-+....        ...+..+....+++.++ .|.
T Consensus       115 ~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn--------f~~L~~f~~l~~~g~gg-~pv  185 (528)
T KOG0253|consen  115 APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN--------FASLCVFRALWGFGVGG-LPV  185 (528)
T ss_pred             hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC--------eehhhHHHHHHhccCCC-ccH
Confidence            334677778899999999999999999999998887766666555544432        23333344444443344 677


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ..++-.|..|...|..-+-.. ++..+|.++...+....+             .+.||++.+...+....+...+.+++|
T Consensus       186 ~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm-------------~~~gwr~~l~~~~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  186 DSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM-------------SNFGWRYLLFTSSTPLMFAARFLVWVY  251 (528)
T ss_pred             hHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence            777789999999999877666 777889999998888777             678999888777777777777777999


Q ss_pred             cCCC
Q 036040          309 EPNG  312 (338)
Q Consensus       309 e~~~  312 (338)
                      |+.+
T Consensus       252 ESpR  255 (528)
T KOG0253|consen  252 ESPR  255 (528)
T ss_pred             cCcc
Confidence            9754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.99  E-value=4.9e-09  Score=85.48  Aligned_cols=144  Identities=15%  Similarity=0.063  Sum_probs=96.6

Q ss_pred             HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV  189 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  189 (338)
                      .......|.+..|.|.+.+++|+++++.+.            +.....++..+ +++.|.+.|++|.+.++.++.+...+
T Consensus        12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen   12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             HHhcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            344557888999999999999999877322            55555666655 47789999999999999999888888


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      +...+......... ..+.+.+.+.....+...............+.|| +.||++.|+.-.+..+++.+-..+...+.
T Consensus        79 GY~~~~l~~~~~i~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   79 GYGLLWLAVSGRIP-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHHHHhCccC-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            87777655432211 1222333222222222222222333334557888 57999999999998888888777777765

>PRK09669 putative symporter YagG; Provisional

Probab=98.99  E-value=6.8e-09  Score=93.79  Aligned_cols=113  Identities=11%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ......+..+++.+++++++||+|+|+.+.++.++.+++...+.+..     . +......+..++.+.+.....+..++
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-----P-SNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-----c-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566777888999999999999999887655544333222211     1 11222333333344444455577788


Q ss_pred             eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +++|..+       .+..|...|..++...+|..+++.+.+.+.+.
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888875       33456677888889999999999999988753

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.99  E-value=7.1e-09  Score=89.66  Aligned_cols=123  Identities=12%  Similarity=-0.031  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhcc
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRV----TIQLIGFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANF  223 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                      +.++..+...++.+|.+++|.++||+-|+    .......+.++.+..+......... .........+++.+..-....
T Consensus       285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW  364 (493)
T ss_pred             chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            56678888889999999999999995331    1222222222221111111000000 011112222222222222222


Q ss_pred             CccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhhcc
Q 036040          224 GPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQ  271 (338)
Q Consensus       224 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~  271 (338)
                      ..+++..-+..|+.|++.|.+++++...+..+ |.+-+|.+.+.+.+..
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            22344445678899999999999999877766 5566666888887644

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.96  E-value=5.3e-09  Score=92.82  Aligned_cols=179  Identities=15%  Similarity=0.044  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHH-HHHHHHhccchhHHHH-HHHHHhhchHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARA-QTLVALCGLIPGYWIT-VILIDIIGRVTI  179 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~l~d~~grr~~  179 (338)
                      ...+...++.+.+.+.....+.|.++++.|.+..+           .+.. ......+..++.+++. ++..||+|||+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~-----------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~   71 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA-----------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRS   71 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchh
Confidence            34556667788888888889999999999888765           2222 1234455565566666 557888999888


Q ss_pred             HHHHHHHH-HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040          180 QLIGFFFM-TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI  258 (338)
Q Consensus       180 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~  258 (338)
                      .++...+. +.+...+....  .  ................+......+....+..|..+.+.++...+.......+|..
T Consensus        72 ~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~  147 (390)
T TIGR02718        72 WVLPMQCLVSACLASLALVG--P--DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF  147 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH
Confidence            76554332 21222222111  0  0011112222222222233333344445567777777777777777777788888


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      +++...+.+.             +..||+..|++.+++.++..+..++.+
T Consensus       148 ~g~~~~~~l~-------------~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       148 GGGAGTLVLF-------------GKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHH-------------HHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8888887877             578999999999888777666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=9e-09  Score=83.36  Aligned_cols=145  Identities=11%  Similarity=0.021  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      +.+.++.++.....+-+....|.++++ +|+|+...+.            +.+.......+.+++.|.++||+|++...+
T Consensus       267 w~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~------------i~s~vy~Isav~spvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN------------ILSTVYGISAVLSPVFGAISDKYGFNLWWV  334 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc------------hhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence            334444445555555556666766655 7988876332            555556666778889999999999998877


Q ss_pred             HHHHHHHHHH-HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFM-LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .+..+..+.. ..+.+..  +    +++..+..+.+.......    ..|.+++-+.|.+.-|++.|+++.+.++|-.+.
T Consensus       335 ~~a~~~tl~~H~~l~Ft~--l----sPy~~m~~lGLsysllAc----slWP~va~~vpE~qLGTaygf~qsIqNLgla~i  404 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF--L----SPYTSMTFLGLSYSLLAC----SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI  404 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh--c----cHHHHHHHHhhhHHHHHH----HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence            6643332221 1222221  1    223323222222222222    246667888999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 036040          261 AFGFLYAAQ  269 (338)
Q Consensus       261 ~~~~~~~~~  269 (338)
                      |.+.+.+.+
T Consensus       405 ~Iiag~i~d  413 (459)
T KOG4686|consen  405 PIIAGFIAD  413 (459)
T ss_pred             hhhhheeec
Confidence            999999985

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=4.4e-09  Score=95.31  Aligned_cols=174  Identities=13%  Similarity=0.074  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      .+..++.........+.+..+.+.+.++++.+..+            ..++..+......+.+++.+.+.||+|.|.+.+
T Consensus        48 ~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i  115 (509)
T KOG2504|consen   48 VFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI  115 (509)
T ss_pred             eHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence            34444444444455555667778888887766654            334555555566667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .|.+++.+++++..+...       .+.+.+...+..+.+....+.....+++. +.++.|+.+.|+......+|.++-|
T Consensus       116 ~G~~v~~~g~~lssF~~~-------i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~  187 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFATS-------LWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTGVGTVVFP  187 (509)
T ss_pred             HHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCCcceeeHH
Confidence            999999999999888773       23344444444444333333333344554 4567899999999999999999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP  308 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  308 (338)
                      .+...+.             +.+||+..+++++.+.+-+++... +-|
T Consensus       188 ~l~~~l~-------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  188 PLLKYLL-------------SKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHH-------------HHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9988888             689999999999988877766666 444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.93  E-value=7.7e-09  Score=93.24  Aligned_cols=176  Identities=15%  Similarity=0.055  Sum_probs=105.8

Q ss_pred             hhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchHH-HHHHHHHHHHH
Q 036040          116 YFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRVT-IQLIGFFFMTV  189 (338)
Q Consensus       116 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~  189 (338)
                      +.....+++.++. .+|+++..            .+....+..+...+..++.|+++||    +|||+ .++.+....++
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~------------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i   82 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAF------------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI   82 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence            3334445555555 46777654            4457777788888899999999998    67744 56666666666


Q ss_pred             HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      +.+++.......  ............++...+.........++..|+. +++.|++..++.+....+|+.+++.+.+.+.
T Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792        83 VLVLLFTTPDFS--ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             HHHHHHhCCCCC--cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555554432110  0011122222222222222222233456678876 5688999999988888888888777665554


Q ss_pred             hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      ....+      ..+..+|+..+.+.+++.++..+..+ ..+|++
T Consensus       161 ~~~~~------~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       161 SYFGG------GDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHhCC------CcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            32110      01356899998888888777766554 667754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.1e-08  Score=84.46  Aligned_cols=194  Identities=11%  Similarity=0.022  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      .+.....++...+.........|.+.+.++.+..+            +.........+.+++++..+++.+|+|+|+-++
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~   82 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV   82 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence            34455555666667777788889988887777655            555777888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      .++.++++++.++.-+...     ..+..++...+..+.+..........+++.+.|++..+.-+.+...++.+|++++|
T Consensus        83 lgL~l~avg~~lF~pAa~~-----~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp  157 (422)
T COG0738          83 LGLLLYAVGAALFWPAASS-----KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGP  157 (422)
T ss_pred             HHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHH
Confidence            9999999988887643321     12333333333333333444566677889999998888889999999999999999


Q ss_pred             HHHHHhhhccccCCCC-CC-----CCCCcchHHHHHHHHHHHHHhHhhee--ecccCCC
Q 036040          262 FGFLYAAQDQDKSKAD-PG-----YPAGIGIKNTLFLLAAVNVLGLLFTF--LVPEPNG  312 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~  312 (338)
                      .+...+...-.....+ +.     ......++.++...+...++..+...  ..|+.+.
T Consensus       158 ~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~  216 (422)
T COG0738         158 LLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV  216 (422)
T ss_pred             HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence            9999887410000000 00     00012366777777766665555544  4455443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=1.3e-07  Score=80.63  Aligned_cols=158  Identities=15%  Similarity=0.026  Sum_probs=104.4

Q ss_pred             HHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040          108 TWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF  186 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  186 (338)
                      ..|+....--....|++.++.+ .|.+..+            +....+....+.++|.+++.++..|+...+.+....++
T Consensus       244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~  311 (422)
T COG0738         244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI  311 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCccHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            3344434444556778888887 4444433            55577888888899999999999999999988887666


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY  266 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  266 (338)
                      ..+.++..++...         ...+......+.+....+|..++...+..|.+. . ..|.......+|+.+.|.+.++
T Consensus       312 ~ill~~~~~l~~g---------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-s-~~s~~l~maivGGAiiP~l~G~  380 (422)
T COG0738         312 AILLLLAVALIGG---------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-S-VGSGLLVMAIVGGAIIPPLQGV  380 (422)
T ss_pred             HHHHHHHHHHhcC---------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-c-ccceeeeeheecchHHHHHHHH
Confidence            5555555555441         222333334444555667888888888888333 2 3333444556799999999999


Q ss_pred             hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040          267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL  301 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (338)
                      +.             +..|....+.+...+|.+..
T Consensus       381 i~-------------d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         381 IA-------------DMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HH-------------HhhhhHHHHHHHHHHHHHHH
Confidence            98             56676666665555555554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.73  E-value=9.7e-08  Score=84.50  Aligned_cols=200  Identities=12%  Similarity=-0.015  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-
Q 036040           98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR-  176 (338)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-  176 (338)
                      .||.++...+..+.....+.....-.-.|+++++.+.+.          ..-++......++..+++++.|+...|.+. 
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~----------~ffG~viaa~slg~~i~~liF~~Ws~k~~~~  101 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATA----------TFFGLVIAASSLGHAIFSLIFGIWSNKTGSV  101 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCc----------chhhHHHHHHHHHHHhcchhhcccccccCCc
Confidence            344555555555555444433333333455553332222          123446666888999999999999999985 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      |+.++.+.+++.++.++.....+.   .++...++++..++.+. +.+.....-.|++...-.+.|.++++.......+|
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~---~~~~~y~mL~~R~l~Gv-g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg  177 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYV---PNGVKYLMLVARILTGV-GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLG  177 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHcCc-CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence            667778888888888877433311   11233444444444443 44555677788888777888888888888777788


Q ss_pred             HHHHHHHHHHhhhccccC-CCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          257 AIIGAFGFLYAAQDQDKS-KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .++||.+...+....+++ ...++ ..-.-+..+-++.++..++.+++.+ +.+|...
T Consensus       178 ~ilGp~~q~~f~~Lg~~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  178 IILGPTIQLAFTPLGEKGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHhHHHHHHHhhhcCCceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            888888777665332211 11111 1112244556667777777777666 6666443

>PRK09669 putative symporter YagG; Provisional

Probab=98.72  E-value=7.8e-08  Score=86.92  Aligned_cols=177  Identities=16%  Similarity=0.095  Sum_probs=102.2

Q ss_pred             hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchH-HHHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRV-TIQLIGFFF  186 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr-~~~~~~~~~  186 (338)
                      +..+.....|++.++.+ +|+++..            .+....+.-+...+..++.|+++||    +||| +.++++.+.
T Consensus        22 ~~~~~~~~~~l~~~~t~~~gls~~~------------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~   89 (444)
T PRK09669         22 NLVWQTVMLFLAYFYTDVFGLSAAI------------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP   89 (444)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence            33344445555655555 6777654            4446666777777888999999998    6774 555566555


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHH-HHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVM-YALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      .+++..++..... . .......+..+ ..+...+.. .......++.+|+. +++.|++..++......+|+.+++.+.
T Consensus        90 ~~i~~~l~f~~p~-~-~~~~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669         90 FGVVCLLTFYTPD-F-GATGKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHhCCC-C-CcchHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555543332221 1 11111222222 222222222 23333456788887 557899888888888888888887765


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      ..+......      .....+|+..+.+.++++++..+..+ ..+|.
T Consensus       167 ~pl~~~~~~------~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        167 LPLVDILGK------GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHhCC------CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            544432110      01245788888777777766655544 44553

