Citrus Sinensis ID: 036058

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRAA
Secondary Structure (PSIPRED)
cccccEEEEEEccccccEEEEEEccccccHHHHHHEEEcccEEEEEEEcccccEEEEcccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFspagklilfDGKKRLDEILMHFidlphhqraa
Flexible Loop (DISEMBL)
mgrvrlqikkienrtyrhitfakrksglvkkAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFidlphhqraa
Low Complexity Region (SEG)
MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRAA
Disordered region (IsUnstruct)
******QIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL*******
Disordered Region (DISOPRED)
***VRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMH***********
Disordered Region (DISEMBL)
MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRAA
Disordered Region (DISPRO)
*****LQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHH****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRAA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q6Q9I2	267	MADS-box transcription fa	no	no	0.987	0.295	0.493	6e-16
Q40170	227	Agamous-like MADS-box pro	N/A	no	0.875	0.308	0.528	1e-15
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.875	0.300	0.528	1e-15
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.712	0.236	0.649	2e-15
P29386	252	Agamous-like MADS-box pro	no	no	0.712	0.226	0.631	2e-15
Q38876	242	Agamous-like MADS-box pro	no	no	0.875	0.289	0.542	2e-15
O22456	251	Developmental protein SEP	no	no	0.712	0.227	0.649	3e-15
Q41274	241	Agamous-like MADS-box pro	N/A	no	0.875	0.290	0.542	3e-15
Q7XUN2	249	MADS-box transcription fa	no	no	0.712	0.228	0.631	4e-15
O04067	254	Agamous-like MADS-box pro	N/A	no	0.712	0.224	0.649	4e-15

>sp|Q6Q9I2|MAD15_ORYSJ MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 58/79 (73%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR ++Q+K+IEN+  R +TF+KR++GL+KKA+EIS LCD EVA I+FSP GKL  +   
Sbjct: 1  MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATD 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
           R+D+IL  +    + ++A
Sbjct: 61 SRMDKILERYERYSYAEKA 79

Probable transcription factor.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 51/70 (72%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR R+Q+K+IEN+  R +TF+KR+SGL+KKA+EIS LCD EV LI+FS  GKL  +   
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60

Query: 61 KRLDEILMHF 70
            ++ IL  +
Sbjct: 61 SCMERILERY 70

Probable transcription factor.

Solanum lycopersicum (taxid: 4081)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALI+FS  GKL  F   
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61 KRLDEILMHF 70
            +++ L  +
Sbjct: 61 SCMNKTLERY 70

Dianthus caryophyllus (taxid: 3570)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALIIFS  GKL  F
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 57

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          MGR R+++K+IEN+  R +TF+KR++GL+KKAYE+S LCD EVALIIFS  GKL  F
Sbjct: 1  MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 52/70 (74%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR R+Q+K+IEN+  R +TF+KR+SGL+KKA+EIS LCD EVALI+FS  GKL  +   
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61 KRLDEILMHF 70
            ++ IL  +
Sbjct: 61 SCMERILERY 70

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique. Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND.

Arabidopsis thaliana (taxid: 3702)

>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALIIFS  GKL  F
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 57

Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41274|AGL8_SINAL Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR R+Q+K+IEN+  R +TF+KR+SGL+KKA+EIS LCD EVAL+IFS  GKL  +   
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTD 60

Query: 61 KRLDEILMHF 70
            +++IL  +
Sbjct: 61 SCMEKILERY 70

Probable transcription factor.

Sinapis alba (taxid: 3728)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          MGR R+++K+IEN+  R +TF+KR++GL+KKAYE+S LCD EVALIIFS  GKL  F
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALIIFS  GKL  F
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 57

Probable transcription factor active in inflorescence development and floral organogenesis.

Sinapis alba (taxid: 3728)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
255538136	230	mads box protein, putative [Ricinus comm	0.987	0.343	0.632	8e-25
147783772	323	hypothetical protein VITISV_040997 [Viti	1.0	0.247	0.625	1e-24
225458762	322	PREDICTED: MADS-box transcription factor	0.987	0.245	0.607	3e-24
316890784	217	MADS-box protein Md subfamily [Coffea ar	0.987	0.364	0.607	5e-24
147782530	311	hypothetical protein VITISV_012132 [Viti	0.987	0.254	0.607	5e-24
343160545	348	AGL66 protein [Eschscholzia californica]	1.0	0.229	0.587	1e-23
449457351	224	PREDICTED: MADS-box transcription factor	1.0	0.357	0.562	2e-23
343160415	335	MADS2 protein [Aristolochia fimbriata]	0.975	0.232	0.602	2e-23
269314023	245	MADS-box transcription factor 1 [Hevea b	0.987	0.322	0.607	5e-23
413952618	364	putative MADS-box transcription factor f	0.975	0.214	0.551	9e-23

