Citrus Sinensis ID: 036061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Secondary Structure (PSIPRED)
cHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHccccccEEEEEccHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHcccccccccccccEEEEEEccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHcccccccEEEEEccHcccHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHccccccHHHccccEEEEEEcccccEEEEEEEEEcccc
Coil and Loop (DISEMBL)
maslqnakneshiPAELLIARVMQIHASIAnleslkpskqvNSLFTHLVKlctppssidiktLPQEVQEMRESLIVLCGRAEGLLELEFATffaktpqplnnlnlfpyygnyvKLANLEYrildengvvnpkkvafvgsgpmpltSIVMAKNhlksthfdnfdideAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAkgaraflypvvekhdlldfellsvfhptneviNSVVLVRKPLF
Flexible Loop (DISEMBL)
maslqnakneshiPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLsvfhptnevinsvvlvrkplf
Low Complexity Region (SEG)
MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Disordered region (IsUnstruct)
**************AELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVR****
Disordered Region (DISOPRED)
****************LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Disordered Region (DISEMBL)
*********ESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Disordered Region (DISPRO)
*******KNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q9XGI7	317	Nicotianamine synthase OS	N/A	no	0.929	0.832	0.534	3e-80
Q9C7X5	324	Probable nicotianamine sy	yes	no	0.926	0.811	0.522	3e-76
O80483	320	Nicotianamine synthase 3	no	no	0.933	0.828	0.540	8e-76
Q9FKT9	320	Nicotianamine synthase 2	no	no	0.933	0.828	0.518	2e-75
Q9FF79	320	Nicotianamine synthase 1	no	no	0.933	0.828	0.505	5e-75
Q9ZQV7	335	Probable nicotianamine sy	N/A	no	0.961	0.814	0.465	1e-71
Q9ZQV8	335	Probable nicotianamine sy	N/A	no	0.971	0.823	0.457	9e-71
Q0D3F2	343	Nicotianamine synthase 3	yes	no	0.933	0.772	0.468	2e-69
A2YQ58	343	Nicotianamine synthase 3	N/A	no	0.933	0.772	0.468	2e-69
Q9XFB7	340	Nicotianamine synthase 9	N/A	no	0.936	0.782	0.468	5e-69

>sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/264 (53%), Positives = 192/264 (72%)

Query: 18  LIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVL 77
           ++ +V +++  I+ LE+L PSK VN LFT LV  C PP+ ID+  L Q++QE+R  LI L
Sbjct: 9   VVEKVCELYEQISRLENLSPSKDVNVLFTDLVHTCMPPNPIDVSKLCQKIQEIRSHLIKL 68

Query: 78  CGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFV 137
           CG+AEGLLE  F+   +    PL +L++FPY+ NY+KL+ LEY IL +N    PKK+AF+
Sbjct: 69  CGQAEGLLESHFSKILSSYENPLQHLHIFPYFDNYIKLSLLEYNILTKNTTNIPKKIAFI 128

Query: 138 GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197
           GSGP+PLTS+V+A  HLK+T F N+DID  AN +A  +V++D +   RM F T D+M V 
Sbjct: 129 GSGPLPLTSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTFHTADVMDVT 188

Query: 198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDL 257
             L +YD +FLAALVGM KE+KVK++ H+ KYM  G  L++RSA GARAFLYPV++  DL
Sbjct: 189 CALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARAFLYPVLDPRDL 248

Query: 258 LDFELLSVFHPTNEVINSVVLVRK 281
             FE+LSV+HPT+EVINSV++ RK
Sbjct: 249 RGFEVLSVYHPTDEVINSVIIARK 272

Synthesizes nicotianamine, a polyamine that serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9C7X5|NAS4_ARATH Probable nicotianamine synthase 4 OS=Arabidopsis thaliana GN=NAS4 PE=2 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/268 (52%), Positives = 197/268 (73%), Gaps = 5/268 (1%)

Query: 18  LIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPS-SIDIKTLPQEVQEMRESLIV 76
           L+ ++  ++  I+ LE+LKP + V++LF  LV  C PP+ +ID+  + + +QEMR +LI 
Sbjct: 9   LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68

Query: 77  LCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNPKK 133
           +CG AEG LE  F++        PL++LNLFPYY NY+KL+ LE+ +L++N  G V P+ 
Sbjct: 69  ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFV-PRT 127

Query: 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI 193
           VAF+GSGP+PLTS+V+A +HLK + F NFDID +AN VA ++VSSD +  +RM F T DI
Sbjct: 128 VAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFHTVDI 187

Query: 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE 253
           M V E L  +D +FLAALVGM K+EKVK+++H+ K+M  G +L++RSA G RAFLYP+VE
Sbjct: 188 MDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVE 247

Query: 254 KHDLLDFELLSVFHPTNEVINSVVLVRK 281
             DL  FE+LSV+HPT+EVINS+V+ RK
Sbjct: 248 PCDLEGFEVLSVYHPTDEVINSIVISRK 275

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O80483|NAS3_ARATH Nicotianamine synthase 3 OS=Arabidopsis thaliana GN=NAS3 PE=2 SV=1

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/270 (54%), Positives = 195/270 (72%), Gaps = 5/270 (1%)

Query: 16  ELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPS-SIDIKTLPQEVQEMRESL 74
           E L+  +  ++  I+ LESLKPS+ VN LF  LV  C PP+ +ID+  +   VQE+R +L
Sbjct: 6   EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query: 75  IVLCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNP 131
           I +CG AEG LE  F++        PL++LN+FPYY NY+KL  LE+ +L++N  G V P
Sbjct: 66  IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFV-P 124

Query: 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191
           K VAF+GSGP+PLTSIV+A  HLK T F NFDID +AN +A  +VSSD +  +RM F T 
Sbjct: 125 KSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTV 184

Query: 192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPV 251
           DIM V E L  +D +FLAALVGM+KEEKVK+I+H++K+M  G VL++RSA G RAFLYP+
Sbjct: 185 DIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPI 244

Query: 252 VEKHDLLDFELLSVFHPTNEVINSVVLVRK 281
           VE  DL  FE+LS++HPT++VINSVV+ +K
Sbjct: 245 VEPCDLQGFEVLSIYHPTDDVINSVVISKK 274

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FKT9|NAS2_ARATH Nicotianamine synthase 2 OS=Arabidopsis thaliana GN=NAS2 PE=2 SV=1

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/268 (51%), Positives = 190/268 (70%), Gaps = 3/268 (1%)

Query: 17  LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPP-SSIDIKTLPQE-VQEMRESL 74
           L++ ++M ++  I+NLESLKPSK V++LF  LV  C P  ++ID+  +  E V++MR  L
Sbjct: 7   LVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHL 66

Query: 75  IVLCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKK 133
           I LCG AEG LE  F+         PLN+L++FPYY NY+KL  LE+ +L ++    P K
Sbjct: 67  IKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHTTHVPTK 126

Query: 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI 193
           VAF+GSGPMPLTSIV+AK HL +T F NFDID  AN +A  +VS D +  KRM F T D+
Sbjct: 127 VAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTTDV 186

Query: 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE 253
           +  KE L +YD +FLAALVGM KE KVK I+H+ K+M  G V+++RSA G RAFLYP+V+
Sbjct: 187 LNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFLYPIVD 246

Query: 254 KHDLLDFELLSVFHPTNEVINSVVLVRK 281
             DL  FE+L+++HP+++V+NSVV+ RK
Sbjct: 247 SCDLKGFEVLTIYHPSDDVVNSVVIARK 274

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FF79|NAS1_ARATH Nicotianamine synthase 1 OS=Arabidopsis thaliana GN=NAS1 PE=2 SV=1

 Score =  281 bits (718), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 191/269 (71%), Gaps = 4/269 (1%)

Query: 17  LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPP-SSIDIKTLPQEVQEMRESLI 75
           L++ +++ ++  I+ L+SLKPSK V++LF  LV  C P  ++ID+  + +EV++MR +LI
Sbjct: 7   LVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEEVKDMRANLI 66

Query: 76  VLCGRAEGLLELEFATFFAKTPQ---PLNNLNLFPYYGNYVKLANLEYRILDENGVVNPK 132
            LCG AEG LE  F+T      +   PL++L++FPYY NY+KL  LE+ +L ++    P 
Sbjct: 67  KLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQHSSHVPT 126

Query: 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192
           K+AFVGSGPMPLTSIV+AK HL +T F NFDID  AN +A  +VS D +  KRM F T D
Sbjct: 127 KIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRMIFHTTD 186

Query: 193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVV 252
           ++   E L +YD +FLAALVGM KE KVK I+H+ K+M  G VL++RSA   RAFLYP+V
Sbjct: 187 VLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYPIV 246

Query: 253 EKHDLLDFELLSVFHPTNEVINSVVLVRK 281
           +  DL  F+LL+++HPT++V+NSVV+ RK
Sbjct: 247 DSSDLKGFQLLTIYHPTDDVVNSVVIARK 275

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV7|NAS2_HORVU Probable nicotianamine synthase 2 OS=Hordeum vulgare GN=NAS2 PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 183/279 (65%), Gaps = 6/279 (2%)

Query: 7   AKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQE 66
           A+N   + A  L+ ++  +HA+IA L SL PS  V++LFT LV  C PPS +D+  L  E
Sbjct: 3   AQNNQEVDA--LVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDVTKLGPE 60

Query: 67  VQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDEN 126
            QEMRE LI LC  AEG LE  ++   A   +PL++L +FPYY NY+ L+ LEY +L   
Sbjct: 61  AQEMREGLIRLCSEAEGKLEAHYSDMLAAFDKPLDHLGMFPYYNNYINLSKLEYELLARY 120

Query: 127 --GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK 184
             G   P +VAF+GSGP+P +S V+A  HL  T FDN+D+  AAND A ++  +D +   
Sbjct: 121 VPGGYRPARVAFIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADRDVGA 180

Query: 185 RMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244
           RM F T D+  +  +L +YD +FLAALVGM+ E+K K+I H+  +M DG  L+VRSA GA
Sbjct: 181 RMSFHTADVADLAGELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHGA 240

Query: 245 RAFLYPVVEKHDL--LDFELLSVFHPTNEVINSVVLVRK 281
           R FLYP+V+  D+    FE+L+V HP ++V+NSV++ +K
Sbjct: 241 RGFLYPIVDPQDIGRGGFEVLAVCHPDDDVVNSVIIAQK 279

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV8|NAS3_HORVU Probable nicotianamine synthase 3 OS=Hordeum vulgare GN=NAS3 PE=2 SV=1

 Score =  266 bits (681), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 130/284 (45%), Positives = 184/284 (64%), Gaps = 8/284 (2%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MA+  N K+ +      L+ ++  +HA+IA L SL PS  V++LFT LV  C PPS +D+
Sbjct: 1   MAAQNNNKDVA-----ALVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDV 55

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
             L  E QEMRE LI LC  AEG LE  ++   A    PL++L +FPYY NY+ L+ LEY
Sbjct: 56  TKLGPEAQEMREGLIRLCSEAEGKLEAHYSDMLAAFDNPLDHLGIFPYYSNYINLSKLEY 115

Query: 121 RILDENGVVN-PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD 179
            +L      + P +VAF+GSGP+P +S V+A  HL  T FDN+D+  AAND A ++  +D
Sbjct: 116 ELLARYVRRHRPARVAFIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRAD 175

Query: 180 IEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239
            +   RM F T D+  +  +L +YD +FLAALVGM+ E+K K+I H+  +M DG  L+VR
Sbjct: 176 TDVGARMSFHTADVADLASELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVR 235

Query: 240 SAKGARAFLYPVVEKHDL--LDFELLSVFHPTNEVINSVVLVRK 281
           SA GAR FLYP+V+  D+    FE+L+V HP ++V+NSV++ +K
Sbjct: 236 SAHGARGFLYPIVDPQDIGRGGFEVLAVCHPDDDVVNSVIIAQK 279

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0D3F2|NAS3_ORYSJ Nicotianamine synthase 3 OS=Oryza sativa subsp. japonica GN=NAS3 PE=2 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 177/269 (65%), Gaps = 4/269 (1%)

Query: 18  LIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVL 77
           L+ ++  + A+I  L SL PS +VN+LFT LV  C PPSS+D++ L  E Q+MR  LI L
Sbjct: 25  LVEKITGLAAAIGKLPSLSPSPEVNALFTELVMTCIPPSSVDVEQLGAEAQDMRGRLIRL 84

Query: 78  CGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNPKKVA 135
           C  AEG LE  ++   A    PL++L LFPY+ NY++LA LEY +L  +      P ++A
Sbjct: 85  CADAEGHLEAHYSDVLAAHDNPLDHLALFPYFNNYIQLAQLEYALLARHLPAAPPPSRLA 144

Query: 136 FVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           F+GSGP+PL+S+V+A  HL +  F N+DI   AN  A ++V +D +   RM F T D+  
Sbjct: 145 FLGSGPLPLSSLVLAARHLPAASFHNYDICADANRRASRLVRADRDLSARMAFHTSDVAH 204

Query: 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH 255
           V   L  YD +FLAALVGM+ EEK ++++H+ K+M  G  L+VRSA GAR FLYPVV+  
Sbjct: 205 VTTDLAAYDVVFLAALVGMAAEEKARMVEHLGKHMAPGAALVVRSAHGARGFLYPVVDPE 264

Query: 256 DLL--DFELLSVFHPTNEVINSVVLVRKP 282
           ++    F++L+V HP  EVINSV++ RKP
Sbjct: 265 EIRRGGFDVLAVHHPEGEVINSVIIARKP 293

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|A2YQ58|NAS3_ORYSI Nicotianamine synthase 3 OS=Oryza sativa subsp. indica GN=NAS3 PE=2 SV=2

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 177/269 (65%), Gaps = 4/269 (1%)

Query: 18  LIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVL 77
           L+ ++  + A+I  L SL PS +VN+LFT LV  C PPSS+D++ L  E Q+MR  LI L
Sbjct: 25  LVEKITGLAAAIGKLPSLSPSPEVNALFTELVMTCIPPSSVDVEQLGAEAQDMRGRLIRL 84

Query: 78  CGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNPKKVA 135
           C  AEG LE  ++   A    PL++L LFPY+ NY++LA LEY +L  +      P ++A
Sbjct: 85  CADAEGHLEAHYSDVLAAHDNPLDHLALFPYFNNYIQLAQLEYALLARHLPAAPPPSRLA 144

Query: 136 FVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           F+GSGP+PL+S+V+A  HL +  F N+DI   AN  A ++V +D +   RM F T D+  
Sbjct: 145 FLGSGPLPLSSLVLAARHLPAASFHNYDICADANRRASRLVRADRDLSARMAFHTSDVAH 204

Query: 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH 255
           V   L  YD +FLAALVGM+ EEK ++++H+ K+M  G  L+VRSA GAR FLYPVV+  
Sbjct: 205 VTTDLAAYDVVFLAALVGMAAEEKARMVEHLGKHMAPGAALVVRSAHGARGFLYPVVDPE 264

Query: 256 DLL--DFELLSVFHPTNEVINSVVLVRKP 282
           ++    F++L+V HP  EVINSV++ RKP
Sbjct: 265 EIRRGGFDVLAVHHPEGEVINSVIIARKP 293

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9XFB7|NAS9_HORVU Nicotianamine synthase 9 OS=Hordeum vulgare GN=NAS9 PE=1 SV=1

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 179/269 (66%), Gaps = 3/269 (1%)

Query: 16  ELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLI 75
           E L+ ++  + A+I  L SL PS +VN+LFT LV  C PPS++D+  L  + QEMR  LI
Sbjct: 16  EALVKKITGLAAAIGELPSLSPSPEVNALFTELVTSCIPPSTVDVDALGPDAQEMRARLI 75

Query: 76  VLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDEN-GVVNPKKV 134
            LC  AEG LE  ++   A    PL++L LFPY+ NY+KL+ LE+ +L  +     P +V
Sbjct: 76  RLCADAEGHLEAHYSDLLAAHDNPLDHLTLFPYFNNYIKLSQLEHGLLARHVPGPAPARV 135

Query: 135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM 194
           AF+GSGP+PL+S+V+A  HL    FDN+DI   AN+ A ++V +D +   RM F T D+ 
Sbjct: 136 AFLGSGPLPLSSLVLAARHLPDASFDNYDISGEANERASRLVRADADAGARMAFRTADVA 195

Query: 195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEK 254
            V  +L  YD +FLAALVGM+ EEK ++++H+ ++M  G  L+VRSA GAR FLYPVV+ 
Sbjct: 196 DVTTELEGYDVVFLAALVGMAAEEKARLVEHLGRHMAPGAALVVRSAHGARGFLYPVVDP 255

Query: 255 HDLL--DFELLSVFHPTNEVINSVVLVRK 281
            ++    FE+L+V HP +EVINSV++ RK
Sbjct: 256 EEIRRGGFEVLTVHHPEDEVINSVIIARK 284

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
255585340	319	Nicotianamine synthase, putative [Ricinu	1.0	0.890	0.771	1e-129
224131702	284	predicted protein [Populus trichocarpa]	1.0	1.0	0.792	1e-128
225446092	284	PREDICTED: nicotianamine synthase isofor	0.996	0.996	0.752	1e-127
255585344	669	nicotianamine synthase, putative [Ricinu	0.989	0.420	0.733	1e-122
356528734	286	PREDICTED: nicotianamine synthase-like [	0.992	0.986	0.718	1e-120
388512831	284	unknown [Medicago truncatula]	0.992	0.992	0.687	1e-114
449500282	285	PREDICTED: nicotianamine synthase-like [	0.989	0.985	0.669	1e-112
449457247	289	PREDICTED: nicotianamine synthase-like [	0.989	0.972	0.669	1e-112
225450591	308	PREDICTED: nicotianamine synthase [Vitis	0.936	0.863	0.582	1e-85
147778256	308	hypothetical protein VITISV_020491 [Viti	0.936	0.863	0.578	2e-85

>gi|255585340|ref|XP_002533367.1| Nicotianamine synthase, putative [Ricinus communis] gi|223526789|gb|EEF29012.1| Nicotianamine synthase, putative [Ricinus communis]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/284 (77%), Positives = 250/284 (88%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MASLQN   +S IPAELLIA + QIH +I+ L+SL+PSKQVN LF+HLVKLC  PSSIDI
Sbjct: 36  MASLQNTNFDSQIPAELLIASITQIHGAISKLDSLRPSKQVNGLFSHLVKLCIIPSSIDI 95

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
            +LP+E QEMR+SLIVLCGRAEGLLELEFATF  K PQPL N+NLFPYY NYVKLANLEY
Sbjct: 96  TSLPEEAQEMRKSLIVLCGRAEGLLELEFATFLIKIPQPLANVNLFPYYANYVKLANLEY 155

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
            IL ENG+V PKKVAFVGSGPMPLTSIVMA +HL++THFDNFDIDEAANDVAR+IV SD 
Sbjct: 156 SILSENGIVQPKKVAFVGSGPMPLTSIVMATHHLRATHFDNFDIDEAANDVARKIVGSDS 215

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           + EKRMKF TCD+M+VKEKL EYDCIFLAALVGMSKEEKVKI+ H+RKYMK+GG+LLVRS
Sbjct: 216 DLEKRMKFETCDVMEVKEKLREYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGILLVRS 275

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF 284
           A GARAFLYPV++  DL+ F++LS+FHPTN+VINSV+L RKP F
Sbjct: 276 ANGARAFLYPVIDDKDLVGFDVLSIFHPTNDVINSVILARKPSF 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131702|ref|XP_002328087.1| predicted protein [Populus trichocarpa] gi|222837602|gb|EEE75967.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/284 (79%), Positives = 251/284 (88%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MA+LQ +  ES I  ELLIARV QIHASI+ L SL+PSKQVNSLF++LVKLC  PSSIDI
Sbjct: 1   MAALQISNCESQISTELLIARVTQIHASISKLSSLRPSKQVNSLFSNLVKLCILPSSIDI 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
             LP+EVQ MRESLI LCG AEGLLELEFATF +K  QPLNNLNLFPYYGNYVKLAN+EY
Sbjct: 61  TALPEEVQAMRESLINLCGHAEGLLELEFATFLSKIHQPLNNLNLFPYYGNYVKLANIEY 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           RIL+E+ V+ PKKVAFVGSGPMPLTS +MA +H+K THFDNFDIDEAANDVARQIV+SD+
Sbjct: 121 RILNESVVLQPKKVAFVGSGPMPLTSFIMATHHMKFTHFDNFDIDEAANDVARQIVASDV 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           E EKRMKF T DIM+VKEKL EYDCIFLAALVGMSK +KVKI+ HIRKYMK+GGVLLVRS
Sbjct: 181 ELEKRMKFETGDIMEVKEKLSEYDCIFLAALVGMSKADKVKILGHIRKYMKEGGVLLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPLF 284
           AKGARAFLYPVVE+ D+L FELLS+FHPTN+VINSVVL+RKP F
Sbjct: 241 AKGARAFLYPVVEEQDVLGFELLSIFHPTNDVINSVVLLRKPAF 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446092|ref|XP_002270091.1| PREDICTED: nicotianamine synthase isoform 1 [Vitis vinifera] gi|359485000|ref|XP_003633197.1| PREDICTED: nicotianamine synthase isoform 2 [Vitis vinifera] gi|147835105|emb|CAN70188.1| hypothetical protein VITISV_039081 [Vitis vinifera]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/283 (75%), Positives = 253/283 (89%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MASLQ +  ++++  ELLIAR++QIHA+I  LESL+PSKQVNSLFTHLVKLCTPPSSIDI
Sbjct: 1   MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDI 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
             LP+E+Q +R+SLI LCGRAEGLLELEF+TF    PQ LNNLNLFPYYGNYVKLANLEY
Sbjct: 61  TALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNVPQALNNLNLFPYYGNYVKLANLEY 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           RIL +NGVV PKKVAF+GSGP+PLT+++MA +H+KST FDNFD+DE+AN VARQ+V+SD 
Sbjct: 121 RILSDNGVVQPKKVAFIGSGPLPLTTLIMATHHMKSTCFDNFDMDESANAVARQLVASDA 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           E ++R+KF T DIM+V++KLGEYDCIFLAALVGMSKEEKVKI+ H+RKYMK+GG LLVRS
Sbjct: 181 ELQRRVKFETRDIMEVRDKLGEYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGTLLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPL 283
           AKGARAFLYPVVE+ DLL FE+L++FHPTNEVINSVVL RKP+
Sbjct: 241 AKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLARKPI 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585344|ref|XP_002533369.1| nicotianamine synthase, putative [Ricinus communis] gi|223526791|gb|EEF29014.1| nicotianamine synthase, putative [Ricinus communis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/281 (73%), Positives = 245/281 (87%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MASLQN+ + S IPAE+ I R+ QIH +I+ L+SL+PSKQVNSLF+HLVKLC  PSSI+I
Sbjct: 1   MASLQNSNSGSQIPAEVFIPRIKQIHGAISKLDSLRPSKQVNSLFSHLVKLCILPSSINI 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
            +LP+E QEMR+SLI LCGRAEGLLEL+FATF  K+PQP N+LNLFPYYGNYVKLANLEY
Sbjct: 61  TSLPKEAQEMRKSLIDLCGRAEGLLELDFATFLIKSPQPFNHLNLFPYYGNYVKLANLEY 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           RIL E  ++ PKKVAF+GSG MPLTSI+MA +HLK   FDNFDIDE+AN+ AR+IV SD 
Sbjct: 121 RILGEISIIQPKKVAFIGSGAMPLTSIIMATHHLKLAQFDNFDIDESANEFARKIVGSDS 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           + +KRMKF TCD+M+VKEKLGEYDCIFLAALVGM+KEEKVKII+HIRKYMK+GG+LLVRS
Sbjct: 181 DLQKRMKFETCDVMEVKEKLGEYDCIFLAALVGMTKEEKVKIIRHIRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRK 281
           A GARAFLYPVV+  DL+ FE LS+FHPTN+VINSV+ +R+
Sbjct: 241 ANGARAFLYPVVDYKDLVGFEFLSIFHPTNDVINSVLSIRR 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528734|ref|XP_003532954.1| PREDICTED: nicotianamine synthase-like [Glycine max]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/284 (71%), Positives = 250/284 (88%), Gaps = 2/284 (0%)

Query: 1   MASLQNAKN--ESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSI 58
           MA+ Q+  N     IP ELLI+++MQ+HASI+ LESL+P KQVNS FTHLVKLCT PS+I
Sbjct: 1   MAAFQSINNIETQQIPPELLISQIMQLHASISKLESLRPCKQVNSHFTHLVKLCTLPSTI 60

Query: 59  DIKTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANL 118
           DI+ LP+EVQ+MR+SLI L G AEGLLELEF+TF + TP+P+ N+ LFPYYGNYVKLAN+
Sbjct: 61  DIEALPKEVQDMRDSLINLSGHAEGLLELEFSTFISLTPEPMKNVTLFPYYGNYVKLANM 120

Query: 119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS 178
           E +IL ENGV++PKKVAFVGSGPMPLTSIVMA +H++STHFDNFDIDE AN+VAR+IV+S
Sbjct: 121 ESKILKENGVLSPKKVAFVGSGPMPLTSIVMATHHMESTHFDNFDIDEKANEVARKIVAS 180

Query: 179 DIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
           D   EKRMKF T D+M+V+E+LG+YDCIFLAALVGMS+E KVKI+ HIRKYMK+GG LLV
Sbjct: 181 DSALEKRMKFETQDVMEVRERLGQYDCIFLAALVGMSREAKVKILGHIRKYMKEGGTLLV 240

Query: 239 RSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKP 282
           RSAKGARAFLYP+VE+ D+++FE+L++FHPTN+VINSVVL+RKP
Sbjct: 241 RSAKGARAFLYPIVEERDMVNFEVLTIFHPTNDVINSVVLLRKP 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512831|gb|AFK44477.1| unknown [Medicago truncatula]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/282 (68%), Positives = 241/282 (85%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MAS Q+   E+ IP ELLI+++MQIH +I+ LESL+PSKQVN+L THLVKLC  PSSI+I
Sbjct: 1   MASFQSFNFETEIPQELLISQIMQIHTTISKLESLRPSKQVNTLLTHLVKLCILPSSIEI 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
           + LPQEV+ MRESLI +CG+AEGLLELEF+TF ++TP P  NL LFPYYGNYVKLAN E 
Sbjct: 61  EALPQEVKTMRESLIPICGKAEGLLELEFSTFISQTPNPAKNLTLFPYYGNYVKLANYEN 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           +IL ENGVV+ KKVAF+GSGPMPL+SI++A +H++STHFDNFDIDE AN+VA +IV+SD 
Sbjct: 121 KILKENGVVDAKKVAFIGSGPMPLSSIILATHHMESTHFDNFDIDEKANEVASKIVASDK 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
             EKRMKFVT  IM+ KE+LG+YDCIFLAALVGM + EKVKI+ HI KYMK+G VLLVRS
Sbjct: 181 ALEKRMKFVTQYIMEAKERLGQYDCIFLAALVGMRRSEKVKILGHISKYMKEGSVLLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKP 282
           AKG+RAFLYP+VE++D+++FE L++FHPT++ INSV+  RKP
Sbjct: 241 AKGSRAFLYPIVEENDMVNFEGLTIFHPTDDDINSVIFFRKP 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500282|ref|XP_004161056.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/281 (66%), Positives = 236/281 (83%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MA+LQ    E+ I A  L+ R++ +H SI+ LE+L+P K+VN+LFT+LV LC  P SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
            TLP  +Q +RESLI+LCG+AEGLLELEF+T  +K P+PLNNL LFPYY NY+KLANLE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLEN 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           +IL++NG+VNPKKVAFVGSGP+PLTSI+MA  H+K THFDN+D+D  ANDVAR+IV SD 
Sbjct: 121 KILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDS 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           + E RMKF + DI+ VKE+LG YDC+FLAALVGM+KEEKVKII+H+RKYMK+GG+LLVRS
Sbjct: 181 DLEGRMKFFSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRK 281
           AKG RAFLYPVVE  DL+ FE+LS+FHPT++V+NSV+L RK
Sbjct: 241 AKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTRK 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457247|ref|XP_004146360.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/281 (66%), Positives = 236/281 (83%)

Query: 1   MASLQNAKNESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDI 60
           MA+LQ    E+ I A  L+ R++ +H SI+ LE+L+P K+VN+LFT+LV LC  P SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  KTLPQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEY 120
            TLP  +Q +RESLI+LCG+AEGLLELEF+T  +K P+PLNNL LFPYY NY+KLANLE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLEN 120

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           +IL++NG+VNPKKVAFVGSGP+PLTSI+MA  H+K THFDN+D+D  ANDVAR+IV SD 
Sbjct: 121 KILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDS 180

Query: 181 EFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240
           + E RMKF + DI+ VKE+LG YDC+FLAALVGM+KEEKVKII+H+RKYMK+GG+LLVRS
Sbjct: 181 DLEGRMKFCSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRK 281
           AKG RAFLYPVVE  DL+ FE+LS+FHPT++V+NSV+L RK
Sbjct: 241 AKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTRK 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450591|ref|XP_002282175.1| PREDICTED: nicotianamine synthase [Vitis vinifera]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 198/266 (74%)

Query: 16  ELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLI 75
           ELL+ +V +++  I+ LESLKPSK VN LFT LV+ C PPS ID+  L + VQEMR  LI
Sbjct: 6   ELLVEKVCEMYEKISRLESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  VLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVA 135
            LCG AEGLLE  F+T       PL++LNLFPYY NY+KL+ LE+ +L +N    P K+A
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVPSKIA 125