>TIGR00889 2A0110 nucleoside transporter

Probab=98.63  E-value=5.8e-07  Score=80.52  Aligned_cols=65  Identities=9%  Similarity=-0.081  Sum_probs=45.3

Q ss_pred             hhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 036040          119 QNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR-VTIQLIGFFFMTVFMLALA  195 (338)
Q Consensus       119 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~  195 (338)
                      ...+++.++. +.|++..+            .++......++.+++.+++|.++||+|| |+++.++.+..++...+..
T Consensus        21 ~~~~l~~~l~~~~g~s~~~------------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAE------------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            3344555554 46777765            4457788889999999999999999965 7677766665555544444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.63  E-value=8.4e-07  Score=83.31  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHH-hccchhHHHHHHHHHhhc--hH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVAL-CGLIPGYWITVILIDIIG--RV  177 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g--rr  177 (338)
                      ++...+..++....++++..|+|.++++ +|+++.+            +........ .+.++|.+++|+++||++  .|
T Consensus       332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~  399 (633)
T TIGR00805       332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVK  399 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------------HHHHhhhhhhhHHHHHHhhhhheeeeecccHH
Confidence            3445555566677788889999999986 6777655            222333333 355788999999999988  45


Q ss_pred             HHHHHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLA  193 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~  193 (338)
                      +.+.++.+...+..++
T Consensus       400 ~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       400 KAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666665555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.62  E-value=1.1e-06  Score=78.75  Aligned_cols=137  Identities=23%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             HHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040          156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE  235 (338)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  235 (338)
                      ..+..++.++..|.++||+|||..+....+.+.+...+..+..         ++.++  .....+......+...+++++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~--~~~l~g~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFL--LLGLSGGFSAIFSVGFAYVAD  139 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh--hcccccchhhhhhhhhhheee
Confidence            3566677888899999999999999998877777666665543         22222  222222233445667789999


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCC
Q 036040          236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRS  314 (338)
Q Consensus       236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~  314 (338)
                      ....+.|....|+.+.....+..++|.+.+.+.             ...|....|.+.++..++..++.. ++||+...+
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~-------------~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV-------------KFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------HhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            999999999999999999999999999999998             678899999999999999988887 899976544


Q ss_pred             hh
Q 036040          315 LE  316 (338)
Q Consensus       315 ~~  316 (338)
                      .+
T Consensus       207 ~~  208 (463)
T KOG2816|consen  207 ER  208 (463)
T ss_pred             cc
Confidence            33

>TIGR00788 fbt folate/biopterin transporter

Probab=98.61  E-value=2.3e-07  Score=84.20  Aligned_cols=174  Identities=11%  Similarity=-0.029  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-----h
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-----R  176 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r  176 (338)
                      ......++..+.. +......+.+++ ++|.++.+.            ........+...+ .+++|.++||++     |
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i------------~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rR   94 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARY------------QRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTK   94 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHH------------HHHHHHHHHHHHH-HHHHHHHHHhcCCCCccc
Confidence            3444456677776 444445555555 578888661            1233444444444 445999999997     6


Q ss_pred             HHHHHHHHHHHH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhh---HHHHHHH
Q 036040          177 VTIQLIGFFFMT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTC---HGISAAA  252 (338)
Q Consensus       177 r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~---~~~~~~~  252 (338)
                      |+.++++.++.+ ++...++..       .+......+..++..++........-.+..|..+ +.++.+   .++....
T Consensus        95 r~~l~~~~~l~~~~~~~~l~~~-------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~  166 (468)
T TIGR00788        95 RWYLVLSGLLGSAILYGLLPGK-------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA  166 (468)
T ss_pred             hHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence            777776655542 222211111       1112222222333333333344566678889888 444433   3344444


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      ..+|..+++.+.+.+.             +..+|+..|++.+++.++..+...+++|.+
T Consensus       167 ~~~G~~vg~~l~G~l~-------------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       167 SATGGLISSLLGGPLL-------------DKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHHHHHHHHHHHHHH-------------HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            4589999999999987             577899999988888777755445778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.57  E-value=1.6e-07  Score=84.48  Aligned_cols=175  Identities=19%  Similarity=0.102  Sum_probs=107.2

Q ss_pred             hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhchHHHHH-HHHHHHH
Q 036040          115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGRVTIQL-IGFFFMT  188 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~  188 (338)
                      .+.....+.+.++.+ +|.++..            .+....+.-+...+..++.|.++|    |+|||+..+ ++.+..+
T Consensus        16 ~~~~~~~~~~~f~~~~~gl~~~~------------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~   83 (428)
T PF13347_consen   16 IWSLLSSYLLYFYTDVLGLSPAL------------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA   83 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence            333344454554444 4776643            333555666677777889999999    789766544 5666666


Q ss_pred             HHHHHHHhh-hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040          189 VFMLALAIP-YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGFLY  266 (338)
Q Consensus       189 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~  266 (338)
                      ++..++... ...........+..+...++ ............++.+|+.+ ++.|.+..+.-..+..+|..+...+.+.
T Consensus        84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen   84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             HHHHHhhccccchhhhhhHHHHHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            665555533 21110011111222222223 33333334445678899987 5689999999999999988877777777


Q ss_pred             hhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          267 AAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                      +.+..+..       +. .+|+....+.+++.+++.+..+ ..+|
T Consensus       163 l~~~~g~~-------~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  163 LVSWFGGG-------DTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhhhccC-------ccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            66433221       22 2788888888888888777776 7788

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.56  E-value=1.6e-06  Score=79.12  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             HHHhccchhHHHHHHHHHhhchHH-------HHHHHHHHHHHHHHHHHhhhh-hc-ccccchhhHHHHHHHHHHhhccCc
Q 036040          155 VALCGLIPGYWITVILIDIIGRVT-------IQLIGFFFMTVFMLALAIPYH-HW-IQKHNSTGFVVMYALTFFFANFGP  225 (338)
Q Consensus       155 ~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                      +..+..++.+++.+++.||+++|+       .+.+|.++++++++.++.... .. .+...+.++.+...++.+.+....
T Consensus       317 ~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~  396 (489)
T PRK10207        317 LNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI  396 (489)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            333445567777899999999886       366677776666554432111 11 111223333444444444444455


Q ss_pred             cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      .+....++.+..|++.++.++|+.+....+|+.++..+....
T Consensus       397 ~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        397 SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566677888899999999999999999999999988877655

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.55  E-value=4.7e-07  Score=82.49  Aligned_cols=181  Identities=15%  Similarity=0.029  Sum_probs=100.3

Q ss_pred             HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhch-HHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGR-VTIQLIG  183 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-r~~~~~~  183 (338)
                      +..+..+.....|++.|+.+ +|.++..            .+.+..+.-+...+..++.|+++|    |+|| |+.++++
T Consensus        16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~------------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g   83 (473)
T PRK10429         16 FGKDFAIGIVYMYLMYYYTDVVGLSVGL------------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG   83 (473)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh
Confidence            33444555556666777666 4776644            344566677777788899999999    5698 5566666


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAF  262 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~  262 (338)
                      .+.++++..++..... . .......+..+..++...+.........++..|+. +++.|.+..++-..+..+|+.+.+.
T Consensus        84 ~i~~~i~~~llf~~p~-~-~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429         84 TLANSVVLFLLFSAHL-F-EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             hHHHHHHHHHHHcCCC-C-CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555444422210 0 00111112222222222222222334456779988 5889999888877777777666655


Q ss_pred             HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      +...+....+.      ..+..+|.....+.+++.+++.+..+ ..+|.
T Consensus       162 ~~~~~~~~~g~------~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        162 FTLPFVNYVGG------GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHhCC------CchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            54433221110      01233566666666666665555544 45664

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.53  E-value=2.2e-06  Score=80.14  Aligned_cols=173  Identities=14%  Similarity=0.035  Sum_probs=106.6

Q ss_pred             hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHHHHHHHHHHHHHHHH
Q 036040          115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVTIQLIGFFFMTVFML  192 (338)
Q Consensus       115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~  192 (338)
                      .||++...+..++.+ +|++...           .+.......++. -+..+++|+++|+ +||++.+.++.++..++..
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~-----------A~~i~~~f~~l~-yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~   69 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSEST-----------STVLFHTFTYLC-YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHA   69 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            356666665555544 4555433           122223333333 3456678999996 7999999999888888877


Q ss_pred             HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR---FRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      ++++..................+.+..++.++.-+...+...|.++++   .|.....+.++..++|+++++.+.+++..
T Consensus        70 llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~  149 (654)
T TIGR00926        70 LLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG  149 (654)
T ss_pred             HHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776543110000011122223333444455566677778888888753   47788889999999999999999998863


Q ss_pred             ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ...      .+....+|..+|.+.+++.+++++...
T Consensus       150 ~~~------~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       150 DVG------CFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             hhc------ccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            110      000234688888888877777766543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.51  E-value=1.1e-05  Score=73.49  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccc-ccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQ-KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      .+|.++.+++...+++....... ...+.++.+...++...+-....|....+..+..|++.||+.+|+......+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777766666543211111 11234444445555555556667788889999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT  304 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (338)
                      ++.+.....             ...++...|...++.+++..+..
T Consensus       433 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       433 GGYLATFGA-------------VPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHh-------------cccchhhHHHHHHHHHHHHHHHH
Confidence            988887765             34466666666665555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.51  E-value=1.3e-06  Score=75.67  Aligned_cols=183  Identities=15%  Similarity=0.057  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-HHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-IQL  181 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~  181 (338)
                      ++..+.+......+|+....+...+.--|+....            ++.......+++++++.+.|.+.||.+.-+ +.+
T Consensus       269 ~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~  336 (480)
T KOG2563|consen  269 IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTL  336 (480)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhccccccCCccc------------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            4445555555556666665554333333554433            445777788888899999999999987543 333


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      +......++.+.+.....   .. .....+.......+++..+..|+-.-+-.|..=+..-++..|+.+..+++-+++-.
T Consensus       337 v~~~~~~v~~~~l~~~t~---~~-~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~  412 (480)
T KOG2563|consen  337 VLYLFALVGTLMLLTCTL---FL-GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILV  412 (480)
T ss_pred             HHHHHHHHHHHHHHHhhc---cC-CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHH
Confidence            333333333222211111   11 22333444445556666777888888888876555557888999998888888888


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhheeecccCC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      ++.+...+...          ..+ +...-+..+..++++.++..+.++..
T Consensus       413 ~~~~~~~~~~~----------~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  413 FIMGILAEDLG----------PPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             HHHHHHhhccC----------CCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            88777763111          012 23333344555555555555554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.47  E-value=6.5e-07  Score=79.08  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040          118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP  197 (338)
Q Consensus       118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  197 (338)
                      .+..|+--.+++.|-.+.-.+            ...+....+-++..++.+++..|+|+-+++..++.+..+=.+.++..
T Consensus       389 lv~tFLfWHled~~~~~~LfG------------v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L  456 (618)
T KOG3762|consen  389 LVFTFLFWHLEDLGGIKTLFG------------VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL  456 (618)
T ss_pred             HHHHHHHHHHhhcCCcceeee------------ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence            334445555677664444322            26677778888888999999999999999988877666666666655


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHhhhccccCCC
Q 036040          198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAG-KAGAIIGAFGFLYAAQDQDKSKA  276 (338)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~  276 (338)
                      ..        ++.++-+-++.+......+..+-+|++...|++.|+++.++..... .+|-.+|+++.+.+.        
T Consensus       457 ~n--------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v--------  520 (618)
T KOG3762|consen  457 QN--------PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV--------  520 (618)
T ss_pred             cC--------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh--------
Confidence            42        2333333344444444445556688999999999999999987644 458888899988887        


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          277 DPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                           ..+|-+..|.++++.+++.+++..
T Consensus       521 -----~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  521 -----ERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             -----eeehhHHHHHHHHHHHHHHHHHHH
Confidence                 678888899988888877766554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.47  E-value=2.7e-06  Score=73.75  Aligned_cols=122  Identities=12%  Similarity=0.012  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040          148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS  227 (338)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      .+.+...++.+..++..+.+.|+.||+|-|....++....+++..+=........++............+..........
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~  159 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG  159 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc
Confidence            35567888888888999999999999999999999988888877766555432211111111222222222222222222


Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .+.-+..-+||+++|+++..+..+.+.+|..++.++.+.+..
T Consensus       160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            233345668999999999999999999999999999998874

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.44  E-value=2.9e-07  Score=80.43  Aligned_cols=168  Identities=12%  Similarity=0.016  Sum_probs=88.1

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      ....+...+.+-....+.|.++++ .|++.++            .+.......+..++..++.|.++||+|.|+-+++..
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            333444444455566777888876 7888866            445677778888889999999999999666554443


Q ss_pred             HHHHHHHHHH-HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc---cchhhhHHHHHHHHHHHHHHH
Q 036040          185 FFMTVFMLAL-AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA---RFRSTCHGISAAAGKAGAIIG  260 (338)
Q Consensus       185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~R~~~~~~~~~~~~~g~~~~  260 (338)
                      .+..+..... .+...+.... +   ..+...+.....+....+...  +.|.+-.   +..+.-+|=.-+.+.+|-+++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~-n---~~lg~iig~i~l~~~f~~~~~--~~Ea~~er~sr~~~feYG~~R~wGSig~ai~  154 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQS-N---FWLGAIIGGIYLGLVFNAGVP--LSEAYAERVSRRNGFEYGRARMWGSIGFAIA  154 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHT-T----HHHHHHTTTTTTTTTTTHHH--HHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcccch--HHHHHHHHHHHHhcCCcchHHHHhhHHHHHH
Confidence            2222111111 1111000000 1   111111111111222222111  2343322   233445666778889999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      +.+.|.+.              ..+....|++..+.+++..++.+
T Consensus       155 s~~~G~L~--------------~i~p~~~fwi~s~~~~il~lll~  185 (412)
T PF01306_consen  155 SLLAGILF--------------NINPNIIFWIASAAAIILLLLLL  185 (412)
T ss_dssp             HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhheee--------------eeCccHHHHHHHHHHHHHHHHHH
Confidence            99999887              24556777766665555544444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PTZ00207 hypothetical protein; Provisional