>gi|255538136|ref|XP_002510133.1| mads box protein, putative [Ricinus communis] gi|223550834|gb|EEF52320.1| mads box protein, putative [Ricinus communis]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 68/79 (86%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIK+IEN T R +TF+KR++GL+KKAYE+S LCDV+VALI+FSP+G+L LF G 
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGI 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
          K ++EILM +++LP H+R 
Sbjct: 61 KSIEEILMRYVNLPEHERG 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783772|emb|CAN76977.1| hypothetical protein VITISV_040997 [Vitis vinifera]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 65/80 (81%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR R++IKKIEN+  R +TFAKR++GL+KKAYEISTLCD+EVAL+ FSP+GK  +F GK
Sbjct: 1  MGRQRVEIKKIENKAVRQVTFAKRRNGLLKKAYEISTLCDIEVALLAFSPSGKPTIFGGK 60

Query: 61 KRLDEILMHFIDLPHHQRAA 80
          KR D+I  H+I+LP +Q   
Sbjct: 61 KRFDQIFAHYINLPEYQEGG 80

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458762|ref|XP_002285097.1| PREDICTED: MADS-box transcription factor 3 [Vitis vinifera] gi|302142239|emb|CBI19442.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 67/79 (84%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIKKIEN T R +TF+KR++GL+KKAYE+S LCDV+VALI+FSP+G++ LF G 
Sbjct: 1  MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
          K ++EI+  +++LP H+R 
Sbjct: 61 KSIEEIMTRYVNLPEHERG 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316890784|gb|ADU56838.1| MADS-box protein Md subfamily [Coffea arabica]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 67/79 (84%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIKKIE+ T R +TF+KR++GL+KKAYE+S LCDV+VALI+FSP+G+L +F G 
Sbjct: 1  MGRVKLQIKKIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSVFSGN 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
          K L+EI+  +++LP H+R 
Sbjct: 61 KSLEEIMARYLNLPEHERG 79

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782530|emb|CAN68428.1| hypothetical protein VITISV_012132 [Vitis vinifera]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 66/79 (83%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIKKIEN T R +TF+KR++GL+KKAYE+S LCDV+VALI+FSP+G+  LF G 
Sbjct: 1  MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRXSLFSGN 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
          K ++EI+  +++LP H+R 
Sbjct: 61 KSIEEIMTRYVNLPEHERG 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160545|emb|CAX16992.1| AGL66 protein [Eschscholzia californica]

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 67/80 (83%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIKKIEN T R +TF+KR++GL+KKAYE+S LCD+++ALI+FSP+G+L  F GK
Sbjct: 1  MGRVKLQIKKIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGK 60

Query: 61 KRLDEILMHFIDLPHHQRAA 80
          +R++++L  +I+LP H R  
Sbjct: 61 RRIEDVLTRYINLPEHDRGG 80

Source: Eschscholzia californica

Species: Eschscholzia californica

Genus: Eschscholzia

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457351|ref|XP_004146412.1| PREDICTED: MADS-box transcription factor 18-like [Cucumis sativus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 68/80 (85%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIK+IEN T R +TF+KR++GL+KKAYE+S LCD+++ALI+FSP+G+L  F G+
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGR 60

Query: 61 KRLDEILMHFIDLPHHQRAA 80
          +R++++L  +I+LP H R +
Sbjct: 61 RRIEDVLARYINLPDHDRGS 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160415|emb|CBJ21246.1| MADS2 protein [Aristolochia fimbriata]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 65/78 (83%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIK+IEN T R +TF+KR++GL+KKAYE+  LCD+++ALI+FSP+G+L  F GK
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELCILCDIDIALIMFSPSGRLSHFSGK 60

Query: 61 KRLDEILMHFIDLPHHQR 78
          KR++++L  FI LP H R
Sbjct: 61 KRIEDVLTRFISLPDHDR 78

Source: Aristolochia fimbriata

Species: Aristolochia fimbriata

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269314023|gb|ACZ36914.1| MADS-box transcription factor 1 [Hevea brasiliensis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 67/79 (84%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIK+IEN T R +T++KR++GL+KKAYE+S LCDV+VALI+FSP+G+L LF G 
Sbjct: 1  MGRVKLQIKRIENTTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGN 60