Query: 136 FVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           FVGSGP+PLTSIV+A  HL +T F N+DID AAN +A  +VSSD +F KRM F T DIM 
Sbjct: 126 FVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPDFSKRMLFHTTDIMN 185

Query: 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH 255
           V  +L EYD ++LAALVGM KEEK++++ H+ K+M  G +L++RSA GARAFLYPV++  
Sbjct: 186 VTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSAHGARAFLYPVIDPC 245

Query: 256 DLLDFELLSVFHPTNEVINSVVLVRK 281
           DL  FE+LS+FHPT+EVINSVV+ RK
Sbjct: 246 DLRGFEVLSIFHPTDEVINSVVVARK 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778256|emb|CAN65138.1| hypothetical protein VITISV_020491 [Vitis vinifera]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/266 (57%), Positives = 197/266 (74%)

Query: 16  ELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLI 75
           ELL+ +V +++  I+  ESLKPSK VN LFT LV+ C PPS ID+  L + VQEMR  LI
Sbjct: 6   ELLVEKVCEMYEKISRFESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  VLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVA 135
            LCG AEGLLE  F+T       PL++LNLFPYY NY+KL+ LE+ +L +N    P K+A
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVPSKIA 125

Query: 136 FVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           FVGSGP+PLTSIV+A  HL +T F N+DID AAN +A  +V+SD +F KRM F T DIM 
Sbjct: 126 FVGSGPLPLTSIVLASYHLTTTTFHNYDIDPAANSMAAHLVASDPDFSKRMLFHTTDIMN 185

Query: 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH 255
           V  +L EYD ++LAALVGM KEEK++++ H+ KYM  G +L++RSA GARAFLYPV++  
Sbjct: 186 VTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKYMAPGALLMLRSAHGARAFLYPVIDPC 245

Query: 256 DLLDFELLSVFHPTNEVINSVVLVRK 281
           DL  FE+LS+FHPT+EVINSVV+ RK
Sbjct: 246 DLRGFEVLSIFHPTDEVINSVVVARK 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2195301	320	NAS3 "AT1G09240" [Arabidopsis	0.933	0.828	0.540	1.4e-71
TAIR|locus:2010718	324	NAS4 "nicotianamine synthase 4	0.926	0.811	0.522	2.3e-71
TAIR|locus:2161770	320	NAS2 "AT5G56080" [Arabidopsis	0.933	0.828	0.518	2.6e-70
TAIR|locus:2175304	320	NAS1 "AT5G04950" [Arabidopsis	0.933	0.828	0.505	2.4e-69

TAIR|locus:2195301 NAS3 "AT1G09240" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 146/270 (54%), Positives = 195/270 (72%)

Query:    16 ELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPS-SIDIKTLPQEVQEMRESL 74
             E L+  +  ++  I+ LESLKPS+ VN LF  LV  C PP+ +ID+  +   VQE+R +L
Sbjct:     6 EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query:    75 IVLCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNP 131
             I +CG AEG LE  F++        PL++LN+FPYY NY+KL  LE+ +L++N  G V P
Sbjct:    66 IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFV-P 124

Query:   132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191
             K VAF+GSGP+PLTSIV+A  HLK T F NFDID +AN +A  +VSSD +  +RM F T 
Sbjct:   125 KSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTV 184

Query:   192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPV 251
             DIM V E L  +D +FLAALVGM+KEEKVK+I+H++K+M  G VL++RSA G RAFLYP+
Sbjct:   185 DIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPI 244

Query:   252 VEKHDLLDFELLSVFHPTNEVINSVVLVRK 281
             VE  DL  FE+LS++HPT++VINSVV+ +K
Sbjct:   245 VEPCDLQGFEVLSIYHPTDDVINSVVISKK 274

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2010718 NAS4 "nicotianamine synthase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 140/268 (52%), Positives = 197/268 (73%)

Query:    18 LIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPS-SIDIKTLPQEVQEMRESLIV 76
             L+ ++  ++  I+ LE+LKP + V++LF  LV  C PP+ +ID+  + + +QEMR +LI 
Sbjct:     9 LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68

Query:    77 LCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDEN--GVVNPKK 133
             +CG AEG LE  F++        PL++LNLFPYY NY+KL+ LE+ +L++N  G V P+ 
Sbjct:    69 ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFV-PRT 127

Query:   134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI 193
             VAF+GSGP+PLTS+V+A +HLK + F NFDID +AN VA ++VSSD +  +RM F T DI
Sbjct:   128 VAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFHTVDI 187

Query:   194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE 253
             M V E L  +D +FLAALVGM K+EKVK+++H+ K+M  G +L++RSA G RAFLYP+VE
Sbjct:   188 MDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVE 247

Query:   254 KHDLLDFELLSVFHPTNEVINSVVLVRK 281
               DL  FE+LSV+HPT+EVINS+V+ RK
Sbjct:   248 PCDLEGFEVLSVYHPTDEVINSIVISRK 275

GO:0005634 "nucleus" evidence=ISM

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IGI

GO:0030418 "nicotianamine biosynthetic process" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2161770 NAS2 "AT5G56080" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 139/268 (51%), Positives = 190/268 (70%)

Query:    17 LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPP-SSIDIKTLPQE-VQEMRESL 74
             L++ ++M ++  I+NLESLKPSK V++LF  LV  C P  ++ID+  +  E V++MR  L
Sbjct:     7 LVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHL 66

Query:    75 IVLCGRAEGLLELEFATFFAK-TPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKK 133
             I LCG AEG LE  F+         PLN+L++FPYY NY+KL  LE+ +L ++    P K
Sbjct:    67 IKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHTTHVPTK 126

Query:   134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI 193
             VAF+GSGPMPLTSIV+AK HL +T F NFDID  AN +A  +VS D +  KRM F T D+
Sbjct:   127 VAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTTDV 186

Query:   194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE 253
             +  KE L +YD +FLAALVGM KE KVK I+H+ K+M  G V+++RSA G RAFLYP+V+
Sbjct:   187 LNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFLYPIVD 246

Query:   254 KHDLLDFELLSVFHPTNEVINSVVLVRK 281
               DL  FE+L+++HP+++V+NSVV+ RK
Sbjct:   247 SCDLKGFEVLTIYHPSDDVVNSVVIARK 274

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP;RCA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2175304 NAS1 "AT5G04950" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 136/269 (50%), Positives = 191/269 (71%)

Query:    17 LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPP-SSIDIKTLPQEVQEMRESLI 75
             L++ +++ ++  I+ L+SLKPSK V++LF  LV  C P  ++ID+  + +EV++MR +LI
Sbjct:     7 LVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEEVKDMRANLI 66

Query:    76 VLCGRAEGLLELEFATFFAKTPQ---PLNNLNLFPYYGNYVKLANLEYRILDENGVVNPK 132
              LCG AEG LE  F+T      +   PL++L++FPYY NY+KL  LE+ +L ++    P 
Sbjct:    67 KLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQHSSHVPT 126

Query:   133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192
             K+AFVGSGPMPLTSIV+AK HL +T F NFDID  AN +A  +VS D +  KRM F T D
Sbjct:   127 KIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRMIFHTTD 186

Query:   193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVV 252
             ++   E L +YD +FLAALVGM KE KVK I+H+ K+M  G VL++RSA   RAFLYP+V
Sbjct:   187 VLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYPIV 246

Query:   253 EKHDLLDFELLSVFHPTNEVINSVVLVRK 281
             +  DL  F+LL+++HPT++V+NSVV+ RK
Sbjct:   247 DSSDLKGFQLLTIYHPTDDVVNSVVIARK 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      284       284   0.00085  115 3  11 22  0.48    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  178 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.89u 0.09s 26.98t   Elapsed:  00:00:08
  Total cpu time:  26.89u 0.09s 26.98t   Elapsed:  00:00:08
  Start:  Fri May 10 22:01:07 2013   End:  Fri May 10 22:01:15 2013

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGI7	NAS_SOLLC	2, ., 5, ., 1, ., 4, 3	0.5340	0.9295	0.8328	N/A	no
Q9C7X5	NAS4_ARATH	2, ., 5, ., 1, ., 4, 3	0.5223	0.9260	0.8117	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.921
3rd Layer	2.5.1.43	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
PLN03075	296	PLN03075, PLN03075, nicotianamine synthase; Provis	1e-167
pfam03059	277	pfam03059, NAS, Nicotianamine synthase protein	1e-119
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	9e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-05

>gnl|CDD|178624 PLN03075, PLN03075, nicotianamine synthase; Provisional

 Score =  466 bits (1200), Expect = e-167
 Identities = 166/273 (60%), Positives = 208/273 (76%)

Query: 10  ESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQE 69
           E     ELL+ ++  ++A I+ LESLKPSK+VN+LFT LV  C PPSSID+  L +E+QE
Sbjct: 3   EMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQE 62

Query: 70  MRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVV 129
           MR  LI LCG AEGLLE  F+T       PL++LNLFPYY NY+KL+ LE+ +L ++   
Sbjct: 63  MRSKLIKLCGEAEGLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG 122

Query: 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV 189
            P KVAFVGSGP+PLTSIV+AK+HL +T F NFDID +ANDVAR++VSSD +  KRM F 
Sbjct: 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH 182

Query: 190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLY 249
           T D+M V E L EYD +FLAALVGM KEEKVK+I+H+ K+M  G +L++RSA GARAFLY
Sbjct: 183 TADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242

Query: 250 PVVEKHDLLDFELLSVFHPTNEVINSVVLVRKP 282
           PVV+  DL  FE+LSVFHPT+EVINSV++ RKP
Sbjct: 243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIARKP 275

Length = 296

>gnl|CDD|217343 pfam03059, NAS, Nicotianamine synthase protein

 Score =  342 bits (878), Expect = e-119
 Identities = 137/269 (50%), Positives = 188/269 (69%)

Query: 15  AELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESL 74
           +E L+ +++ ++A+I+ L SL PS  VN+LFT LV  C PPS +D+  L  E+QE+R  L
Sbjct: 6   SEALVEKILDLYAAISKLPSLSPSPDVNALFTQLVTTCIPPSPVDVTKLGPEIQEIRSLL 65

Query: 75  IVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKV 134
           I LC  AEGLLE  ++   A    PL++L +FPYY NY+KL+ LEY +L  +    P ++
Sbjct: 66  IRLCSTAEGLLESHYSDILAAFDNPLDHLEIFPYYKNYLKLSKLEYDLLSRHVTGVPSRI 125

Query: 135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM 194
           AF+GSGP+PLTS+V+A  HL  T FDN+DI   AND A ++VS+D +   RM F T D++
Sbjct: 126 AFIGSGPLPLTSLVLASYHLPDTSFDNYDICGLANDRASKLVSADGDLSSRMSFHTADVL 185

Query: 195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEK 254
            V  +L  YD +FLAALVGM KEEK K+I H+ K+M  G  L++RSA GARAFLYPVV+ 
Sbjct: 186 DVTTELKAYDVVFLAALVGMDKEEKAKVIDHLGKHMAPGAALVLRSAHGARAFLYPVVDP 245

Query: 255 HDLLDFELLSVFHPTNEVINSVVLVRKPL 283
            DL  FE+L+V+HP +EVINSV++ RK +
Sbjct: 246 CDLRGFEVLAVYHPEDEVINSVIIARKKI 274

Nicotianamine synthase EC:2.5.1.43 catalyzes the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold. Length = 277

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 138 GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197
           G+G     +I +A+           D+     ++AR+          R+ FV  D     
Sbjct: 11  GTG---SLAIELARLF-PGARVTGVDLSPEMLELARENAKLA--LGPRITFVQGDAPDAL 64

Query: 198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
           + L  +D +F    +G    + ++++  +   +K GG L++
Sbjct: 65  DLLEGFDAVF----IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI 180
           R+LD             G+G     ++ +A            DI   A ++AR+      
Sbjct: 1   RVLD----------LGCGTG---ALALALASGPGA--RVTGVDISPVALELARKAA--AA 43

Query: 181 EFEKRMKFVTCDIMQVKEKLGE-YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
                ++ +  D  ++  +  E +D I     +    E+  + ++  R+ +K GGVL++
Sbjct: 44  LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	100.0
PLN03075	296	nicotianamine synthase; Provisional	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.78
PLN02244	340	tocopherol O-methyltransferase	99.7
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.68
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.67
COG4122	219	Predicted O-methyltransferase [General function pr	99.67
PRK11207	197	tellurite resistance protein TehB; Provisional	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.66
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.64
PLN02476	278	O-methyltransferase	99.62
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.62
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.59
PRK12335	287	tellurite resistance protein TehB; Provisional	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.59
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.57
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.57
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.57
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.55
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.55
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.55
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.54
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.53
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.52
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.52
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.52
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.52
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.48
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.48
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.47
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.47
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.46
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.46
TIGR03438	301	probable methyltransferase. This model represents	99.45
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.45
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.45
PRK04457	262	spermidine synthase; Provisional	99.44
PRK07402	196	precorrin-6B methylase; Provisional	99.44
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.44
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.43
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.43
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.42
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.42
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.42
PRK08317	241	hypothetical protein; Provisional	99.41
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.41
PRK06922	677	hypothetical protein; Provisional	99.41
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.4
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.39
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.39
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.39
COG2890	280	HemK Methylase of polypeptide chain release factor	99.38
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.38
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.38
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.36
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.36
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.36
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.36
PRK04266	226	fibrillarin; Provisional	99.36
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.35
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.33
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.33
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.33
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.32
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.32
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.32
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.31
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.31
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.3
PRK14967	223	putative methyltransferase; Provisional	99.3
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.29
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.29
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.29
PLN02490	340	MPBQ/MSBQ methyltransferase	99.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.28
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.28
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.27
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.26
PRK14968	188	putative methyltransferase; Provisional	99.26
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.26
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.26
PRK00811	283	spermidine synthase; Provisional	99.26
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.26
COG4123	248	Predicted O-methyltransferase [General function pr	99.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.25
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.25
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.25
KOG1271	227	consensus Methyltransferases [General function pre	99.24
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.24
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.23
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.23
PLN02366	308	spermidine synthase	99.23
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.23
PLN02336	475	phosphoethanolamine N-methyltransferase	99.22
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.2
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.19
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.19
PRK05785	226	hypothetical protein; Provisional	99.18
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.18
PRK01581	374	speE spermidine synthase; Validated	99.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.16
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.15
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.15
KOG4300	252	consensus Predicted methyltransferase [General fun	99.14
PRK06202	232	hypothetical protein; Provisional	99.13
PTZ00146	293	fibrillarin; Provisional	99.11
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.09
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.09
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.07
TIGR00438	188	rrmJ cell division protein FtsJ.	99.07
PLN02672	1082	methionine S-methyltransferase	99.06
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.03
PRK03612	521	spermidine synthase; Provisional	99.01
PLN02823	336	spermine synthase	99.01
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.0
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.0
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.98
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.92
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.89
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.88
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.87
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.86
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.86
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.85
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.85
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.84
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.84
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.8
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.8
KOG2904	328	consensus Predicted methyltransferase [General fun	98.78
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.78
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.77
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.76
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.75
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.73
PHA03411	279	putative methyltransferase; Provisional	98.72
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.71
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.68
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.67
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.67
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.66
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.66
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.65
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.64
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.64
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.63
PHA03412	241	putative methyltransferase; Provisional	98.63
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.62
PRK00536	262	speE spermidine synthase; Provisional	98.62
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.62
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.61
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.6
KOG2361	264	consensus Predicted methyltransferase [General fun	98.59
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.59
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.58
PRK04148	134	hypothetical protein; Provisional	98.57
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.57
KOG2899	288	consensus Predicted methyltransferase [General fun	98.57
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.57
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.57
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.55
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.53
COG2521	287	Predicted archaeal methyltransferase [General func	98.52
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.52
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.5
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.49
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.49
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.48
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.48
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.48
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.44
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.41
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.35
KOG3010	261	consensus Methyltransferase [General function pred	98.34
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.34
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.32
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.3
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.28
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.27
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.25
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.25
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.24
COG2520	341	Predicted methyltransferase [General function pred	98.23
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.21
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.21
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.18
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.18
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.16
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.14
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.14
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.13
KOG2730	263	consensus Methylase [General function prediction o	98.13
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.12
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.12
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.07
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.03
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.99
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.99
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.98
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.97
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.97
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.97
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.96
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.9
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.87
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.87
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.78
PRK10742	250	putative methyltransferase; Provisional	97.78
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.75
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.74
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.72
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.71
COG4076	252	Predicted RNA methylase [General function predicti	97.71
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.69
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.68
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.66
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.66
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.65
COG3897	218	Predicted methyltransferase [General function pred	97.63
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.62
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.56
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.54
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.53
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.47
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	97.45
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.45
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	97.43
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.43
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.43
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.39
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.37
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.35
PF13679	141	Methyltransf_32: Methyltransferase domain	97.34
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.33
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.31
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.31
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.3
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.3
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.29
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.25
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.22
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.21
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	97.2
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.18
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.17
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.14
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	97.13
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	97.09
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.07
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	97.06
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.06
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.03
PLN02740	381	Alcohol dehydrogenase-like	97.01
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.98
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.98
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.98
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.89
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.87
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.85
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.84
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.77
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.74
PLN02514	357	cinnamyl-alcohol dehydrogenase	96.73
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.73
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.71
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.7
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.68
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.68
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.68
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.67
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.66
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.65
KOG1331	293	consensus Predicted methyltransferase [General fun	96.63
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.63
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.63
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.62
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.62
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.58
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.58
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.53
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.52
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.51
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.51
KOG2940	325	consensus Predicted methyltransferase [General fun	96.5
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.49
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	96.46
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.46
PLN02827	378	Alcohol dehydrogenase-like	96.45
PHA01634	156	hypothetical protein	96.41
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	96.4
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.38
PRK07417	279	arogenate dehydrogenase; Reviewed	96.36
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.36
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.35
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.33
PLN02494	477	adenosylhomocysteinase	96.33
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.26
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.23
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.22
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.21
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.21
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.21
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.2
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	96.18
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.16
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.14
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	96.13
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.13
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.13
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.1
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.09
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.06
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	96.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.04
PRK10083	339	putative oxidoreductase; Provisional	96.04
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.02
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.97
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.93
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.9
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	95.89
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.86
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.86
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	95.81
PRK08507	275	prephenate dehydrogenase; Validated	95.79
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.76
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.69
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.68
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.67
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.66
PTZ00117	319	malate dehydrogenase; Provisional	95.65
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.64
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	95.53
PLN02256	304	arogenate dehydrogenase	95.52
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.52
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.51
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	95.51
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.5
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	95.5
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.49
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	95.46
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	95.45
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.43
PRK08655	437	prephenate dehydrogenase; Provisional	95.42
PRK08324	681	short chain dehydrogenase; Validated	95.4
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.38
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.36
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.35
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.3
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.29
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.26
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	95.25
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.23
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.22
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.19
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.16
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.15
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.14
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.14
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.12
PRK12480	330	D-lactate dehydrogenase; Provisional	95.11
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.1
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.03
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	95.01
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.01
PRK15076	431	alpha-galactosidase; Provisional	94.99
PRK06940	275	short chain dehydrogenase; Provisional	94.98
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	94.93
PRK10669	558	putative cation:proton antiport protein; Provision	94.92
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	94.91
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	94.87
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.84
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.83
PLN02702	364	L-idonate 5-dehydrogenase	94.81
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.74
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	94.73
PRK09496	453	trkA potassium transporter peripheral membrane com	94.72
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	94.72
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.72
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.69
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.67
PRK06223	307	malate dehydrogenase; Reviewed	94.65
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.64
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	94.63
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.63
PRK09496	453	trkA potassium transporter peripheral membrane com	94.6
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	94.59
PRK06545	359	prephenate dehydrogenase; Validated	94.58
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.55
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	94.54
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.54
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	94.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.48
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.47
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.47
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	94.47
PRK05442	326	malate dehydrogenase; Provisional	94.44
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	94.4
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	94.35
PRK13771	334	putative alcohol dehydrogenase; Provisional	94.34
PLN02688	266	pyrroline-5-carboxylate reductase	94.33
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	94.32
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.3
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	94.29
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.26
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	94.26
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.25
COG4798	238	Predicted methyltransferase [General function pred	94.24
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	94.24
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.22
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	94.22
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	94.2
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	94.18
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	94.18
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.18
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.14
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	94.14
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.13
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	94.11
COG4301	321	Uncharacterized conserved protein [Function unknow	94.01
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.93
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	93.91
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.89
PLN02928	347	oxidoreductase family protein	93.87
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	93.83
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.83
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.83
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	93.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.83
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	93.79
PRK13243	333	glyoxylate reductase; Reviewed	93.78
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.75
PLN02712	667	arogenate dehydrogenase	93.73
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	93.71
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.68
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.68
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.61
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	93.6
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.58
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.58
PLN02712	667	arogenate dehydrogenase	93.56
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.55
PLN02602	350	lactate dehydrogenase	93.5
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.49
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	93.44
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.42
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.41
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	93.38
PRK08818	370	prephenate dehydrogenase; Provisional	93.38
COG1255	129	Uncharacterized protein conserved in archaea [Func	93.38
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	93.35
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	93.32
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	93.32
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	93.31
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.3
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.28
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.27
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	93.22
PRK07814	263	short chain dehydrogenase; Provisional	93.22
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.19
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	93.17
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.17
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.16
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.11
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.11
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.1
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	93.1
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	93.09
PRK09242	257	tropinone reductase; Provisional	93.07
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	93.05
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	93.04
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.0

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=100.00  E-value=1.2e-76  Score=541.36  Aligned_cols=269  Identities=51%  Similarity=0.822  Sum_probs=168.2

Q ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhhHHHHHH
Q 036061           13 IPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATF   92 (284)
Q Consensus        13 ~~~~~~i~~i~~~~~~~~~l~~l~p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~a~~   92 (284)
                      .++|.+|++|+++|++|++|+||+|||+||+||++||++|++++++|+++|++++++++++||++|++||+.||.|||+.
T Consensus         3 ~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~   82 (276)
T PF03059_consen    3 KEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR   82 (276)
T ss_dssp             ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             hcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHH
Q 036061           93 FAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVA  172 (284)
Q Consensus        93 l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~A  172 (284)
                      +++.++||++|+.||||+||++|+++|++++.......|+||+||||||+|+|+++||+++.+++.|+|||+||+|++.|
T Consensus        83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a  162 (276)
T PF03059_consen   83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA  162 (276)
T ss_dssp             HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred             HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999998777677899999999999999999998778899999999999999999


Q ss_pred             HHHHH-hcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCcc
Q 036061          173 RQIVS-SDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPV  251 (284)
Q Consensus       173 r~~~~-~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~  251 (284)
                      +++++ ..| ++++|+|+++|+.+...++.+||+||++++|||++++|.+++++++++|+||+++++|+++|+|+||||+
T Consensus       163 ~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~  241 (276)
T PF03059_consen  163 RRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV  241 (276)
T ss_dssp             HHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS--
T ss_pred             HHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC
Confidence            99999 567 7999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCcEEEEEecCCcceeeeEEEEeec
Q 036061          252 VEKHDLLDFELLSVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       252 v~~~dl~gfe~~~~~hP~~~v~nsvi~~r~~  282 (284)
                      ++++|+.||+++.++||+++|||||||+||+
T Consensus       242 vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~  272 (276)
T PF03059_consen  242 VDPEDLRGFEVLAVVHPTDEVINSVVFARKK  272 (276)
T ss_dssp             --TGGGTTEEEEEEE---TT---EEEEE---
T ss_pred             CChHHCCCeEEEEEECCCCCceeEEEEEEec
Confidence            9999999999999999999999999999995

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PLN03075 nicotianamine synthase; Provisional

Probab=100.00  E-value=4e-75  Score=536.04  Aligned_cols=274  Identities=60%  Similarity=0.949  Sum_probs=262.6

Q ss_pred             cCCCCcHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhhHH
Q 036061            9 NESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELE   88 (284)
Q Consensus         9 ~~~~~~~~~~i~~i~~~~~~~~~l~~l~p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~   88 (284)
                      .+..+++|.+|++|+++|++|++|++|+||++||+||++||++|++++++|++++++++|++|++|+++|++||+.||.|
T Consensus         2 ~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~   81 (296)
T PLN03075          2 EEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAH   81 (296)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061           89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus        89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      ||+.+++.++||++|+.||||+||++|.+.|...|..+...+|++|+||||||+|+|++++++++.++++|+|||+|+++
T Consensus        82 ~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~a  161 (296)
T PLN03075         82 FSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSA  161 (296)
T ss_pred             HHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHH
Confidence            99999999999999999999999999999999999888777999999999999999999999878999999999999999


Q ss_pred             HHHHHHHHHh-cCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061          169 NDVARQIVSS-DIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF  247 (284)
Q Consensus       169 i~~Ar~~~~~-~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~  247 (284)
                      ++.||+++++ .| +.++|+|+++|+.+....+++||+||++++++|++++|.++++++++.|+|||++++|++||+|+|
T Consensus       162 i~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~  240 (296)
T PLN03075        162 NDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAF  240 (296)
T ss_pred             HHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence            9999999975 77 789999999999987655678999999988999999999999999999999999999999999999


Q ss_pred             cCccCCCccCCCcEEEEEecCCcceeeeEEEEeecC
Q 036061          248 LYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPL  283 (284)
Q Consensus       248 lYp~v~~~dl~gfe~~~~~hP~~~v~nsvi~~r~~~  283 (284)
                      |||+|++++++|||++.++||+++|||||||+||+.
T Consensus       241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~  276 (296)
T PLN03075        241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG  276 (296)
T ss_pred             cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence            999999999999999999999999999999999963

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.78  E-value=2.2e-18  Score=135.80  Aligned_cols=108  Identities=21%  Similarity=0.365  Sum_probs=88.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      |+.+|||||||+ |..++.+++ ..++++|+++|+||++++.|++++.+.+ ..++|+|+++|+........+||+|+..
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEEC
Confidence            578999999997 566777777 4699999999999999999999997777 6899999999991122233579999987


Q ss_pred             c-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 A-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      . .. .+ +.+++.++++.+++.|+|||++++++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7 11 12 22678999999999999999999975

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.70  E-value=4.3e-16  Score=147.35  Aligned_cols=164  Identities=13%  Similarity=0.221  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHhhHhhhHHHHHHhcCC--CCcccccccCCCcchhhhhhHHHHHHHHhcCC-----CCCCEEEEec
Q 036061           66 EVQEMRESLIVLCGRAEGLLELEFATFFAKT--PQPLNNLNLFPYYGNYVKLANLEYRILDENGV-----VNPKKVAFVG  138 (284)
Q Consensus        66 ~~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~--~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~-----~~~~~VL~IG  138 (284)
                      ...++.++++..+.+....+|..|.+.+..+  +.+.      +.-+.-....++....+...+.     .++.+|||||
T Consensus        53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~------~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiG  126 (340)
T PLN02244         53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA------SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVG  126 (340)
T ss_pred             chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC------CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEec
Confidence            4456778889999888888888887655432  1100      0001112222333334444454     6789999999


Q ss_pred             cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHH
Q 036061          139 SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEE  218 (284)
Q Consensus       139 sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~  218 (284)
                      ||+ |..+..+++.  .|++|+|||+|+.+++.|+++++..| +.++++|+++|+.+.+...+.||+|+..... .+..+
T Consensus       127 CG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~-~h~~d  201 (340)
T PLN02244        127 CGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMESG-EHMPD  201 (340)
T ss_pred             CCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCch-hccCC
Confidence            997 5566778872  48999999999999999999999988 6789999999999887766789999865432 22367


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEe
Q 036061          219 KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       219 k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.++++++.+.|||||.|++.+
T Consensus       202 ~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        202 KRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEE
Confidence            8899999999999999998854

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=3.3e-16  Score=141.04  Aligned_cols=109  Identities=23%  Similarity=0.309  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      +..+|.+|||||||+ |.-|+.+++. .+.++|+++|+|+.|++.|++.+...| ... |+|++||++++|.+.+.||+|
T Consensus        48 ~~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~v  123 (238)
T COG2226          48 GIKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAV  123 (238)
T ss_pred             CCCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEE
Confidence            445899999999997 7888999984 448999999999999999999999988 455 999999999999999999999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++..+ -...++.++|++++|+|||||++++-.
T Consensus       124 t~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226         124 TISFGL-RNVTDIDKALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             Eeeehh-hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence            877643 123688999999999999999888855

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.67  E-value=2e-16  Score=139.92  Aligned_cols=107  Identities=18%  Similarity=0.371  Sum_probs=94.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      .++++||+|||| .|+|+++||+...++++|+++|+|++..+.|++++++.| ++++|+++.||+.++...      .+.
T Consensus        44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            578999999999 599999999855568999999999999999999999999 799999999999876542      246


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    .++.++++.+.+.|+|||++++.+.
T Consensus       122 fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  122 FDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             EEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             eeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccc
Confidence            9999999875    8899999999999999999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.67  E-value=3.9e-16  Score=138.85  Aligned_cols=108  Identities=17%  Similarity=0.371  Sum_probs=97.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecccccccc--CCCcc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEK--LGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~--~~~fD  204 (284)
                      ..++++||+||++ +|+|++|||.....++++|+||++|++.+.|++++++.| ++++|+++. +|+.+....  .+.||
T Consensus        57 ~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          57 LSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             hcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHHHHHHhccCCCcc
Confidence            3689999999998 699999999954448899999999999999999999999 799999999 599887775  35799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +||+++..    .++.++++.+.+.|+|||++++.+.
T Consensus       135 liFIDadK----~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         135 LVFIDADK----ADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeec
Confidence            99999885    8889999999999999999999984