Probab=98.44  E-value=1.2e-05  Score=74.01  Aligned_cols=191  Identities=16%  Similarity=0.032  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH---
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV---  177 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---  177 (338)
                      +++++...++....-......+..+.+++ |..++..          .+..+.++.++++.+|.+..|++....-+|   
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~----------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA----------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc----------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            56666666666656666677788888888 6633220          011146667778888888888877322222   


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHH
Q 036040          178 -----TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA  252 (338)
Q Consensus       178 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~  252 (338)
                           ++.+....++.+..+++.+..       + ...+.+..++.+++.+..+++....++|+|. +.-|+-+-+....
T Consensus       425 ~r~prt~~l~~~~~~~~~~lll~~~~-------p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a  495 (591)
T PTZ00207        425 DRVPITIALFIPSVCIITMLTLFLTL-------P-KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLG  495 (591)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHC-------C-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHH
Confidence                 222222222333333333332       1 1233333344444444555667788999999 6667666666665


Q ss_pred             HHHHHHHH-HHHHHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          253 GKAGAIIG-AFGFLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       253 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .-+|+.+- ..+.+.++|.... +.+....... =++.+|++.+++++++++... ..-++++
T Consensus       496 ~pigs~~~n~~l~G~~Yd~ea~-k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~  557 (591)
T PTZ00207        496 SVLSAIFLNRLLYGEWYTQQAD-KLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR  557 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence            55665554 4556666653321 1111000111 157889999999988888766 3335543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=2.3e-05  Score=72.78  Aligned_cols=80  Identities=5%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RV  177 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr  177 (338)
                      ..+...+...+....+.++.+|+|.|++. +|.++..           ...+...+..-+..+|.+++|+++.|+.  -|
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~-----------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r  461 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASL-----------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR  461 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH-----------HHHHhhhhhhhhhhhhhhccceeeeeecccHH
Confidence            34566667777888899999999999987 5666654           2233444455556678889999999874  44


Q ss_pred             HHHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFM  191 (338)
Q Consensus       178 ~~~~~~~~~~~~~~  191 (338)
                      ....+.++...+..
T Consensus       462 ~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  462 GAAKFVIVCSVLSL  475 (735)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444443333333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.38  E-value=3.4e-06  Score=74.69  Aligned_cols=173  Identities=15%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-hHHHHHHHHHH
Q 036040          108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-RVTIQLIGFFF  186 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~  186 (338)
                      .++.+...+.....+.+.++++.|++..+            .+...+...+..+++.+++|.++||.+ +|+.+.+..++
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~   77 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQ------------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLL   77 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence            33444444555567789999999988876            344677788888999999999999986 45666555555


Q ss_pred             HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY  266 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~  266 (338)
                      .++.+.......       +... ++...+..........|...++..+...  .++.-+|-.-..+.+|-+++......
T Consensus        78 ~~~~~~~~~~~~-------~f~~-~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~  147 (400)
T PF03825_consen   78 SALALLLLAFSS-------SFWW-LFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGG  147 (400)
T ss_pred             HHHHHHHHHHhc-------cHHH-HHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHH
Confidence            555443333322       1122 2222222222223333444444444333  23334455555555655555443222


Q ss_pred             hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040          267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN  311 (338)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  311 (338)
                      .....         .+..+....+++.++..++.....+.+|+++
T Consensus       148 ~~~~~---------~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  148 LLGGY---------LGISGTSLIFYIAAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHhh---------hccccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            11100         0111223345555555544444445667654

>PRK11462 putative transporter; Provisional

Probab=98.38  E-value=4.2e-06  Score=75.90  Aligned_cols=177  Identities=14%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchHH-HHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRVT-IQLIGFFF  186 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~  186 (338)
                      +..+.....|+..++.+ .|+++..            .+.+..+.-+...+.-++.|+++||    +|||+ .++++.+.
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~------------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~   89 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGF------------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP   89 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHH------------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence            33344444555555555 5766643            4446666667777888899999996    57754 55556556


Q ss_pred             HHHHHHHHHhhhhhcccccchh-hHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          187 MTVFMLALAIPYHHWIQKHNST-GFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      .+++..++..... . ...... +..+...+...+.. .......++.+|+.+ ++.|++..++-..++.+|..+++.+.
T Consensus        90 ~~i~~~llf~~p~-~-s~~~~~~y~~~~~~~~~~~~t-~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462         90 FGIVCVLAYSTPD-L-SMNGKMIYAAITYTLLTLLYT-VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHhCCC-C-CcchHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555544432221 1 111112 22222222222222 222334567788876 78999999999999999888887776


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      ..+.......      .+..+|.....+++++.+++....+ ..+|.
T Consensus       167 ~plv~~~g~~------~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        167 MPLVNLIGGD------NKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHhCCC------chhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            5544322100      1234677777777777666655544 45554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.37  E-value=1.3e-05  Score=68.15  Aligned_cols=161  Identities=13%  Similarity=0.011  Sum_probs=92.7

Q ss_pred             ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040          121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH  200 (338)
Q Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  200 (338)
                      .|.-.+.++.|++..+            -....+...+...+...+.|.++||+|||+..+..+++.+++++.-...   
T Consensus        55 pY~Y~LY~~yg~~~~q------------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~---  119 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQ------------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS---  119 (354)
T ss_pred             chhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc---
Confidence            3333444666777655            2335566677777788889999999999999888877777776543322   


Q ss_pred             cccccchhhHHHHHHHHHHhhccCccceeee-eeccc----CCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhhccccC
Q 036040          201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFI-VPAEI----FPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQDQDKS  274 (338)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~----~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~  274 (338)
                            ....+++..++.+.......+..-+ ++.|.    +|++..+...+...+. +.+.++.+..+.-.+.+.    
T Consensus       120 ------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~----  189 (354)
T PF05631_consen  120 ------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW----  189 (354)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH----
Confidence                  2444555555555444333322211 23332    4555555555544422 333445555555555421    


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040          275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR  313 (338)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~  313 (338)
                             ...|...+|....++.+++.+++. .-+|..+.
T Consensus       190 -------~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  190 -------FGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             -------hCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence                   233456778777777777777666 55676554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.35  E-value=1.4e-05  Score=73.36  Aligned_cols=135  Identities=10%  Similarity=0.011  Sum_probs=78.1

Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc-chhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040          166 ITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH-NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST  244 (338)
Q Consensus       166 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  244 (338)
                      +.+++.+|.+.+..+.++.++++++.+.+.....+....+ .+..+.+...++.+.+.....|....++.+..|++.||+
T Consensus       339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~  418 (500)
T PRK09584        339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGF  418 (500)
T ss_pred             HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence            3455555555667788888888888777766543211111 122244444455555555666777788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          245 CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                      ++|+......+|+.++..+......  +.. ..+......++...|...++.+++..++
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~--~~~-~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAV--PDN-VTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc--ccc-cccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9998876666666666555542210  000 0000001123667777777665544433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.34  E-value=1.2e-05  Score=68.00  Aligned_cols=158  Identities=18%  Similarity=0.055  Sum_probs=114.2

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      ...-++...++.+-++.|.+.+.            ++..+.+..++..+.+++..++..|+|.++.+..++++.+++.++
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~------------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i   93 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSV------------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI   93 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45556667777777777777654            566888888888888999999999999999998887777666655


Q ss_pred             HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040          194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  273 (338)
                      =....         ...++......+.+....+......+-+-||++. +..+|++.+.-.+++.+++.+...+..    
T Consensus        94 R~~~~---------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~----  159 (395)
T COG2807          94 RSLGG---------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ----  159 (395)
T ss_pred             Hhccc---------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHH----
Confidence            44332         2223332233332222223445567788898776 889999999999999999998888873    


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                              ...||+.+..+.+.+++++++..+
T Consensus       160 --------~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         160 --------HSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             --------hhccHHHHHHHHHHHHHHHHHHHh
Confidence                    335799999988988888877654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.20  E-value=1.6e-05  Score=67.57  Aligned_cols=44  Identities=18%  Similarity=0.074  Sum_probs=38.4

Q ss_pred             cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .+....++....|.+.||+..|+....+.++-++||.+.+.+..
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            34455677888999999999999999999999999999988764

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=1.6e-05  Score=67.98  Aligned_cols=136  Identities=13%  Similarity=-0.079  Sum_probs=79.4

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQL--IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      ......+...+++.+.|.+.||++..+.+.  .+.+..++++..+.++..+.    ..+......++..........|..
T Consensus       311 ~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~----~L~vp~~~l~~~i~~~dasl~P~l  386 (464)
T KOG3764|consen  311 AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA----QLWVPNFGLGFGIGLADASLIPTL  386 (464)
T ss_pred             eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH----HHhhhhHHHHHHHHHHHHHHhhhh
Confidence            455667778889999999999999433332  23222222222222222110    001111111222222222222322


Q ss_pred             eeeecccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          230 FIVPAEIFPAR---FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       230 ~~~~~e~~p~~---~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                       .++.+.-..+   .-|...++......+|..+||.+.+.+.             ...|+++...+.++..++......
T Consensus       387 -~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv-------------~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  387 -GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV-------------EAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             -HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe-------------eehhHHHHHHHHHHHHHHHHHHHH
Confidence             2333333333   5678889999999999999999999997             788999988888888777655544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.12  E-value=3.1e-05  Score=68.70  Aligned_cols=180  Identities=20%  Similarity=0.120  Sum_probs=110.2

Q ss_pred             HhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchH-HHHHHHHH
Q 036040          112 LDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRV-TIQLIGFF  185 (338)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr-~~~~~~~~  185 (338)
                      .+..+.....|+..+..+ .|+++..            ++.+..+.=+...+.-++.|.++||    +||+ +.++++.+
T Consensus        24 ~~~~~~~~~~yLl~fYTdv~Gis~~~------------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          24 SNFAFGIVVLYLLFFYTDVFGLSAAL------------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcHHH------------HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            333444455556665555 4666643            4445666666677788899999996    5654 55555645


Q ss_pred             HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      ..++...++-.... ...........+...+...+.+.. .....++.+|+.+ ++.|.+..+.-..+..+|+.+...+.
T Consensus        92 p~~i~~~l~F~~p~-~~~~~k~~ya~vtY~l~~l~YT~v-niPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~  169 (467)
T COG2211          92 PFAIVAVLLFITPD-FSMTGKLIYALVTYMLLGLGYTLV-NIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF  169 (467)
T ss_pred             HHHHHHHHHHcCCC-cccCcchHHHHHHHHHHHHHHHhe-eCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554444433331 111112223333333333333333 2334467777764 57899999999999999999999888


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN  311 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  311 (338)
                      +.+....+++      ....||+....+++++.++..++++ -.+|..
T Consensus       170 ~plv~~~g~~------~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         170 PPLVKLFGGG------DKALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHhCCC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8877654432      1267888888888888887777777 555543

>PRK09848 glucuronide transporter; Provisional

Probab=98.08  E-value=3.5e-05  Score=69.84  Aligned_cols=67  Identities=19%  Similarity=0.162  Sum_probs=42.5

Q ss_pred             hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh----chHHHH-HHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII----GRVTIQ-LIGFFF  186 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~  186 (338)
                      +..+.....|++.|+++ .|+++.+            .+....+..+...+..++.|+++||.    |||+.. .++.+.
T Consensus        21 ~~~~~~~~~~l~~y~~~~~gl~~~~------------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848         21 NFAFAMGALFLLSYYTDVAGVGAAA------------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            33343444455556665 4776644            45577777888888999999999996    666644 455444


Q ss_pred             HHHHH
Q 036040          187 MTVFM  191 (338)
Q Consensus       187 ~~~~~  191 (338)
                      ..+..
T Consensus        89 ~~~~~   93 (448)
T PRK09848         89 LMIFS   93 (448)
T ss_pred             HHHHH
Confidence            44333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.02  E-value=2.4e-05  Score=51.42  Aligned_cols=66  Identities=12%  Similarity=0.071  Sum_probs=51.9

Q ss_pred             HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      .++...........|.|.++++.|+++.+            .+.+..+..+..+++.+++|.++||+++++..+....
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQ------------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            34444455666778899999999999876            4457777888889999999999999999888776543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.94  E-value=0.00025  Score=53.62  Aligned_cols=142  Identities=10%  Similarity=0.065  Sum_probs=88.1

Q ss_pred             HhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040          112 LDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM  191 (338)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  191 (338)
                      ....+.........++++.+-.... +.+.     ..+.....+......+++++.+.+.+++|.|+.++++.+...+..
T Consensus         8 ~Ftaf~t~~~i~~svi~s~~~~~~~-~i~~-----~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~   81 (156)
T PF05978_consen    8 LFTAFQTQSFIQESVIHSVHERNPS-SISA-----GLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI   81 (156)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhcCcc-cccc-----cccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3344555555555666554332211 0000     113334455555566677888999999999999999866555443