Query: 61 KRLDEILMHFIDLPHHQRA 79
          K ++EIL  +++LP H+R 
Sbjct: 61 KSIEEILTRYVNLPEHERG 79

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952618|gb|AFW85267.1| putative MADS-box transcription factor family protein [Zea mays]

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 67/78 (85%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGRV+LQIK+IEN T R +TF+KR++GL+KKAYE+S LCD+++ALI+FSP+ +L  F G+
Sbjct: 1  MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGR 60

Query: 61 KRLDEILMHFIDLPHHQR 78
          +R+++++  +I+LP H+R
Sbjct: 61 RRIEDVITRYINLPEHER 78

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.975	0.232	0.564	7e-22
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.975	0.309	0.551	2.4e-21
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.975	0.234	0.525	1.7e-20
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.987	0.295	0.493	1.8e-16
TAIR|locus:2102871	249	AGL79 "AGAMOUS-like 79" [Arabi	0.837	0.269	0.567	4.7e-16
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.875	0.289	0.542	1.3e-15
UNIPROTKB|D2T2G0	238	gsqua2 "GSQUA2 protein" [Gerbe	0.875	0.294	0.528	1.6e-15
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.875	0.283	0.542	2.6e-15
UNIPROTKB|Q0J466	249	MADS7 "MADS-box transcription	0.837	0.269	0.567	3.3e-15
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.875	0.284	0.557	3.3e-15

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 44/78 (56%), Positives = 65/78 (83%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGRV+L+IK+IEN T R +TF+KR++GL+KKAYE+S LCD+++ALI+FSP+ +L LF GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query:    61 KRLDEILMHFIDLPHHQR 78
              R++++   FI+LP  +R
Sbjct:    61 TRIEDVFSRFINLPKQER 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 43/78 (55%), Positives = 65/78 (83%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGRV+L++K+IE  T R ITF+KRK GL+KKAYE+STLCD+++AL++FSP+ +L LF G+
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    61 KRLDEILMHFIDLPHHQR 78
              R++++L  +I+LP  +R
Sbjct:    61 TRIEDVLARYINLPDQER 78

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 41/78 (52%), Positives = 64/78 (82%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGRV+L+IK+IEN T R +TF+KR++GL+KKAYE+S LCD+++AL++FSP+ +L LF GK
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query:    61 KRLDEILMHFIDLPHHQR 78
              R++++   +I+L   +R
Sbjct:    61 TRIEDVFSRYINLSDQER 78

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/79 (49%), Positives = 58/79 (73%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR ++Q+K+IEN+  R +TF+KR++GL+KKA+EIS LCD EVA I+FSP GKL  +   
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATD 60

Query:    61 KRLDEILMHFIDLPHHQRA 79
              R+D+IL  +    + ++A
Sbjct:    61 SRMDKILERYERYSYAEKA 79

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2102871 AGL79 "AGAMOUS-like 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 38/67 (56%), Positives = 51/67 (76%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR R+Q+++IEN+  R +TF+KR++GLVKKA EIS LCD EVALI+FSP GKL  +   
Sbjct:     1 MGRGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKGKLFEYSAG 60

Query:    61 KRLDEIL 67
               ++ IL
Sbjct:    61 SSMERIL 67

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/70 (54%), Positives = 52/70 (74%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR R+Q+K+IEN+  R +TF+KR+SGL+KKA+EIS LCD EVALI+FS  GKL  +   
Sbjct:     1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query:    61 KRLDEILMHF 70
               ++ IL  +
Sbjct:    61 SCMERILERY 70

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

UNIPROTKB|D2T2G0 gsqua2 "GSQUA2 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR R+Q+K+IEN+  R +TF+KR++GL+KKA+EIS LCD +VALI+FS  GKL  +   
Sbjct:     1 MGRGRVQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTH 60

Query:    61 KRLDEILMHF 70
               +D IL  +
Sbjct:    61 SSMDAILERY 70

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/70 (54%), Positives = 52/70 (74%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALIIFS  GKL  F   
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    61 KRLDEILMHF 70
               + ++L  +
Sbjct:    61 SNMLKMLERY 70

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J466 MADS7 "MADS-box transcription factor 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/67 (56%), Positives = 51/67 (76%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR R+++K+IEN+  R +TFAKR++GL+KKAYE+S LCD EVALIIFS  GKL  F   
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query:    61 KRLDEIL 67
             + + + L
Sbjct:    61 QSMTKTL 67