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=3.3e-15  Score=130.86  Aligned_cols=106  Identities=20%  Similarity=0.314  Sum_probs=88.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||+ |..+++||+   .|++|+++|+|+++++.|+++++..| + .++++.++|+.+.+.+ +.||+|
T Consensus        27 ~~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I   99 (197)
T PRK11207         27 KVVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFI   99 (197)
T ss_pred             ccCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEE
Confidence            345678999999997 677899998   68999999999999999999999988 4 5699999998765543 469999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +..... ..+.++...+++.+.+.|+|||.+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            966443 346678899999999999999986553

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.66  E-value=4.3e-16  Score=140.24  Aligned_cols=110  Identities=16%  Similarity=0.216  Sum_probs=80.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||+ |..+..++++..++++|+++|+|++|++.|++.+...|.  .+|+|+++|+.+++.+.+.||+|
T Consensus        44 ~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v  120 (233)
T PF01209_consen   44 GLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAV  120 (233)
T ss_dssp             T--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEE
T ss_pred             CCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEE
Confidence            457889999999998 577788888556789999999999999999999999883  49999999999999888889999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++..+. +.+++.+.+++++|+|||||++++-+
T Consensus       121 ~~~fglr-n~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  121 TCSFGLR-NFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             EEES-GG-G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EHHhhHH-hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            9765441 23578889999999999999988755

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=2.1e-15  Score=136.45  Aligned_cols=127  Identities=16%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             CCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 036061          106 FPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEK  184 (284)
Q Consensus       106 fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~  184 (284)
                      -|+|++...++..-.    .....++.+|||||||+ |..+..+++. ..++++|+++|+|++|++.|++++...| ...
T Consensus        36 ~p~y~~~~~~~~~~~----~~~~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~  109 (247)
T PRK15451         36 VPGYSNIISMIGMLA----ERFVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT  109 (247)
T ss_pred             CCChHHHHHHHHHHH----HHhCCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCC
Confidence            477777666654322    22246778999999997 5555666653 2588999999999999999999999888 677


Q ss_pred             CeEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          185 RMKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       185 ~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++++++|+.+.+.  ..||+|++...+ .++..++.++++++++.|+|||.+++.+
T Consensus       110 ~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        110 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999987654  469998865433 4566778999999999999999999865

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.66  E-value=7.8e-16  Score=138.57  Aligned_cols=107  Identities=19%  Similarity=0.308  Sum_probs=94.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      .++++||+||||+ |++++++|+...++++|+++|+|+++++.|++++++.| ++++|+++.||+.+....      .+.
T Consensus        67 ~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         67 MNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             hCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            5789999999995 89999999855567899999999999999999999999 789999999999876442      247


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    +++.++++.+.+.|+|||++++.+.
T Consensus       145 fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        145 FDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             CCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            9999998774    7888999999999999999998774

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.65  E-value=1.4e-15  Score=127.09  Aligned_cols=110  Identities=22%  Similarity=0.355  Sum_probs=90.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      +.+.+|||+|||+ |..+..|++...++.+|+|+|+|+++++.|++.+++.| +. +++|+++|+.+++..+ +.||+|+
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence            4678999999997 56678888546789999999999999999999999999 45 8999999999955222 6899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      ..... ....+...+++.+.+.|++||.+++.+..
T Consensus        79 ~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            77543 22366778999999999999999998865

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.65  E-value=3.5e-15  Score=130.13  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +++.+|||||||+ |..++.+|+ ..++++|+++|+|+++++.|+++++..| +. +++|+++|+.+... .+.||+|+.
T Consensus        44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence            4589999999997 677788886 4688999999999999999999999999 54 49999999988665 457999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      .+.     .+...+++++++.|+|||.+++-.+.
T Consensus       119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        119 RAV-----ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ccc-----cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            653     45678999999999999999987643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.64  E-value=5.2e-15  Score=128.29  Aligned_cols=135  Identities=18%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||||||+ |..++.+|. ..++++|+++|+|+++++.+++++++.| + ++++++++|+.++. ..+.||+|+..
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence            478999999997 677788886 5678899999999999999999999998 4 46999999998864 34589999876


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEEEEEecCCcceee
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVIN  274 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~~~~~hP~~~v~n  274 (284)
                      + +    .+...+++.+.+.|+|||++++..+.....-+.-.++..-..||+.+.+---+.+.-|
T Consensus       117 ~-~----~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  176 (181)
T TIGR00138       117 A-L----ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGPDRH  176 (181)
T ss_pred             h-h----hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCCceE
Confidence            6 3    3455788999999999999998754322111111112223367887766433334333

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02476 O-methyltransferase

Probab=99.62  E-value=3.6e-15  Score=137.27  Aligned_cols=108  Identities=14%  Similarity=0.168  Sum_probs=96.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------C
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------G  201 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~  201 (284)
                      ..++++||+||+| .|++++++|+...++++|+++|+|+++.+.|++++++.| ++++|+++.||+.+.+..+      +
T Consensus       116 ~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~  193 (278)
T PLN02476        116 ILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGS  193 (278)
T ss_pred             hcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence            3678999999999 589999999855568899999999999999999999999 7899999999998866433      4


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+++..    .++.++++.+.+.|+|||++++.+.
T Consensus       194 ~FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        194 SYDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             CCCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence            79999999874    8899999999999999999999874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.62  E-value=1.4e-14  Score=126.66  Aligned_cols=105  Identities=18%  Similarity=0.251  Sum_probs=85.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||+ |..++.+|+   .|++|+++|+|+.|++.+++.++..| +  ++++.++|....+.+ +.||+|
T Consensus        27 ~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~I   98 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYDFI   98 (195)
T ss_pred             ccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCCEE
Confidence            345678999999996 778899998   68999999999999999999998888 3  488888887654332 469999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +..... ..+.++...+++.+.+.|+|||++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            865433 445678889999999999999985554

Part of a tellurite-reducing operon tehA and tehB

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.61  E-value=3.7e-15  Score=135.22  Aligned_cols=107  Identities=17%  Similarity=0.275  Sum_probs=96.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-------C
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-------G  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-------~  201 (284)
                      .++++||+||++ .|+|+++||+...++++|+++|++++..+.|++++++.| +.++|+++.||+.+....+       +
T Consensus        78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCC
Confidence            578999999998 699999999865678999999999999999999999999 7999999999998876543       4


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+++..    ..+..+++.+.+.|+|||+|++.+.
T Consensus       156 ~fD~iFiDadK----~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        156 TFDFIFVDADK----DNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             cccEEEecCCH----HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            79999999884    8889999999999999999999874

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=4.5e-15  Score=112.24  Aligned_cols=95  Identities=20%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             EEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccC
Q 036061          135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGM  214 (284)
Q Consensus       135 L~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~  214 (284)
                      ||||||+ |.++..++++  ++.+|+++|+|+++++.+++.....     +++++++|+.+++.+.+.||+|+......+
T Consensus         1 LdiG~G~-G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCGT-GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-TT-SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCcC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceee
Confidence            7999996 7888888882  7999999999999999999977654     456999999999888789999997765533


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          215 SKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       215 ~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      - +++.++++++.|.|||||++++
T Consensus        73 ~-~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 L-EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-cCHHHHHHHHHHHcCcCeEEeC
Confidence            2 7889999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.59  E-value=4.3e-14  Score=130.61  Aligned_cols=103  Identities=22%  Similarity=0.312  Sum_probs=86.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..++.+|+   .|.+|+++|+|+.|++.++++++..| +  ++++.++|+.+... .+.||+|+.
T Consensus       119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~  190 (287)
T PRK12335        119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS  190 (287)
T ss_pred             cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence            4567999999996 778899998   68999999999999999999999988 4  79999999865433 357999986


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .... .++.++...+++.+.+.|+|||++++-
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            6433 446678889999999999999996654

>TIGR00740 methyltransferase, putative

Probab=99.59  E-value=3.5e-14  Score=127.38  Aligned_cols=126  Identities=17%  Similarity=0.238  Sum_probs=96.6

Q ss_pred             CCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 036061          107 PYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKR  185 (284)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~  185 (284)
                      |+|.+....+..    +......++.+|||||||+ |..+..++++. .++++|+|+|+|+++++.|++.++..+ ...+
T Consensus        34 p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~  107 (239)
T TIGR00740        34 PGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP  107 (239)
T ss_pred             CCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCC
Confidence            555555444321    2222345778999999998 55666677632 378999999999999999999998877 5678


Q ss_pred             eEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          186 MKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       186 I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++|+++|+.+.+.  ..+|+|+....+ ..+.+++.++++++.+.|+|||.+++..
T Consensus       108 v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       108 VEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             eEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            9999999987654  468988765433 4456788999999999999999999975

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.58  E-value=5e-14  Score=112.11  Aligned_cols=106  Identities=14%  Similarity=0.158  Sum_probs=85.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-ccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-EKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-~~~~~fD~  205 (284)
                      ...++.+|+|+|||+ |..+..+++ ..++++|+++|+|+.+++.|+++++..+ + .+++++++|+.+.. .....||+
T Consensus        16 ~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~   91 (124)
T TIGR02469        16 RLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPEPDR   91 (124)
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCCCCE
Confidence            456678999999998 556677777 4667999999999999999999999988 3 47999999986533 22357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.....    ....++++.+.+.|+|||.+++..
T Consensus        92 v~~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        92 VFIGGSG----GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEECCcc----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            9976432    455689999999999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.58  E-value=2.3e-14  Score=131.00  Aligned_cols=112  Identities=23%  Similarity=0.342  Sum_probs=90.8

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++....+.++.+|||||||++ ..+..+|+  ..+++|+++|+|+.+++.|++....    .++++|+++|+.+.+.+.+
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~G-~~a~~la~--~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~  116 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGLG-GGCKYINE--KYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPEN  116 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCCC-hhhHHHHh--hcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCC
Confidence            334455688899999999974 55677776  2588999999999999999997643    2589999999987666556


Q ss_pred             CccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|+... +.+++.+++.++++++++.|||||.+++..
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            899999743 345666789999999999999999999865

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=5.6e-14  Score=123.76  Aligned_cols=112  Identities=21%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..+.++.+|||||||+ |+.+..+++...++++|+++|+|+++++.|++++.+.| +.++++++++|+.+.....+.||.
T Consensus        68 l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~~~~fD~  145 (205)
T PRK13944         68 IEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEKHAPFDA  145 (205)
T ss_pred             cCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCccCCCccE
Confidence            3457789999999997 56667777743346799999999999999999999999 677899999999875554568999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcccc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARA  246 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~  246 (284)
                      |++.....       .+.+.+.+.|+|||+|++-...+..+
T Consensus       146 Ii~~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~~~~  179 (205)
T PRK13944        146 IIVTAAAS-------TIPSALVRQLKDGGVLVIPVEEGVGQ  179 (205)
T ss_pred             EEEccCcc-------hhhHHHHHhcCcCcEEEEEEcCCCce
Confidence            99876541       23357889999999998865444334

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=3.8e-14  Score=129.46  Aligned_cols=111  Identities=12%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEeccccccccCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS--DIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ...++.+|||||||+ |..+..+++...+.++|+|+|+|++|++.|++....  .+ ..++++|+++|+.+++.+.+.||
T Consensus        70 ~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         70 GAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCEe
Confidence            456789999999998 556677877334567999999999999999987542  22 23689999999998887667899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|++...++ ..+++.+++++++|.|||||.+++.+
T Consensus       148 ~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        148 AITMGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEEEecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            998764432 22578889999999999999998865

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.57  E-value=5.8e-14  Score=124.80  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061           89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus        89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      |-++-.+++.||..-+..|.+..+..          +....++.|||++|||. |..+++||+   .|.+|||+|+|+.|
T Consensus         3 Wd~ry~~~~~~w~~~~p~~~l~~~~~----------~l~~~~~~rvLd~GCG~-G~da~~LA~---~G~~V~gvD~S~~A   68 (213)
T TIGR03840         3 WHERWQEGQIGFHQSEVNPLLVKHWP----------ALGLPAGARVFVPLCGK-SLDLAWLAE---QGHRVLGVELSEIA   68 (213)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHHH----------hhCCCCCCeEEEeCCCc-hhHHHHHHh---CCCeEEEEeCCHHH
Confidence            33444455678865455555433322          11224667999999995 899999998   89999999999999


Q ss_pred             HHHHHHHHHhcCC-------------CCCCeEEEEecccccccc-CCCccEEEecc-cccCChHHHHHHHHHHHhhcCCC
Q 036061          169 NDVARQIVSSDIE-------------FEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDG  233 (284)
Q Consensus       169 i~~Ar~~~~~~G~-------------l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pG  233 (284)
                      ++.+.+   +.|.             -..+|+|.++|+.++... .+.||.||-.. +++.+++.+.++++.+.+.||||
T Consensus        69 i~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        69 VEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             HHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence            998644   2221             024799999999887654 34699998654 45778899999999999999999


Q ss_pred             cEEEEEe
Q 036061          234 GVLLVRS  240 (284)
Q Consensus       234 g~lv~r~  240 (284)
                      |++++.+
T Consensus       146 G~~ll~~  152 (213)
T TIGR03840       146 ARQLLIT  152 (213)
T ss_pred             CeEEEEE
Confidence            9866654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.57  E-value=3e-14  Score=129.17  Aligned_cols=107  Identities=18%  Similarity=0.270  Sum_probs=88.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V  206 (284)
                      ..++.+|||||||+ |..+..+|+   .|.+|+++|+|+++++.|++.+...| +..+++|+++|+.++.. ..+.||+|
T Consensus        42 ~~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V  116 (255)
T PRK11036         42 PPRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLI  116 (255)
T ss_pred             CCCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEE
Confidence            36678999999997 677788888   58999999999999999999999998 67899999999987643 33579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...... .++..++++.+.+.|||||.+++-.
T Consensus       117 ~~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        117 LFHAVLEW-VADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             EehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            97654321 2455689999999999999998753

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.57  E-value=7.3e-14  Score=124.10  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=91.6

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ......++++|||+|||+ |..+..+++...++++|+|+|+|+++++.|++.+.+.+ + ++++++++|+.+.+...+.|
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCc
Confidence            344557789999999997 55667788744577899999999999999999998887 4 68999999998876555689


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|++...+.. .++..++++++.+.|+|||.+++.+
T Consensus       116 D~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       116 DYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             cEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            99987654322 2556789999999999999998865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.55  E-value=3.8e-14  Score=130.49  Aligned_cols=112  Identities=18%  Similarity=0.302  Sum_probs=85.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++.+++++++.+|||||||- |-.++.+|++  .|++|+||.+|++..+.|++.+++.| +++++++..+|..+++.   
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~~---  126 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLPG---  126 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG------
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccCC---
Confidence            34455679999999999995 6677889983  49999999999999999999999999 89999999999887554   


Q ss_pred             CccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||.|+.--.+ ++..+.+..+++.+.+.|+|||++++..
T Consensus       127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            89998855444 6666888999999999999999998854

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.55  E-value=6.3e-14  Score=127.95  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..++.+++...++.+|+++|+++++++.|+++.+..|.  ++++|+.+|+.+++...+.||+|+
T Consensus        75 ~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi  151 (272)
T PRK11873         75 LKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVII  151 (272)
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEE
Confidence            46889999999998 777777777445667899999999999999999999883  589999999988765556899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .....++ ..++.++++++.+.|||||++++.+
T Consensus       152 ~~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        152 SNCVINL-SPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EcCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            7654332 2567789999999999999999865

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=9.4e-14  Score=123.09  Aligned_cols=109  Identities=19%  Similarity=0.189  Sum_probs=86.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +....+.++.+|||||||+ |+.+..+|+...++++|+++|+++++++.|++++++.|.  .+++++++|+.+.....+.
T Consensus        69 ~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~  145 (212)
T PRK13942         69 CELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAP  145 (212)
T ss_pred             HHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCC
Confidence            3344567899999999997 566677887444568999999999999999999999984  5899999999765555568


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|++.+.+       .++.+.+.+.|||||++++-..
T Consensus       146 fD~I~~~~~~-------~~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        146 YDRIYVTAAG-------PDIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             cCEEEECCCc-------ccchHHHHHhhCCCcEEEEEEc
Confidence            9999987654       1234567789999999988653

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.54  E-value=5.2e-14  Score=132.34  Aligned_cols=107  Identities=12%  Similarity=0.197  Sum_probs=88.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..||+   .|++|+|||+++++++.|++.++..+ ...+++|+++|+.+++...+.||+|+.
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence            4667999999997 556778887   78999999999999999999877666 457899999999887765568999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ...+. +..+...+++++.+.|||||.+++.+.
T Consensus       205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            65431 224667899999999999999998764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.54  E-value=1.2e-13  Score=122.23  Aligned_cols=107  Identities=20%  Similarity=0.181  Sum_probs=85.6

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .+.+.++.+|||||||+ |+.+..||+...++++|+++|+|+++++.|++++++.| + ++++++++|+.+.......||
T Consensus        72 ~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        72 LLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             HhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcccCCCC
Confidence            34568889999999997 56667788743446789999999999999999999999 4 689999999987554446799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++...       ..+.+.+.+.|+|||++++-..
T Consensus       149 ~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       149 RIYVTAAG-------PKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             EEEEcCCc-------ccccHHHHHhcCcCcEEEEEEc
Confidence            99977543       2345678899999999988553

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.53  E-value=2.5e-14  Score=127.89  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=91.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -++.+||||||| +|.=+..||+   .|+.|||+|+++++++.|+..+...|.   .+++.++.+.++...-++||+|+.
T Consensus        58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEE
Confidence            478999999999 7888999999   889999999999999999999999984   589999999988776578999987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .-.+ .+.++...++..+.+.+||||.+++.+-
T Consensus       131 mEVl-EHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         131 MEVL-EHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             hhHH-HccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence            6544 1235667799999999999999999774

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.52  E-value=1.9e-13  Score=119.49  Aligned_cols=120  Identities=16%  Similarity=0.202  Sum_probs=93.4

Q ss_pred             hhHHHHHHH--HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          115 LANLEYRIL--DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       115 l~~~E~~~l--~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      +.+.|..++  .+....++.+|||+|||+ |.-++.+|+...++.+|+++|+|+++++.|+++++..| +.++++++++|
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d  100 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGE  100 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEec
Confidence            344444333  344568889999999998 55566676644567899999999999999999999999 56899999999


Q ss_pred             cccccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..... ..||.||+....    ....++++.+.+.|+|||++++..
T Consensus       101 ~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        101 APEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             hhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            97754433 479999975432    455789999999999999998854

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.52  E-value=4.4e-14  Score=110.17  Aligned_cols=97  Identities=22%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             EEEeccCCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec-c
Q 036061          134 VAFVGSGPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA-A  210 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a-a  210 (284)
                      |||+|||++ .....+++...  +..+++++|+|++|++.|++.....|.   +++|+++|+.+++...+.||+|+.. .
T Consensus         1 ILDlgcG~G-~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTG-RVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTS-HHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCc-HHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            799999984 55566666331  348999999999999999999998873   8999999999988777799999984 3


Q ss_pred             -cccCChHHHHHHHHHHHhhcCCCc
Q 036061          211 -LVGMSKEEKVKIIKHIRKYMKDGG  234 (284)
Q Consensus       211 -~v~~~~~~k~~il~~l~~~l~pGg  234 (284)
                       +...++++..++++++.++++|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence             336788999999999999999998

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.52  E-value=3.3e-13  Score=119.37  Aligned_cols=151  Identities=19%  Similarity=0.257  Sum_probs=109.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+||+||||+ |..+..+++. .+ ..+|+++|+++.+++.|++.+...+ +..+++|+.+|+.+.+...+.||+
T Consensus        48 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~  124 (239)
T PRK00216         48 GVRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDA  124 (239)
T ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccE
Confidence            345678999999998 4556667763 33 5899999999999999999988766 567899999999876655567999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc--cc---c----c---c--------------C--------cc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG--AR---A----F---L--------------Y--------PV  251 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g--lr---~----~---l--------------Y--------p~  251 (284)
                      |+....++ ...+...+++.+.+.|+|||.+++.....  ..   .    +   .              |        +.
T Consensus       125 I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (239)
T PRK00216        125 VTIAFGLR-NVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF  203 (239)
T ss_pred             EEEecccc-cCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence            98754432 22566789999999999999988754210  00   0    0   0              0        00


Q ss_pred             CCCc---cC---CCcEEEEEecCCcceeeeEEEEeec
Q 036061          252 VEKH---DL---LDFELLSVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       252 v~~~---dl---~gfe~~~~~hP~~~v~nsvi~~r~~  282 (284)
                      ...+   ++   .||++....+-.+.+. ++++||||
T Consensus       204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~-~~~~~~~~  239 (239)
T PRK00216        204 PDQEELAAMLEEAGFERVRYRNLTGGIV-ALHVGYKP  239 (239)
T ss_pred             CCHHHHHHHHHhCCCceeeeeeeecCcE-EEEEEecC
Confidence            1111   11   7999988888777888 69999986

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.52  E-value=2.5e-13  Score=121.18  Aligned_cols=128  Identities=13%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             cCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061           94 AKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR  173 (284)
Q Consensus        94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar  173 (284)
                      .+++.||.--+.+|++..|...          ....++.|||++|||. |..+++||+   .|++|+|||+|+.|++.+.
T Consensus        11 ~~~~~~~~~~~p~~~L~~~~~~----------~~~~~~~rvL~~gCG~-G~da~~LA~---~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         11 AENQIGFHQEEVNPLLQKYWPA----------LALPAGSRVLVPLCGK-SLDMLWLAE---QGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             cCCCCCCCCCCCCHHHHHHHHh----------hCCCCCCeEEEeCCCC-hHhHHHHHh---CCCeEEEEccCHHHHHHHH
Confidence            3345566555666765544332          1224567999999995 899999998   8999999999999999875


Q ss_pred             HHHHhcCC-------------CCCCeEEEEecccccccc-CCCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          174 QIVSSDIE-------------FEKRMKFVTCDIMQVKEK-LGEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       174 ~~~~~~G~-------------l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +   +.|.             ...+|++.++|+.++... .+.||.||-.+. ...+++.+.++++.+.+.|+|||++++
T Consensus        77 ~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         77 A---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             H---HcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            3   3321             136899999999987553 357999995543 466889999999999999999986444

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.51  E-value=4.3e-13  Score=117.36  Aligned_cols=107  Identities=19%  Similarity=0.289  Sum_probs=85.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.++||+|||. |-.|++||+   .|..|+++|+|+.+++.+++++++.++   .|+..+.|+.+...+ .+||+|
T Consensus        27 ~~~~~g~~LDlgcG~-GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I   98 (192)
T PF03848_consen   27 PLLKPGKALDLGCGE-GRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFI   98 (192)
T ss_dssp             TTS-SSEEEEES-TT-SHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred             hhcCCCcEEEcCCCC-cHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEE
Confidence            345789999999995 889999999   899999999999999999999999884   499999999776553 579998


Q ss_pred             Eecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +... +-..+.+...++++.+.+.++|||.+++...
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            7432 2255678889999999999999999888664

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=3e-13  Score=122.58  Aligned_cols=106  Identities=17%  Similarity=0.211  Sum_probs=84.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++......++.+|||||||++ ..+..+++ ..++++|+|+|+|+.+++.|++.         +++|+++|+.++. ..+
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G-~~~~~l~~-~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPG-NLTRYLAR-RWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCC
Confidence            344445678899999999985 55667777 35789999999999999999761         4789999998764 346


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|+....+++- .++.++++++.+.|||||.+++..
T Consensus        89 ~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         89 DTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             CceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEc
Confidence            89999987655332 466789999999999999998853

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.48  E-value=5.9e-13  Score=115.16  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|++++++.+ + .+++++++|+.. .. .+.||+
T Consensus        27 l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~-~~~~D~  100 (187)
T PRK08287         27 LELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-EL-PGKADA  100 (187)
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hc-CcCCCE
Confidence            3456889999999997 566777777 4678999999999999999999999988 4 479999999743 11 247999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||++...    ....++++.+.+.|+|||++++..
T Consensus       101 v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        101 IFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             EEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            9976543    334578999999999999998854

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.48  E-value=3.8e-13  Score=115.09  Aligned_cols=106  Identities=22%  Similarity=0.343  Sum_probs=83.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||+|||+ |.-++.+++ ..+..+|+++|+|+.|++.|+++++..+ +++ ++++.+|..+... ...||+|+.+
T Consensus        31 ~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE-
T ss_pred             cCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEEc
Confidence            778999999998 555677777 5778889999999999999999999999 565 9999999976443 4689999988


Q ss_pred             ccccCCh----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSK----EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~----~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-.....    ....+++++..++|+|||.+++-.
T Consensus       106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            6431111    246889999999999999885433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.47  E-value=9.4e-13  Score=113.97  Aligned_cols=119  Identities=19%  Similarity=0.167  Sum_probs=100.0

Q ss_pred             hhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 036061          113 VKLANLEYRILD--ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT  190 (284)
Q Consensus       113 ~~l~~~E~~~l~--~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~  190 (284)
                      .++.+.|..++.  +..+.++++++|||||++.+| +-+|. ..|.++|++||.|+++++..++|++++|.  ++++++.
T Consensus        15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~   90 (187)
T COG2242          15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVE   90 (187)
T ss_pred             CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEe
Confidence            346677766543  345799999999999997776 44553 57999999999999999999999999995  8999999


Q ss_pred             eccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          191 CDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       191 ~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+-+.+.++.+||.||+...     ..-..+++.++.+|+|||++|+.-
T Consensus        91 g~Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242          91 GDAPEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             ccchHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence            999888777778999998755     455689999999999999999965

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=5e-13  Score=131.30  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             HHHHHHhc-CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          119 EYRILDEN-GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       119 E~~~l~~~-~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      +.+.+.+. ...++.+|||||||+ |..++.+|+  ..+++|+|+|+|+++++.|+++..  + ...+++|+++|+.+.+
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~--~~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~  327 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGI-GGGDFYMAE--NFDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKT  327 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccC-CHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCC
Confidence            33433333 456788999999998 456678887  348899999999999999999775  3 3468999999998766


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+.||+|+....+. +..++.++++++++.|+|||.+++.+
T Consensus       328 ~~~~~fD~I~s~~~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        328 YPDNSFDVIYSRDTIL-HIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCCCCEEEEEECCccc-ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            5456799999764431 22567899999999999999999875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=1.1e-12  Score=122.65  Aligned_cols=109  Identities=20%  Similarity=0.288  Sum_probs=86.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +.+|||+|||+ |.-++.+|+ ..++++|+++|+|++|++.|+++++..| +.++|+|+++|+.+... .+.||+|+.+.
T Consensus       134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP  209 (307)
T PRK11805        134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP  209 (307)
T ss_pred             CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence            37999999997 566677877 4678999999999999999999999999 67889999999865332 24699999763


Q ss_pred             -cccC------C-----------------hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          211 -LVGM------S-----------------KEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       211 -~v~~------~-----------------~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                       +++.      .                 .+...++++.+.++|+|||.+++..++.
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence             2210      0                 1234688999999999999999987644

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=5.9e-13  Score=122.40  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=95.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +.++++.+|++|||||||- |.+++++|+  ..|++|+|+++|++..+.|++.+++.| ++.+|+++..|-.++..   .
T Consensus        65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~--~y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~e---~  137 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAE--EYGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFEE---P  137 (283)
T ss_pred             HHhcCCCCCCEEEEeCCCh-hHHHHHHHH--HcCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccccccc---c
Confidence            3455789999999999996 667899998  359999999999999999999999999 78999999999876554   4


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||-|+..... ++..+....+++.+.+.|+|||++++.+
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            9999855433 4455778999999999999999999987

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.47  E-value=3.2e-13  Score=118.79  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=84.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-cccc--ccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVK--EKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~--~~~~~fD~  205 (284)
                      .++.+|||||||++ ..+..+|+ ..++.+|+++|+|+++++.|++.++..+ + .+++|+++|+ ..++  .+.+.||.
T Consensus        39 ~~~~~VLDiGcGtG-~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         39 NDAPIHLEIGFGKG-EFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCCeEEEEccCCC-HHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence            36789999999985 55566776 4678899999999999999999999888 4 6799999999 5544  23457999


Q ss_pred             EEecccccCCh-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++.....+..       .....+++++++.|+|||.+++.+
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            98653221111       124679999999999999999876

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.46  E-value=2.1e-13  Score=108.18  Aligned_cols=106  Identities=19%  Similarity=0.289  Sum_probs=83.9

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V~~  208 (284)
                      |.+|||+|||. |..++.+++. . ..+++++|+||.+++.|++++...+ +.++++++++|..+..  ...+.||+|+.
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence            46999999996 6677777762 3 6999999999999999999999999 7889999999999876  34467999998


Q ss_pred             ccccc-C-Ch-----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVG-M-SK-----EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~-~-~~-----~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.--+ . ..     .....+++++.+.|+|||.+++-.
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            86321 1 11     124689999999999999998754

...