Q ss_pred             HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      .......         ...++....+.+++....+...-.++.+...++.|++-.++...+...+.++|..+...+.
T Consensus        82 ~~~~~~~---------~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   82 ASFFYPN---------SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHhhh---------HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332221         3334444444454444455555567888888999999999999998988888887776664

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.88  E-value=0.00043  Score=62.80  Aligned_cols=151  Identities=12%  Similarity=0.003  Sum_probs=91.4

Q ss_pred             HHHHHHHhccchhHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIG-FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      ....+..+...+..++.|-++|+-|+||.++.. ..++.++..++.+..     ++......++..+...+.. ......
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-----~~~~~~~~~l~iia~v~~~-~~~vfy  147 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-----PGQWWLALVLFIIANVGYE-ASNVFY  147 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHH-HHHHHH
Confidence            345556666667788889999998876655544 344444444444432     1122222222222222222 223445


Q ss_pred             eeeecccCCccch--------------------------hhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 036040          230 FIVPAEIFPARFR--------------------------STCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG  283 (338)
Q Consensus       230 ~~~~~e~~p~~~R--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (338)
                      .+++.|+.+++.+                          ++..+.....+++|+++.-.+...+....+..     ..+.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-----~~~~  222 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-----ASNT  222 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-----cccc
Confidence            6788999988888                          89999999999999988777766554322110     1123


Q ss_pred             cchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          284 IGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      ...+.++.+.++..++..+-.+ ++||.++
T Consensus       223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4567888777777666655555 7887654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.88  E-value=2.7e-06  Score=78.02  Aligned_cols=157  Identities=11%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RVT  178 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~  178 (338)
                      .+...+..........++..|.|.|++. ++.++.+.+           .....+...+..+|.+++|++..|+.  .|.
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~-----------~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~  375 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQAS-----------LLTGIVSIPGAALGILLGGYIVKKFKLSARG  375 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----------HHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence            3455555666677788899999999987 676665522           22334445566778889999999875  344


Q ss_pred             HHHHHHHHHHHHHHHHHhhh--------------hhc-----cc------c-------------------c--chhhHHH
Q 036040          179 IQLIGFFFMTVFMLALAIPY--------------HHW-----IQ------K-------------------H--NSTGFVV  212 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~--------------~~~-----~~------~-------------------~--~~~~~~~  212 (338)
                      ......+...+..++.....              .+.     ..      .                   +  .....+.
T Consensus       376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl  455 (539)
T PF03137_consen  376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL  455 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence            44444333333333211100              010     00      0                   0  0011111


Q ss_pred             HHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhh
Q 036040          213 MYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQ  269 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~  269 (338)
                      +..++..+............+-..+|++.|+.|.|+...+.++ |.+-+|++++.+.|
T Consensus       456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD  513 (539)
T PF03137_consen  456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID  513 (539)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence            1111222222222223334556778999999999999877666 88889999999985

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.86  E-value=3.8e-05  Score=68.96  Aligned_cols=156  Identities=10%  Similarity=0.052  Sum_probs=87.8

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc-c--cchhhHHHHHHHHHHhhccCccce
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ-K--HNSTGFVVMYALTFFFANFGPNST  228 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      ...+..++.++|..+.....-+..-|+++.++.++.++..+.-......+.. .  ......+.--.+..........| 
T Consensus       260 ~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP-  338 (433)
T PF03092_consen  260 LSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMP-  338 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHH-
Confidence            3356666666666666666666676777777655444433322211111100 0  00111111111222222222233 


Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      ...+++|+.|+..-|+.+++...+.++|..++..+...+.+..+.+.+     +..+.....++..++.++.+.+..++|
T Consensus       339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~-----~f~~l~~lili~~~~~ll~l~ll~lLp  413 (433)
T PF03092_consen  339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD-----DFSNLWLLILICSVIQLLPLPLLFLLP  413 (433)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-----cccchHHHHHHHHHHHHHHHHHHHHcC
Confidence            235689999999999999999999999999999999988865543221     122334445555566656666655777


Q ss_pred             cCCCC
Q 036040          309 EPNGR  313 (338)
Q Consensus       309 e~~~~  313 (338)
                      +.++.
T Consensus       414 ~~~~~  418 (433)
T PF03092_consen  414 PQKRI  418 (433)
T ss_pred             CCchh
Confidence            75543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.76  E-value=0.00064  Score=59.02  Aligned_cols=155  Identities=12%  Similarity=0.014  Sum_probs=97.2

Q ss_pred             ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchh
Q 036040          130 VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-IIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNST  208 (338)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (338)
                      +|++..+            +...+.....+.++|....|++.. |.+++++..+++.++.++..++......     ...
T Consensus       239 fgmsv~e------------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-----~~~  301 (403)
T PF03209_consen  239 FGMSVGE------------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-----GSP  301 (403)
T ss_pred             cCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----ccc
Confidence            5777655            444777888888888888888877 6778888888888888777766654421     112


Q ss_pred             hHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHH
Q 036040          209 GFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKN  288 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (338)
                      ..+....+..+++.+......-+...++.+++..|..+|.-.....+...++..+.+.+.|.......+   ....+|..
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~~~~aY~~  378 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---SPALAYGV  378 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcchHHHH
Confidence            222222222222222222222344567777788899999999888888888888888877532111000   13456777


Q ss_pred             HHHHHHHHHHHhHhhe
Q 036040          289 TLFLLAAVNVLGLLFT  304 (338)
Q Consensus       289 ~~~~~~~~~~~~~~~~  304 (338)
                      +|.+-++..+++..+.
T Consensus       379 VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  379 VFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777666666555543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.74  E-value=0.00011  Score=66.14  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040          163 GYWITVILIDII-----GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF  237 (338)
Q Consensus       163 ~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  237 (338)
                      ..++.|.++|-+     .||+.++++.+++.++.+.++......    .+.....+..++..++........-++..|..
T Consensus        40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~----~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~  115 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE----SSAAIAVVLLFLASFGYAFADVAADALVVELA  115 (433)
T ss_pred             HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc----chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            466789999975     466666667666655555444433211    11112222222222222222334445566665


Q ss_pred             ---CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040          238 ---PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE  309 (338)
Q Consensus       238 ---p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e  309 (338)
                         |.+ |+.-.+.......+|++++..+.+.+.             +..+++..|.+.+.+..+..+..+ +.+|
T Consensus       116 ~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~-------------~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  116 RREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL-------------DSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh-------------hcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence               444 888888888899999999999999887             566777777777777666665555 5555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.70  E-value=0.00014  Score=63.04  Aligned_cols=107  Identities=13%  Similarity=-0.033  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHhhc-----hHHHHHHH-HHHHHHHHHHHHhhhhhccc-----ccchhhH---HHHHHHHHHhhccCccc
Q 036040          162 PGYWITVILIDIIG-----RVTIQLIG-FFFMTVFMLALAIPYHHWIQ-----KHNSTGF---VVMYALTFFFANFGPNS  227 (338)
Q Consensus       162 ~~~~~~g~l~d~~g-----rr~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~  227 (338)
                      +..+..|+.+|+.+     ||..+++. ...++.+..+..+.......     ..+.+..   ....+...+.+......
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            36788999999988     77666554 44444433433333322211     1112221   11222223333333345


Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ...++++|..|++.|+++.++....--+|.+++..+.+.+.
T Consensus       109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen  109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            56678999999999999999999999999999999999988

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.62  E-value=9.9e-06  Score=74.37  Aligned_cols=178  Identities=14%  Similarity=0.023  Sum_probs=1.7

Q ss_pred             hccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040          120 NLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH  199 (338)
Q Consensus       120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  199 (338)
                      ..-.+++-++++++..+.            +++.+..-++.++..++..++.+|..|-+.+-++.++++++.+++++++.
T Consensus        23 ~~~lttiErRF~l~S~~~------------G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf   90 (539)
T PF03137_consen   23 NSSLTTIERRFGLSSSQS------------GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF   90 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence            334556666788888774            34788888888888888899999888888888899999999888887653


Q ss_pred             hccc------c--------------------------------c-c---hhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040          200 HWIQ------K--------------------------------H-N---STGFVVMYALTFFFANFGPNSTTFIVPAEIF  237 (338)
Q Consensus       200 ~~~~------~--------------------------------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  237 (338)
                      ....      .                                . .   ...++++..++.+.+....++.-.+|+-|..
T Consensus        91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv  170 (539)
T PF03137_consen   91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV  170 (539)
T ss_dssp             -------------------------------------------------------------SSS----------------
T ss_pred             hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence            1100      0                                0 0   1122333334555555566778888999999


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCC-------CCCCCCCCcc-hHHHHHHHHHHHHHhHhheeecc
Q 036040          238 PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ-DKSK-------ADPGYPAGIG-IKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      +++.-+...|+.+....+|-.+|-.+.+...... |...       ..|.-+...| |...|++.+++.++..+..++.|
T Consensus       171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  171 SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999899999998888888888777777665432 1111       1122222233 66777777777777666666544


Q ss_pred             c
Q 036040          309 E  309 (338)
Q Consensus       309 e  309 (338)
                      +
T Consensus       251 k  251 (539)
T PF03137_consen  251 K  251 (539)
T ss_dssp             -
T ss_pred             c
Confidence            4

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.58  E-value=0.0021  Score=57.19  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=87.5

Q ss_pred             HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040          114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA  193 (338)
Q Consensus       114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  193 (338)
                      +..-++...+..|+.+.|+++..            -+..-....+.++.|.++..++.+|+|..+.-.++......+..+
T Consensus       272 ~TVLsf~~lmt~yl~~~G~s~~~------------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  272 FTVLSFGGLMTAYLKSQGYSPSV------------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHhcCcHHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            33445566677888887888755            233556677778889999999999999888877776665555444


Q ss_pred             HHhhhhhccccc---chhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          194 LAIPYHHWIQKH---NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       194 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      ..... +.....   .....++...+..-.+.-+..-...-+++|..|++.|++..|.-+...++...+.-.+.-
T Consensus       340 ~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  340 CVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            43332 111111   112222222222222233333344567899999999999999999988887776554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.57  E-value=0.00083  Score=60.47  Aligned_cols=105  Identities=9%  Similarity=0.002  Sum_probs=74.5

Q ss_pred             HhccchhHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040          157 LCGLIPGYWITV-ILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE  235 (338)
Q Consensus       157 ~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  235 (338)
                      .....++.++.. .+...+|-|++...|+....+.....++....       + ......+ .........+...+..+-
T Consensus       287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-------w-~~~~~~v-~~~~~~~~~pa~~s~~s~  357 (463)
T KOG2816|consen  287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-------W-MMFAAGV-VVALAGIVFPAIRAFASI  357 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-------h-hhhHHHH-HHHhhcchhHHHHhHHHh
Confidence            333344444444 77888898888888888888888888776631       1 2222222 222334445667778888


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040          236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD  270 (338)
Q Consensus       236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~  270 (338)
                      +..++.+|++.++...+..+.++++|.+.+.+...
T Consensus       358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999888643

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.41  E-value=0.003  Score=53.39  Aligned_cols=130  Identities=19%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      .......+...++.++.|.+.||+|||+.+..+.....+..++..+...      .............+.......+...
T Consensus        43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~  116 (338)
T COG0477          43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGGGLLPVAS  116 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3455556666666689999999999998777776543333233332221      1123333333333333444556677


Q ss_pred             eeecccCCc-cchhhhHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040          231 IVPAEIFPA-RFRSTCHGISAA-AGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN  297 (338)
Q Consensus       231 ~~~~e~~p~-~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      ++..|.+|. +.|+...+.... ...++..+++.+.+.+...           ...+|+..+.......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  174 (338)
T COG0477         117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-----------LLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcchHHHHHHHHHHH
Confidence            888999988 678888888877 5677888888777766531           2356777665555444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.38  E-value=0.0038  Score=58.56  Aligned_cols=200  Identities=12%  Similarity=-0.033  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI  182 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~  182 (338)
                      .+..+..+.+.+..--+..-..++=++++++..+.+.            +....-++..+...+..+..-|.-|-+++-+
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~------------I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~  167 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGL------------IASSYDIGNLLLIIFVSYFGSRGHRPRWIGI  167 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCccee------------EeeecccchhhhhHhHHHhccccCccceeee
Confidence            3333333443333322333445555567888777443            5555666666667777888888888889999


Q ss_pred             HHHHHHHHHHHHHhhhhhcc--------------cc---------------------------cc---hhhHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWI--------------QK---------------------------HN---STGFVVMYALTF  218 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~--------------~~---------------------------~~---~~~~~~~~~~~~  218 (338)
                      ++++++++.++.+++.....              ..                           ..   .+.++++..++.
T Consensus       168 G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~  247 (735)
T KOG3626|consen  168 GLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLL  247 (735)
T ss_pred             chhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHh
Confidence            99999999998887742100              00                           00   112333333445


Q ss_pred             HhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC-CC----CCCCCCCcc-hHHHHHH
Q 036040          219 FFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS-KA----DPGYPAGIG-IKNTLFL  292 (338)
Q Consensus       219 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~~~~~~  292 (338)
                      +.+....++.-.+|+-|..-++.-..-.|+.++...+|-++|-++.+.+.....+. ..    +|.-+...| |...|++
T Consensus       248 GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  248 GIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             hcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            55555566777788999988888888889998888888888888777776543222 11    121112223 6777888