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query:     1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
             MGR ++Q+K+IEN+  R +TF+KR+SGL+KKA EIS LCD EVALIIFS  GKL  +   
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    61 KRLDEILMHF 70
               +D+IL  +
Sbjct:    61 SCMDKILERY 70

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
smart00432	59	smart00432, MADS, MADS domain	6e-26
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	9e-26
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-23
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-21
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	7e-19
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	2e-11

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 89.9 bits (224), Expect = 6e-26
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          GR +++IK+IEN+T R +TF+KR++GL KKA+E+S LCD EVALI+FSP GKL  F
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEF 56

Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 89.9 bits (224), Expect = 9e-26
 Identities = 34/53 (64%), Positives = 46/53 (86%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKL 54
          GR +++IK+IEN T R +TF+KR++GL+KKA+E+S LCD EVALIIFS +GKL
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKL 53

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 84.1 bits (209), Expect = 1e-23
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          GR +++IK+IEN+T R +TF+KR++GL KKA E+S LCD EVA+I+FSP+GKL  F
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEF 56

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 78.8 bits (195), Expect = 3e-21
 Identities = 32/56 (57%), Positives = 46/56 (82%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
          GR +++IK+IEN+  R +TF+KR+ GL KKA E+STLC  EVA+I++SP+GKL +F
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVF 56

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 72.0 bits (177), Expect = 7e-19
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query: 9  KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKL 54
          K+IEN++ R +TF+KR++G+ KKA+E+S LCD EVA+IIFS  GKL
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKL 46

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 1   MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
           +   ++ I  I N+T R +TF+KRK G+ KKA+E+S L   EV L++ S  G +  F
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTF 137

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.98
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.82
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.52
PF09151	36	DUF1936: Domain of unknown function (DUF1936); Int	87.53

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.98  E-value=1.4e-33  Score=192.12  Aligned_cols=77  Identities=47%  Similarity=0.856  Sum_probs=70.9

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC-CCHHHHHHHhcCCCccc
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK-KRLDEILMHFIDLPHHQ   77 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~-~~~~~il~~y~~~~~~~   77 (80)
                      |||+||+|++|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|.|+++ .++++++++|.+.++..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~   78 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS   78 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999877554 34999999998766554

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=4e-33  Score=169.90  Aligned_cols=74  Identities=49%  Similarity=0.807  Sum_probs=69.8

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCCCcc
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHH   76 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~~   76 (80)
                      ||+||+|++|+|+.+|++||+||+.||||||.|||+||||+||+|||+|+|+++.|++ +++++|+++|++.+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcccc
Confidence            8999999999999999999999999999999999999999999999999999999966 5689999999977654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2.4e-32  Score=168.42  Aligned_cols=78  Identities=45%  Similarity=0.766  Sum_probs=72.0

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCCCccccc
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRA   79 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~~~r~   79 (80)
                      ||+||+|++|+|+.+|++||+||+.||+|||+|||+||||+||+|||+|+|+++.|+++.++++++++|..+++.++.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK   78 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence            899999999999999999999999999999999999999999999999999877775544499999999999887765

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.7e-29  Score=147.57  Aligned_cols=58  Identities=60%  Similarity=1.000  Sum_probs=56.1

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG   59 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s   59 (80)
                      ||+||+|++|+|++.|++||+||+.||+|||+|||+||||+||+|||+|+|++++|++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999988854

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=3.5e-29  Score=146.21  Aligned_cols=58  Identities=59%  Similarity=0.954  Sum_probs=56.3

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG   59 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s   59 (80)
                      ||+||+|++|+|+..|++||+||+.||+|||+|||+|||++||+|||+|+|.+++|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999998865

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=6.1e-28  Score=137.47  Aligned_cols=51  Identities=63%  Similarity=0.994  Sum_probs=46.8

Q ss_pred             EEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058            9 KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG   59 (80)
Q Consensus         9 k~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s   59 (80)
                      ++|+|+..|++||+||+.||+|||+|||+||||+||+|||+|+|++++|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            579999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.82  E-value=1.1e-20  Score=139.08  Aligned_cols=76  Identities=36%  Similarity=0.625  Sum_probs=67.5