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.46  E-value=1.2e-12  Score=121.61  Aligned_cols=108  Identities=21%  Similarity=0.273  Sum_probs=89.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |.-++.+++ ..|+.+++++|+ |.+++.|++++++.| +.++|+++.+|..+.+  +..+|+|
T Consensus       146 ~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~--~~~~D~v  219 (306)
T TIGR02716       146 KLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YPEADAV  219 (306)
T ss_pred             CCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCCC--CCCCCEE
Confidence            346778999999998 566677777 478899999998 799999999999999 7899999999987533  3458999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.... .++.+...++++++++.|+|||++++-+
T Consensus       220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            876644 4565666899999999999999998875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03438 probable methyltransferase

Probab=99.45  E-value=2.8e-12  Score=119.42  Aligned_cols=164  Identities=18%  Similarity=0.227  Sum_probs=107.0

Q ss_pred             hHHHHHHHHhcC------CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061          116 ANLEYRILDENG------VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       116 ~~~E~~~l~~~~------~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~  189 (284)
                      .+.|.+.|.+..      +.++.+|||+|||++-.|...+.. ...+.+|+++|+|++|++.|++.+.+.. ...+|.++
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~-l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i  120 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDA-LRQPARYVPIDISADALKESAAALAADY-PQLEVHGI  120 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHh-hccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEE
Confidence            666666665542      356789999999986666554433 2227899999999999999999876643 23478899


Q ss_pred             EeccccccccCCCc----c-EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe--cCccccccCccCCCc------
Q 036061          190 TCDIMQVKEKLGEY----D-CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS--AKGARAFLYPVVEKH------  255 (284)
Q Consensus       190 ~~D~~~~~~~~~~f----D-~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~--~~glr~~lYp~v~~~------  255 (284)
                      ++|..+.......+    + ++|+.+.+ .++.++..++++++++.|+|||.+++..  .+......+-+.++.      
T Consensus       121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~F  200 (301)
T TIGR03438       121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAF  200 (301)
T ss_pred             EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHhhcCchhhHHHH
Confidence            99987633222233    2 34444444 4577888999999999999999998744  122111222222221      


Q ss_pred             ----------------cCCCcEEEEEecCCcceeeeEEEEee
Q 036061          256 ----------------DLLDFELLSVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       256 ----------------dl~gfe~~~~~hP~~~v~nsvi~~r~  281 (284)
                                      +...|+-.....|....+..-+.+++
T Consensus       201 ~~N~L~~~n~~l~~~f~~~~~~~~~~~~~~~~~ie~~l~~~~  242 (301)
T TIGR03438       201 NLNLLRRLNRELGGDFDPDAFRHRAFYNEERSRIEMHLVSRR  242 (301)
T ss_pred             HHHHHHHHHHHhccCCChHHcEEEEEEcCCcCeEEEEEEeCC
Confidence                            11347776777777766666666644

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.45  E-value=1.4e-12  Score=116.81  Aligned_cols=138  Identities=7%  Similarity=0.073  Sum_probs=103.5

Q ss_pred             HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061           89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus        89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      |-++-.+++.+|..-+..|++..|..          +....++.|||..|||. |..+++||+   .|.+|+|+|+|+.|
T Consensus        12 W~~rw~~~~~~f~~~~pnp~L~~~~~----------~l~~~~~~rvLvPgCGk-g~D~~~LA~---~G~~V~GvDlS~~A   77 (226)
T PRK13256         12 WLDRWQNDDVGFCQESPNEFLVKHFS----------KLNINDSSVCLIPMCGC-SIDMLFFLS---KGVKVIGIELSEKA   77 (226)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHHH----------hcCCCCCCeEEEeCCCC-hHHHHHHHh---CCCcEEEEecCHHH
Confidence            44444456777876667777544421          11334668999999995 899999999   89999999999999


Q ss_pred             HHHHHHHHH------hcC----CCCCCeEEEEeccccccc---cCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCc
Q 036061          169 NDVARQIVS------SDI----EFEKRMKFVTCDIMQVKE---KLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGG  234 (284)
Q Consensus       169 i~~Ar~~~~------~~G----~l~~~I~f~~~D~~~~~~---~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg  234 (284)
                      ++.+.+-..      +.+    .-..+|++.+||..++..   ..+.||.|+-.+ ++.++++.+.++.+++.+.|+|||
T Consensus        78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg  157 (226)
T PRK13256         78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT  157 (226)
T ss_pred             HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence            999866210      000    012489999999998753   235799999544 568889999999999999999999


Q ss_pred             EEEEEe
Q 036061          235 VLLVRS  240 (284)
Q Consensus       235 ~lv~r~  240 (284)
                      .+++-+
T Consensus       158 ~llll~  163 (226)
T PRK13256        158 QILLLV  163 (226)
T ss_pred             EEEEEE
Confidence            887765

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.45  E-value=8e-13  Score=116.92  Aligned_cols=138  Identities=18%  Similarity=0.262  Sum_probs=99.9

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      ++|||||||.+ ..+..+++ ..++++|+|+|+|+++++.|++.+...| +.++++|+.+|..+.+.+ +.||+|+....
T Consensus         1 ~~vLDiGcG~G-~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYG-SDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence            48999999975 55677777 4577999999999999999999999999 788999999998654332 47999986543


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEEecCc-ccc------ccCccCCCcc----C--CCcEEEEEecCCcceee
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG-ARA------FLYPVVEKHD----L--LDFELLSVFHPTNEVIN  274 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g-lr~------~lYp~v~~~d----l--~gfe~~~~~hP~~~v~n  274 (284)
                      .+. ..++..+++.+.+.|+|||.+++.+... ...      ...+.....+    +  .||++......+.++.+
T Consensus        77 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~  151 (224)
T smart00828       77 IHH-IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN  151 (224)
T ss_pred             HHh-CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence            321 2567899999999999999999865310 000      0000111111    1  68999887776665544

>PRK04457 spermidine synthase; Provisional

Probab=99.44  E-value=5.7e-13  Score=121.92  Aligned_cols=147  Identities=17%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      .++++||+||||. |..+.++++ ..++++|+++|+||++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            5678999999995 677777776 5789999999999999999999887655 3579999999998765433 4799999


Q ss_pred             ecccc--cCChH-HHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccC-CCcEEEEEecCCcceeeeEEEEee
Q 036061          208 LAALV--GMSKE-EKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDL-LDFELLSVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       208 ~aa~v--~~~~~-~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl-~gfe~~~~~hP~~~v~nsvi~~r~  281 (284)
                      +++.-  +++.. ...++++.+.+.|+|||++++.-...  .-.++.. ...+ .-|.-....-|..+-.|.++++.+
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~  216 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFK  216 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence            88653  11111 13689999999999999999853211  0011110 0111 235422223354444588888865

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.44  E-value=1.8e-12  Score=112.96  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=89.4

Q ss_pred             hhHHHHHH--HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          115 LANLEYRI--LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       115 l~~~E~~~--l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      +.+.|...  +......++.+|||+|||++. .++.+|+ ..++++|+++|+|+++++.|++++++.| + ++++++++|
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d   98 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGT-IPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGS   98 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECc
Confidence            44445443  223345678999999999854 5566776 4578999999999999999999999998 4 579999999


Q ss_pred             cccccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          193 IMQVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       193 ~~~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+..... ..+|.+++...     .+..++++.+.+.|+|||.+++...
T Consensus        99 ~~~~~~~~~~~~d~v~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         99 APECLAQLAPAPDRVCIEGG-----RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             hHHHHhhCCCCCCEEEEECC-----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            87643333 34788776532     3456899999999999999998763

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.2e-12  Score=115.45  Aligned_cols=125  Identities=18%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061          110 GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~  189 (284)
                      ..|..--.+...++....++++.+||+||||. |+.+..||+   -..+|++||++++-.+.|+++++.+| +. +|.++
T Consensus        52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~---l~~~V~siEr~~~L~~~A~~~L~~lg-~~-nV~v~  125 (209)
T COG2518          52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLAR---LVGRVVSIERIEELAEQARRNLETLG-YE-NVTVR  125 (209)
T ss_pred             CceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHH---HhCeEEEEEEcHHHHHHHHHHHHHcC-CC-ceEEE
Confidence            44444445555555555789999999999996 788899999   44599999999999999999999999 44 49999


Q ss_pred             EeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061          190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF  247 (284)
Q Consensus       190 ~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~  247 (284)
                      ++|+..--...+.||.|++.+.+.       .+-+.+.+.|++||++++--+.+..+.
T Consensus       126 ~gDG~~G~~~~aPyD~I~Vtaaa~-------~vP~~Ll~QL~~gGrlv~PvG~~~~q~  176 (209)
T COG2518         126 HGDGSKGWPEEAPYDRIIVTAAAP-------EVPEALLDQLKPGGRLVIPVGSGPAQR  176 (209)
T ss_pred             ECCcccCCCCCCCcCEEEEeeccC-------CCCHHHHHhcccCCEEEEEEccCCcEE
Confidence            999987655667899999888762       122467778999999999776444443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=1.5e-12  Score=117.38  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||++ ..+..+++   .|.+|+++|+|+++++.|++...       ..+|+++|+.+++...+.||+|+.
T Consensus        41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s  109 (251)
T PRK10258         41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWS  109 (251)
T ss_pred             cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEE
Confidence            46789999999985 44566766   68999999999999999988531       357899999887765567999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+.+. .+..+++.++.+.|+|||.+++.+
T Consensus       110 ~~~l~~~-~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWC-GNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             Cchhhhc-CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            6554332 456789999999999999999876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.43  E-value=4.8e-13  Score=118.64  Aligned_cols=113  Identities=18%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      -..++....+.++.+||+||||+ |+.+..||+...+...|++||++++.++.|+++++++|.  .+|+++++|+.....
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhccc
Confidence            34444455678999999999997 788888988445667899999999999999999999994  589999999987555


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+.||.|++.+.+.       ++-..+.+.|++||++++--.
T Consensus       138 ~~apfD~I~v~~a~~-------~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVP-------EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GG-SEEEEEESSBBS-------S--HHHHHTEEEEEEEEEEES
T ss_pred             cCCCcCEEEEeeccc-------hHHHHHHHhcCCCcEEEEEEc
Confidence            556899999887761       233567778999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.43  E-value=1e-12  Score=114.77  Aligned_cols=109  Identities=18%  Similarity=0.194  Sum_probs=86.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~  205 (284)
                      ..+.+|||||||+ |..+..+|+ ..|++.|+|+|+++++++.|++.++..| + .+++|+++|+.+++.   +.+.+|.
T Consensus        15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence            4567999999997 566677777 4689999999999999999999999988 4 489999999987542   2246999


Q ss_pred             EEecccccCChHH-------HHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEE-------KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~-------k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |++..-..+.+..       ..++++.+++.|||||.|.+.+.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            9876433332221       15799999999999999998773

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.43  E-value=5.1e-12  Score=116.90  Aligned_cols=110  Identities=20%  Similarity=0.271  Sum_probs=87.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.. ....||+|+.
T Consensus       120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~  195 (284)
T TIGR03533       120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS  195 (284)
T ss_pred             CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence            4568999999997 566777887 4678999999999999999999999999 6789999999986533 2246999997


Q ss_pred             cc-ccc------CC-----------------hHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          209 AA-LVG------MS-----------------KEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       209 aa-~v~------~~-----------------~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +. ++.      +.                 .+...++++.+.++|+|||++++..++
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            63 110      00                 023467899999999999999998764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.42  E-value=1.9e-12  Score=117.12  Aligned_cols=107  Identities=22%  Similarity=0.323  Sum_probs=84.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +......++.+|||||||++ ..+..+++ ..++++|+|+|+|+++++.|++..       .+++|+.+|+.++.. ...
T Consensus        24 l~~~~~~~~~~vLDiGcG~G-~~~~~la~-~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~-~~~   93 (258)
T PRK01683         24 LARVPLENPRYVVDLGCGPG-NSTELLVE-RWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQP-PQA   93 (258)
T ss_pred             HhhCCCcCCCEEEEEcccCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCC-CCC
Confidence            33445577899999999985 55567776 357899999999999999999852       368999999976543 348


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+.....++- .++.++++++.+.|+|||.+++..
T Consensus        94 fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ccEEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEEC
Confidence            9999977655332 456789999999999999999864

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.42  E-value=1.9e-12  Score=116.56  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCC------cEEEEEeCChHHHHHHHHHHHhcCCCCCC--eEEEEeccccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS------THFDNFDIDEAANDVARQIVSSDIEFEKR--MKFVTCDIMQV  196 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g------~~V~~iDid~~ai~~Ar~~~~~~G~l~~~--I~f~~~D~~~~  196 (284)
                      +.++..+.++||++||+ |..|..+.++ ...      .+|+..||+|++++.+++...+.+ +.++  +.|+++|+.++
T Consensus        95 ~L~p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   95 KLGPGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDL  171 (296)
T ss_pred             ccCCCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccC
Confidence            44567889999999997 7888888773 333      899999999999999999998877 5555  99999999999


Q ss_pred             cccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++...||...++..+ .+  .+..+.+++.+|+|||||++.+-.
T Consensus       172 pFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  172 PFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998899998877655 33  456779999999999999988644

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.42  E-value=2.1e-12  Score=119.22  Aligned_cols=108  Identities=18%  Similarity=0.253  Sum_probs=86.0

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc-
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-  210 (284)
                      .+|||+|||+ |.-++.+++ ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+... ..+||+|+.+. 
T Consensus       116 ~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~~-~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPLA-GQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccCc-CCCccEEEECCC
Confidence            7999999997 566777887 4678999999999999999999999999 67789999999876332 23799998763 


Q ss_pred             cccC-------------C----------hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          211 LVGM-------------S----------KEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       211 ~v~~-------------~----------~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ++..             +          .....++++++.++|+|||.+++..++.
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            1110             0          0245789999999999999999988643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK08317 hypothetical protein; Provisional

Probab=99.41  E-value=3.7e-12  Score=112.10  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||+|||+ |..+..++++..++++|+++|+|+.+++.|++.....   ..+++|.++|+.+.+...+.||
T Consensus        14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence            34567889999999998 5566777774336789999999999999999984333   3589999999987665556899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+...... ...+...+++++.+.|+|||.+++..
T Consensus        90 ~v~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQ-HLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEechhh-ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            998765431 22567789999999999999998765

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.41  E-value=6.9e-13  Score=116.91  Aligned_cols=116  Identities=19%  Similarity=0.261  Sum_probs=94.5

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 036061          114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI  193 (284)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~  193 (284)
                      .-.+.-.+++.+.....+.+|.|+|||| |-++-+|++ ..|+++|+|||-|++|++.|++   ++.    +.+|..+|+
T Consensus        14 eRtRPa~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~-RwP~A~i~GiDsS~~Mla~Aa~---rlp----~~~f~~aDl   84 (257)
T COG4106          14 ERTRPARDLLARVPLERPRRVVDLGCGP-GNSTELLAR-RWPDAVITGIDSSPAMLAKAAQ---RLP----DATFEEADL   84 (257)
T ss_pred             hccCcHHHHHhhCCccccceeeecCCCC-CHHHHHHHH-hCCCCeEeeccCCHHHHHHHHH---hCC----CCceecccH
Confidence            3344456677777889999999999999 566666777 5899999999999999999977   544    689999999


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++..+ ..+|++|.++...|- ++-.++|.++...|+|||+|.+.-
T Consensus        85 ~~w~p~-~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106          85 RTWKPE-QPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             hhcCCC-Cccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEEEC
Confidence            987754 479999987754443 566789999999999999999954

>PRK06922 hypothetical protein; Provisional

Probab=99.41  E-value=4.5e-12  Score=127.69  Aligned_cols=107  Identities=15%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V  206 (284)
                      .++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+.|++.|++.....|   .+++++++|+.+++  ...+.||+|
T Consensus       417 ~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvV  491 (677)
T PRK06922        417 IKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTI  491 (677)
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEE
Confidence            4688999999998 555666776 4689999999999999999999876655   37899999998765  334579999


Q ss_pred             Eeccccc------------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVG------------MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~------------~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++...+            ++.++..++++++.+.|||||.+++.+
T Consensus       492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            8764332            124577899999999999999999976

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.40  E-value=7.2e-12  Score=109.63  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=83.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++.+|||+|||++ ..+..+++. .+. .+++++|+++.+++.+++... .   ..+++++++|+.+.+...+.||+|
T Consensus        37 ~~~~~~vldiG~G~G-~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i  110 (223)
T TIGR01934        37 VFKGQKVLDVACGTG-DLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAV  110 (223)
T ss_pred             cCCCCeEEEeCCCCC-hhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEE
Confidence            457899999999985 455666663 343 699999999999999999775 2   358999999998876555679999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.....+ +..+...+++.+.+.|+|||.+++..
T Consensus       111 ~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       111 TIAFGLR-NVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            8755432 23567789999999999999998755

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.39  E-value=8e-12  Score=124.20  Aligned_cols=151  Identities=15%  Similarity=0.180  Sum_probs=106.7

Q ss_pred             hhHHHHHHhcCCCCccccc---ccCCCcchhhhhhHH----HHHHHHhcC-----------------------------C
Q 036061           85 LELEFATFFAKTPQPLNNL---NLFPYYGNYVKLANL----EYRILDENG-----------------------------V  128 (284)
Q Consensus        85 lE~~~a~~l~~~~~p~~~L---~~fpy~~ny~~l~~~----E~~~l~~~~-----------------------------~  128 (284)
                      ++....++..  ..|++++   ..|..++.++.-..+    |++.|....                             .
T Consensus        59 ~~~~~~rr~~--~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (506)
T PRK01544         59 FEKLLERRLK--HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCN  136 (506)
T ss_pred             HHHHHHHHHc--CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            4444444443  4699998   456666666554433    555444321                             1


Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||+ |..++.+|+ ..++++|+++|+|++|++.|++++...| +.++++++++|+.+... .+.||+|+.
T Consensus       137 ~~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~~-~~~fDlIvs  212 (506)
T PRK01544        137 DKFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENIE-KQKFDFIVS  212 (506)
T ss_pred             CCCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhCc-CCCccEEEE
Confidence            1356899999997 566677776 4688999999999999999999999998 67899999999865332 247999997


Q ss_pred             cc-cccCC------------------------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AA-LVGMS------------------------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa-~v~~~------------------------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +. ++...                        .+...++++++.++|+|||.+++..+
T Consensus       213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            53 22110                        02246688899999999999999764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.39  E-value=4.8e-13  Score=120.86  Aligned_cols=102  Identities=19%  Similarity=0.331  Sum_probs=84.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEeccccccccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      +++||||||| +|+-+.-||+   .|++|+|||+++++++.|++-....+.++.    +++|.+.|+.+..   +.||.|
T Consensus        90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV  162 (282)
T ss_pred             CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence            5889999999 5898999999   899999999999999999999666664444    4889999987543   359999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+-.+ .+..++.++++.+.++|||||.+.+.+
T Consensus       163 vcsevl-eHV~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVL-EHVKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHH-HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence            855332 234788999999999999999999977

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.39  E-value=5.9e-12  Score=110.99  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||+ |+.+..+++   ...+|+++|+++++++.|++++++.| + ++++++++|..+.....+.||+
T Consensus        74 l~~~~~~~VLeiG~Gs-G~~t~~la~---~~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         74 LELKPGDRVLEIGTGS-GYQAAVLAH---LVRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             cCCCCCCEEEEECCCc-cHHHHHHHH---HhCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCcCCCcCE
Confidence            3457889999999997 455567887   23589999999999999999999998 4 4599999998664334467999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |++.+..       ..+.+.+.+.|+|||++++-..
T Consensus       148 I~~~~~~-------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        148 ILVTAAA-------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence            9987653       2345678899999999988654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=2.4e-11  Score=112.27  Aligned_cols=104  Identities=22%  Similarity=0.319  Sum_probs=84.6

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc-c
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-L  211 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~  211 (284)
                      +|||||||+ |.-|+.+|+ ..+.++|+++|+|++|++.|++++...| + .++.++.+|..+-..  ++||+|+++. +
T Consensus       113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence            899999997 677788887 6778899999999999999999999999 5 678888888765333  3899998775 4


Q ss_pred             ccCC-----h------------------HHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          212 VGMS-----K------------------EEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       212 v~~~-----~------------------~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +.-.     +                  +-..++++++.++|+|||.+++..+.
T Consensus       187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence            4221     1                  12378999999999999999999873

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.38  E-value=1.2e-11  Score=109.41  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=84.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+   +.||+|+
T Consensus        53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii  124 (219)
T TIGR02021        53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV  124 (219)
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence            35689999999997 556677777   57899999999999999999998777 5668999999987654   6799998


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ....+ ..+.++...++.++.+.+++|+++.+.
T Consensus       125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            76544 555567788999999999888777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.38  E-value=7e-12  Score=114.87  Aligned_cols=128  Identities=17%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      .+.+....++.+|||||||++ ..+..+++...  .+++|+|+|+|+.|++.|++.   .    .+++|.++|+.+++..
T Consensus        77 ~l~~~l~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~----~~~~~~~~d~~~lp~~  148 (272)
T PRK11088         77 LLAERLDEKATALLDIGCGEG-YYTHALADALPEITTMQLFGLDISKVAIKYAAKR---Y----PQVTFCVASSHRLPFA  148 (272)
T ss_pred             HHHHhcCCCCCeEEEECCcCC-HHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---C----CCCeEEEeecccCCCc
Confidence            343433456689999999985 44555665222  135899999999999999873   2    3689999999988776


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-----CccccccCccCCCc-----cCCCcEEEEE
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-----KGARAFLYPVVEKH-----DLLDFELLSV  265 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-----~glr~~lYp~v~~~-----dl~gfe~~~~  265 (284)
                      .+.||+|+.. +.    +   ..++++.|.|||||.+++...     ..+|..+|......     ...||+....
T Consensus       149 ~~sfD~I~~~-~~----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~gF~~~~~  216 (272)
T PRK11088        149 DQSLDAIIRI-YA----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEAEQLEGFELQHS  216 (272)
T ss_pred             CCceeEEEEe-cC----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccchhhccCCCeeeE
Confidence            6789999843 22    1   235789999999999999874     23566676543221     2357875543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.37  E-value=4.1e-12  Score=113.41  Aligned_cols=137  Identities=15%  Similarity=0.200  Sum_probs=97.8

Q ss_pred             HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061           89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus        89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      |-++=-++..||+.-...|.+..|...          ....++.+||..|||. |..+++||+   .|.+|+|+|+|+.|
T Consensus         6 W~~~w~~~~~~w~~~~~~p~L~~~~~~----------l~~~~~~rvLvPgCG~-g~D~~~La~---~G~~VvGvDls~~A   71 (218)
T PF05724_consen    6 WEERWQEGQTPWDQGEPNPALVEYLDS----------LALKPGGRVLVPGCGK-GYDMLWLAE---QGHDVVGVDLSPTA   71 (218)
T ss_dssp             HHHHHHTT--TT--TTSTHHHHHHHHH----------HTTSTSEEEEETTTTT-SCHHHHHHH---TTEEEEEEES-HHH
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHh----------cCCCCCCeEEEeCCCC-hHHHHHHHH---CCCeEEEEecCHHH
Confidence            333334456788776777776555432          1346778999999996 799999999   79999999999999


Q ss_pred             HHHHHHHHHh------cCC----CCCCeEEEEeccccccccC-CCccEEEec-ccccCChHHHHHHHHHHHhhcCCCcEE
Q 036061          169 NDVARQIVSS------DIE----FEKRMKFVTCDIMQVKEKL-GEYDCIFLA-ALVGMSKEEKVKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       169 i~~Ar~~~~~------~G~----l~~~I~f~~~D~~~~~~~~-~~fD~V~~a-a~v~~~~~~k~~il~~l~~~l~pGg~l  236 (284)
                      ++.|.+-...      .+.    -..+|++.+||..++.... +.||+||-- +++.++++.+.++.+++.+.|+|||.+
T Consensus        72 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~  151 (218)
T PF05724_consen   72 IEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG  151 (218)
T ss_dssp             HHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred             HHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence            9998543221      010    1357899999999877654 479999955 356788999999999999999999994


Q ss_pred             EEE
Q 036061          237 LVR  239 (284)
Q Consensus       237 v~r  239 (284)
                      ++-
T Consensus       152 lLi  154 (218)
T PF05724_consen  152 LLI  154 (218)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.36  E-value=3.1e-13  Score=104.61  Aligned_cols=97  Identities=16%  Similarity=0.320  Sum_probs=62.3

Q ss_pred             EEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccc
Q 036061          135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALV  212 (284)
Q Consensus       135 L~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v  212 (284)
                      ||||||++-++...+++  .++.++|++|+|+.|++.|++.+...+.  ...+....+..+.....  +.||+|+....+
T Consensus         1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999986666555554  5899999999999999999999988763  44555555554433322  389999976554


Q ss_pred             cCChHHHHHHHHHHHhhcCCCcEE
Q 036061          213 GMSKEEKVKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       213 ~~~~~~k~~il~~l~~~l~pGg~l  236 (284)
                      ++- +++..+++++++.|+|||.|
T Consensus        77 ~~l-~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHL-EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S---S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhh-hhHHHHHHHHHHHcCCCCCC
Confidence            333 77889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.36  E-value=1.1e-11  Score=112.37  Aligned_cols=111  Identities=24%  Similarity=0.305  Sum_probs=83.2

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      ....+.-...+... ..++.+|||||||+ |..++.+++  ....+|+++|+|+.+++.|+++++..+ +.+++++..+|
T Consensus       103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~  177 (250)
T PRK00517        103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGD  177 (250)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCC
Confidence            34444444444332 46789999999998 777777776  223359999999999999999999988 56666665544


Q ss_pred             cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .        .||+|+.+..    .+....+++++.+.|+|||.+++..
T Consensus       178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2        6999986543    2556688999999999999999864

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.36  E-value=8.7e-12  Score=115.43  Aligned_cols=118  Identities=24%  Similarity=0.267  Sum_probs=89.3

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      +....++=...+.+. ..++++|||+|||+ |..++.+++  ....+|+++|+|+.|++.|++++...+ +..++++..+
T Consensus       142 ~h~tt~l~l~~l~~~-~~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~  216 (288)
T TIGR00406       142 THPTTSLCLEWLEDL-DLKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLI  216 (288)
T ss_pred             CCHHHHHHHHHHHhh-cCCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEec
Confidence            334444433334333 35779999999998 666777777  334589999999999999999999988 6788888888


Q ss_pred             ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |....  ..+.||+|+.+...    ....+++.++.+.|+|||.+++..
T Consensus       217 ~~~~~--~~~~fDlVvan~~~----~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       217 YLEQP--IEGKADVIVANILA----EVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             ccccc--cCCCceEEEEecCH----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            74332  23579999876543    556789999999999999998864

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.36  E-value=1.5e-11  Score=115.79  Aligned_cols=106  Identities=19%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ...++++.+|||||||+ |..+..+|+......+|+++|+|+++++.|++.+++.| . ++++++++|+.+.....+.||
T Consensus        75 ~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         75 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             hcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCcc
Confidence            33567889999999997 66777788733334589999999999999999999999 4 679999999877665556899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++..+    .   .+...+.+.|+|||++++-.
T Consensus       152 ~Ii~~~g~----~---~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        152 VIFVTVGV----D---EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EEEECCch----H---HhHHHHHHhcCCCCEEEEEe
Confidence            99987554    1   23456778999999988854

>PRK04266 fibrillarin; Provisional

Probab=99.36  E-value=2.4e-11  Score=109.07  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--cc-CCC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EK-LGE  202 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~-~~~  202 (284)
                      +.+.++.+|||+|||++ ..+..+|+. .++.+|+++|++++|++..++++++.    .++.++.+|+.+..  .+ ...
T Consensus        68 l~i~~g~~VlD~G~G~G-~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~  141 (226)
T PRK04266         68 FPIKKGSKVLYLGAASG-TTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEK  141 (226)
T ss_pred             CCCCCCCEEEEEccCCC-HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcccc
Confidence            56688999999999985 556777773 34679999999999999888877653    47899999987521  11 235


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc-c--c---cccCccCCCccC--CCcEEEEEecCCcce-e
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG-A--R---AFLYPVVEKHDL--LDFELLSVFHPTNEV-I  273 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g-l--r---~~lYp~v~~~dl--~gfe~~~~~hP~~~v-~  273 (284)
                      ||+||....   ++.+...+++++.+.|||||.+++.-.+. .  +   .-.|... ...+  .||++..+.....-. .
T Consensus       142 ~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~-~~~l~~aGF~~i~~~~l~p~~~~  217 (226)
T PRK04266        142 VDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEE-IRKLEEGGFEILEVVDLEPYHKD  217 (226)
T ss_pred             CCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHH-HHHHHHcCCeEEEEEcCCCCcCC
Confidence            999985421   12234567899999999999999842211 0  0   0011100 1122  599999887754332 3


Q ss_pred             eeEEEEee
Q 036061          274 NSVVLVRK  281 (284)
Q Consensus       274 nsvi~~r~  281 (284)
                      +-.+++|+
T Consensus       218 h~~~v~~~  225 (226)
T PRK04266        218 HAAVVARK  225 (226)
T ss_pred             eEEEEEEc
Confidence            44566664

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.35  E-value=7.4e-12  Score=114.65  Aligned_cols=116  Identities=19%  Similarity=0.312  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCCh--hH-HHHHHhhcC----CCcEEEEEeCChHHHHHHHHHHH------hc------------C---
Q 036061          129 VNPKKVAFVGSGPMP--LT-SIVMAKNHL----KSTHFDNFDIDEAANDVARQIVS------SD------------I---  180 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp--~t-ai~LA~~~~----~g~~V~~iDid~~ai~~Ar~~~~------~~------------G---  180 (284)
                      .++.+|+++|||++-  +| |+.+++...    .+.+|+|+|+|++|++.|++.+-      ..            +   
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            456899999999752  12 445555211    25799999999999999998541      00            0   