Q ss_pred             HHHHHHHhHhheeecccCCCCC
Q 036040          293 LAAVNVLGLLFTFLVPEPNGRS  314 (338)
Q Consensus       293 ~~~~~~~~~~~~~~~~e~~~~~  314 (338)
                      .+.+.++..+..++.|.+..++
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCccc
Confidence            8888888888777777655443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.22  E-value=0.0017  Score=43.21  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=62.5

Q ss_pred             hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040          113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML  192 (338)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  192 (338)
                      .++-+..+..+|.+.++.+++.++            +.++.+..+++.++|.+...++.++.++++.+..+.+.+.+...
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~------------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQ------------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTA   72 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            345667788899999998888866            67789999999999999999999998888999999888888888


Q ss_pred             HHHhhh
Q 036040          193 ALAIPY  198 (338)
Q Consensus       193 ~~~~~~  198 (338)
                      .+++..
T Consensus        73 ~ma~~~   78 (85)
T PF06779_consen   73 AMALTH   78 (85)
T ss_pred             HHHHHh
Confidence            777665

Note that many members are hypothetical proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.21  E-value=0.013  Score=53.42  Aligned_cols=116  Identities=9%  Similarity=-0.042  Sum_probs=70.1

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhch--H-----HHHHHHHHHHHHHHHHHHhhhhhcccc-cchhhHHHHHHHHHHhhcc
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGR--V-----TIQLIGFFFMTVFMLALAIPYHHWIQK-HNSTGFVVMYALTFFFANF  223 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~gr--r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  223 (338)
                      ..++..+..++.+++.+++=.|.+|  |     .-+.+++++++++.+++.+.......+ ..+..+++...++...+-.
T Consensus       313 ~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl  392 (493)
T PRK15462        313 FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL  392 (493)
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence            3444445445555555666555532  2     135677777777777666544322221 1334444445555555566


Q ss_pred             CccceeeeeecccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHh
Q 036040          224 GPNSTTFIVPAEIFPARFRSTCHGISAAAG-KAGAIIGAFGFLYA  267 (338)
Q Consensus       224 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~g~~~~~~~~~~~  267 (338)
                      ...|+..++++++.|++.||..+|...... .+|..++..+....
T Consensus       393 ~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        393 FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667888889999999999999999986533 45555555554443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.13  E-value=0.014  Score=47.57  Aligned_cols=104  Identities=12%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccc--hhhHHHHHHHHHHhhccCcccee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHN--STGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      ..++...+.++|.+..|.....-=+|+.++...+.+.+.+.+++....+....++  ....+.++.++.+.+.-|.+++.
T Consensus       146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi  225 (267)
T PF07672_consen  146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI  225 (267)
T ss_pred             HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4444555555666666766664444444444444444433333333222222222  34445556666777777777776


Q ss_pred             eeeecccC--CccchhhhHHHHHHHHHH
Q 036040          230 FIVPAEIF--PARFRSTCHGISAAAGKA  255 (338)
Q Consensus       230 ~~~~~e~~--p~~~R~~~~~~~~~~~~~  255 (338)
                      -....|.=  .++.-|...|+.-.++.+
T Consensus       226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~  253 (267)
T PF07672_consen  226 LNLPHEYKGYNPKKIGIQFGLIWGFGYI  253 (267)
T ss_pred             hcChhhhcCCCcceehhHHHHHHHHHHH
Confidence            55555542  233335555554444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.12  E-value=0.011  Score=53.45  Aligned_cols=106  Identities=8%  Similarity=-0.081  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc-------------c--h--------hhHHHHHHHHHH
Q 036040          163 GYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH-------------N--S--------TGFVVMYALTFF  219 (338)
Q Consensus       163 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~--------~~~~~~~~~~~~  219 (338)
                      ..++.+++++|++|++++-+..........++++......+.-             .  .        .+...++.+..-
T Consensus        60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e  139 (472)
T TIGR00769        60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE  139 (472)
T ss_pred             HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence            3667899999999999988776666666666655532111100             0  0        011111111111


Q ss_pred             hhccCccc-eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          220 FANFGPNS-TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       220 ~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      ..+....+ ..|.+.+|++..++-.+-.++....+++|.++++.+...+.
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233 67889999999999999999999999999999998888775

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.09  E-value=0.016  Score=50.95  Aligned_cols=126  Identities=13%  Similarity=0.127  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040          165 WITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST  244 (338)
Q Consensus       165 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  244 (338)
                      +....+.|..|-|++++.+.+...+...++.+...        ...+-+.-++.+... +.....++|+=-..|++.--+
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--------v~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~  129 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--------VLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQK  129 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--------HHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHH
Confidence            36678999999999999987776666666655442        222333323222222 222334445555567777677


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040          245 CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP  310 (338)
Q Consensus       245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  310 (338)
                      +.+......-+|.+++..+...+...           ...++.....+......+++++.+++|..
T Consensus       130 vts~~raa~l~g~~~s~~lgQllvs~-----------~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  130 VTSYTRAATLVGRFISSLLGQLLVSF-----------GGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            78888887778888888887777631           34556666666555566666666667654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.043  Score=49.19  Aligned_cols=109  Identities=16%  Similarity=0.044  Sum_probs=76.3

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI  231 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (338)
                      ..++.+....+++++++.+.|+.|.|+.+.++........+.+.+..        .+...+.-.+ .+++....+..--.
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N--------~y~~yfssal-lG~Gaallw~GqG~  125 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN--------SYYLYFSSAL-LGFGAALLWTGQGG  125 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc--------hHHHHHHHHH-hhhhHHheecccce
Confidence            35556666667888999999999999999998666555554444333        2222333333 33333333444557


Q ss_pred             eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      |++|..+.+.+.+..++...+...+.++|..+...+..
T Consensus       126 ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  126 YLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            89999999999999999999999999998877666654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.88  E-value=0.0083  Score=52.67  Aligned_cols=61  Identities=15%  Similarity=0.048  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          208 TGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      .+.+++.++..+..++..+...+..+.|-.|++.|..++|.......+|..++..+.-.+.
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4444455555555555556666667788889999999999999988888888877766553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.79  E-value=0.0046  Score=54.57  Aligned_cols=115  Identities=11%  Similarity=-0.006  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccc-ccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc---chhhhHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWIQ-KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR---FRSTCHGISAAAG  253 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~  253 (338)
                      +++.++.++..++.+++.+....... .......+.+...+...+.++.-+...++.+|.++++   .|.+...+.+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45667777777777775544422111 1111233333344455566677778888899999765   5677888889999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ++|+.++..+.+++.             ++.||...|.+.++..+++.+..+
T Consensus        82 n~G~~~~~~~~~~i~-------------~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQ-------------QNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCCCHHH-------------HCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhc-------------cccchhhhhhHHHHHHHHHHHHHH
Confidence            999999999999997             688999999988888777766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.69  E-value=0.0021  Score=55.16  Aligned_cols=101  Identities=9%  Similarity=-0.056  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CCC--CCCcchH
Q 036040          211 VVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD-PGY--PAGIGIK  287 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~  287 (338)
                      +++..++.+.+.....+....+++++.|++.+++.+++...+..+|.+++|.+.+.+......+... .+.  ....+|+
T Consensus        13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~   92 (310)
T TIGR01272        13 FLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVH   92 (310)
T ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHH
Confidence            3333444444445556777888999999999999999999999999999999999887311000000 000  0114688


Q ss_pred             HHHHHHHHHHHHhHhhee--ecccCC
Q 036040          288 NTLFLLAAVNVLGLLFTF--LVPEPN  311 (338)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~--~~~e~~  311 (338)
                      .++++.+++.++..+...  -+||.+
T Consensus        93 ~~yl~ia~~~~~~~i~~~~~~~p~~~  118 (310)
T TIGR01272        93 TPYLLLAGALAVLAIIFAFLPLPELQ  118 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCC
Confidence            888866655444444333  446643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.019  Score=51.33  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHhhhhhcc---cc-------cchhhHHHHHH
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDI---IGRVTIQLIGFFFMTVFMLALAIPYHHWI---QK-------HNSTGFVVMYA  215 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~  215 (338)
                      ........+++.++++...+.+.+|   +||++++.++..+..+..++.-.....-.   ..       ........+..
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            4445666677777777788888765   68888888887776666555544332111   00       01123334444


Q ss_pred             HHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          216 LTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      ...++.-.......+.+++..+ ++.|..+.++.-+...+++.++-+..+..
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4455555555666777888888 56788888888887777777766666654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.54  E-value=0.035  Score=48.90  Aligned_cols=71  Identities=10%  Similarity=-0.042  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      ++.-.+-|.....+++-+..|...+-++..-++.....         .+..-+...+.+.++++..|++..++.+..-+.
T Consensus       249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vY---------NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~  319 (412)
T PF01770_consen  249 LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVY---------NGAVEAASTLLGAIAALLAGYVKVNWDRWGELA  319 (412)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCccc---------chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH
Confidence            33344444555566666667777666665112222111         223444444555557777888866665544333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.52  E-value=0.048  Score=49.09  Aligned_cols=53  Identities=17%  Similarity=0.067  Sum_probs=35.7

Q ss_pred             HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      .++.+...+-..+..+.+..+..+++.|..+..+...+-.+|-.+|..+.-.+
T Consensus       379 ~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       379 MLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334333333455666778888889998888888887777877777664433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.0056  Score=53.86  Aligned_cols=155  Identities=11%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hch
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGR  176 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr  176 (338)
                      .++.+..+.+...+++-.-..|.|.+++++|......++            .-...-+.+++..++.|..+||    +||
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GR  100 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGR  100 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceeccccccccccccccccc
Confidence            445556666666666777778889999999988876332            3344455566678888999996    788


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhhhc--ccccc-h---hhHHHHHH---HHHHhhccCccceeeeeecccCCccchhh-h
Q 036040          177 VTIQLIGF-FFMTVFMLALAIPYHHW--IQKHN-S---TGFVVMYA---LTFFFANFGPNSTTFIVPAEIFPARFRST-C  245 (338)
Q Consensus       177 r~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~R~~-~  245 (338)
                      |+.++... +...+.++++.+.....  ..++. .   ...+....   .+.=+........+-+++.++.....+.+ +
T Consensus       101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~A  180 (498)
T KOG0637|consen  101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRA  180 (498)
T ss_pred             ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhcc
Confidence            87766554 34444555555443211  11111 1   11121111   12223333445567788999987776666 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 036040          246 HGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       246 ~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      .+....+..+|+.+|-.+.++.
T Consensus       181 ns~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chhHHHHHHhcceeeeeccccc
Confidence            8888888888888777666544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.29  E-value=0.058  Score=47.29  Aligned_cols=155  Identities=12%  Similarity=-0.094  Sum_probs=83.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      ..++..+...+-+++-|.++|+.|+|+..+. ...+..++..++.+...     .+.+...+++..+......+......
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-----~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-----GSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHhcchhheehh
Confidence            3344444445566778999999996665544 44444444444444431     12333333333333333333344556


Q ss_pred             eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKA-----DPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      +++.++.+++.-++..++....+.+|+.+.-.+........+.+..     +....+....+.++.+.++-.++..+-.+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            7788888888878888888888888877655554222211110000     00111344567777777666655555444


Q ss_pred             -ecccCC
Q 036040          306 -LVPEPN  311 (338)
Q Consensus       306 -~~~e~~  311 (338)
                       ..++..
T Consensus       218 ~~v~~~~  224 (438)
T COG2270         218 LNVHDAE  224 (438)
T ss_pred             hcccccc
Confidence             555543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.032  Score=48.15  Aligned_cols=84  Identities=14%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-----hhc
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-----IIG  175 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g  175 (338)
                      .+..+.+.+..+.+-+... .-.|.+++.-|.|-++.+.            .....  --..--+++..+.|     |+|
T Consensus        32 ~illLl~LYllQGiP~GL~-~~iP~lL~ak~vSyt~~a~------------fS~ay--~P~sLKllWaPiVDs~y~k~~G   96 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLI-GAIPLLLQAKGVSYTSQAI------------FSFAY--WPFSLKLLWAPIVDSVYSKRFG   96 (510)
T ss_pred             hHHHHHHHHHHcCCchhHh-hhhHHHhcCCCcchhhhhh------------hhhhh--hHHHHHHHHHhhhHHHHHHhhc
Confidence            4455556666666555444 4788888865554443111            11100  01112447888888     999


Q ss_pred             hHHHHHH-HHHHHHHHHHHHHhhhh
Q 036040          176 RVTIQLI-GFFFMTVFMLALAIPYH  199 (338)
Q Consensus       176 rr~~~~~-~~~~~~~~~~~~~~~~~  199 (338)
                      ||+..++ +..+.+..+..++....
T Consensus        97 rrksWvvp~q~llG~~mllLs~~v~  121 (510)
T KOG3574|consen   97 RRKSWVVPCQYLLGLFMLLLSYLVD  121 (510)
T ss_pred             cccceeeehHHHHHHHHHHHhhCCC
Confidence            9886655 34444555666655443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.22  E-value=0.0028  Score=52.30  Aligned_cols=113  Identities=12%  Similarity=-0.005  Sum_probs=70.0