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC--------CCHHHHHHHhcCC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK--------KRLDEILMHFIDL   73 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~--------~~~~~il~~y~~~   73 (80)
                      ||+||+|+||+|+..|.+||+|||.||||||+|||+|+|.+|.|+|.+++|-+|+|..+        +.-+++|+..+|-
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999654        1236778888876


Q ss_pred             Cccc
Q 036058           74 PHHQ   77 (80)
Q Consensus        74 ~~~~   77 (80)
                      |+..
T Consensus       143 pd~~  146 (338)
T KOG0015|consen  143 PDTP  146 (338)
T ss_pred             CCCC
Confidence            6543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.52  E-value=6.2e-15  Score=111.90  Aligned_cols=60  Identities=38%  Similarity=0.575  Sum_probs=57.5

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK   60 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~   60 (80)
                      ||+++|.|.+|+|+.+|.+||.||+.||+|||.||++|+|.+|.++|.+.+|..++|..+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp  140 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP  140 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence            789999999999999999999999999999999999999999999999999999999543

>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins

Probab=87.53  E-value=1  Score=23.33  Aligned_cols=28  Identities=18%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             hhhccCcceeEEEecCCCceEEe-cCCCC
Q 036058           35 ISTLCDVEVALIIFSPAGKLILF-DGKKR   62 (80)
Q Consensus        35 Ls~Lc~~~v~liv~~~~~~~~~~-~s~~~   62 (80)
                      |+--||+-|.+.||+..|..-+| .|++.
T Consensus         3 lcpkcgvgvl~pvy~~kgeikvfrcsnpa   31 (36)
T PF09151_consen    3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPA   31 (36)
T ss_dssp             B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred             cCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence            56679999999999999976666 35554

Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-14
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		7e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-13
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		4e-13
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		7e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		2e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		2e-09

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
          MGR ++QI +I ++  R +TF KRK GL+KKAYE+S LCD E+ALIIF+ A +L  +   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AS 59
Query: 61 KRLDEILMHFIDL--PHHQRA 79
            +D +L+ + +   PH  R 
Sbjct: 60 TDMDRVLLKYTEYSEPHESRT 80

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL  +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
           +D++L+ + +   PH  R 
Sbjct: 60 DMDKVLLKYTEYNEPHESRT 79

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I ++  R +TF KRK GL+KKAYE+S LCD E+ALIIF+ A +L  +    
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
           +D +L+ + +   PH  R 
Sbjct: 60 DMDRVLLKYTEYSEPHESRT 79

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL  +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHH 76
           +D++L+ + +   PH 
Sbjct: 60 DMDKVLLKYTEYNEPHE 76

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I +   R +TF KRK GL+KKAYE+S L D E+ALIIF+ + KL  +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
           +D++L+ + +   PH  R 
Sbjct: 60 DMDKVLLKYTEYNEPHESRT 79

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL  +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHF 70
           +D++L+ +
Sbjct: 60 DMDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 3  RVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          R +++IK IEN+T RH+TF+KRK G++KKA+E+S L   +V L++ S  G +  F   K
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GRV+++++ I+N+  R+ TF+KRK+G++KKAYE+STL   +V L++ S  G +  F  +K
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GRV+++++ I+N+  R+ TF+KRK+G++KKAYE+STL   +V L++ S  G +  F  +K
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	6e-30
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-29
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	8e-29
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-27
1egw_A	77	MADS box transcription enhancer factor 2, polypept	4e-26

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  100 bits (251), Expect = 6e-30
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
           GRV+++++ I+N+  R+ TF+KRK+G++KKAYE+STL   +V L++ S  G +  F   
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF-AT 67

Query: 61 KRLDEILMHFIDLPHHQRA 79
          ++L  ++         Q  
Sbjct: 68 RKLQPMITSETGKALIQTC 86

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 99.5 bits (248), Expect = 2e-29
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
           GRV+++++ I+N+  R+ TF+KRK+G++KKAYE+STL   +V L++ S  G +  F   
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF-AT 68

Query: 61 KRLDEILMHFIDLPHHQRA 79
          ++L  ++         Q  
Sbjct: 69 RKLQPMITSETGKALIQTC 87

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 98.0 bits (244), Expect = 8e-29
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57
            R +++IK IEN+T RH+TF+KRK G++KKA+E+S L   +V L++ S  G +  F
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 93.3 bits (232), Expect = 4e-27
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKL 54
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKL 53

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 90.1 bits (224), Expect = 4e-26
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKL 54
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKL 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.98
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=6.9e-37  Score=190.78  Aligned_cols=73  Identities=44%  Similarity=0.826  Sum_probs=69.4