Q ss_pred             ----CCCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          181 ----EFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       181 ----~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                          .+.++|+|.++|+.+.+...+.||+|+... +...+.+.+.++++++++.|+|||.|++-....+
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~  246 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL  246 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence                023579999999988665567899999743 3466778899999999999999999999776554

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=1.5e-11  Score=107.52  Aligned_cols=135  Identities=17%  Similarity=0.202  Sum_probs=88.6

Q ss_pred             HHhcCCCCcccccccCCCc-chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH
Q 036061           91 TFFAKTPQPLNNLNLFPYY-GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN  169 (284)
Q Consensus        91 ~~l~~~~~p~~~L~~fpy~-~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai  169 (284)
                      ++.++.++||.      |- .-|+.- +....++.......-.+++++|||.+-+| ..||.   ..-+++++|+|+.|+
T Consensus        10 ~~~la~~DPW~------~~~~~YE~~-K~~~~l~aaLp~~ry~~alEvGCs~G~lT-~~LA~---rCd~LlavDis~~Al   78 (201)
T PF05401_consen   10 NRELANDDPWG------FETSWYERR-KYRATLLAALPRRRYRRALEVGCSIGVLT-ERLAP---RCDRLLAVDISPRAL   78 (201)
T ss_dssp             HHHHTSSSGGG------TTT-HHHHH-HHHHHHHHHHTTSSEEEEEEE--TTSHHH-HHHGG---GEEEEEEEES-HHHH
T ss_pred             HHHhCCCCCCC------CCCCHHHHH-HHHHHHHHhcCccccceeEecCCCccHHH-HHHHH---hhCceEEEeCCHHHH
Confidence            34456799995      22 223332 21111111224455589999999975554 55777   457899999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc-cCC-hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          170 DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV-GMS-KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       170 ~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~-~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.|++..+..    .+|+|+++|+.+.. +.+.||+|+++... -++ .++...+++.+.+.|+|||.+|+-+.
T Consensus        79 ~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   79 ARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             HHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999976643    47999999997643 34689999877533 343 46788899999999999999999774

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.5e-11  Score=108.49  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|||||||++. .+..+++ ..+..+|+++|+|+++++.+++...      .+++++++|+.+.+...+.||+|+.
T Consensus        33 ~~~~~vLDlG~G~G~-~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        33 FIPASVLDIGCGTGY-LTRALLK-RFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCCeEEEECCCccH-HHHHHHH-hCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence            456899999999854 5566676 4677889999999999999987432      3789999999887755567999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....++ ..+..++++++.+.|+|||.+++..
T Consensus       105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       105 NLALQW-CDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            655433 2456789999999999999999876

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.33  E-value=2e-11  Score=104.87  Aligned_cols=103  Identities=18%  Similarity=0.302  Sum_probs=80.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|||+|||++ .-++.+++   .+.+|+++|+|+++++.|+++++..+.   +++++++|+.+..  .+.||+|+.
T Consensus        18 ~~~~~vLdlG~G~G-~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~   88 (179)
T TIGR00537        18 LKPDDVLEIGAGTG-LVAIRLKG---KGKCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILF   88 (179)
T ss_pred             cCCCeEEEeCCChh-HHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEE
Confidence            56689999999975 55666776   345999999999999999999998873   6899999987644  347999997


Q ss_pred             cccc-cCC-------------------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMS-------------------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~-------------------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +... ..+                   .....++++++.++|+|||.+++..
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            6422 111                   1124678999999999999988865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.33  E-value=3.2e-11  Score=113.48  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=83.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|||||||+ |.-++.+++ . ....|+|||+|+.++..++...+..+ ...+++|+.+|+.+++. .+.||+|+
T Consensus       120 ~l~g~~VLDIGCG~-G~~~~~la~-~-g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~-~~~FD~V~  194 (322)
T PRK15068        120 PLKGRTVLDVGCGN-GYHMWRMLG-A-GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA-LKAFDTVF  194 (322)
T ss_pred             CCCCCEEEEeccCC-cHHHHHHHH-c-CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence            45789999999997 677778887 2 22469999999999987766555554 34689999999988776 56799999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+. +..+...+++++++.|+|||.+++.+
T Consensus       195 s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            765442 23566789999999999999999864

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.5e-11  Score=111.00  Aligned_cols=149  Identities=22%  Similarity=0.319  Sum_probs=111.4

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ..++.++++|++.|.|.+-+| .+||....+.++|+++|+.++..+.|++|++..| +.++|++..+|+.+..... .||
T Consensus        89 ~~gi~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~-~vD  165 (256)
T COG2519          89 RLGISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE-DVD  165 (256)
T ss_pred             HcCCCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc-ccC
Confidence            447899999999999986555 5577656788999999999999999999999999 7889999999999866654 899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec---------CccccccCccCCCccC--CCcEEEEE-ecCCcc-
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA---------KGARAFLYPVVEKHDL--LDFELLSV-FHPTNE-  271 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~---------~glr~~lYp~v~~~dl--~gfe~~~~-~hP~~~-  271 (284)
                      +||++-      ++..++++++.+.|+|||.+++=++         ..++..-|-..+.-++  +.|++... +.|... 
T Consensus       166 av~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~~  239 (256)
T COG2519         166 AVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEATRPETRM  239 (256)
T ss_pred             EEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccccCccccc
Confidence            999862      5678899999999999999998663         2333331221121122  34444332 567754 


Q ss_pred             eeee--EEEEeec
Q 036061          272 VINS--VVLVRKP  282 (284)
Q Consensus       272 v~ns--vi~~r~~  282 (284)
                      +-.|  ++++||.
T Consensus       240 v~HTgyivf~R~~  252 (256)
T COG2519         240 VGHTGYIVFARKL  252 (256)
T ss_pred             ccceeEEEEEeec
Confidence            4455  7778874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.33  E-value=1.8e-11  Score=117.79  Aligned_cols=106  Identities=13%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ......++.+|||||||+++ .++.+|+  ..|++|+|+|+|+++++.|++.++  + +  .+++..+|..++   .+.|
T Consensus       161 ~~l~l~~g~rVLDIGcG~G~-~a~~la~--~~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D~~~l---~~~f  229 (383)
T PRK11705        161 RKLQLKPGMRVLDIGCGWGG-LARYAAE--HYGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQDYRDL---NGQF  229 (383)
T ss_pred             HHhCCCCCCEEEEeCCCccH-HHHHHHH--HCCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECchhhc---CCCC
Confidence            34456788999999999855 5577777  358999999999999999999874  4 2  489999998664   2579


Q ss_pred             cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|+..... +....+...+++.+.+.|||||.+++..
T Consensus       230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999855433 3344666789999999999999999865

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.32  E-value=4.8e-11  Score=105.59  Aligned_cols=104  Identities=16%  Similarity=0.281  Sum_probs=82.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      +..++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+...+ ..++++|.++|..   ...+.||+|
T Consensus        60 ~~~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v  131 (230)
T PRK07580         60 GDLTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTV  131 (230)
T ss_pred             CCCCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEE
Confidence            346778999999997 456677887   56789999999999999999998888 5679999999943   234679999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +....+ +++.+....+++.+.+.+++|+++.+
T Consensus       132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            876544 55667778899999988766565554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.32  E-value=2.6e-11  Score=110.90  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+.++.+|||+||||++.|.. +|+....++.|+++|+++.+++.+++++++.| + .+|+++++|+.+.....+.||.|
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V  144 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI  144 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence            457889999999999877755 55534445799999999999999999999999 4 46999999998765545579999


Q ss_pred             Eecccc-cC-------------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GM-------------SKE-------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~-------------~~~-------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++-- +.             +.+       ...++|++..+.+||||+|++.+
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            987521 11             111       12569999999999999999876

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.32  E-value=2.8e-11  Score=116.92  Aligned_cols=141  Identities=17%  Similarity=0.168  Sum_probs=99.4

Q ss_pred             CCccccc---ccCCCcchhhhh----hHHHHHHHHhcC---CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061           97 PQPLNNL---NLFPYYGNYVKL----ANLEYRILDENG---VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus        97 ~~p~~~L---~~fpy~~ny~~l----~~~E~~~l~~~~---~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      ..|++++   ..|..++.++.-    -+.|.+.+.+..   ..++.+|||+|||+ |.-++.+++ ..++++|+++|+|+
T Consensus       208 gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~  285 (423)
T PRK14966        208 GEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISP  285 (423)
T ss_pred             CCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCH
Confidence            4699987   345444444322    233555554432   24567999999997 555677776 46889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEecc-cccCC-----h------------------HHHHH
Q 036061          167 AANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFLAA-LVGMS-----K------------------EEKVK  221 (284)
Q Consensus       167 ~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~aa-~v~~~-----~------------------~~k~~  221 (284)
                      +|++.|+++++..|.   +++|+++|..+... ..++||+|+.+. ++...     .                  +-..+
T Consensus       286 ~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~  362 (423)
T PRK14966        286 PALETARKNAADLGA---RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRT  362 (423)
T ss_pred             HHHHHHHHHHHHcCC---cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHH
Confidence            999999999998873   89999999865322 224699999865 22110     0                  11357


Q ss_pred             HHHHHHhhcCCCcEEEEEecC
Q 036061          222 IIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       222 il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +++++.++|+|||.+++..+.
T Consensus       363 Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        363 LAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             HHHHHHHhcCCCcEEEEEECc
Confidence            888889999999999987753

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.31  E-value=3.1e-11  Score=115.84  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEeccccccccCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE--KRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~--~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|+++++..+ .+  .+++|+.+|+.+... ...||+|+
T Consensus       228 ~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~~-~~~fDlIl  303 (378)
T PRK15001        228 LEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGVE-PFRFNAVL  303 (378)
T ss_pred             cCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccCC-CCCEEEEE
Confidence            346999999998 556677777 4789999999999999999999998876 33  479999999865322 24799999


Q ss_pred             ecccc--c--CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV--G--MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v--~--~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+...  +  .+.....+++.+..++|+|||.+.+..
T Consensus       304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            87532  2  233456789999999999999988874

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.31  E-value=2.2e-11  Score=107.46  Aligned_cols=99  Identities=10%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..|++ ..++.+++|||+|++|++.|++..       .++++.++|+.+ +...+.||+|+
T Consensus        41 ~~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~  110 (204)
T TIGR03587        41 LPKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVL  110 (204)
T ss_pred             cCCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEE
Confidence            35778999999997 666777776 357899999999999999998842       246888999887 55556899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ....+ ++++++..++++++.+.++  +.+++
T Consensus       111 ~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i  140 (204)
T TIGR03587       111 TKGVLIHINPDNLPTAYRELYRCSN--RYILI  140 (204)
T ss_pred             ECChhhhCCHHHHHHHHHHHHhhcC--cEEEE
Confidence            76644 6677788999999999973  45444

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.30  E-value=1.5e-11  Score=109.35  Aligned_cols=107  Identities=16%  Similarity=0.306  Sum_probs=96.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      -.+++.++||.=+ |+|++.+|.+...+++|+++|+|+++.+++.++.+..| +.++|+|++|++.+.+..      -+.
T Consensus        72 ~~ak~~lelGvfT-GySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   72 LNAKRTLELGVFT-GYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             hCCceEEEEeccc-CHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence            4789999999975 89999999977789999999999999999999999999 799999999999875432      246


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||++|+++..    ..+...++++.+.+|+||+|++.+.
T Consensus       150 fDfaFvDadK----~nY~~y~e~~l~Llr~GGvi~~DNv  184 (237)
T KOG1663|consen  150 FDFAFVDADK----DNYSNYYERLLRLLRVGGVIVVDNV  184 (237)
T ss_pred             eeEEEEccch----HHHHHHHHHHHhhcccccEEEEecc
Confidence            9999999885    8888999999999999999999984

>PRK14967 putative methyltransferase; Provisional

Probab=99.30  E-value=4e-11  Score=106.70  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||+|||+ |.-++.+++  ....+|+++|+|+.+++.|+++++..|.   +++++++|..+.. ..+.||
T Consensus        31 ~~~~~~~~~vLDlGcG~-G~~~~~la~--~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~~-~~~~fD  103 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGS-GALAVAAAA--AGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARAV-EFRPFD  103 (223)
T ss_pred             hcccCCCCeEEEecCCH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhhc-cCCCee
Confidence            34456778999999998 666777887  2234999999999999999999998883   6899999987643 235799


Q ss_pred             EEEecc-cccCCh-------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061          205 CIFLAA-LVGMSK-------------------EEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       205 ~V~~aa-~v~~~~-------------------~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +|+.+. ++....                   ..-.++++++.+.|+|||++++-
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999874 221100                   11356888999999999999874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=4.3e-11  Score=116.82  Aligned_cols=111  Identities=17%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~  205 (284)
                      .+.++.+|||+||||+|.|.. +|.....+++|+++|+|+.+++.+++++++.| + ++++++++|+.+++.. .+.||.
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~fD~  310 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTFDR  310 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccCCE
Confidence            457889999999999877654 55534467899999999999999999999999 4 4699999999876522 346999


Q ss_pred             EEecccc---cC---Ch---------------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---GM---SK---------------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~~---~~---------------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++--   |.   ++               ....+++.++++.|||||.+++.+
T Consensus       311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9987522   22   11               123678999999999999999977

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.29  E-value=7.2e-11  Score=107.40  Aligned_cols=137  Identities=20%  Similarity=0.178  Sum_probs=94.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD~V~  207 (284)
                      .+.+|||+|||+ |.-++.+++ ..++.+|+++|+|++|++.|+++++..|     ++|+++|+.+....  .+.||+|+
T Consensus        86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence            346999999998 455566666 3678899999999999999999998776     37899998764321  14699999


Q ss_pred             ecc-ccc------CChHH------------------HHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEE
Q 036061          208 LAA-LVG------MSKEE------------------KVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFEL  262 (284)
Q Consensus       208 ~aa-~v~------~~~~~------------------k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~  262 (284)
                      ++. ++.      ++.+.                  ..++++.+.++|+|||.+++.....-..   .....-.-.||+.
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~---~v~~~l~~~g~~~  235 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAP---LAVEAFARAGLIA  235 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHH---HHHHHHHHCCCCc
Confidence            875 221      11111                  2478888899999999999986432100   0000001157888


Q ss_pred             EEEecCCcceeeeEEE
Q 036061          263 LSVFHPTNEVINSVVL  278 (284)
Q Consensus       263 ~~~~hP~~~v~nsvi~  278 (284)
                      -...||.-  .-+||+
T Consensus       236 ~~~~~~~~--~~~~~~  249 (251)
T TIGR03704       236 RVASSEEL--YATVVI  249 (251)
T ss_pred             eeeEcccc--cceeee
Confidence            88888876  444544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.29  E-value=7.4e-11  Score=105.57  Aligned_cols=108  Identities=23%  Similarity=0.319  Sum_probs=84.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++...| + ++++++++|+.+.. ..+.||+|+.
T Consensus        86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~-~~~~fD~Vi~  160 (251)
T TIGR03534        86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEPL-PGGKFDLIVS  160 (251)
T ss_pred             cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhccC-cCCceeEEEE
Confidence            4567999999997 566677777 4678899999999999999999999988 4 47999999997632 3457999987


Q ss_pred             ccc-cc------CChH------------------HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AAL-VG------MSKE------------------EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~-v~------~~~~------------------~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.. +.      +...                  ....+++++.+.|+|||.+++..+
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            531 11      1111                  124789999999999999999764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.29  E-value=2e-11  Score=115.62  Aligned_cols=104  Identities=20%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++....     .+++++++|+.+.+...+.||+|+.
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence            4678999999998 455566776 35678999999999999999996531     4689999999887765567999987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..+.. ..++.++++++.+.|+|||.+++..
T Consensus       185 ~~~L~~-~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        185 AGSIEY-WPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             cChhhh-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            654421 2456789999999999999988754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.28  E-value=4.5e-11  Score=114.71  Aligned_cols=111  Identities=17%  Similarity=0.190  Sum_probs=89.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD  204 (284)
                      ....+..+||||||. |.-++.+|+ ..|+..|+|+|+++.+++.|.+.+...| + .++.++++|+..+..  +.+.+|
T Consensus       119 ~~~~~p~vLEIGcGs-G~~ll~lA~-~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D  194 (390)
T PRK14121        119 SKNQEKILIEIGFGS-GRHLLYQAK-NNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVE  194 (390)
T ss_pred             cCCCCCeEEEEcCcc-cHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCcee
Confidence            335567999999997 566677887 4689999999999999999999999998 4 569999999976532  335799


Q ss_pred             EEEecccccCChHHH-----HHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEK-----VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k-----~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .|++..-..|++..-     ..+++.++|.|+|||.+.+++.
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            999865555543321     5789999999999999999883

>TIGR00452 methyltransferase, putative

Probab=99.28  E-value=5.3e-11  Score=111.64  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++++|||||||+ |+-++.++.   .| ..|+|||+|+.++..++..-+..+ ...++.+..+|+.+++.. ..||+
T Consensus       118 ~~~~g~~VLDvGCG~-G~~~~~~~~---~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~-~~FD~  191 (314)
T TIGR00452       118 SPLKGRTILDVGCGS-GYHMWRMLG---HGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL-YAFDT  191 (314)
T ss_pred             CCCCCCEEEEeccCC-cHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC-CCcCE
Confidence            457789999999997 565666666   34 379999999999987655444434 346899999999887653 47999


Q ss_pred             EEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||....+ +.  .+..++++++++.|+|||.|++.+
T Consensus       192 V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       192 VFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEE
Confidence            9976543 33  456789999999999999999864

Known examples to date are restricted to the proteobacteria.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.27  E-value=6.7e-11  Score=115.17  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=84.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD  204 (284)
                      .+.++.+|||+||||++.|.. +|+ ..++++|+++|+|+++++.+++++++.| +..++++..+|..+...  ..+.||
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~-la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~fD  311 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTH-ILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQFD  311 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHH-HHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccccC
Confidence            457889999999999777654 555 2347899999999999999999999999 55445557888765433  335799


Q ss_pred             EEEecccc---cC---ChH---------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV---GM---SKE---------------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v---~~---~~~---------------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|++++.-   |.   .++               ...+++++.++.|||||.|++.+
T Consensus       312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99987521   21   111               13689999999999999999976

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=7.9e-11  Score=115.31  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+++++.+++++++.| + ++|+++++|+.++.. ...||.|
T Consensus       247 ~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~-~~~fD~V  322 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSP-EEQPDAI  322 (445)
T ss_pred             CCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCccccccc-CCCCCEE
Confidence            3467889999999997655 5566634456799999999999999999999999 4 479999999987653 3479999


Q ss_pred             Eecccc---cC-----------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV---GM-----------SKE-------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v---~~-----------~~~-------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++.-   |.           +.+       ...+++..+++.|+|||++++.+
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            986421   11           111       23469999999999999999977

>PRK14968 putative methyltransferase; Provisional

Probab=99.26  E-value=1.1e-10  Score=99.68  Aligned_cols=106  Identities=20%  Similarity=0.333  Sum_probs=82.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKR-MKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~-I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++|||+|||. |..+..+++   .+.+|+++|+|+++++.+++++...+ +.++ ++++++|..+...+ ..||+|+
T Consensus        22 ~~~~~vLd~G~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGS-GIVAIVAAK---NGKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL   95 (188)
T ss_pred             cCCCEEEEEcccc-CHHHHHHHh---hcceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence            5778999999997 667788887   38999999999999999999999888 4444 99999998764332 3799998


Q ss_pred             ecccccC--------------------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGM--------------------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~--------------------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.....                    .......+++++.+.|+|||.+++-.
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~  148 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ  148 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            7542210                    01224568999999999999887654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=1.2e-10  Score=113.58  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD  204 (284)
                      .+.++.+|||+||||++.|.. +++ ..++++|+++|+|+++++.+++++++.|.   +++++++|+.+...  ..+.||
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~-la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAH-ILE-LAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHH-HHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCC
Confidence            457889999999999776654 555 24558999999999999999999999994   47999999986542  224699


Q ss_pred             EEEecccc-cC-------------Ch-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GM-------------SK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~-------------~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|++++-. +.             ..       ....++++...+.|+|||.+++.+
T Consensus       316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            99976631 10             11       123579999999999999999876

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.26  E-value=9.3e-11  Score=111.27  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ....+|||+|||++ .-++.+++ ..++.+|+++|+|+.|++.|++++++.+ +  ..+++.+|+.+..  .+.||+|+.
T Consensus       195 ~~~g~VLDlGCG~G-~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~~--~~~fDlIvs  267 (342)
T PRK09489        195 HTKGKVLDVGCGAG-VLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSDI--KGRFDMIIS  267 (342)
T ss_pred             cCCCeEEEeccCcC-HHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEccccccc--CCCccEEEE
Confidence            44568999999975 55666776 4678899999999999999999999988 4  3578888886522  357999998


Q ss_pred             ccccc--C--ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVG--M--SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~--~--~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+  .  +.....++++++.++|+|||.+++..
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            75332  1  23567899999999999999987765

>PRK00811 spermidine synthase; Provisional

Probab=99.26  E-value=6.6e-11  Score=109.43  Aligned_cols=111  Identities=20%  Similarity=0.311  Sum_probs=84.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C--CCCeEEEEecccccccc-CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F--EKRMKFVTCDIMQVKEK-LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l--~~~I~f~~~D~~~~~~~-~~~fD  204 (284)
                      ..+++||+||||. |.++..+++ +....+|+++|+|+++++.|++.+...+. .  ..+++++.+|+.+.... .+.||
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            5689999999996 566666666 33457899999999999999999875420 1  46899999999876543 34799


Q ss_pred             EEEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|++++.-+....   -..++++.+.+.|+|||++++...
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9998763211111   136789999999999999998654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.26  E-value=1.3e-10  Score=109.41  Aligned_cols=110  Identities=15%  Similarity=0.032  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||++++ ++..+.   .|++|+|+|+|++|++.|+++++..| +.+ +++.++|+.+++...+.||+|
T Consensus       179 ~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~I  252 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDAI  252 (329)
T ss_pred             CCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCEE
Confidence            457788999999998654 344444   68999999999999999999999999 555 999999999876655679999


Q ss_pred             EecccccC--------ChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGM--------SKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~--------~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +++.--|.        ......++++.+.+.|+|||++++-...
T Consensus       253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            98742111        1123578999999999999999887654

This family is found exclusively in the Archaea.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.25  E-value=5.3e-11  Score=107.73  Aligned_cols=110  Identities=21%  Similarity=0.357  Sum_probs=89.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~  205 (284)
                      .....+|||+|||. |.-++.+|++ .+.++|++||+++++++.|+++++..+ +++||+++++|+.++....  ..||+
T Consensus        42 ~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~  118 (248)
T COG4123          42 VPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDL  118 (248)
T ss_pred             cccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCE
Confidence            35589999999997 6778888883 455999999999999999999999999 8999999999999877654  35999


Q ss_pred             EEecccc---cCC---hHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---GMS---KEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~~~---~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+++.--   +-.   .+.|           +.+++...+.|||||.+.+-.
T Consensus       119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            9987521   111   1122           788999999999999988865

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=6.5e-11  Score=115.81  Aligned_cols=111  Identities=21%  Similarity=0.283  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      .+.++.+|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +++++++|+.+....+ +.||+
T Consensus       247 ~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~fD~  323 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKFDK  323 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccCCE
Confidence            3567889999999997665 4566633467899999999999999999999999 54 5999999998764333 57999


Q ss_pred             EEecccc---cC-----------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---GM-----------SKE-------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~~-----------~~~-------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++-.   |.           +..       ...++++++.+.|||||.+++.+
T Consensus       324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            9987531   11           001       12468999999999999999765

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=7.4e-11  Score=109.44  Aligned_cols=143  Identities=24%  Similarity=0.280  Sum_probs=99.4

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      +.-.++=.++|.+.. .++++|||+|||+ |.=||..++   .|+. |+|+|+||-|++.|+.+++..| +...++.-..
T Consensus       146 HpTT~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~  219 (300)
T COG2264         146 HPTTSLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGF  219 (300)
T ss_pred             ChhHHHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccc
Confidence            333444444554443 6899999999997 787888777   6665 9999999999999999999999 5544444444


Q ss_pred             ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCc-cCCCcEEEEEecCC
Q 036061          192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH-DLLDFELLSVFHPT  269 (284)
Q Consensus       192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~-dl~gfe~~~~~hP~  269 (284)
                      +..+.+. .+.||+|+.+-+.    +.-.++..++.+.++|||++++..-  +..- ...|-.. .-.||++..+.++.
T Consensus       220 ~~~~~~~-~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGI--l~~q-~~~V~~a~~~~gf~v~~~~~~~  290 (300)
T COG2264         220 LLLEVPE-NGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGI--LEDQ-AESVAEAYEQAGFEVVEVLERE  290 (300)
T ss_pred             cchhhcc-cCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEee--hHhH-HHHHHHHHHhCCCeEeEEEecC
Confidence            5444333 2479999876653    6677899999999999999998751  0000 0000000 22589998888873

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=7.6e-11  Score=115.10  Aligned_cols=111  Identities=16%  Similarity=0.158  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~  202 (284)
                      .+.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.++++++++| + ++|+++++|+.+.+.    ..+.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~~  325 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWRGY  325 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccccc
Confidence            45778999999999977764 456633456799999999999999999999999 4 469999999987652    2347


Q ss_pred             ccEEEecccc---cC---ChH---------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV---GM---SKE---------------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v---~~---~~~---------------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||.|++++--   |.   .++               ...++++++++.|||||+|++.+
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999987521   11   111               13689999999999999999876

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.24  E-value=1.1e-10  Score=100.77  Aligned_cols=108  Identities=23%  Similarity=0.367  Sum_probs=84.5

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE---
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF---  207 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~---  207 (284)
                      ..||||+|||. |.-...|++ .......+|+|.|++|+++|+..+++.| +++.|+|.+.|+++-....++||+|.   
T Consensus        68 A~~VlDLGtGN-G~~L~~L~~-egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDKG  144 (227)
T KOG1271|consen   68 ADRVLDLGTGN-GHLLFQLAK-EGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDKG  144 (227)
T ss_pred             ccceeeccCCc-hHHHHHHHH-hcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeecC
Confidence            34999999997 676777887 3334459999999999999999999999 78889999999987545556899996   


Q ss_pred             -ecc--cccCChHHH-HHHHHHHHhhcCCCcEEEEEec
Q 036061          208 -LAA--LVGMSKEEK-VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 -~aa--~v~~~~~~k-~~il~~l~~~l~pGg~lv~r~~  241 (284)
                       .+|  +-++....| .-++..+.+.|+|||++++-+-
T Consensus       145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC  182 (227)
T ss_pred             ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence             233  223333333 5578889999999999999874

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.24  E-value=1.3e-10  Score=86.97  Aligned_cols=102  Identities=19%  Similarity=0.316  Sum_probs=80.8

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEeccc
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFLAAL  211 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~aa~  211 (284)
                      +|+++|||+++ .+..+++  ..+.+++++|+|+.+++.+++.....+  ..++++.++|..+... ..++||+|+.+..
T Consensus         1 ~ildig~G~G~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGA-LALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccH-HHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence            58999999854 5555655  468899999999999999997544443  4789999999988664 4467999998765


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .....+....+++.+.+.++|||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            4321467889999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.23  E-value=9.4e-11  Score=97.15  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=75.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|||||||.+ ..+..+++   .|.+|+++|+++.+++.            ..+.+...+..+.....+.||+|+
T Consensus        20 ~~~~~~vLDiGcG~G-~~~~~l~~---~~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~   83 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTG-SFLRALAK---RGFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLII   83 (161)
T ss_dssp             TTTTSEEEEESSTTS-HHHHHHHH---TTSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEE
T ss_pred             cCCCCEEEEEcCCCC-HHHHHHHH---hCCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHh
Confidence            478899999999975 55666777   57799999999999988            134555554444444556899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      ....+.. ..+...+++.+.+.|||||.+++....
T Consensus        84 ~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   84 CNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            7765422 146889999999999999999998853

...