Q ss_pred             HHHHHHhccchhHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          152 QTLVALCGLIPGYWITVILIDI-IGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      +.++...-.++-++++|++.|| +|-|...++-+.+..++-++++.-..     .+..+.+....++++.++-.....-.
T Consensus        84 lYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----~~aFw~M~~GRF~FGIGgESlAVaQN  158 (459)
T KOG4686|consen   84 LYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----SHAFWTMLAGRFLFGIGGESLAVAQN  158 (459)
T ss_pred             eeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHhhheeeccCchhhhhhhc
Confidence            4555666677778899999997 57666555444444444443332211     02233444444444443333333445


Q ss_pred             eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .+..-+|-.+.-+.++|+.....++|+.+--.+.+++.+
T Consensus       159 ~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  159 KYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             ceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            667777887888999999999999998877777776654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.07  E-value=0.0059  Score=54.78  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040          229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLL  302 (338)
Q Consensus       229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (338)
                      ..+.-+|+..++.++++.|+....+..+..++|.+.....             ...|.++...+.++..++...
T Consensus       409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~-------------~~~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF-------------TLSGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhH-------------HhcCccHHHHHHHHHHHHHHH
Confidence            4456688899999999999999999999999998888776             456766666555544444333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.05  E-value=0.33  Score=45.30  Aligned_cols=178  Identities=13%  Similarity=0.048  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHH
Q 036040          101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVT  178 (338)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~  178 (338)
                      ....+...-.+....+++....+-.|+.. ++.....            +.-.............+++++++|- +||-+
T Consensus        38 s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~  105 (571)
T KOG1237|consen   38 SAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------------AANNVNAFGGTQFLLPLLGAFLADSFLGRYF  105 (571)
T ss_pred             hHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence            33444444445556666664444444433 4443322            1222333333444566789999997 58989


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcc----------c----ccchh---hHHHHHHHHHHhhccCccceeeeeecccCCc--
Q 036040          179 IQLIGFFFMTVFMLALAIPYHHWI----------Q----KHNST---GFVVMYALTFFFANFGPNSTTFIVPAEIFPA--  239 (338)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--  239 (338)
                      ++.++.++..+++.++........          .    .....   ..+.........+.++.-+...++-+|.++.  
T Consensus       106 tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~  185 (571)
T KOG1237|consen  106 TINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELD  185 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccC
Confidence            998888888777665554332110          0    00111   1222222233335566667777788888872  


Q ss_pred             --cc--hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040          240 --RF--RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       240 --~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (338)
                        +.  +...+.+.++..++|..++..+..+..             ++.+|...|-+..++.++++++
T Consensus       186 ~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq-------------~~~~w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  186 PVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ-------------DNVGWKLGFGIPTVLNALAILI  240 (571)
T ss_pred             cchhhCcccchhHHHHHHHHHHHHHHHHHHhhh-------------hcccceeeccHHHHHHHHHHHH
Confidence              22  235667777777888888888888885             5677777776666555554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.95  E-value=0.3  Score=43.78  Aligned_cols=141  Identities=10%  Similarity=-0.029  Sum_probs=76.0

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh----hhhhccccc-chhhHHHHHH--HHHH-hhcc
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI----PYHHWIQKH-NSTGFVVMYA--LTFF-FANF  223 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~  223 (338)
                      ......+..++.+...|...||..|.+....+.++.-++..+...    ......... +......++.  ...+ ....
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L  122 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL  122 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            445555666667777899999999988877665544333322221    111111110 0111111111  1111 1111


Q ss_pred             Cccceeeeeeccc----C--CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040          224 GPNSTTFIVPAEI----F--PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN  297 (338)
Q Consensus       224 ~~~~~~~~~~~e~----~--p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (338)
                      +......+.--|+    .  ++.......+...-+-....+++|++.+.+.             +..+...+..+.++..
T Consensus       123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~-------------t~~s~~~~~~~i~~~N  189 (432)
T PF06963_consen  123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM-------------TFASPVIAAIFIAGWN  189 (432)
T ss_pred             HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHH
Confidence            1111111112222    2  3444556666666666779999999999997             5678888888888887


Q ss_pred             HHhHhhee
Q 036040          298 VLGLLFTF  305 (338)
Q Consensus       298 ~~~~~~~~  305 (338)
                      ++++..=+
T Consensus       190 ~~S~~vEy  197 (432)
T PF06963_consen  190 LASVFVEY  197 (432)
T ss_pred             HHHHHHHH
Confidence            77766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.75  E-value=0.07  Score=47.82  Aligned_cols=114  Identities=14%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHhhhhhcc--cccchhhHHHHHHHHHHhhc
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRV-------TIQLIGFFFMTVFMLALAIPYHHWI--QKHNSTGFVVMYALTFFFAN  222 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  222 (338)
                      ..++..+.-++.+++..++..|.+++       .-+-++..+++.+.+++.....+..  ....+..+.+...++..++-
T Consensus       329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gE  408 (498)
T COG3104         329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGE  408 (498)
T ss_pred             HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHH
Confidence            44555555566666667777775443       2344566666666666665532322  23345556666666666666


Q ss_pred             cCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          223 FGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       223 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      ....|+-.+++..+.|++..+..++........++.++..+.+
T Consensus       409 L~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         409 LFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            7777788888999999998888888877766666666665555

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.64  E-value=0.0046  Score=55.54  Aligned_cols=69  Identities=17%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040          109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT  188 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  188 (338)
                      .+......-.+..+++.+.+.+|+++.+.+.            ++...-+..+++.+++|+++||+.+|+.++++..+..
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gt------------l~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~   87 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGT------------LTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLS   87 (618)
T ss_pred             eeeeeecccccchHHHHHHHHcCCCHHHhhh------------hhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            3444455666778899999999999987443            5666666777899999999999987766666554444


Q ss_pred             H
Q 036040          189 V  189 (338)
Q Consensus       189 ~  189 (338)
                      +
T Consensus        88 v   88 (618)
T KOG3762|consen   88 V   88 (618)
T ss_pred             H
Confidence            3

>PRK03612 spermidine synthase; Provisional

Probab=95.20  E-value=0.64  Score=43.04  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040          243 STCHGISAAAGKAGAIIGAFGFLYAA  268 (338)
Q Consensus       243 ~~~~~~~~~~~~~g~~~~~~~~~~~~  268 (338)
                      +...|-.+..+.+|+++|+++.+.+.
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vL  169 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLL  169 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence            56678888899999999999988876

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.18  E-value=0.11  Score=45.71  Aligned_cols=130  Identities=17%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeee
Q 036040          154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVP  233 (338)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
                      ..-.+-.++..+++.++.+|+.-+.-.....+++.+++++.++..       + ...-++..++ ...+.+..-+.+.-.
T Consensus        66 ladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~-------~-v~~~l~Gv~l-as~ssg~GE~tfL~l  136 (402)
T PF02487_consen   66 LADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP-------S-VWVRLLGVVL-ASLSSGLGEVTFLSL  136 (402)
T ss_pred             HHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc-------c-hhHHHHHHHH-HhhhhhhhHHHHHHH
Confidence            333445556667788889987532223333445555555555533       1 2222222222 222222222222223


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040          234 AEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP  308 (338)
Q Consensus       234 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  308 (338)
                      +..+|+.    +.+-.......++++|+.....+..            ...+.+..+++...+.++..+..+ .+|
T Consensus       137 t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~------------~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  137 THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT------------LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH------------hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455543    2333334445567777777766652            234556677766666554444333 444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.08  E-value=0.092  Score=47.34  Aligned_cols=60  Identities=8%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR  176 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  176 (338)
                      .+=|.....+++-+..|...+-++.  .+++...         ++..-++..+.+.++++..|++-.++.+
T Consensus       268 SlWwa~a~~g~~qv~~Y~Q~LW~~v--~~~~~~y---------NG~veA~~tllga~~a~~ag~~~~~w~~  327 (511)
T TIGR00806       268 SLWWVFNSAGYYLITYYVHTLWGTL--DESLNKY---------NGAVDAASTLLGAITSFIAGFVNIRWAR  327 (511)
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHc--CCCcccc---------CCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            3334445556666666666665553  2221112         1223333444445567778888665543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.03  E-value=0.0043  Score=53.15  Aligned_cols=51  Identities=16%  Similarity=0.090  Sum_probs=2.8

Q ss_pred             HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040          215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL  265 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~  265 (338)
                      .++.++..+-..+..+.+..+..+++.|..+..+...+-..|-.+|..+.-
T Consensus       255 ~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  255 MLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             ------------HHHH-----------------------------------
T ss_pred             HHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445667778888888888888877777766667666665543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.93  E-value=0.35  Score=43.64  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             HHHHHHHH-----hhchHHHHHHHH-HHHHHHHHHHHhh
Q 036040          165 WITVILID-----IIGRVTIQLIGF-FFMTVFMLALAIP  197 (338)
Q Consensus       165 ~~~g~l~d-----~~grr~~~~~~~-~~~~~~~~~~~~~  197 (338)
                      +++.++.|     |+|||+..++.. .++++.++.++..
T Consensus        53 lLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~   91 (544)
T PF13000_consen   53 LLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYN   91 (544)
T ss_pred             HhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhc
Confidence            35666666     789998777643 4444445554433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.70  E-value=0.23  Score=45.28  Aligned_cols=109  Identities=12%  Similarity=0.015  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcc---cccc------------h---------hhHHHHHHH
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWI---QKHN------------S---------TGFVVMYAL  216 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~---------~~~~~~~~~  216 (338)
                      ++...+-.+++++++|.+++-+..........++++..+...   +.+.            .         +...+....
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            334456789999999999887766655555555554432111   0100            0         011111111


Q ss_pred             HHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          217 TFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .-..++....-..|.+.+|+++.++-.+-+++....+++|.++++.+.....+
T Consensus       153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111112468899999999999999999999999999999988887764

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.08  E-value=0.39  Score=43.33  Aligned_cols=44  Identities=11%  Similarity=0.015  Sum_probs=35.9

Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ  271 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  271 (338)
                      ...++-+.+.+|..-|+-|.+.|++.++|+-.-..+.-.+.|..
T Consensus       425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            34466678889999999999999999999988877777776643

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.28  E-value=0.72  Score=40.64  Aligned_cols=54  Identities=7%  Similarity=0.020  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          210 FVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      +.+......+...+-..+..+.+..+..|++.+-.+-.+...+-..|...|..+
T Consensus       345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            344444444544555566777888888888887766555555544455444443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.93  E-value=3.4  Score=37.43  Aligned_cols=110  Identities=10%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc---cc-----------c-h----------hhHHHHH
Q 036040          160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ---KH-----------N-S----------TGFVVMY  214 (338)
Q Consensus       160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~-~----------~~~~~~~  214 (338)
                      .++..++-.++.+++.|++++-..+.....+.+++++..+...+   .+           + .          +...+..
T Consensus        75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y  154 (509)
T COG3202          75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY  154 (509)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence            34455667888888888888877766666666666655431110   00           1 0          1111111


Q ss_pred             HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      .+.-.-.+....-..|....|++..++-.+-+++.+..++++..++..+..++..
T Consensus       155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111111122467778999999999999999999999999999988888763

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.14  E-value=13  Score=33.03  Aligned_cols=57  Identities=12%  Similarity=-0.091  Sum_probs=27.2

Q ss_pred             HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 036040          108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI  173 (338)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  173 (338)
                      ........++.+.+-.+.+.++.-..+.         +.......+....+..++....-.++.-|
T Consensus        26 lGiG~LlpWN~fiTa~~y~~~~~~~~~~---------~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   26 LGIGTLLPWNMFITASDYYYYRFPGYHN---------SKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             HhcccccchHhhhccHHHHHhhcCCCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445566666666666555322221         12223334444444455555555555556

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=89.63  E-value=1.6  Score=32.75  Aligned_cols=88  Identities=8%  Similarity=0.076  Sum_probs=46.8

Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040          168 VILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST  244 (338)
Q Consensus       168 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~  244 (338)
                      -.++||+-||..+..+.-. ++++..+...+......   -+.+..++.-.+   +++.+...+.|.+++-...++.-|.
T Consensus        55 ~~Vs~RM~rRm~~~~GiP~-~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~---~Fg~gllGisYGilSaSWD~~r~GS  130 (153)
T PF11947_consen   55 EVVSNRMLRRMAVFVGIPT-ALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLV---FFGLGLLGISYGILSASWDPEREGS  130 (153)
T ss_pred             HHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHhccccccCchHHHHHHHH---HHHHHHHhhhhhhcccccCCCCCCC
Confidence            4468999998777665322 22222222111111111   112222222222   2223334456777777888888899


Q ss_pred             hHHHHHHHHHHHHHH
Q 036040          245 CHGISAAAGKAGAII  259 (338)
Q Consensus       245 ~~~~~~~~~~~g~~~  259 (338)
                      ..|+-.+-.+++-+.
T Consensus       131 llG~~e~~~N~~r~~  145 (153)
T PF11947_consen  131 LLGWEEFKRNWGRMW  145 (153)
T ss_pred             cccHHHHHHhHHHHH
Confidence            999988877776554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.46  E-value=0.31  Score=40.32  Aligned_cols=31  Identities=16%  Similarity=-0.070  Sum_probs=20.8

Q ss_pred             HHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          153 TLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      .+.......+...+.|-++||-|||+..+.-
T Consensus        78 fiaGfgSsmLFGtivgSLaDkqGRKracvty  108 (454)
T KOG4332|consen   78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTY  108 (454)
T ss_pred             eecccchHHHHHHHHHHHHhhhccccceeee
Confidence            3333444445566778999999999875544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.98  E-value=16  Score=30.72  Aligned_cols=97  Identities=11%  Similarity=-0.009  Sum_probs=48.1