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCCCc
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPH   75 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~   75 (80)
                      ||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||||+|++|+|+| +++++||++|++.++
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCc
Confidence            8999999999999999999999999999999999999999999999999999999977 679999999985443

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.7e-36  Score=184.32  Aligned_cols=71  Identities=45%  Similarity=0.852  Sum_probs=67.9

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL   73 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~   73 (80)
                      ||+||+|++|+|+.+|++||+||++||+|||+|||+||||+||||||+++|++|.|++ +++++|+++|+..
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~   71 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEY   71 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999976 5799999999743

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=7.3e-35  Score=184.53  Aligned_cols=70  Identities=39%  Similarity=0.634  Sum_probs=66.9

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFI   71 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~   71 (80)
                      |||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|.|++ +++++|+++|.
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~   85 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQE   85 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999999966 47889999884

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.98  E-value=8.1e-35  Score=182.03  Aligned_cols=69  Identities=38%  Similarity=0.651  Sum_probs=65.2

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHh
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHF   70 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y   70 (80)
                      |||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|++ +++++++++|
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~   78 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSE   78 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999966 5688887765

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=3.6e-34  Score=182.18  Aligned_cols=68  Identities=38%  Similarity=0.680  Sum_probs=64.1

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHH
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMH   69 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~   69 (80)
                      |||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+++|++|.|++ ++++++|++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~   76 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITS   76 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSS
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999965 467777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	5e-24
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-23
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-23

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (208), Expect = 5e-24
 Identities = 26/67 (38%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 1  MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
           GRV+++++ I+N+  R+ TF+KRK+G++KKAYE+STL   +V L++ S  G +  F   
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF-AT 60

Query: 61 KRLDEIL 67
          ++L  ++
Sbjct: 61 RKLQPMI 67

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (207), Expect = 1e-23
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
           R +++IK IEN+T RH+TF+KRK G++KKA+E+S L   +V L++ S  G +  F    
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF-STP 61

Query: 62 RLDEILMHF 70
          + + I+   
Sbjct: 62 KFEPIVTQQ 70

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (205), Expect = 1e-23
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 2  GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
          GR ++QI +I +   R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL  +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59

Query: 62 RLDEILMHF 70
           +D++L+ +
Sbjct: 60 DMDKVLLKY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1pvma3	36	Hypothetical protein Ta0289 C-terminal domain {Arc	84.4

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=183.14  Aligned_cols=70  Identities=46%  Similarity=0.864  Sum_probs=67.5

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFID   72 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~   72 (80)
                      ||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++++|++ +++++|+++|+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999977 679999999963

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-35  Score=178.93  Aligned_cols=71  Identities=38%  Similarity=0.622  Sum_probs=67.5

Q ss_pred             CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCC
Q 036058            2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL   73 (80)
Q Consensus         2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~   73 (80)
                      ||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||||+|++|+|.+ |++++|+++|+..
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s-p~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC-CCHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999999999999999954 7799999999743

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=178.55  Aligned_cols=70  Identities=37%  Similarity=0.639  Sum_probs=67.1

Q ss_pred             CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058            1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFI   71 (80)
Q Consensus         1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~   71 (80)
                      +||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|+|++ +++++++++|.
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s-~~~~~vi~~~~   71 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET   71 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC-GGGHHHHSSHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999955 67999999986

>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Hypothetical protein Ta0289 C-terminal domain
family: Hypothetical protein Ta0289 C-terminal domain
domain: Hypothetical protein Ta0289 C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.40  E-value=0.58  Score=22.30  Aligned_cols=27  Identities=19%  Similarity=0.431  Sum_probs=21.4

Q ss_pred             hhhccCcceeEEEecCCCceEEe-cCCC
Q 036058           35 ISTLCDVEVALIIFSPAGKLILF-DGKK   61 (80)
Q Consensus        35 Ls~Lc~~~v~liv~~~~~~~~~~-~s~~   61 (80)
                      |+--||+-|.+.||+..|..-+| .|++
T Consensus         3 lcpkcgvgvl~pvy~~kgeikvfrcsnp   30 (36)
T d1pvma3           3 LCPKCGVGVLEPVYNEKGEIKVFRCSNP   30 (36)
T ss_dssp             BCTTTSSSBEEEEECTTSCEEEEEESCT
T ss_pred             cCCccCceEEEEeecCCCcEEEEEcCCC
Confidence            56679999999999999976666 3544