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.23  E-value=6.7e-11  Score=110.01  Aligned_cols=116  Identities=24%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             hhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061          111 NYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       111 ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~  189 (284)
                      -.+.-.++=.++|.+. ..++++|||||||+ |.-|+.-++   .|+ +|+++|+||.|++.|++|++..| +++++++.
T Consensus       143 G~H~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~  216 (295)
T PF06325_consen  143 GHHPTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS  216 (295)
T ss_dssp             SHCHHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES
T ss_pred             CCCHHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE
Confidence            3455555555556555 46778999999997 787887777   555 69999999999999999999999 78888764


Q ss_pred             EeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       190 ~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...+...  ..||+|+.+-+.    ..-..++..+.++|+|||.+++..
T Consensus       217 --~~~~~~~--~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG  259 (295)
T PF06325_consen  217 --LSEDLVE--GKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG  259 (295)
T ss_dssp             --CTSCTCC--S-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred             --Eeccccc--ccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence              2222222  689999865443    566788999999999999999954

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02366 spermidine synthase

Probab=99.23  E-value=1.1e-10  Score=109.26  Aligned_cols=110  Identities=22%  Similarity=0.321  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC--CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL--GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~--~~fD  204 (284)
                      ..+++||+||||. |.++..+++ +.+..+|+.+|||+++++.|++.+...  +.-..|++++++|+.+.....  +.||
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            6789999999996 566777887 334578999999999999999988653  211359999999997665433  4699


Q ss_pred             EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|++++.-+.....   ..++++.+.+.|+|||+++...
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            99988653221122   4679999999999999998754

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.23  E-value=1.9e-10  Score=102.37  Aligned_cols=105  Identities=18%  Similarity=0.271  Sum_probs=84.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V  206 (284)
                      ..++.+||+||||+ |..+..+++   .+++|+++|+++++++.|++.+...+.   +++++.+|..+.+. ..+.||+|
T Consensus        46 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~I  118 (233)
T PRK05134         46 GLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVV  118 (233)
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEE
Confidence            45788999999997 556677777   578999999999999999999888773   68999999877652 23579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....+.. ..+...+++.+.+.|+|||.+++..
T Consensus       119 i~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        119 TCMEMLEH-VPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             EEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            87654422 2456789999999999999998865

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.22  E-value=1.4e-10  Score=114.05  Aligned_cols=104  Identities=25%  Similarity=0.307  Sum_probs=82.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc--ccccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ--VKEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~--~~~~~~~fD~V  206 (284)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+++++++.+++.   .+ ...+++|+++|+.+  .+.+.+.||+|
T Consensus        36 ~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~---~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         36 YEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESI---NG-HYKNVKFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHH---hc-cCCceEEEEecccccccCCCCCCEEEE
Confidence            4667999999997 566677888   467999999999999988763   23 23589999999864  33334579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..... .++.++..++++++.+.|+|||.++++.
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            976543 4455667899999999999999999976

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.20  E-value=9.2e-11  Score=106.51  Aligned_cols=109  Identities=19%  Similarity=0.296  Sum_probs=84.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cC-C
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KL-G  201 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~-~  201 (284)
                      ..++.+|++|++.|+|.+.+| ..||+...+.++|+.+|+.++..+.|+++++..| +.++|++.+.|+.+--.  +. .
T Consensus        35 ~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~~~~~  112 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDEELES  112 (247)
T ss_dssp             HTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--STT-TT
T ss_pred             HcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccccccC
Confidence            446799999999999987665 5677767889999999999999999999999999 78999999999964322  22 4


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~~  241 (284)
                      .||.||++-      ++..+++.++.+.| +|||++++=++
T Consensus       113 ~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  113 DFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             SEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             cccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence            699999873      45567899999999 99999988553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.19  E-value=3.7e-10  Score=102.72  Aligned_cols=109  Identities=24%  Similarity=0.368  Sum_probs=83.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++. .+ ...+++|+++|+.+... .+.||+|+
T Consensus       106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~~-~~~fD~Iv  180 (275)
T PRK09328        106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPLP-GGRFDLIV  180 (275)
T ss_pred             ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcCC-CCceeEEE
Confidence            35678999999997 566777887 4678999999999999999999998 33 34689999999865322 35799998


Q ss_pred             ecc-ccc------CCh------------------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAA-LVG------MSK------------------EEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa-~v~------~~~------------------~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+. ++.      +..                  +...++++++.+.|+|||.+++..+
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            753 111      111                  2236788999999999999999764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.19  E-value=2.3e-10  Score=110.50  Aligned_cols=109  Identities=21%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc----CCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK----LGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~----~~~f  203 (284)
                      .++++|||+|||+++++ +..+.  ....+|+++|+|+.+++.|+++++..| +. ++++|+++|+.+....    ...|
T Consensus       219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence            46789999999987764 44443  234499999999999999999999999 65 5899999999886532    2369


Q ss_pred             cEEEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.-- .-++       ....+++....+.|+|||.|++-+-
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999998532 1111       2345667788999999999998664

>PRK05785 hypothetical protein; Provisional

Probab=99.18  E-value=1.3e-10  Score=104.16  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||||||++ ..+..+++. . +.+|+|+|+|++|++.|++.          ..++++|+.+++...+.||+|+..
T Consensus        51 ~~~~VLDlGcGtG-~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGKG-ELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCCC-HHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEec
Confidence            4789999999985 556777772 2 78999999999999999862          135789999888777789999976


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCc
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGG  234 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg  234 (284)
                      ..+. ...+..+.+++++|+|||+.
T Consensus       118 ~~l~-~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        118 FALH-ASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             Chhh-ccCCHHHHHHHHHHHhcCce
Confidence            5442 34677889999999999954

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.18  E-value=5.8e-10  Score=104.75  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---CCCCeEEEEeccccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE---FEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~---l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      .++.+|||||||+ |..++.+++   .|.+|+++|+|+.|++.|++++...+.   ...+++|.++|+.++   .+.||+
T Consensus       143 ~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~  215 (315)
T PLN02585        143 LAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDT  215 (315)
T ss_pred             CCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCE
Confidence            3578999999997 566788888   589999999999999999999887631   124789999997553   357999


Q ss_pred             EEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          206 IFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       206 V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      |+.... .+.+.+....+++.+.+ +.+|++++.
T Consensus       216 Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        216 VTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            986543 35555555567888875 466766554

>PRK01581 speE spermidine synthase; Validated

Probab=99.18  E-value=2.2e-10  Score=108.99  Aligned_cols=112  Identities=22%  Similarity=0.371  Sum_probs=83.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----HhcCCCCCCeEEEEeccccccccC-C
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-----SSDIEFEKRMKFVTCDIMQVKEKL-G  201 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-----~~~G~l~~~I~f~~~D~~~~~~~~-~  201 (284)
                      ...|++||+||||. |.++..+.+ +.+..+|+++|+|+++++.|++..     .+.+.-..|++++.+|+.+..... +
T Consensus       148 h~~PkrVLIIGgGd-G~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~  225 (374)
T PRK01581        148 VIDPKRVLILGGGD-GLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS  225 (374)
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence            36788999999995 667777766 445689999999999999999731     122211479999999999865443 4


Q ss_pred             CccEEEecccccC----ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGM----SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~----~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||++..-+.    ..--..++++.+.+.|+|||++++...
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            6999998853211    112236799999999999999988753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.16  E-value=1.8e-10  Score=118.60  Aligned_cols=108  Identities=14%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEeccccccccC-CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      .++++||++|||+++ .++.+|+   .|+ +|+++|+|+.|++.|+++++..| +. ++++|+++|+.++.... ..||+
T Consensus       537 ~~g~rVLDlf~gtG~-~sl~aa~---~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGT-ASVHAAL---GGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCH-HHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCE
Confidence            467899999999855 4677777   355 69999999999999999999999 55 68999999998765433 47999


Q ss_pred             EEeccc-ccC---------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAAL-VGM---------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~-v~~---------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++.- ...         ......+++..+.+.|+|||.+++.+.
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            998752 111         123457789999999999999988663

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.15  E-value=3.9e-10  Score=99.43  Aligned_cols=105  Identities=19%  Similarity=0.275  Sum_probs=84.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      .++.+|||+|||+ |..+..+++   .+.+++++|+|+.+++.+++.+...+.  .+++|.++|+.+.+... +.||+|+
T Consensus        44 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~  117 (224)
T TIGR01983        44 LFGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVT  117 (224)
T ss_pred             CCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEE
Confidence            3578999999997 455667777   467899999999999999999888773  36999999998766543 5799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....++. ..+...+++.+.+.|+|||.+++..
T Consensus       118 ~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       118 CMEVLEH-VPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             ehhHHHh-CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            7654422 2455689999999999999998865

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.15  E-value=1.5e-09  Score=92.48  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=93.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||++.+| ..+++   .+.+|+++|+|+.+++.+++++...    .+++++++|+.++......||
T Consensus         8 ~~~~~~~~~vLEiG~G~G~lt-~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        8 AANLRPGDTVLEIGPGKGALT-EELLE---RAARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             hcCCCCcCEEEEECCCccHHH-HHHHh---cCCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCC
Confidence            345567789999999986554 55666   3689999999999999999987542    489999999988765444699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhh--cCCCcEEEEEecCccccccCccCCC-ccC-------CCcEEEEE-----ecCC
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKY--MKDGGVLLVRSAKGARAFLYPVVEK-HDL-------LDFELLSV-----FHPT  269 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~--l~pGg~lv~r~~~glr~~lYp~v~~-~dl-------~gfe~~~~-----~hP~  269 (284)
                      .|+.+......    .+++..+.+.  +.++|.+++.....-|-.--|-... ..+       .-++.+..     ++|-
T Consensus        80 ~vi~n~Py~~~----~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~  155 (169)
T smart00650       80 KVVGNLPYNIS----TPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPP  155 (169)
T ss_pred             EEEECCCcccH----HHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCC
Confidence            99876543222    2444444433  3488888886632211111111000 000       11233322     6899


Q ss_pred             cceeeeEEEEee
Q 036061          270 NEVINSVVLVRK  281 (284)
Q Consensus       270 ~~v~nsvi~~r~  281 (284)
                      ++|--+||..++
T Consensus       156 PkV~s~~~~~~~  167 (169)
T smart00650      156 PKVDSAVVRLER  167 (169)
T ss_pred             CCceEEEEEEEE
Confidence            999998887765

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=1.8e-10  Score=101.07  Aligned_cols=106  Identities=21%  Similarity=0.296  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEeccccccc-cCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK-FVTCDIMQVKE-KLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~-f~~~D~~~~~~-~~~~fD~V  206 (284)
                      .....||+|||||++-  .-+-. ..|+.+||++|.+|.|-+.|.+-+++.-.  .+++ |+++++.+++. ..++||.|
T Consensus        75 ~~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtV  149 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTV  149 (252)
T ss_pred             cCccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeE
Confidence            4445689999998642  11111 13799999999999999999999987642  5676 99999998773 44689999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +. .++-++.++..+.|+++.|.|+|||++++-.
T Consensus       150 V~-TlvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  150 VC-TLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EE-EEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            74 4554566888999999999999999998865

>PRK06202 hypothetical protein; Provisional

Probab=99.13  E-value=6e-10  Score=99.49  Aligned_cols=104  Identities=14%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      .++.+|||||||++. .+..|++.   ..++.+|+|+|+|+++++.|++.....     ++++.++|+.+++...+.||+
T Consensus        59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccE
Confidence            567899999999854 45566642   235679999999999999999865432     467777766555544468999


Q ss_pred             EEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+++... +.+.++..++++++.+.++ | .+++.+
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~d  166 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHND  166 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEec
Confidence            9977544 4555566789999999987 4 444443

>PTZ00146 fibrillarin; Provisional

Probab=99.11  E-value=2e-09  Score=99.84  Aligned_cols=187  Identities=10%  Similarity=0.019  Sum_probs=112.2

Q ss_pred             hHHHHHHhcCCCCccc-ccccCCCcc-hhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEe
Q 036061           86 ELEFATFFAKTPQPLN-NLNLFPYYG-NYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFD  163 (284)
Q Consensus        86 E~~~a~~l~~~~~p~~-~L~~fpy~~-ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iD  163 (284)
                      |..|.+++...+++-. .=..|.-++ +.-+|+-.-+.-+....+.++++|||+|||| |.++..+|+...+..+|+++|
T Consensus        86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD  164 (293)
T PTZ00146         86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE  164 (293)
T ss_pred             cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence            5666666655432210 011233232 2244444444444455678899999999998 566777887444567999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++.+.+...+.+...    .+|.++.+|+....   .....||+||.+...   +.+...++.++.+.|||||.|++.-
T Consensus       165 ~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i  237 (293)
T PTZ00146        165 FSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI  237 (293)
T ss_pred             CcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence            9998765555544332    47899999986421   123469999987642   2445556678999999999999942


Q ss_pred             c-CccccccCccCC-----CccC--CCcEEEEEecCCc-ceeeeEEEEee
Q 036061          241 A-KGARAFLYPVVE-----KHDL--LDFELLSVFHPTN-EVINSVVLVRK  281 (284)
Q Consensus       241 ~-~glr~~lYp~v~-----~~dl--~gfe~~~~~hP~~-~v~nsvi~~r~  281 (284)
                      - +.. ..-.|+-+     .+.+  .||+++..++... +--.++|+++.
T Consensus       238 ka~~i-d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~  286 (293)
T PTZ00146        238 KANCI-DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY  286 (293)
T ss_pred             ecccc-ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence            1 111 11111100     0113  4899988877443 34445666554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.09  E-value=1.3e-09  Score=96.45  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------cc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------EK  199 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------~~  199 (284)
                      ..++.+||||||||+..+. .+++...++++|++||+++ +          .+ . .+++++++|+++..        ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence            4778899999999976654 4555344568999999998 1          12 1 35899999998742        23


Q ss_pred             CCCccEEEecccc---cCChHH-------HHHHHHHHHhhcCCCcEEEEEecCc--cccccCccCCCccC-CCcEEEEEe
Q 036061          200 LGEYDCIFLAALV---GMSKEE-------KVKIIKHIRKYMKDGGVLLVRSAKG--ARAFLYPVVEKHDL-LDFELLSVF  266 (284)
Q Consensus       200 ~~~fD~V~~aa~v---~~~~~~-------k~~il~~l~~~l~pGg~lv~r~~~g--lr~~lYp~v~~~dl-~gfe~~~~~  266 (284)
                      .+.||+|+.+...   +.+..+       -..+++.+.+.|+|||.+++-...+  +..+++      .+ ..|+...+.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~------~l~~~f~~v~~~  188 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLR------EIRSLFTKVKVR  188 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHH------HHHhCceEEEEE
Confidence            3579999965321   111111       1568999999999999999965332  122221      22 467887887


Q ss_pred             cCCcc
Q 036061          267 HPTNE  271 (284)
Q Consensus       267 hP~~~  271 (284)
                      .|...
T Consensus       189 Kp~ss  193 (209)
T PRK11188        189 KPDSS  193 (209)
T ss_pred             CCccc
Confidence            77654

>TIGR00417 speE spermidine synthase

Probab=99.09  E-value=1e-09  Score=100.64  Aligned_cols=111  Identities=19%  Similarity=0.278  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEecccccccc-CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVKEK-LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~~~-~~~fD~  205 (284)
                      ..|++||+||||.++ ++..+++ +.+..+|+++|+|+++++.|++.+...+.  -..+++++.+|+.+.... .+.||+
T Consensus        71 ~~p~~VL~iG~G~G~-~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDGG-VLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCchH-HHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            567799999999754 4555555 34467899999999999999998865421  135899999998765433 247999


Q ss_pred             EEecccccC-ChHH--HHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGM-SKEE--KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~-~~~~--k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..-+. +...  ..++++.+.+.|+|||++++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            998765211 1122  46889999999999999999754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2e-09  Score=99.69  Aligned_cols=106  Identities=23%  Similarity=0.280  Sum_probs=82.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|||+|||.+++ ++.+|+ ..|..++|.+|+|..|++.||++++..+ ++.. .+..+|..+-..  ++||+|++
T Consensus       157 ~~~~~vlDlGCG~Gvl-g~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v~--~kfd~Iis  230 (300)
T COG2813         157 DLGGKVLDLGCGYGVL-GLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPVE--GKFDLIIS  230 (300)
T ss_pred             cCCCcEEEeCCCccHH-HHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEeccccccc--ccccEEEe
Confidence            4456999999997554 566777 5789999999999999999999999998 4443 777788765333  27999998


Q ss_pred             cccccCCh----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSK----EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~----~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.-++.-.    .--++++.+..++|++||.|.+..
T Consensus       231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa  266 (300)
T COG2813         231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA  266 (300)
T ss_pred             CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence            87552211    123589999999999999877665

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.07  E-value=8.2e-10  Score=95.64  Aligned_cols=99  Identities=12%  Similarity=0.158  Sum_probs=71.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------cc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------EK  199 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------~~  199 (284)
                      +.++.+|||+|||+++++..+..+ ..++++|+++|+|+.+           + . .+++++++|+.+..        ..
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHHHHHhC
Confidence            478899999999998887665444 3456799999999864           2 1 36889999986532        12


Q ss_pred             CCCccEEEeccc---ccC-C------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAAL---VGM-S------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~---v~~-~------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.||+|+.+..   .+. .      .+...++++.+.+.|+|||++++..
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            346999997531   111 1      1234689999999999999999864

>PLN02672 methionine S-methyltransferase

Probab=99.06  E-value=1.4e-09  Score=115.56  Aligned_cols=111  Identities=22%  Similarity=0.212  Sum_probs=85.6

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------------CCCCeEEEEeccccc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--------------FEKRMKFVTCDIMQV  196 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--------------l~~~I~f~~~D~~~~  196 (284)
                      +.+|||+|||+ |.-++.+|+ ..+..+|+++|+|++|++.|+++++..+.              +.++++|+++|+.+.
T Consensus       119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence            46999999997 677888887 46678999999999999999999987641              235899999999875


Q ss_pred             cccCC-CccEEEecc-ccc------CChHH------------------------------HHHHHHHHHhhcCCCcEEEE
Q 036061          197 KEKLG-EYDCIFLAA-LVG------MSKEE------------------------------KVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       197 ~~~~~-~fD~V~~aa-~v~------~~~~~------------------------------k~~il~~l~~~l~pGg~lv~  238 (284)
                      ....+ +||+|+.+. +|.      |+++-                              ..+++++..++|+|||.+++
T Consensus       197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            53322 699998764 331      11111                              26788999999999999999


Q ss_pred             EecCc
Q 036061          239 RSAKG  243 (284)
Q Consensus       239 r~~~g  243 (284)
                      ..+.+
T Consensus       277 EiG~~  281 (1082)
T PLN02672        277 NMGGR  281 (1082)
T ss_pred             EECcc
Confidence            88643

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.03  E-value=3.2e-09  Score=93.58  Aligned_cols=106  Identities=10%  Similarity=0.101  Sum_probs=80.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      ..+.+|||+|||++.++...+++   ...+|+++|+|+++++.|+++++..| + ++++++++|+.+..... ..||+||
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHHhhcCCCceEEE
Confidence            45789999999986555445555   34799999999999999999999999 4 47999999998754322 3599999


Q ss_pred             ecccccCChHHHHHHHHHHHhh--cCCCcEEEEEec
Q 036061          208 LAALVGMSKEEKVKIIKHIRKY--MKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~--l~pGg~lv~r~~  241 (284)
                      ++.--.  ..-..++++.+...  ++|++++++...
T Consensus       127 ~DPPy~--~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        127 VDPPFR--KGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ECCCCC--CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            986421  13345566666654  799999988864

>PRK03612 spermidine synthase; Provisional

Probab=99.01  E-value=2.5e-09  Score=106.80  Aligned_cols=110  Identities=21%  Similarity=0.311  Sum_probs=81.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhc---CCCCCCeEEEEeccccccccC-C
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQI--VSSD---IEFEKRMKFVTCDIMQVKEKL-G  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~---G~l~~~I~f~~~D~~~~~~~~-~  201 (284)
                      +++++||+||||. |.++..+++  .++ .+|+.+|+|+++++.|+++  +...   ..-..+++++++|+.+..... +
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence            5789999999997 566666666  244 8999999999999999993  3221   111258999999998755432 4


Q ss_pred             CccEEEecccccCChH----HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKE----EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~----~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +||+|+++..-.....    -..++++.+.++|+|||++++...
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            7999998854211111    124689999999999999998653

>PLN02823 spermine synthase

Probab=99.01  E-value=2.3e-09  Score=101.45  Aligned_cols=110  Identities=20%  Similarity=0.278  Sum_probs=82.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEeccccccccC-CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--EFEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--~l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      ..+++||.||+|. |.++..+.+ +.+..+|+.+|+|++.++.|++.+...+  .-..|++++.+|+.+..... ++||+
T Consensus       102 ~~pk~VLiiGgG~-G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGGE-GSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCCc-hHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            4678999999995 666776666 4556789999999999999999875321  11479999999999876543 47999


Q ss_pred             EEecccccCC--hHH---HHHHHH-HHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMS--KEE---KVKIIK-HIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~--~~~---k~~il~-~l~~~l~pGg~lv~r~  240 (284)
                      ||++..-...  ...   -.++++ .+.+.|+|||++++..
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            9988532111  011   246787 8999999999998864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.00  E-value=1.3e-08  Score=99.76  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~  202 (284)
                      ...++.+|||+|||++ .-++.+|+   .+.+|+++|+|++|++.|+++++..| + ++++|+++|+.+....    .+.
T Consensus       294 ~~~~~~~VLDlgcGtG-~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        294 DPQPGDRVLDLFCGLG-NFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQPWALGG  367 (443)
T ss_pred             cCCCCCEEEEEeccCC-HHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhhhhhcCC
Confidence            3467789999999985 55677887   45899999999999999999999998 4 4799999999764321    246


Q ss_pred             ccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+++.- .|+     .++++.+.+ ++|++++.+.-
T Consensus       368 fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        368 FDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             CCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe
Confidence            999998853 232     245666665 58887766553

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.00  E-value=9.5e-09  Score=96.31  Aligned_cols=100  Identities=14%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V~  207 (284)
                      .++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.++... .+.||+|+
T Consensus       172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence            3578999999997 455688888   67899999999999999999999999 5 6899999999876542 24699999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ++.-- |+    ...+++.+.+ ++|++++.+.
T Consensus       246 ~dPPr~G~----~~~~~~~l~~-~~~~~ivyvs  273 (315)
T PRK03522        246 VNPPRRGI----GKELCDYLSQ-MAPRFILYSS  273 (315)
T ss_pred             ECCCCCCc----cHHHHHHHHH-cCCCeEEEEE
Confidence            88542 22    1234444443 5776655443

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.98  E-value=2.1e-09  Score=97.61  Aligned_cols=110  Identities=21%  Similarity=0.292  Sum_probs=83.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEeccccccccC-C-Ccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVKEKL-G-EYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~~~~-~-~fD  204 (284)
                      ..+++||.||.|. |.++..+.+ +.+-.+|+.+||||..++.|++.+.....  -..|++++.+|+....... + .||
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            5799999999996 556666666 45567999999999999999998865321  2479999999998876544 3 599


Q ss_pred             EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++..-......   -.++++.+.+.|+|||++++..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            99988753221122   3689999999999999999986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.92  E-value=8e-09  Score=95.60  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEeccccccccCC-CccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--EFEKRMKFVTCDIMQVKEKLG-EYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--~l~~~I~f~~~D~~~~~~~~~-~fD~  205 (284)
                      +.+++||.||.|.+ -++..+.+ +.+-.++|.+|||++.+++||+.+....  ....|++++.+|+.++..... .||+
T Consensus        75 ~~pk~VLiiGgGdG-~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          75 PNPKRVLIIGGGDG-GTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCeEEEECCCcc-HHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            45579999999975 55566666 5778999999999999999999986543  224899999999998877655 5999


Q ss_pred             EEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++.=+..+.   --.++++.+.+.|++||+++..+
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            999876321000   13689999999999999999994

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=2e-08  Score=90.09  Aligned_cols=100  Identities=27%  Similarity=0.395  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...+.++|+|||+|.+.+ ++.+++ .+|+.+++.+|. |+.++.+++        .+||+|+.||..+   ++..+|++
T Consensus        97 d~~~~~~vvDvGGG~G~~-~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~---~~P~~D~~  162 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHF-AIALAR-AYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD---PLPVADVY  162 (241)
T ss_dssp             TTTTSSEEEEET-TTSHH-HHHHHH-HSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT---CCSSESEE
T ss_pred             cccCccEEEeccCcchHH-HHHHHH-HCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh---hhccccce
Confidence            346778999999997554 555665 589999999999 899999998        3699999999973   23349999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCC--cEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDG--GVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pG--g~lv~r~  240 (284)
                      ++...+ .++.++-.++|+++++.|+||  |+|++-.
T Consensus       163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            988766 678888899999999999999  9988865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.88  E-value=2.4e-08  Score=87.23  Aligned_cols=107  Identities=11%  Similarity=0.028  Sum_probs=80.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---C-Cc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---G-EY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~-~f  203 (284)
                      ..+.+|||++||++.++ +.+++   .|+ +|+++|+|+.+++.++++++..| +.++++++++|+.+....+   . .|
T Consensus        48 ~~g~~vLDLfaGsG~lg-lea~s---rga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~  122 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLG-EEALS---RGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFD  122 (189)
T ss_pred             cCCCEEEEecCCCcHHH-HHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCc
Confidence            35789999999986555 44444   344 89999999999999999999999 6778999999997654322   2 38


Q ss_pred             cEEEecccccCChHHHHHHHHHHHh--hcCCCcEEEEEecC
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSAK  242 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~~  242 (284)
                      |+||++..-+.  ....++++.+..  .+++||.++++...
T Consensus       123 dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       123 NVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             eEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            99998875422  234455665544  68999999998754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.87  E-value=2.4e-08  Score=97.36  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~f  203 (284)
                      ..++.+|||+|||+ |..++.+|+   ...+|+++|+|++|++.|+++++..| + ++++|+++|+.+....    ...|
T Consensus       290 ~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~~~~~~  363 (431)
T TIGR00479       290 LQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPWAGQIP  363 (431)
T ss_pred             cCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHhcCCCC
Confidence            45678999999997 566677888   45789999999999999999999998 4 6899999999764322    2359


Q ss_pred             cEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          204 DCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       204 D~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      |+|+++.- .|+    ..++++.+.+ ++|++.+.+
T Consensus       364 D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       364 DVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             CEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence            99998764 232    2456666654 788876554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.86  E-value=8e-09  Score=87.60  Aligned_cols=79  Identities=14%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             EEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          160 DNFDIDEAANDVARQIVSS--DIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       160 ~~iDid~~ai~~Ar~~~~~--~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +|+|+|++|++.|++..+.  .+ ...+|+|+++|+.+++...+.||+|++...+. ..+++.+++++++|.|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEE
Confidence            5899999999999877653  22 23589999999999887777899998654332 22678899999999999999998


Q ss_pred             EEe
Q 036061          238 VRS  240 (284)
Q Consensus       238 ~r~  240 (284)
                      +.+
T Consensus        79 i~d   81 (160)
T PLN02232         79 ILD   81 (160)
T ss_pred             EEE
Confidence            765

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.86  E-value=2.9e-08  Score=97.93  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=87.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      .+.++.+|||+++||+|=|+.+ |..+.....|++.|+++..++..+++++++|.  .+|.+.+.|+..+.... +.||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~l-a~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQI-AALMNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHH-HHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCe
Confidence            4578899999999998887664 54344457999999999999999999999994  56899999987654333 36999


Q ss_pred             EEecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++--   |+   +++.               ..++|++.++.|||||+|++.+
T Consensus       187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            9988732   32   1111               1789999999999999999876

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=4.5e-08  Score=85.10  Aligned_cols=78  Identities=24%  Similarity=0.391  Sum_probs=61.2

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      .+.-.++.|+|+|||+ |.=++-.+-  +.-.+|+|+|+||++++.+++++.+++   .+++|+++|+.+..   ..||.
T Consensus        41 ~g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dt  111 (198)
T COG2263          41 RGDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDT  111 (198)
T ss_pred             cCCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---Cccce
Confidence            3567889999999998 444443332  334789999999999999999999955   48999999997643   57899


Q ss_pred             EEecccc
Q 036061          206 IFLAALV  212 (284)
Q Consensus       206 V~~aa~v  212 (284)
                      |+++.--
T Consensus       112 vimNPPF  118 (198)
T COG2263         112 VIMNPPF  118 (198)
T ss_pred             EEECCCC
Confidence            9888643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.85  E-value=3.6e-08  Score=94.60  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=77.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      .++.+|||+|||.+ .-++.+|.   .+.+|++||+|+.|++.|+++++..| + ++++|+++|+.+..... ++||+|+
T Consensus       232 ~~~~~vLDL~cG~G-~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       232 IPVTQMWDLFCGVG-GFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             cCCCEEEEccCCcc-HHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence            45689999999975 45566776   67899999999999999999999999 4 48999999998755433 4699999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.-- |+    ..++++.+.+ ++|++++.+.-
T Consensus       306 ~DPPr~G~----~~~~l~~l~~-~~p~~ivyvsc  334 (374)
T TIGR02085       306 VNPPRRGI----GKELCDYLSQ-MAPKFILYSSC  334 (374)
T ss_pred             ECCCCCCC----cHHHHHHHHh-cCCCeEEEEEe
Confidence            98642 32    2456666654 68887766654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.84  E-value=2.7e-08  Score=92.32  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .-.+++|||||||. |+=+..|++   .|+ .|+|||.++.-.-..+-+-+-+| ....+.+.---+.+++. .+.||+|
T Consensus       113 ~L~gk~VLDIGC~n-GY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~-~~~FDtV  186 (315)
T PF08003_consen  113 DLKGKRVLDIGCNN-GYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN-LGAFDTV  186 (315)
T ss_pred             CcCCCEEEEecCCC-cHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc-cCCcCEE
Confidence            46889999999997 666777776   555 59999999988777666666666 33344444334555565 6789999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.... -+..+....|.++...|+|||.+++.+
T Consensus       187 F~MGVL-YHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  187 FSMGVL-YHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEeeeh-hccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            977543 234667889999999999999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.84  E-value=4.6e-08  Score=92.09  Aligned_cols=111  Identities=16%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCccccccc-CCCcchhhhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061           97 PQPLNNLNL-FPYYGNYVKLANLEYRILD--ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR  173 (284)
Q Consensus        97 ~~p~~~L~~-fpy~~ny~~l~~~E~~~l~--~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar  173 (284)
                      +.|-.+|.. -|.--||+.-+...+....  ......+.++||||||++++..++.++  .++++|+|+|||+.|++.|+
T Consensus        78 dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~--~~~~~~~atDId~~Al~~A~  155 (321)
T PRK11727         78 DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH--EYGWRFVGSDIDPQALASAQ  155 (321)
T ss_pred             cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHH
Confidence            456666643 3766778755543221100  011135689999999987676665544  57999999999999999999