Q ss_pred             HHHHHHhccchhHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040          152 QTLVALCGLIPGYWITVILIDIIGRV--TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT  229 (338)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
                      +.....++.++|+-+...+..|-..|  ..+.+..++.+....+............+....++.++.+- .+.+..+|..
T Consensus       287 iFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E-~cvGlfwPSi  365 (454)
T KOG4332|consen  287 IFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFE-ACVGLFWPSI  365 (454)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHH-HHHhhcchHH
Confidence            34444555566666665655543332  34444444444443333332221111222233333333333 3344456666


Q ss_pred             eeeecccCCccchhhhHHHH
Q 036040          230 FIVPAEIFPARFRSTCHGIS  249 (338)
Q Consensus       230 ~~~~~e~~p~~~R~~~~~~~  249 (338)
                      .-+-+...|.+.|++.+-+.
T Consensus       366 mkmRsqyIPEearstimNfF  385 (454)
T KOG4332|consen  366 MKMRSQYIPEEARSTIMNFF  385 (454)
T ss_pred             HHHHHhhCCHHHHhhhhhhe
Confidence            67778889999998765544

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=85.55  E-value=23  Score=30.65  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             hccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040          158 CGLIPGYWITVILIDIIGRVTIQLIGFF  185 (338)
Q Consensus       158 ~~~~~~~~~~g~l~d~~grr~~~~~~~~  185 (338)
                      +.-+..+++.+.++.++|-|+++..+..
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~   96 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVF   96 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3334455566789999999999877633

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.18  E-value=2.1  Score=29.63  Aligned_cols=31  Identities=23%  Similarity=0.059  Sum_probs=19.2

Q ss_pred             chhHHHHHHHHHhh-chHHHHHHHHHHHHHHH
Q 036040          161 IPGYWITVILIDII-GRVTIQLIGFFFMTVFM  191 (338)
Q Consensus       161 ~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~  191 (338)
                      ++.....||+.||+ |.+++.++.+++.+++.
T Consensus        56 ilVGa~iG~llD~~agTsPwglIv~lllGf~A   87 (116)
T COG5336          56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA   87 (116)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            33444579999996 67776666544444433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=83.53  E-value=1.8  Score=37.85  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=35.9

Q ss_pred             eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040          228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ  269 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~  269 (338)
                      ..++..+.+.|+..-|+-|.+.++..++|+-.-..+...+.|
T Consensus       389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            345667889999999999999999999998888888887764

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.10  E-value=15  Score=33.30  Aligned_cols=25  Identities=12%  Similarity=0.211  Sum_probs=12.5

Q ss_pred             HHHHhhccCccceeeeeecccCCccc
Q 036040          216 LTFFFANFGPNSTTFIVPAEIFPARF  241 (338)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~e~~p~~~  241 (338)
                      ++.+.+.....+..+.+.+ .+|++.
T Consensus       114 ~~~g~~~~~~q~s~~gla~-~fp~~~  138 (437)
T TIGR00939       114 VIINSGMALLQGSLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHhhhhhhcccchhhcc-cCCHHH
Confidence            3334444444455555555 667654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.56  E-value=12  Score=32.55  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=34.3

Q ss_pred             HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL  181 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~  181 (338)
                      .+-|.....++|-+..|...+=++..  ++...        ...+..-++..+.+.++.+..|++.-++.|..-++
T Consensus       240 SlWwAl~scg~~QV~nY~Q~LW~~~~--~~~~~--------vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~l  305 (433)
T KOG3810|consen  240 SLWWALASCGYYQVTNYTQILWKEVA--PNPAN--------VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLL  305 (433)
T ss_pred             HHHHHHhhchhHHHHHHHHHHHHhhC--CCchh--------hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHH
Confidence            33344455566666666666555533  21110        01222334444555667778888877776654333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.69
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.68
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.66
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.58
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.52
2xut_A	524	Proton/peptide symporter family protein; transport	99.51
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.33
2xut_A	524	Proton/peptide symporter family protein; transport	99.07
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.95

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=9.1e-30  Score=230.99  Aligned_cols=282  Identities=19%  Similarity=0.275  Sum_probs=191.4

Q ss_pred             CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040            1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD   80 (338)
Q Consensus         1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (338)
                      ||+++.+..+++++.++.++++||||||| ..+++.+++.+.+++..+.+..     +++..+.++.   .+    +  .
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L-~~~~~~~~a~~~l~~~~~~~~~-----~~~~~~~~~~---~~----~--~  263 (491)
T 4gc0_A          199 WRYMFASECIPALLFLMLLYTVPESPRWL-MSRGKQEQAEGILRKIMGNTLA-----TQAVQEIKHS---LD----H--G  263 (491)
T ss_dssp             HHHHHHTTHHHHHHHHHHGGGSCCCHHHH-HHTTCHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---HH----H--H
T ss_pred             hHHHhhhhhhhhhhhhhhhhcCCCChHHH-HHcCchhHHHHhHHHhcCCchh-----HHHHHHHHHH---HH----h--h
Confidence            78888889999999999999999999998 7777788888887776654321     1111111110   00    0  0


Q ss_pred             ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040           81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL  160 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
                      ++..      ......+..+..+......+.....++....|.|.+.+..+.+...            .........+..
T Consensus       264 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  325 (491)
T 4gc0_A          264 RKTG------GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------------ALLQTIIVGVIN  325 (491)
T ss_dssp             HHHT------THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------------HHHHHHHHHHHH
T ss_pred             hhhh------hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------------hhhHHHHHHHHH
Confidence            0000      0111111122344445555556667777778888888776554422            333556667778


Q ss_pred             chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040          161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR  240 (338)
Q Consensus       161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  240 (338)
                      +++.++++++.||+|||+.++.+...+.++++.++.....   ............+...++..+..++.+.+.+|++|++
T Consensus       326 ~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~  402 (491)
T 4gc0_A          326 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  402 (491)
T ss_dssp             HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence            8899999999999999999999988888877766654421   1122233333344444556667778889999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhhh
Q 036040          241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEIS  319 (338)
Q Consensus       241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~  319 (338)
                      .|++++|+.++.+++++++++.+.+.+.+....       ....++...|++++++++++.++.+ ++||||++++||++
T Consensus       403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            999999999999999999999998877421000       0123455678888888888888877 89999999999998


Q ss_pred             hhhhhh
Q 036040          320 GEIEEC  325 (338)
Q Consensus       320 ~~~~~~  325 (338)
                      +..+++
T Consensus       476 ~~f~~~  481 (491)
T 4gc0_A          476 ALWEPE  481 (491)
T ss_dssp             GGTC--
T ss_pred             HHhCCC
Confidence            876544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.78  E-value=2.5e-19  Score=160.41  Aligned_cols=175  Identities=11%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHH
Q 036040          103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTI  179 (338)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~  179 (338)
                      +...+..++....+++...+.|.++++ .|+++.+            .........++.+++.+++|++.||+  |||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            444455556666777788889988877 5665533            44466777888899999999999999  99998


Q ss_pred             HHHHHHHHH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HH
Q 036040          180 QLIGFFFMT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GA  257 (338)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~  257 (338)
                      +..+..+.. ++.+++.+..     . ..........+..+++..+..+..+.+..|.+|++.|+++.|+.+...++ |.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~  396 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNP-----A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  396 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC-----T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence            887765554 3333332221     1 12222333333344444444555667899999999999999999999999 99


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      .++|.+.+.+.             +..|+...|++.+++.+++.++.++.+
T Consensus       397 ~~~~~~~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          397 VAASAIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHH-------------HSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------------HhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998             567889999888888887777666443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.69  E-value=6.1e-17  Score=144.84  Aligned_cols=186  Identities=12%  Similarity=0.008  Sum_probs=140.6

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040           97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR  176 (338)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr  176 (338)
                      ..++.++...+..+......+....+.|.+.+++ .++.+            .........++..++.+++|+++||+||
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~   91 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNP   91 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------------HHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------------HHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence            3344556666666777777777778888887777 66655            3446777888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      |++++++.++.+++.++.++....    ......+++..++.+.+.....+...++++|.+|++.|++++|+......+|
T Consensus        92 r~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A           92 RVFLPAGLILAAAVMLFMGFVPWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHH----HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhc----cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence            999999999988888887762110    0113344444555555555556777789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          257 AIIGAFGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .+++|.+.+.+.             +..+ |+..|++.++++++..++.+ ++||++.
T Consensus       168 ~~~g~~~~~~l~-------------~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          168 GGIPPLLFLLGM-------------AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HTSHHHHHHHHH-------------HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999999876             4567 99999988888777666554 6676543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.68  E-value=2.2e-16  Score=140.68  Aligned_cols=162  Identities=9%  Similarity=-0.050  Sum_probs=113.9

Q ss_pred             HHHHHHHhHhhhhhhccHHHH-HHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          106 ASTWLLLDVSYFSQNLFQKEI-FTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      .+..++.....++...+.|.+ +++. |+++.+            .........++.+++.+++|+++||+|||+++..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~  331 (438)
T 3o7q_A          264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY  331 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            334444555666777888888 7774 665533            44566677888889999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      .++..++.+++.+...        ...... .++.+++.....+..+++..|.+|++ |+++.++.. .+.+|+.++|.+
T Consensus       332 ~~~~~~~~~~~~~~~~--------~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~  400 (438)
T 3o7q_A          332 ALIAMALCLISAFAGG--------HVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV  400 (438)
T ss_dssp             HHHHHHHHHHHHHCCH--------HHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--------cHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence            8777776665554431        122222 23334444555677888889999977 888888877 678999999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhh
Q 036040          264 FLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLF  303 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  303 (338)
                      .+.+.             +..| ++..|++.+++.++..++
T Consensus       401 ~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          401 MGFVS-------------DAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHH-------------HHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHH-------------HHhcchHHHHHHHHHHHHHHHHH
Confidence            99998             4556 777777665555444443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.66  E-value=1.7e-15  Score=135.04  Aligned_cols=152  Identities=10%  Similarity=-0.058  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040          100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI  179 (338)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~  179 (338)
                      +.++.+.+..+......+......|.+.+++|.++.+            .........++..++.+++|+++||+|||+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~   93 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAG   93 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence            3445555666666677777888899998998888755            4457778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040          180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII  259 (338)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~  259 (338)
                      ++++.++.+++.++......     .+....+++..++.+.+.....+...++++|.+|++.|++++++.+....+|..+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  168 (438)
T 3o7q_A           94 IITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII  168 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            99999888888877732210     0223444555555565555666677889999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 036040          260 GAFGFLYAA  268 (338)
Q Consensus       260 ~~~~~~~~~  268 (338)
                      ++.+.+.+.
T Consensus       169 g~~~~~~l~  177 (438)
T 3o7q_A          169 AVVFGQSLI  177 (438)
T ss_dssp             HHHHTTHHH
T ss_pred             HHHHHHHHH
Confidence            999999886

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.64  E-value=6e-16  Score=137.20  Aligned_cols=142  Identities=15%  Similarity=0.083  Sum_probs=97.5

Q ss_pred             HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040          151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF  230 (338)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (338)
                      ....+..++.+++.++.++++||+|||+++..+.++.++..+++.+..       +... +.....+.++......+..+
T Consensus       263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~  334 (417)
T 2cfq_A          263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------SALE-VVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-------SHHH-HHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-------cHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            345555667778889999999999999998887766666544443221       1122 22211111211112223346


Q ss_pred             eeecccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040          231 IVPAEIFPARFRSTCHGIS-AAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP  308 (338)
Q Consensus       231 ~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  308 (338)
                      .+++|.+|++.|+++.++. +....+|+.++|.+.+.+.             +..|+...|.+.+++++++.+..+ +.|
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~-------------~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-------------ESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH-------------HHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-------------HhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7889999999999999995 7788899999999999887             456788888888888888777655 566


Q ss_pred             cCCCC
Q 036040          309 EPNGR  313 (338)
Q Consensus       309 e~~~~  313 (338)
                      |+++.
T Consensus       402 ~~~~~  406 (417)
T 2cfq_A          402 GPGPL  406 (417)
T ss_dssp             CSCTT
T ss_pred             CCCch
Confidence            65443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.61  E-value=1.1e-15  Score=138.29  Aligned_cols=171  Identities=15%  Similarity=0.077  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH------ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-h
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA------VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-I  174 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~  174 (338)
                      .+...+..++....+|+...+.+.++++      +|+++.+            .........++..++.+++|+++|| +
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~~   82 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------------AASIMAIYASMVYLSGTIGGFVADRII   82 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445556666777788888888888776      5665543            4557777888889999999999999 8


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc--hhhhHHHHHHH
Q 036040          175 GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF--RSTCHGISAAA  252 (338)
Q Consensus       175 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~  252 (338)
                      |||+++..+.++.+++.++..+..       + ...+.+..++.+.+.....+...++++|.+|++.  |+.+.++.+..
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  154 (491)
T 4aps_A           83 GARPAVFWGGVLIMLGHIVLALPF-------G-ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG  154 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCC-------S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhh-------h-HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence            999999999888888877776543       2 3334444445555555556777889999999988  77788888899


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      ..+|..++|.+.+.+.             +..||+..|++.++..+++.+..+
T Consensus       155 ~~~g~~~~~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          155 INLGAFIAPLIVGAAQ-------------EAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHH-------------HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987             567999999988777766666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.58  E-value=1.7e-15  Score=132.27  Aligned_cols=176  Identities=7%  Similarity=-0.055  Sum_probs=135.0

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF  184 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  184 (338)
                      ..+..+.............|.+.+++|.++.+            .........++..++.++.|+++||+|||+.++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   72 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGA------------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM   72 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            33444455555555666778887887877754            444677778888899999999999999999999998


Q ss_pred             HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040          185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF  264 (338)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~  264 (338)
                      ++.+++.++..+...        ...+....++.+.+.....+....++.|.+|++.|++++++.+....+|..++|.+.
T Consensus        73 ~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  144 (375)
T 2gfp_A           73 SIFMLATLVAVTTSS--------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG  144 (375)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888777766542        333444445555555555667778899999999999999999999999999999999


Q ss_pred             HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040          265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR  313 (338)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~  313 (338)
                      +.+.             +..+|+..|.+.++..++..+... ++||++..
T Consensus       145 ~~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          145 GLLD-------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHSS-------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHH-------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            9986             567999999988888877777555 77876543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.54  E-value=4.3e-14  Score=127.84  Aligned_cols=178  Identities=11%  Similarity=-0.021  Sum_probs=108.5

Q ss_pred             HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-----H
Q 036040          109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-----I  182 (338)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~  182 (338)
                      .+.....+.....+.|.+.++ .+.+....+            .......++.+++.++.+++.||+|||+...     .
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~  359 (491)
T 4aps_A          292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVS------------WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV  359 (491)
T ss_dssp             HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG------------GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhccCccCHH------------HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence            334444555566677777776 344432211            1444556666677888999999999986544     4


Q ss_pred             HHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040          183 GFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      +.++++++.+++........ .............++.+.+.....+..+.++.|.+|++.|++++|+.+....+|..+++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~  439 (491)
T 4aps_A          360 GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA  439 (491)
T ss_dssp             HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444444444433221111 11122333333444444444455667788999999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG  312 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  312 (338)
                      .+.+.+.              ..++...|.+.+++++++.+..+ +.++.++
T Consensus       440 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          440 QLVTLYN--------------AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHGGGGG--------------GSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHh--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998885              33556677777777777666655 5555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.52  E-value=6e-13  Score=120.30  Aligned_cols=158  Identities=17%  Similarity=0.071  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc----------ccchhhHHHHHHHHH
Q 036040          149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ----------KHNSTGFVVMYALTF  218 (338)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  218 (338)
                      ..+..+...++.++|++++|+++||+|||+.++++.++..++.++.++.......          .......+++..++.
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~  136 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG  136 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence            3456667788899999999999999999999999999888888877753311100          113355566677777


Q ss_pred             HhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHH
Q 036040          219 FFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNV  298 (338)
Q Consensus       219 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (338)
                      +++.++..+...++++|..|++.|+...++.+.....|..+++.+........+     .......+|+..+.+..+..+
T Consensus       137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD-----ASWLNTDGWRYMFASECIPAL  211 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTTTTTTHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc-----cccccchhhHHHhhhhhhhhh
Confidence            777777778888999999999999999999998888888888877766643111     111134567877777777777


Q ss_pred             HhHhheeecccCC
Q 036040          299 LGLLFTFLVPEPN  311 (338)
Q Consensus       299 ~~~~~~~~~~e~~  311 (338)
                      +..+..+++||+.
T Consensus       212 ~~~~~~~~~peSp  224 (491)
T 4gc0_A          212 LFLMLLYTVPESP  224 (491)
T ss_dssp             HHHHHGGGSCCCH
T ss_pred             hhhhhhhcCCCCh
Confidence            7766666889873

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.51  E-value=1.1e-13  Score=126.22  Aligned_cols=169  Identities=11%  Similarity=-0.006  Sum_probs=127.4

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-cc------CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-ch
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VG------WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GR  176 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr  176 (338)
                      ..+..++....+|+...+++.++.+ +|      +++.+            .........++.+++.+++|+++||+ ||
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~   84 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------------AKDVFHSFVIGVYFFPLLGGWIADRFFGK   84 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------------HHHHHHHHHHHHHHTHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445556666777777888887765 67      66655            44466777888888999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHH---HHHHH
Q 036040          177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGI---SAAAG  253 (338)
Q Consensus       177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~  253 (338)
                      |+++.++.++.+++.++..+..       .....+.+..++.+.+.....+...++++|.+|++.|+++.+.   .+...
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  157 (524)
T 2xut_A           85 YNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI  157 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence            9999999888877777666543       0233444445555555566667788899999999999876666   88889


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      .+|..++|.+.+.+.             +..+|+..|++.+++.+++.+..+
T Consensus       158 ~~g~~~g~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          158 NFGSFFASLSMPLLL-------------KNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHTSTHHH-------------HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887             467899999888877766655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.33  E-value=4.2e-14  Score=123.42  Aligned_cols=159  Identities=11%  Similarity=-0.013  Sum_probs=91.8

Q ss_pred             HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH-H
Q 036040          110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF-M  187 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~  187 (338)
                      ++.....+....+.|.++++ .|+++.            ..........++.+++.++.+++.||++++.  ..+... .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~  274 (375)
T 2gfp_A          209 IGGLAGIAAFEACSGVLMGAVLGLSSM------------TVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCL  274 (375)
T ss_dssp             HHHHHHHHHHHHHCSCSSHHHHHHHHH------------HHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            33444455555555555444 343332            2445666677888888888999999988732  222221 1


Q ss_pred             HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040          188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA  267 (338)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~  267 (338)
                      ..+...+.....    ............++.+++.....+....+..|.+| +.|+++.|+.+....+|..++|.+.+.+
T Consensus       275 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          275 LAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111011100    00112222222333333334445667788899998 8999999999999999999999999888


Q ss_pred             hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040          268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL  301 (338)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (338)
                      .             +..++...+.+. ++.+++.
T Consensus       350 ~-------------~~~~~~~~~~~~-~~~~~~~  369 (375)
T 2gfp_A          350 P-------------QTGQGSLGLLMT-LMGLLIV  369 (375)
T ss_dssp             H-------------HHHHHHHHHHHH-HHHHHHH
T ss_pred             h-------------cCCcccHHHHHH-HHHHHHH
Confidence            6             455666666543 3333333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.07  E-value=1e-10  Score=106.59  Aligned_cols=133  Identities=8%  Similarity=0.007  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG  256 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g  256 (338)
                      +.+.++.++.+++.+++........ ........++...++.+++.....+..+.++.|..|++.|++++|+.++...+|
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  453 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG  453 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence            4455555555555444433211000 001122233333344444444445667788999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCC--Ccch-HHHHHHHHHHHHHhHhhee-ecccCCCCCh
Q 036040          257 AIIGAFGFLYAAQDQDKSKADPGYPA--GIGI-KNTLFLLAAVNVLGLLFTF-LVPEPNGRSL  315 (338)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~  315 (338)
                      +.+++.+.+.+.+....     ++..  ..+. ...|++.+++++++.++.+ +.++.++++.
T Consensus       454 ~~~g~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (524)
T 2xut_A          454 NLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDH  511 (524)
T ss_dssp             HHHHHHHHHHTTSCHHH-----HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHhcccccc-----cccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            99999999988620000     0000  0111 2336666777676666555 5566655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.95  E-value=5.4e-11  Score=105.25  Aligned_cols=166  Identities=10%  Similarity=-0.130  Sum_probs=95.7

Q ss_pred             HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040          110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT  188 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  188 (338)
                      +.....+.....+.|.++++ .|+++.+            .........++.+++.+++|+++||+|||++++++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSD------------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTT------------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33444455556788888876 7888776            3346777788888999999999999999999988766554


Q ss_pred             HHHHHH---HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc--cchhhhHHHHHHHHHHHHHHHHHH
Q 036040          189 VFMLAL---AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA--RFRSTCHGISAAAGKAGAIIGAFG  263 (338)
Q Consensus       189 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~  263 (338)
                      +.....   .+.....      .... ......+.......+.......+..++  +.|+.+.|.....+.+|..++|.+
T Consensus        85 ~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l  157 (417)
T 2cfq_A           85 VMFAPFFIFIFGPLLQ------YNIL-VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI  157 (417)
T ss_dssp             SCHHHHHHHTHHHHHH------TTCC-HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence            322111   1111000      0000 111111110000001111122333332  345667777777788899999999


Q ss_pred             HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040          264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP  308 (338)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (338)
                      .+.+.             + .+|+..|++.++..++..+..++.+
T Consensus       158 ~~~l~-------------~-~~~~~~f~~~~~~~~~~~~~~~~~~  188 (417)
T 2cfq_A          158 VGIMF-------------T-INNQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             HHHHH-------------H-HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred             HHHHH-------------H-hchhHHHHHHHHHHHHHHHHHHHcC
Confidence            98886             2 4678888766655544444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.71
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.7
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.15

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.7e-17  Score=145.89  Aligned_cols=176  Identities=14%  Similarity=0.164  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040          102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ  180 (338)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~  180 (338)
                      .+......++.....++...+.|.++.+ .+++..            ..........++.+++.+++|++.||++||+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHhhhhhhhhhcchhhhhhhcccccccccc------------hhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            3444445555566667777788887665 233332            244566777788889999999999999987655


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHH
Q 036040          181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAII  259 (338)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~  259 (338)
                      ........+.........  .... .......+..+..++...+..+..+.+..|.+|++.|+++.|+.+..+++ |.++
T Consensus       319 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~  395 (447)
T d1pw4a_         319 ATGVFFMTLVTIATIVYW--MNPA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  395 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTT--SCCT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHH--hccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333333322222211  1111 22223333333344444455566777889999999999999999988887 5567


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040          260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF  305 (338)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (338)
                      +|.+.+.+.             +..|++..|++.+++++++.++.+
T Consensus       396 ~~~~~g~~~-------------~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         396 ASAIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHH-------------HSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------------HHhChHHHHHHHHHHHHHHHHHHH
Confidence            888999887             577899888888887777777666

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.5e-17  Score=143.87  Aligned_cols=184  Identities=12%  Similarity=0.003  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040           98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV  177 (338)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr  177 (338)
                      +|..++..++.++........+....|. +++.|+++.+            .++......++..++.+++|+++||+|||
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r   89 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQGFSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNPR   89 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSSTTCSSC------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            3444555555555555544555555664 4567888877            34467778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040          178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA  257 (338)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~  257 (338)
                      +++.++.++.+++.++.++.....    +.....++..++.+.+.....+....++.|.+|++.|++++|+.+....+|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  165 (447)
T d1pw4a_          90 VFLPAGLILAAAVMLFMGFVPWAT----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  165 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHH----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchhh----hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence            999999998888888777654221    2233444455555555555556677889999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040          258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP  310 (338)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  310 (338)
                      .+++.+.+....            ...+|+..+++.+++.++..++.+ +++++
T Consensus       166 ~i~~~~~~~~~~------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         166 GIPPLLFLLGMA------------WFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             TSHHHHHHHHHH------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhhhhhhhHhh------------hhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            999988887663            345788888877777766666555 44443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=4.7e-15  Score=128.05  Aligned_cols=147  Identities=16%  Similarity=0.065  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040          148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS  227 (338)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                      ..........++..++..+.+++.||.|||+.+..+.++.+++.+++.+..       + ........++.++......+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------S-ALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc-------c-cchhhHHHHHHHHHHHHHHH
Confidence            344556666777888889999999999999999999888877777666544       2 22333333333433444456


Q ss_pred             eeeeeecccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-
Q 036040          228 TTFIVPAEIFPARFRSTCHGISA-AAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-  305 (338)
Q Consensus       228 ~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  305 (338)
                      ...++++|.+|++.|+++.|+.. ....+|..++|.+.+.+.             +..|++..+++.+++.++..++.. 
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-------------ESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-------------HHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            67788999999999999999865 456689999999999998             578999999988888877777666 


Q ss_pred             ecccCCCCCh
Q 036040          306 LVPEPNGRSL  315 (338)
Q Consensus       306 ~~~e~~~~~~  315 (338)
                      .+++++..+.
T Consensus       399 ~l~~~~~~~~  408 (417)
T d1pv7a_         399 TLSGPGPLSL  408 (417)
T ss_dssp             HSCCSSCTTH
T ss_pred             hhcCCCccch
Confidence            5555554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3.2e-11  Score=103.46  Aligned_cols=178  Identities=10%  Similarity=-0.144  Sum_probs=100.2

Q ss_pred             HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040          105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG  183 (338)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~  183 (338)
                      ..+..+...........+.|.++++ .|+++.+            .+.......++..++.+++|+++||+|||+.++++
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            4444444444455556677777665 6887765            44577778888899999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC--ccchhhhHHHHHHHHHHHHHHHH
Q 036040          184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP--ARFRSTCHGISAAAGKAGAIIGA  261 (338)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~g~~~~~  261 (338)
                      ..+..++..+........    .............+...............+..+  .+.+....+........+..+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGP----LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHH----HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccc
Confidence            777777666665543211    001111111111111111111111111111222  22344566677777788888899


Q ss_pred             HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh-eeecccCCC
Q 036040          262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF-TFLVPEPNG  312 (338)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~  312 (338)
                      .+.+.+.              ..++...+........+..+. .+..+|+..
T Consensus       156 ~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         156 SIVGIMF--------------TINNQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHH--------------HHCHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             ccccccc--------------cccccccccchhhHHHHHHHHHHHHhccccc
Confidence            8888886              234444444444444443333 335555443