Q ss_pred             HHHHhc-CCCCCCeEEEE-eccccccc----cCCCccEEEecc
Q 036061          174 QIVSSD-IEFEKRMKFVT-CDIMQVKE----KLGEYDCIFLAA  210 (284)
Q Consensus       174 ~~~~~~-G~l~~~I~f~~-~D~~~~~~----~~~~fD~V~~aa  210 (284)
                      ++++.. + ++++|+++. .|..++..    ..+.||+|+.+.
T Consensus       156 ~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNP  197 (321)
T PRK11727        156 AIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNP  197 (321)
T ss_pred             HHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEEEEeCC
Confidence            999999 7 788999964 44443332    234799999876

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.80  E-value=3.4e-08  Score=95.14  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----CCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL----GEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~----~~f  203 (284)
                      ..+++||++=|=++|.| +..|.   .|+ +||+||+|..++++|+++++-.|.-.+++.|+++|+.++....    .+|
T Consensus       216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            34999999999876654 55555   788 9999999999999999999999954678999999999876533    269


Q ss_pred             cEEEeccc--c---cCC---hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          204 DCIFLAAL--V---GMS---KEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       204 D~V~~aa~--v---~~~---~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |+|+++.-  .   .+.   ..++.+++....+.|+|||++++-+.++
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99999863  2   111   2456889999999999999999988543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.80  E-value=1.4e-08  Score=86.76  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC--C-ccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG--E-YDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~--~-fD~V~~  208 (284)
                      +.|+|+.||. |..++.+|+   ...+|++||+||..++.|+.+++..| ++++|+|+++|..++.....  . ||+||+
T Consensus         1 ~~vlD~fcG~-GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCGV-GGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-TT-SHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccCc-CHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            3689999995 678899999   57899999999999999999999999 79999999999998765543  2 899998


Q ss_pred             cccc
Q 036061          209 AALV  212 (284)
Q Consensus       209 aa~v  212 (284)
                      +.--
T Consensus        76 SPPW   79 (163)
T PF09445_consen   76 SPPW   79 (163)
T ss_dssp             ---B
T ss_pred             CCCC
Confidence            8643

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.78  E-value=1.1e-07  Score=86.76  Aligned_cols=112  Identities=13%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE----Eecccccc-ccCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV----TCDIMQVK-EKLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~----~~D~~~~~-~~~~  201 (284)
                      .-..+..+||+|||.+.++.-+++.  .+.++|++||.|+.|+.+|.+|+.+++ +..++..+    ++|..+-- ..++
T Consensus       145 ~~~~~~~ildlgtGSGaIslsll~~--L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~~me~d~~~~~~l~~~  221 (328)
T KOG2904|consen  145 EHSKHTHILDLGTGSGAISLSLLHG--LPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHNIMESDASDEHPLLEG  221 (328)
T ss_pred             hhcccceEEEecCCccHHHHHHHhc--CCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEecccccccccccccccC
Confidence            3456679999999987666555544  779999999999999999999999999 79999998    45554322 2235


Q ss_pred             CccEEEecc-cccC-Ch----------HH-------------HHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAA-LVGM-SK----------EE-------------KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa-~v~~-~~----------~~-------------k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+|+++.+. +|.- +.          |+             ...++.-.-|.|+|||.+.+...
T Consensus       222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            789887664 3411 11          11             15566777889999999988764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.78  E-value=4.2e-08  Score=86.15  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=81.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V~~  208 (284)
                      .-++|||||. |--.+.+|+ ..|+..++|||+....+..|.+.+.+.|.  +++.++++|+..+..   +.+..|-|++
T Consensus        19 ~l~lEIG~G~-G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   19 PLILEIGCGK-GEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             EEEEEET-TT-SHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CeEEEecCCC-CHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEE
Confidence            3999999996 566777887 58999999999999999999999999985  799999999987443   2357899987


Q ss_pred             cccccCChHH--H-----HHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEE--K-----VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~--k-----~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..--.|++..  |     ..+++.+++.|+|||.|-+++-
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            6543343211  1     6799999999999999999884

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.77  E-value=5e-08  Score=84.87  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-c-ccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-K-EKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~-~~~~~fD~V  206 (284)
                      .++.+|||||||++.+ +..+++  ..+..++|+|+++++++.|++         .+++++++|+.+. + ...+.||+|
T Consensus        12 ~~~~~iLDiGcG~G~~-~~~l~~--~~~~~~~giD~s~~~i~~a~~---------~~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGEL-LALLRD--EKQVRGYGIEIDQDGVLACVA---------RGVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHH-HHHHHh--ccCCcEEEEeCCHHHHHHHHH---------cCCeEEEEEhhhcccccCCCCcCEE
Confidence            5678999999998554 566665  257789999999999998864         2468999998752 2 233579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKD  232 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~p  232 (284)
                      ++...++ ...+..++++++.+.+++
T Consensus        80 i~~~~l~-~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        80 ILSQTLQ-ATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence            9775442 225677788998887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.76  E-value=7.7e-08  Score=83.84  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=82.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      .+++||||| .|+.++.||= .+|..+|+-+|....-+..-+..++++| + ++++++++.+.+ ......||+|+.=|.
T Consensus        50 ~~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   50 KKVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             SEEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             ceEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehh
Confidence            389999999 4899999987 6899999999999999999999999999 4 589999999987 333457999986555


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                           .+-..+++-+.+.+++||.+++--+
T Consensus       125 -----~~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  125 -----APLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             -----SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             -----cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence                 3455789999999999999888754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.75  E-value=5.1e-09  Score=82.17  Aligned_cols=101  Identities=18%  Similarity=0.256  Sum_probs=49.3

Q ss_pred             EEeccCCChhHHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecc
Q 036061          135 AFVGSGPMPLTSIVMAKNHLKST--HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAA  210 (284)
Q Consensus       135 L~IGsG~lp~tai~LA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa  210 (284)
                      ++||+. .|.|++++++...++.  +++++|..+. .+.+++.+++.+ +.++++++.+|..+....+  ..||++|+++
T Consensus         1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            689987 5789999988544444  7999999997 566677777777 6789999999998765444  4799999997


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..  +.+...+-++.+.++|+|||++++.+
T Consensus        78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DH--SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            53  23666778999999999999999875

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.73  E-value=5.9e-08  Score=85.64  Aligned_cols=110  Identities=20%  Similarity=0.311  Sum_probs=77.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc
Q 036061          117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV  196 (284)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~  196 (284)
                      ..|..-+.+. ..++..|+|.-||-+|+ ++.+|+ +..+..|+++|++|.|++..+++++..+ ++++|..+++|+.++
T Consensus        89 ~~Er~Ri~~~-v~~~e~VlD~faGIG~f-~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~  164 (200)
T PF02475_consen   89 STERRRIANL-VKPGEVVLDMFAGIGPF-SLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREF  164 (200)
T ss_dssp             HHHHHHHHTC---TT-EEEETT-TTTTT-HHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG-
T ss_pred             HHHHHHHHhc-CCcceEEEEccCCccHH-HHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHh
Confidence            3465555443 57899999999996555 566777 4678899999999999999999999999 799999999999988


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEE
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~l  236 (284)
                      .. ...||.|++...     +.-.+++....+.+++||++
T Consensus       165 ~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  165 LP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             ---TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEE
T ss_pred             cC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEE
Confidence            76 457999987533     22236888999999999986

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PHA03411 putative methyltransferase; Provisional

Probab=98.72  E-value=7e-08  Score=88.85  Aligned_cols=102  Identities=10%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|||+|||++.++ +.+++ ..++.+|+++|+|+++++.|+++.       .+++++++|+.+... ...||+|+.
T Consensus        63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs  132 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS  132 (279)
T ss_pred             ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence            34579999999986554 44444 245789999999999999999852       268999999987653 247999998


Q ss_pred             ccc-ccCChHHH------------------HHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AAL-VGMSKEEK------------------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~-v~~~~~~k------------------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.- ...+..++                  .+++......|+|+|.+.+..
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            653 22222211                  356677788888998766653

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.71  E-value=1.1e-07  Score=88.52  Aligned_cols=83  Identities=18%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL----  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~----  200 (284)
                      .+.+.++..++|.+||.+|.|...+.. ..++++|+|+|+|++|++.|++.+.. +   ++++++++|..++...+    
T Consensus        14 ~L~~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~   88 (296)
T PRK00050         14 ALAIKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGL   88 (296)
T ss_pred             hhCCCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCC
Confidence            335577889999999988877665543 33468999999999999999998765 3   59999999998764322    


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      ..+|.|+++-.+
T Consensus        89 ~~vDgIl~DLGv  100 (296)
T PRK00050         89 GKVDGILLDLGV  100 (296)
T ss_pred             CccCEEEECCCc
Confidence            269999877654

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=2.9e-07  Score=87.88  Aligned_cols=112  Identities=19%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---Cc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~f  203 (284)
                      .+.++.+|||..++|+|=|+.+.+.-...|..|+++|+|+..++.-+++++++|. . ++..++.|....+....   .|
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~-nv~~~~~d~~~~~~~~~~~~~f  230 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-R-NVIVVNKDARRLAELLPGGEKF  230 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-C-ceEEEecccccccccccccCcC
Confidence            4689999999999999988775544112367889999999999999999999994 4 48888888875543322   49


Q ss_pred             cEEEecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|++++--   |.   +++-               -.++|++.++.+||||.|++.+
T Consensus       231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            999988721   22   1111               2789999999999999999977

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=1.9e-07  Score=82.11  Aligned_cols=118  Identities=18%  Similarity=0.293  Sum_probs=74.2

Q ss_pred             CCCCCEEEEeccCCC--hhHHHHHHhhc-----CCCcEEEEEeCChHHHHHHHHHH--------------Hh-----cCC
Q 036061          128 VVNPKKVAFVGSGPM--PLTSIVMAKNH-----LKSTHFDNFDIDEAANDVARQIV--------------SS-----DIE  181 (284)
Q Consensus       128 ~~~~~~VL~IGsG~l--p~tai~LA~~~-----~~g~~V~~iDid~~ai~~Ar~~~--------------~~-----~G~  181 (284)
                      ..++-||.-.||+++  |+|..++....     ....+|+|.|||+.+++.|++=+              ++     .|.
T Consensus        29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~  108 (196)
T PF01739_consen   29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG  108 (196)
T ss_dssp             S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence            357789999999964  45544444321     11479999999999999998622              00     110


Q ss_pred             -------CCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCccc
Q 036061          182 -------FEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGAR  245 (284)
Q Consensus       182 -------l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr  245 (284)
                             +.++|+|...|+.+.....+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..+.
T Consensus       109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~  180 (196)
T PF01739_consen  109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP  180 (196)
T ss_dssp             CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred             ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence                   23789999999988344456899999654 34678899999999999999999999998765543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.5e-07  Score=81.65  Aligned_cols=112  Identities=19%  Similarity=0.233  Sum_probs=84.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEeccccccc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDI--------EFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G--------~l~~~I~f~~~D~~~~~~  198 (284)
                      +.++.+.|+||||++-+|+ ++|+-. .+|..++|||.-|+-++.+++++++.-        .-..+..|++||......
T Consensus        80 L~pG~s~LdvGsGSGYLt~-~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTA-CFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCccHHHH-HHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            5899999999999865554 566422 355666999999999999999997642        113578899999998777


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-Cccccc
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-KGARAF  247 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-~glr~~  247 (284)
                      +..+||.|++-|.+       .++.+.+.+.|+|||.+++--. .+.-+.
T Consensus       159 e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~~~~~~q~  201 (237)
T KOG1661|consen  159 EQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPVGQDGGTQY  201 (237)
T ss_pred             ccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEeecccCceeE
Confidence            77899999987765       2344667778899998887554 344443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.66  E-value=3.4e-07  Score=85.32  Aligned_cols=79  Identities=11%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|+|||||++.+|. .+++   .+.+|+++|+|+++++.+++.+...| ..++++++++|+.+..  +..||
T Consensus        31 ~~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~--~~~~d  103 (294)
T PTZ00338         31 KAAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTE--FPYFD  103 (294)
T ss_pred             hcCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhc--ccccC
Confidence            3356788999999999876665 4555   46789999999999999999998877 4678999999997643  45799


Q ss_pred             EEEecc
Q 036061          205 CIFLAA  210 (284)
Q Consensus       205 ~V~~aa  210 (284)
                      .|+.+.
T Consensus       104 ~VvaNl  109 (294)
T PTZ00338        104 VCVANV  109 (294)
T ss_pred             EEEecC
Confidence            988654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.66  E-value=3.5e-07  Score=80.74  Aligned_cols=120  Identities=14%  Similarity=0.162  Sum_probs=89.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          118 LEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       118 ~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      ...+.|.++....+.+||+||||+ |-=+.++|+ ++|..+-.--|.|+....--+..+...| +.+--.=+.-|+.+-.
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCC
Confidence            345556665545555799999997 788999998 7999999999999999877777777777 3322233455665433


Q ss_pred             ccCC--------CccEEEeccccc-CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLG--------EYDCIFLAALVG-MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~--------~fD~V~~aa~v~-~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++.        .||.||.+.+++ ++-+.-+.+++...+.|+|||.|++-.
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            3333        799999887763 466778899999999999999998843

The function of this family is unknown.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.65  E-value=1.1e-06  Score=79.69  Aligned_cols=90  Identities=18%  Similarity=0.322  Sum_probs=62.1

Q ss_pred             chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061          110 GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~  189 (284)
                      +||..--..-..++......++.+|||||||++.+|.. |++   .+.+|+++|+|+++++.+++.+..    ..+++++
T Consensus         9 q~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~-L~~---~~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~   80 (253)
T TIGR00755         9 QNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEP-LLK---RAKKVTAIEIDPRLAEILRKLLSL----YERLEVI   80 (253)
T ss_pred             CccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHH-HHH---hCCcEEEEECCHHHHHHHHHHhCc----CCcEEEE
Confidence            45542222222333344567889999999998766654 555   345799999999999999987643    2589999


Q ss_pred             EeccccccccCCCcc---EEEec
Q 036061          190 TCDIMQVKEKLGEYD---CIFLA  209 (284)
Q Consensus       190 ~~D~~~~~~~~~~fD---~V~~a  209 (284)
                      ++|+.+.+..  .||   .|+.+
T Consensus        81 ~~D~~~~~~~--~~d~~~~vvsN  101 (253)
T TIGR00755        81 EGDALKVDLP--DFPKQLKVVSN  101 (253)
T ss_pred             ECchhcCChh--HcCCcceEEEc
Confidence            9999876543  466   55533

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.64  E-value=3.3e-08  Score=88.25  Aligned_cols=147  Identities=16%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KL  200 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~  200 (284)
                      +.+....+=+++||+|||+ |++..-|-.   .-.+.+|+|||+.|+++|.+   +-+ . +  +..++|+..+..  ..
T Consensus       118 I~~~~~g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~e---Kg~-Y-D--~L~~Aea~~Fl~~~~~  186 (287)
T COG4976         118 IGKADLGPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHE---KGL-Y-D--TLYVAEAVLFLEDLTQ  186 (287)
T ss_pred             HHhccCCccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHh---ccc-h-H--HHHHHHHHHHhhhccC
Confidence            3344445568999999997 788777754   45679999999999999987   322 1 1  344566654443  23


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec----CccccccCccCC---Cc-------cCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA----KGARAFLYPVVE---KH-------DLLDFELLSVF  266 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~----~glr~~lYp~v~---~~-------dl~gfe~~~~~  266 (284)
                      ..||+|. ++-|-+....-..++.-+...|+|||.|.+...    +| +-.+-|...   .+       .-.||+++...
T Consensus       187 er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         187 ERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             Ccccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-CeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            4699986 555545557788999999999999999999773    22 122333221   11       22799998875


Q ss_pred             cC------CcceeeeEEEEeec
Q 036061          267 HP------TNEVINSVVLVRKP  282 (284)
Q Consensus       267 hP------~~~v~nsvi~~r~~  282 (284)
                      .-      ..+|-.-.+++||+
T Consensus       265 ~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         265 DTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             cccchhhcCCCCCCceEEEecC
Confidence            42      22366668888885

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.64  E-value=2.5e-07  Score=79.61  Aligned_cols=110  Identities=17%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEecccccc----ccCCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI-EFEKRMKFVTCDIMQVK----EKLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-~l~~~I~f~~~D~~~~~----~~~~~  202 (284)
                      ..++++||++|||+ |+.++.+|+ ...+.+|+.-|.++ .++..+.+++..+ ....++++..-|..+-.    .....
T Consensus        43 ~~~~~~VLELGaG~-Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~  119 (173)
T PF10294_consen   43 LFRGKRVLELGAGT-GLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS  119 (173)
T ss_dssp             GTTTSEEEETT-TT-SHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred             hcCCceEEEECCcc-chhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence            36789999999995 899999998 33688999999999 9999999999865 12468888887754311    12247


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|+.+-.+ ...+.-..++.-+.+.++|+|.+++-..
T Consensus       120 ~D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  120 FDVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             BSEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             CCEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            9999855433 3457778899999999999998776553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.63  E-value=1.3e-07  Score=82.37  Aligned_cols=109  Identities=12%  Similarity=0.204  Sum_probs=81.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD  204 (284)
                      -.+.++||+=||++.+..-.|.+   .-.+|+.||.|+++++..+++++.+| ..++++++++|+......    ...||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhhcccCCCce
Confidence            47899999988887777666665   44689999999999999999999999 678899999998755432    35799


Q ss_pred             EEEecccccCChHH-HHHHHHHHH--hhcCCCcEEEEEecCc
Q 036061          205 CIFLAALVGMSKEE-KVKIIKHIR--KYMKDGGVLLVRSAKG  243 (284)
Q Consensus       205 ~V~~aa~v~~~~~~-k~~il~~l~--~~l~pGg~lv~r~~~g  243 (284)
                      +||++.--..  .. ..++++.+.  ..|+++|++++.....
T Consensus       117 iIflDPPY~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  117 IIFLDPPYAK--GLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEE--STTS--CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             EEEECCCccc--chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            9999974322  33 477888887  7999999999998543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.63  E-value=2.8e-07  Score=83.16  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .+.+|||+|||++ .-++.+++..  .+..+|+++|+|+.|++.|++++       .++.++++|+.+... .+.||+|+
T Consensus        49 ~~grVLDlG~GSG-~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGIG-GLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAI  119 (241)
T ss_pred             CCCEEEEccChHH-HHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEE
Confidence            4679999999974 4456666522  14679999999999999999864       257899999976443 34799999


Q ss_pred             eccc-ccCCh----------HHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAAL-VGMSK----------EEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~-v~~~~----------~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .+.- .....          ..-.++++...+.+++|+. |+
T Consensus       120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            8762 21111          1235588888887666665 44

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.62  E-value=3.4e-07  Score=82.34  Aligned_cols=107  Identities=22%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CCccEEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GEYDCIF  207 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~fD~V~  207 (284)
                      ...+++|||| .|-..+.+|+ ..|...+.|||+....+..|.+.+.+.|+  ++++++++|+.++...+   ++.|-|+
T Consensus        49 ~pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             CcEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            3689999999 5777788898 68999999999999999999999999994  49999999999876533   3789888


Q ss_pred             ecccccCChHHH-------HHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGMSKEEK-------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k-------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.---.|++.-.       ..+++.+++.|+|||.|-+.+-
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            776556654332       6789999999999999999884

>PRK00536 speE spermidine synthase; Provisional

Probab=98.62  E-value=3.8e-07  Score=83.65  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=75.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..|+|||.||+|- |.++.-+.| | + .+|+-+|||++.++.|++.+-..  +.-..|++++. ...+  ...+.||+|
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLk-h-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHC-c-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEE
Confidence            6789999999997 556777777 2 3 49999999999999999954321  21246888875 2221  112579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++++-      ...+++.+.+.|+|||++++.++
T Consensus       144 IvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        144 ICLQEP------DIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEcCCC------ChHHHHHHHHhcCCCcEEEECCC
Confidence            999763      14677999999999999999774

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.62  E-value=4.6e-07  Score=82.60  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||++.+| ..+++   .+.+|+++|+|+.+++.+++.+...    .+++++++|+.+++  +..||.
T Consensus        25 ~~~~~~~~VLEIG~G~G~lt-~~L~~---~~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~   94 (258)
T PRK14896         25 AEDTDGDPVLEIGPGKGALT-DELAK---RAKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK   94 (258)
T ss_pred             cCCCCcCeEEEEeCccCHHH-HHHHH---hCCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence            35567899999999986555 55666   3679999999999999999987542    48999999998754  346898


Q ss_pred             EEecc
Q 036061          206 IFLAA  210 (284)
Q Consensus       206 V~~aa  210 (284)
                      |+.+.
T Consensus        95 Vv~Nl   99 (258)
T PRK14896         95 VVSNL   99 (258)
T ss_pred             EEEcC
Confidence            88653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.61  E-value=1.7e-07  Score=91.95  Aligned_cols=126  Identities=17%  Similarity=0.238  Sum_probs=85.9

Q ss_pred             CCcchhhhhhHHHHHHHHhcCCC-----CCCEEEEeccCCChhHHHHHHh--hcCCCcEEEEEeCChHHHHHHHHHHHhc
Q 036061          107 PYYGNYVKLANLEYRILDENGVV-----NPKKVAFVGSGPMPLTSIVMAK--NHLKSTHFDNFDIDEAANDVARQIVSSD  179 (284)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~-----~~~~VL~IGsG~lp~tai~LA~--~~~~g~~V~~iDid~~ai~~Ar~~~~~~  179 (284)
                      -.|+.|++-+..   +|......     ++..|++||||.||++...+..  ++....+|.+|+.++.|+...++.+++.
T Consensus       161 vKY~~Ye~AI~~---al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n  237 (448)
T PF05185_consen  161 VKYDQYERAIEE---ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN  237 (448)
T ss_dssp             HHHHHHHHHHHH---HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH---HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc
Confidence            355667766533   22222222     3578999999999997554422  1123468999999999999999988888


Q ss_pred             CCCCCCeEEEEeccccccccCCCccEEEeccc--ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          180 IEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL--VGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       180 G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~--v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      | ++++|+++.+|.+++..+. ..|+|+..-+  .| +-|--.+.+....|.|||||+++=
T Consensus       238 ~-w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  238 G-WGDKVTVIHGDMREVELPE-KVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             T-TTTTEEEEES-TTTSCHSS--EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             C-CCCeEEEEeCcccCCCCCC-ceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEeC
Confidence            8 7999999999999877643 7999974322  12 223445688999999999998764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.60  E-value=2.9e-07  Score=88.76  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=78.8

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +.+|||++||.+.+ ++.+|+. ....+|+++|+|+++++.++++++..| + +.+++.++|+.++......||+|+++.
T Consensus        58 ~~~vLDl~aGsG~~-~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSASGIR-GIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcccHH-HHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence            46999999997554 5666652 233589999999999999999999998 4 467899999977554234699999987


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      . |.    ...+++...+.+++||++.+..
T Consensus       134 ~-Gs----~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        134 F-GS----PAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence            5 43    2467888777889999998864

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=2e-07  Score=83.81  Aligned_cols=119  Identities=24%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061          117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM  194 (284)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~  194 (284)
                      ..|+..|.......+.+||+||||. |-|..-+-+ ..++  -.|.+.|.||.|++.-++.....   ++++.--+.|++
T Consensus        58 ~~Efpel~~~~~~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---e~~~~afv~Dlt  132 (264)
T KOG2361|consen   58 LREFPELLPVDEKSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYD---ESRVEAFVWDLT  132 (264)
T ss_pred             HHhhHHhhCccccChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccc---hhhhcccceecc
Confidence            3456655555555556999999995 566665555 3444  88999999999999999866543   356666666665


Q ss_pred             ccc----ccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVK----EKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~----~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-.    ...+.+|.+.+-- +-..+++.-..+++.+.+++||||.|++|+
T Consensus       133 ~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  133 SPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             chhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            311    1224688764221 112345667889999999999999999997

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.59  E-value=2.9e-07  Score=85.38  Aligned_cols=108  Identities=20%  Similarity=0.276  Sum_probs=79.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc---CCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK---LGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~---~~~f  203 (284)
                      ..+++||++=|=++|+|.. .|+   .|+ +|+++|.|..++++|+++++-.| +. ++++|+++|+.+....   .+.|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence            4689999999988777643 334   566 79999999999999999999999 44 7999999999875432   3579


Q ss_pred             cEEEeccc--c-cC--ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAAL--V-GM--SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~--v-~~--~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.-  . +-  -..++.+++..+.+.++|||.|++-+-
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            99998862  2 11  124567899999999999999887663

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.58  E-value=7.7e-07  Score=77.02  Aligned_cols=122  Identities=18%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             hcCCCCCCEEEEeccCCC--hhHHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          125 ENGVVNPKKVAFVGSGPM--PLTSIVMAKNHLK-----STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~l--p~tai~LA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      -.+..++..|+|--||++  ++-+..++....+     ..++.|.|+|+++++.|+++++..| +...|.|.++|+.+++
T Consensus        23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~l~  101 (179)
T PF01170_consen   23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARELP  101 (179)
T ss_dssp             HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGGGG
T ss_pred             HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhhcc
Confidence            345678889999877754  3333333331110     1138999999999999999999999 7889999999999988


Q ss_pred             ccCCCccEEEecccccCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061          198 EKLGEYDCIFLAALVGMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKGARAF  247 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~glr~~  247 (284)
                      ...+.+|+|+.+.--|.-.       .-+.++++++.+.+++..++++.....+...
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~  158 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKA  158 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHH
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            5456799999886433211       2236778999999999666666654444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.57  E-value=8.9e-07  Score=73.33  Aligned_cols=94  Identities=15%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      .++.+|++||||.+.-.|..|++   .|..|+++|+||++++.|+++    +     ++++++|+.+-...+ ..+|+|+
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEEE
Confidence            45689999999953337778887   799999999999999988773    3     589999998755554 4799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....    +.+-..-+..+++.+.  +-++++.
T Consensus        83 sirp----p~el~~~~~~la~~~~--~~~~i~~  109 (134)
T PRK04148         83 SIRP----PRDLQPFILELAKKIN--VPLIIKP  109 (134)
T ss_pred             EeCC----CHHHHHHHHHHHHHcC--CCEEEEc
Confidence            5543    2556666777777654  4555554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.57  E-value=4.1e-07  Score=79.46  Aligned_cols=88  Identities=11%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~  205 (284)
                      +.+++||||+|||.+-+- .+|.+  ..+++..|+|+|++.+..+.+         +.+.++++|+.+-..  +.+.||.
T Consensus        11 I~pgsrVLDLGCGdG~LL-~~L~~--~k~v~g~GvEid~~~v~~cv~---------rGv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELL-AYLKD--EKQVDGYGVEIDPDNVAACVA---------RGVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHH-HHHHH--hcCCeEEEEecCHHHHHHHHH---------cCCCEEECCHHHhHhhCCCCCccE
Confidence            478999999999975443 33433  479999999999999877765         356899999976553  3457999


Q ss_pred             EEecccc-cCChHHHHHHHHHHHhh
Q 036061          206 IFLAALV-GMSKEEKVKIIKHIRKY  229 (284)
Q Consensus       206 V~~aa~v-~~~~~~k~~il~~l~~~  229 (284)
                      |+++..+ .+  ....++|+++.|.
T Consensus        79 VIlsqtLQ~~--~~P~~vL~EmlRV  101 (193)
T PF07021_consen   79 VILSQTLQAV--RRPDEVLEEMLRV  101 (193)
T ss_pred             EehHhHHHhH--hHHHHHHHHHHHh
Confidence            9988755 32  4456788998776

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.57  E-value=3.7e-07  Score=82.15  Aligned_cols=108  Identities=19%  Similarity=0.347  Sum_probs=75.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC------------------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK------------------------  184 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~------------------------  184 (284)
                      -.+..+|||||-. |.-++.+|+ .+..-.|.|+|||+..++.|++.++.--..+.                        
T Consensus        57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            4678999999986 666778898 44445699999999999999998865321111                        


Q ss_pred             ---------CeEE-------EEeccccccccCCCccEEEeccc---c--cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          185 ---------RMKF-------VTCDIMQVKEKLGEYDCIFLAAL---V--GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       185 ---------~I~f-------~~~D~~~~~~~~~~fD~V~~aa~---v--~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                               ++.|       ...|..  ......||+|+.-+.   |  .+..+--.+++..++++|.|||+||+.-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                     1111       111211  112347999985542   3  3445666789999999999999999964

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.57  E-value=3.8e-07  Score=86.31  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------CCCCeEEEEecccccc----
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--------FEKRMKFVTCDIMQVK----  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--------l~~~I~f~~~D~~~~~----  197 (284)
                      ++.+|||+|||-+|..-=|. +  ..-..++|+||++++++.|++..+.+..        ..-...|+++|.....    
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~-~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQ-K--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHH-H--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred             CCCeEEEecCCCchhHHHHH-h--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence            78999999999877654443 3  2457899999999999999998833210        1124578888886421    


Q ss_pred             -cc-CCCccEEEecc-cc-cCChHHHHH-HHHHHHhhcCCCcEEEEEecC
Q 036061          198 -EK-LGEYDCIFLAA-LV-GMSKEEKVK-IIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       198 -~~-~~~fD~V~~aa-~v-~~~~~~k~~-il~~l~~~l~pGg~lv~r~~~  242 (284)
                       .+ ...||+|=... +. ....+++.+ +|+.+.+.|+|||+++....+
T Consensus       139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence             11 13799994332 22 233355555 999999999999999997754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.57  E-value=5.8e-07  Score=86.00  Aligned_cols=96  Identities=10%  Similarity=0.194  Sum_probs=71.0

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----------
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL----------  200 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~----------  200 (284)
                      +.+|||++||.+.++ +.+|+   ...+|++||+|+.|++.|+++++..| + ++++|+++|+.+....+          
T Consensus       207 ~~~vLDl~~G~G~~s-l~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNFT-LALAR---NFRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHHH-HHHHh---hCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence            468999999985554 58887   34689999999999999999999999 4 58999999998754321          


Q ss_pred             ------CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          201 ------GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       201 ------~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                            ..||+||++.-= |+    ..++++.+.+   |++++.+.
T Consensus       281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYIS  319 (362)
T ss_pred             cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEE
Confidence                  148999998642 32    3456666654   55554443

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.55  E-value=2.7e-07  Score=85.64  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=84.2

Q ss_pred             CCCEEEEeccCCC--hhHHHHHHhhcC----CCcEEEEEeCChHHHHHHHHHH------------------Hhc-----C
Q 036061          130 NPKKVAFVGSGPM--PLTSIVMAKNHL----KSTHFDNFDIDEAANDVARQIV------------------SSD-----I  180 (284)
Q Consensus       130 ~~~~VL~IGsG~l--p~tai~LA~~~~----~g~~V~~iDid~~ai~~Ar~~~------------------~~~-----G  180 (284)
                      .+-||.-.||+++  |+|-.++.....    .+.+|+|.|||+.+++.|++-+                  .+.     |
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            3579999999864  455444333221    1478999999999999999752                  110     1


Q ss_pred             ------CCCCCeEEEEecccccccc-CCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          181 ------EFEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       181 ------~l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                            .+.++|+|...|+.+.+.+ .+.||+|+.-. ++..+.+.+.++++.+++.|+|||.|++-....+
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl  266 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF  266 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence                  0347899999999874332 46899999643 4466889999999999999999999988765544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.53  E-value=1e-06  Score=84.00  Aligned_cols=96  Identities=10%  Similarity=0.161  Sum_probs=70.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------C---C
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------L---G  201 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~---~  201 (284)
                      +.+|||+|||++ .-++.||+   ...+|+++|++++|++.|+++++..| + ++++|+++|+.++...      +   +
T Consensus       198 ~~~vlDl~~G~G-~~sl~la~---~~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGNG-NFSLALAQ---NFRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEecccc-HHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence            357999999975 55568888   23589999999999999999999999 4 4799999999875542      1   1


Q ss_pred             -------CccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          202 -------EYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       202 -------~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                             .||+||++.- .|+    ..++++.+.+   |++++.+.
T Consensus       272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEE
Confidence                   3899999864 232    2345566554   55554443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.52  E-value=9.2e-08  Score=85.65  Aligned_cols=137  Identities=18%  Similarity=0.255  Sum_probs=96.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~f  203 (284)
                      .++.+.+|||.+.| +|+||+.-++   .|+ +|..|+.||..+++|.-|==.-++.+..|+++.||+.++..++  ..|
T Consensus       131 ~~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         131 KVKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             ccccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence            35679999999999 8999999877   888 9999999999999987664333434557899999999877655  469


Q ss_pred             cEEEecccc-cCChHH-HHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCc-----cC--CCcEEEEEecCC
Q 036061          204 DCIFLAALV-GMSKEE-KVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH-----DL--LDFELLSVFHPT  269 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~-k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~-----dl--~gfe~~~~~hP~  269 (284)
                      |+|+-+.-- ...-+- -.++.++++|.|+|||.+.=-.++.-+  .|--.|..     .|  .||+++....-.
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG~d~~~gVa~RLr~vGF~~v~~~~~~  279 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRGLDLPKGVAERLRRVGFEVVKKVREA  279 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--ccccCChhHHHHHHHHhcCceeeeeehhc
Confidence            999866421 000022 267899999999999998543333211  12222221     12  699987765543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.52  E-value=3.8e-06  Score=77.67  Aligned_cols=122  Identities=13%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      .+++.....|..  ...|-+|+||.||++-+-.=.+.+  .+.  .+|.-.|.||..++.+++++++.| +++-++|+++
T Consensus       121 ~~i~~ai~~L~~--~g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~  195 (311)
T PF12147_consen  121 ELIRQAIARLRE--QGRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQG  195 (311)
T ss_pred             HHHHHHHHHHHh--cCCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEec
Confidence            334444444422  257889999999997775555555  343  789999999999999999999999 7888899999


Q ss_pred             ccccccc--cCC-CccEEEecccccC--ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          192 DIMQVKE--KLG-EYDCIFLAALVGM--SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       192 D~~~~~~--~~~-~fD~V~~aa~v~~--~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.+...  .+. ..|+++++.+...  +.+.-.+.+..+.+.+.|||.+|+..
T Consensus       196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            9987422  222 4799998876522  32334567999999999999999966

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.50  E-value=5.6e-07  Score=80.19  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +++++|||||+ |+.++.||= ..|+.+||-+|...+.+..=+++.+.+|.  ++++++++.+.+.......||+|..=|
T Consensus        68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHhhcccccccCcEEEeeh
Confidence            68999999996 899999884 57999999999999999999999999995  679999999988665432299998655


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .     ..-..+++-....+++||.++.
T Consensus       144 v-----a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         144 V-----ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             c-----cchHHHHHHHHHhcccCCcchh
Confidence            5     3445688888999999887654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.5e-07  Score=78.65  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      .+.-.+++++++|||+ |+-++..+  .+..-.|.|+||||+|++.+++++..+-.   ++.+.++|+.+.....+.||.
T Consensus        44 ygdiEgkkl~DLgcgc-GmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDt  117 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGC-GMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDT  117 (185)
T ss_pred             hccccCcchhhhcCch-hhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEee
Confidence            3557889999999996 55444333  35556799999999999999999999774   789999999987776677999


Q ss_pred             EEecccc
Q 036061          206 IFLAALV  212 (284)
Q Consensus       206 V~~aa~v  212 (284)
                      ++.+.-.
T Consensus       118 aviNppF  124 (185)
T KOG3420|consen  118 AVINPPF  124 (185)
T ss_pred             EEecCCC
Confidence            8877643

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.49  E-value=6.7e-07  Score=79.61  Aligned_cols=101  Identities=15%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-cccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-QVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-~~~~~~~~fD~V~  207 (284)
                      ..+.-|||||||+ |+++-.|..   .|...+|+||||.|++.|.+.- -.|      .++.+|.- -+++..+.||-|+
T Consensus        49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e-~eg------dlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVERE-LEG------DLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHhh-hhc------CeeeeecCCCCCCCCCccceEE
Confidence            3578999999997 899988876   8999999999999999999711 113      34455543 3555667899887


Q ss_pred             ecccc--cC--------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV--GM--------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v--~~--------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-+.|  .+        +..--..++..++..|++|++-++-.
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            43322  11        11222567888999999999998865

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.48  E-value=6.8e-07  Score=82.19  Aligned_cols=76  Identities=13%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+|.+| ..+++   .+.+|+++|+|+++++.+++.+..     .+++++++|+.++..+.-.+|
T Consensus        37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         37 AAGPQPGDNVLEIGPGLGALT-EPLLE---RAAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             hcCCCCcCeEEEeCCCccHHH-HHHHH---hCCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcc
Confidence            335578899999999986555 55666   245999999999999999986532     489999999987654211146


Q ss_pred             EEEec
Q 036061          205 CIFLA  209 (284)
Q Consensus       205 ~V~~a  209 (284)
                      .|+.+
T Consensus       108 ~vv~N  112 (272)
T PRK00274        108 KVVAN  112 (272)
T ss_pred             eEEEe
Confidence            76654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.48  E-value=2.1e-06  Score=74.85  Aligned_cols=110  Identities=15%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---CccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~fD~  205 (284)
                      -.+.++||+=+|.+.+..-.+.+   ...+++.||.|.++....+++++.+| +..+++++..|+...+...+   .||+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHHHhcCCCCcccE
Confidence            56899999866666666666666   56789999999999999999999999 78899999999986543332   3999


Q ss_pred             EEecccccCChHHHHHHHHH--HHhhcCCCcEEEEEecC
Q 036061          206 IFLAALVGMSKEEKVKIIKH--IRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~--l~~~l~pGg~lv~r~~~  242 (284)
                      ||++.--+...-++...+..  -...|+|||.+++....
T Consensus       118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            99997543333444444444  45669999999999854

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.48  E-value=3.9e-07  Score=87.20  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHH
Q 036061           67 VQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTS  146 (284)
Q Consensus        67 ~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~ta  146 (284)
                      ...+.+.+-++++..+...|..|...++.++. +      .+-.+.....+.|--...+.+..++.+++++||| +|-.+
T Consensus        54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~------e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~  125 (364)
T KOG1269|consen   54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-P------EGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS  125 (364)
T ss_pred             ccccchHHHHHhcccchhhhhhhccchhccCc-c------chhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence            33556778888888899999999999988766 2      2223333333333333334566788899999999 45566


Q ss_pred             HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHH
Q 036061          147 IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHI  226 (284)
Q Consensus       147 i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l  226 (284)
                      ..++.  +.++.++|+|.++.-+.++.......+ +.++-.|+.+|....+.+...||.|.+.-. +...+....+++++
T Consensus       126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~~~~~~~~~~y~Ei  201 (364)
T KOG1269|consen  126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV-VCHAPDLEKVYAEI  201 (364)
T ss_pred             HHHHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee-cccCCcHHHHHHHH
Confidence            77776  688999999999999999999999888 788888899999988888889999974322 23447788899999


Q ss_pred             HhhcCCCcEEEEEe
Q 036061          227 RKYMKDGGVLLVRS  240 (284)
Q Consensus       227 ~~~l~pGg~lv~r~  240 (284)
                      +|+++|||+++.-.
T Consensus       202 ~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  202 YRVLKPGGLFIVKE  215 (364)
T ss_pred             hcccCCCceEEeHH
Confidence            99999999999854

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.44  E-value=3.4e-06  Score=77.62  Aligned_cols=115  Identities=19%  Similarity=0.322  Sum_probs=85.4

Q ss_pred             CCCEEEEeccCCC--hhHHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHH-------------------hcCC--
Q 036061          130 NPKKVAFVGSGPM--PLTSIVMAKNHLK-----STHFDNFDIDEAANDVARQIVS-------------------SDIE--  181 (284)
Q Consensus       130 ~~~~VL~IGsG~l--p~tai~LA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~-------------------~~G~--  181 (284)
                      .+-||.-+||+++  |+|..++...+.+     ..+|++.|||..+++.|++-+=                   +.+.  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            5789999999854  5664444443443     6899999999999999975321                   1110  


Q ss_pred             ------CCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          182 ------FEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       182 ------l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                            +.+.|+|...|+.+-....+.||+||+=. ++-++.+.+.++++.++..|+|||.|++-....+
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~  245 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI  245 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence                  12568888888876443456799999654 4477889999999999999999999999775544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.41  E-value=3.2e-06  Score=79.96  Aligned_cols=108  Identities=18%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~fD~V  206 (284)
                      ..+|..|||==||++|+  ++=|  -+.|++++|.|+|..|++-|+.|++..|.  ....+..+ |+++++.+...+|.|
T Consensus       195 v~~G~~vlDPFcGTGgi--LiEa--gl~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vdaI  268 (347)
T COG1041         195 VKRGELVLDPFCGTGGI--LIEA--GLMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDAI  268 (347)
T ss_pred             cccCCEeecCcCCccHH--HHhh--hhcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccceE
Confidence            57888999999998754  2223  36899999999999999999999999994  45666666 999988544459999


Q ss_pred             EecccccCC--------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMS--------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~--------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..+..-|-.        .+-..++++...++|++||++++-..
T Consensus       269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            887633221        24478999999999999999998875

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.35  E-value=4.2e-06  Score=77.56  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCC-Ccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLG-EYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~-~fD  204 (284)
                      .+.++.+|||..+||+|=|+. +|..+...+.|++.|+++..+..-+++++++|.  ..+...+.|.+.... ... .||
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~-la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd  158 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTH-LAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFD  158 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHH-HHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred             cccccccccccccCCCCceee-eeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccc
Confidence            568889999999999988864 555455578999999999999999999999995  678888899887632 223 599


Q ss_pred             EEEecccc------cCChHH---------------HHHHHHHHHhhc----CCCcEEEEEe
Q 036061          205 CIFLAALV------GMSKEE---------------KVKIIKHIRKYM----KDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v------~~~~~~---------------k~~il~~l~~~l----~pGg~lv~r~  240 (284)
                      .|++++--      .-+++-               ..++|++.++.+    +|||++++.+
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            99988721      112222               278999999999    9999999977

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.34  E-value=1.1e-06  Score=79.18  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=72.7

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      +.++|||||++ .+++.+|. ++  -+|+++|+|++|++.|++.....- .....++...+..++.......|+|..+-.
T Consensus        35 ~~a~DvG~G~G-qa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   35 RLAWDVGTGNG-QAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             ceEEEeccCCC-cchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhh
Confidence            38999999984 99999998 33  579999999999999988432211 122334444444444433457999987766


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCc-EEEEEec
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGG-VLLVRSA  241 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg-~lv~r~~  241 (284)
                      ++|  =+-.++++.+.|.||+.| ++++-.+
T Consensus       110 ~HW--Fdle~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  110 VHW--FDLERFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             HHh--hchHHHHHHHHHHcCCCCCEEEEEEc
Confidence            666  345678999999999887 7666543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.34  E-value=4.1e-06  Score=78.26  Aligned_cols=110  Identities=18%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEecccccc------c
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVK------E  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~------~  198 (284)
                      ++++.++++|||-+|. .+-+-+  ..-..++|+||.+..++.|++..+..-...+    .+.|++||-....      +
T Consensus       116 ~~~~~~~~LgCGKGGD-LlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGD-LLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             ccccccceeccCCccc-HhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            7889999999998665 444434  1335799999999999999998875432222    4789999976421      1


Q ss_pred             cCCCccEEE---ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIF---LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~---~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +..+||+|=   ...+...+.+.-...+.++.+.|+|||+++-..+
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            222499983   2233222444555678999999999999998553

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.32  E-value=2.2e-06  Score=77.17  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEeccc-----cccccCCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM-KFVTCDIM-----QVKEKLGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I-~f~~~D~~-----~~~~~~~~  202 (284)
                      .++++|||+||||+++| .++++  ....+|+++|+++.++....+   ..    .++ .+...|+.     +...++..
T Consensus        74 ~~~~~vlDiG~gtG~~t-~~l~~--~ga~~v~avD~~~~~l~~~l~---~~----~~v~~~~~~ni~~~~~~~~~~d~~~  143 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFT-DCALQ--KGAKEVYGVDVGYNQLAEKLR---QD----ERVKVLERTNIRYVTPADIFPDFAT  143 (228)
T ss_pred             CCCCEEEEcccCCCHHH-HHHHH--cCCCEEEEEeCCHHHHHHHHh---cC----CCeeEeecCCcccCCHhHcCCCcee
Confidence            47789999999998776 45666  234589999999988776222   11    122 23333333     23334456


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ||++|.+..         .++..+.+.|+| |.+++
T Consensus       144 ~DvsfiS~~---------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       144 FDVSFISLI---------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeEEEeehH---------hHHHHHHHHhCc-CeEEE
Confidence            888886532         268899999999 66554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.3e-05  Score=69.58  Aligned_cols=107  Identities=17%  Similarity=0.249  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.-+++||||. |.-+-.|++...+++...+.||+|.|.+..++-++..+.   ++..+++|..+.... ++.|++++
T Consensus        42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhhcc-CCccEEEE
Confidence            3488999999997 566666777677889999999999999999999998884   688999998876655 68998877


Q ss_pred             cc-cccCChHH-------------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AA-LVGMSKEE-------------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa-~v~~~~~~-------------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +. +|.-+.++                   -.+++.++-..|.|.|++.+-.
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~  168 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA  168 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence            65 45222222                   1456777778888999877654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.28  E-value=5.1e-06  Score=73.62  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=77.8

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccccc
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVG  213 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~  213 (284)
                      |+||||-. |+-++.|.+ ...-.++++.|+++.-++.|++.+++.| +.++|+++.||+.+...+-...|.|+++.+  
T Consensus         1 vaDIGtDH-gyLpi~L~~-~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM--   75 (205)
T PF04816_consen    1 VADIGTDH-GYLPIYLLK-NGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM--   75 (205)
T ss_dssp             EEEET-ST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred             Cceeccch-hHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecC--
Confidence            68999998 677788887 2444579999999999999999999999 899999999999876554334899987743  


Q ss_pred             CChHHHHHHHHHHHhhcCCCcEEEEEec---CccccccCc
Q 036061          214 MSKEEKVKIIKHIRKYMKDGGVLLVRSA---KGARAFLYP  250 (284)
Q Consensus       214 ~~~~~k~~il~~l~~~l~pGg~lv~r~~---~glr~~lYp  250 (284)
                       --.--.++++.....++....|++---   .-+|.+|+-
T Consensus        76 -GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~  114 (205)
T PF04816_consen   76 -GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE  114 (205)
T ss_dssp             --HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred             -CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence             235567888888888777667777542   335666543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.27  E-value=6.1e-06  Score=79.40  Aligned_cols=101  Identities=16%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~  208 (284)
                      +-+|||..||++.. ++.++++ .+| .+|+++|+|++|++.++++++..+.  .++++.++|+..+.... ..||+|++
T Consensus        45 ~~~vLD~faGsG~r-gir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        45 YINIADALSASGIR-AIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNSV--ENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CCEEEECCCchhHH-HHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            35899999997555 5556652 234 5899999999999999999998883  47899999998776543 36999999


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+ |.    ...+++.+.+.+++||.|.+..
T Consensus       121 DPf-Gs----~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       121 DPF-GT----PAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCC-CC----cHHHHHHHHHhcccCCEEEEEe
Confidence            985 32    2468899999999999998874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.25  E-value=8.9e-06  Score=69.66  Aligned_cols=111  Identities=11%  Similarity=0.166  Sum_probs=87.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--  200 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--  200 (284)
                      ........+.-||++|-|++.+|-..|++ ..+...++.|+.|++-+..-.+   ..    ..++++.||+.++...+  
T Consensus        41 ~s~I~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~---~~----p~~~ii~gda~~l~~~l~e  112 (194)
T COG3963          41 ASVIDPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQ---LY----PGVNIINGDAFDLRTTLGE  112 (194)
T ss_pred             HhccCcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHH---hC----CCccccccchhhHHHHHhh
Confidence            34456688899999999999999988887 5677899999999998776665   33    35679999998765322  


Q ss_pred             ---CCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 ---GEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ---~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         ..||.|+.+-- ...+...+.++++.+..++.+||.++.=++
T Consensus       113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence               24999996643 355678889999999999999999887653

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.25  E-value=1.7e-05  Score=73.21  Aligned_cols=108  Identities=12%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .-.|++|||+|||| | |+++-+....+ -.+++++|.|+.|++.|+.+++.... ....... .+...-..+....|+|
T Consensus        31 ~f~P~~vLD~GsGp-G-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLv  106 (274)
T PF09243_consen   31 DFRPRSVLDFGSGP-G-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLV  106 (274)
T ss_pred             CCCCceEEEecCCh-H-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEE
Confidence            35789999999997 3 56665553333 35699999999999999999987652 2222121 1111111223345999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..+ .++.+.+.++++.+++.+++ -.+++..
T Consensus       107 i~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEp  140 (274)
T PF09243_consen  107 IASYVLNELPSAARAELVRSLWNKTAP-VLVLVEP  140 (274)
T ss_pred             EEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcC
Confidence            877644 55558899999999999877 4555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.24  E-value=6e-06  Score=74.90  Aligned_cols=153  Identities=12%  Similarity=0.067  Sum_probs=95.8

Q ss_pred             CchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhh--HHHHHHhcCCCCcccccccCCCcchhhh
Q 036061           37 PSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLE--LEFATFFAKTPQPLNNLNLFPYYGNYVK  114 (284)
Q Consensus        37 p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE--~~~a~~l~~~~~p~~~L~~fpy~~ny~~  114 (284)
                      +.+.++....+|-..|---.+     -.+..+.+..++++  +.+.+--|  +.|.+.+.+...+..     .+++++..
T Consensus        27 ~k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST~-----ERl~~Ld~   94 (251)
T PF07091_consen   27 LKEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHASTR-----ERLPNLDE   94 (251)
T ss_dssp             HHHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHHH-----CCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccchh-----hhhhhHHH
Confidence            345588888888888765321     12345555566666  22222222  233344554433322     45566666


Q ss_pred             hhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061          115 LANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM  194 (284)
Q Consensus       115 l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~  194 (284)
                      +...+++     ...++.+|+|||||.-|++..++..  .+++.++|+|||..+++.-.+.+..+|.   +.++...|..
T Consensus        95 fY~~if~-----~~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~  164 (251)
T PF07091_consen   95 FYDEIFG-----RIPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLL  164 (251)
T ss_dssp             HHHHHCC-----CS---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred             HHHHHHh-----cCCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeee
Confidence            6666543     2366999999999999999988865  6789999999999999999999999985   6788888886


Q ss_pred             cccccCCCccEEEecccc
Q 036061          195 QVKEKLGEYDCIFLAALV  212 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v  212 (284)
                      .-+. -...|+.++-=++
T Consensus       165 ~~~~-~~~~DlaLllK~l  181 (251)
T PF07091_consen  165 SDPP-KEPADLALLLKTL  181 (251)
T ss_dssp             TSHT-TSEESEEEEET-H
T ss_pred             ccCC-CCCcchhhHHHHH
Confidence            4322 2358988765544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.23  E-value=1.1e-05  Score=76.54  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      |..-+.+. ...|.+|+|.=+|-+|+ |+.+|+   .|.. |+++|++|+|++..+++++..+ ++++|+.++||+.++.
T Consensus       178 ER~Rva~~-v~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~  251 (341)
T COG2520         178 ERARVAEL-VKEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVA  251 (341)
T ss_pred             HHHHHHhh-hcCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhh
Confidence            54444332 35699999998885555 467787   4444 9999999999999999999999 7888999999999998


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+.||.|++...     ..-.+++....+.+++||++-+..
T Consensus       252 ~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         252 PELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             hccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence            87788999997644     233467888888999999987755

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2e-05  Score=77.11  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---Cc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~f  203 (284)
                      ...++.+|+|+=||- |.-++.||+   ...+|+|+|+++++++.|+++++..| +. +++|+.+|+.++...+.   .|
T Consensus       290 ~~~~~~~vlDlYCGv-G~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~-i~-N~~f~~~~ae~~~~~~~~~~~~  363 (432)
T COG2265         290 ELAGGERVLDLYCGV-GTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANG-ID-NVEFIAGDAEEFTPAWWEGYKP  363 (432)
T ss_pred             hhcCCCEEEEeccCC-Chhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEeCCHHHHhhhccccCCC
Confidence            446778999999994 666788987   78999999999999999999999999 44 49999999999887663   68


Q ss_pred             cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEE
Q 036061          204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~l  236 (284)
                      |.|+++.-= |++    .++++.+.+. +|-.++
T Consensus       364 d~VvvDPPR~G~~----~~~lk~l~~~-~p~~Iv  392 (432)
T COG2265         364 DVVVVDPPRAGAD----REVLKQLAKL-KPKRIV  392 (432)
T ss_pred             CEEEECCCCCCCC----HHHHHHHHhc-CCCcEE
Confidence            999999642 443    3466777765 555443

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.21  E-value=6.5e-06  Score=78.81  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             HHHHhcCCCCCCEEEEe--ccCCChhHHHHHHhhcCCC----------------------------c-------EEEEEe
Q 036061          121 RILDENGVVNPKKVAFV--GSGPMPLTSIVMAKNHLKS----------------------------T-------HFDNFD  163 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~I--GsG~lp~tai~LA~~~~~g----------------------------~-------~V~~iD  163 (284)
                      .++...+-.++..++|-  ||||++.-|.+++...-||                            +       .+.|.|
T Consensus       182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D  261 (381)
T COG0116         182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD  261 (381)
T ss_pred             HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence            33444455666778775  5557777677776422221                            1       377999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh------H-HHHHHHHHHHhhcCCCcEE
Q 036061          164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK------E-EKVKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~------~-~k~~il~~l~~~l~pGg~l  236 (284)
                      +|+.+++.|+.|+++.| +++.|+|.++|+.++..+...+|+|+.+.--|.-.      + -+..+.+.+.+.++--++.
T Consensus       262 id~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~  340 (381)
T COG0116         262 IDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY  340 (381)
T ss_pred             CCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence            99999999999999999 79999999999999888767899999886432211      1 3345555666777777788


Q ss_pred             EEEec
Q 036061          237 LVRSA  241 (284)
Q Consensus       237 v~r~~  241 (284)
                      ++-+.
T Consensus       341 v~tt~  345 (381)
T COG0116         341 VFTTS  345 (381)
T ss_pred             EEEcc
Confidence            87663

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=1.7e-05  Score=72.56  Aligned_cols=104  Identities=19%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD  204 (284)
                      ...++.+|++-|+|.+++| ..+|+...|.+++..+|..+...+.|++-++..| +.+.+++.+-|+-..-+..  ..+|
T Consensus       102 ~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ks~~aD  179 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLIKSLKAD  179 (314)
T ss_pred             cCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccccccccc
Confidence            4689999999999987775 5678867889999999999999999999999999 7999999999987655444  3599


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .||++-.      .....+.+.++.+|.+|.-++
T Consensus       180 aVFLDlP------aPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  180 AVFLDLP------APWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             eEEEcCC------ChhhhhhhhHHHhhhcCceEE
Confidence            9998743      345677888889998885444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.18  E-value=2.3e-05  Score=81.22  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccccC---ChHHHHHHHHHHHhhc-
Q 036061          157 THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGM---SKEEKVKIIKHIRKYM-  230 (284)
Q Consensus       157 ~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~---~~~~k~~il~~l~~~l-  230 (284)
                      .+++|+|+|++|++.|++++...| +.++|+|.++|+.++....  +.||+|+.+.--|.   ..++-.++...+.+.+ 
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            379999999999999999999999 7889999999998875543  36999998863222   1223233444444444 


Q ss_pred             --CCCcEEEEEec
Q 036061          231 --KDGGVLLVRSA  241 (284)
Q Consensus       231 --~pGg~lv~r~~  241 (284)
                        .+|+.+.+-++
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence              48988777664

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.18  E-value=1.2e-05  Score=80.29  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V  206 (284)
                      ....-+||||||- |-..+.+|+ ..|+..+.|||+....+..|.+.+.+.|.  .++.++++|+..+...+  +++|-|
T Consensus       346 ~~~p~~lEIG~G~-G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGM-GEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCc-hHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEE
Confidence            4567999999996 556677887 68999999999999999999999988884  68999999875443322  469999


Q ss_pred             EecccccCChHH--H-----HHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEE--K-----VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~--k-----~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++..--.|++.-  |     ..+++.+++.|+|||.+-+++-
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            877554564422  2     6788999999999999999884

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.18  E-value=2e-05  Score=73.78  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----C
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----L  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----~  200 (284)
                      +.+.++..++|-=+|.+|-|..++.+  .++++|+|+|+|++|++.|++.++..+   .++++++++..++...     +
T Consensus        16 L~~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~   90 (305)
T TIGR00006        16 LNIKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLV   90 (305)
T ss_pred             cCcCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCC
Confidence            34577789999999987877766644  446999999999999999999887654   5999999998876432     2


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      ..+|.|+++-.|
T Consensus        91 ~~vDgIl~DLGv  102 (305)
T TIGR00006        91 TKIDGILVDLGV  102 (305)
T ss_pred             CcccEEEEeccC
Confidence            458999877655

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.16  E-value=1e-05  Score=76.30  Aligned_cols=103  Identities=20%  Similarity=0.287  Sum_probs=76.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -+++.|||||||+ |.=++.-|+ + ...+|.++|-|.-+ +.|++++...| +++.|+++.|.+.++.-+....|+++.
T Consensus        59 f~dK~VlDVGcGt-GILS~F~ak-A-GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   59 FKDKTVLDVGCGT-GILSMFAAK-A-GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             cCCCEEEEcCCCc-cHHHHHHHH-h-CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEee
Confidence            5789999999997 666777777 2 34679999999666 99999999999 899999999999987555568999863


Q ss_pred             cc---cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          209 AA---LVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       209 aa---~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      .=   .+. ....-..++-.=-+.|+|||.+.
T Consensus       134 EWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGYFLL-YESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence            31   110 01122334444457899999864

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.14  E-value=1.2e-05  Score=71.32  Aligned_cols=112  Identities=14%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHH-------hcCCCCCCeEEEEecc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVS-------SDIEFEKRMKFVTCDI  193 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~-------~~G~l~~~I~f~~~D~  193 (284)
                      .+...++.+....+|||||- |-..+..|-  ..+++ +.||++.+...+.|++..+       ..|.-..++++..||.
T Consensus        34 il~~~~l~~~dvF~DlGSG~-G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSGV-GNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHTT--TT-EEEEES-TT-SHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHhCCCCCCEEEECCCCC-CHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            34455678899999999994 555444443  46776 9999999999999986553       3443246889999998


Q ss_pred             ccccc---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          194 MQVKE---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       194 ~~~~~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .+...   .+.+-|+||++..+ .+.+-. .-+......||+|.++|.
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn~~-F~~~l~-~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNNTC-FDPDLN-LALAELLLELKPGARIIS  156 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--TT-T-HHHH-HHHHHHHTTS-TT-EEEE
T ss_pred             cccHhHhhhhcCCCEEEEeccc-cCHHHH-HHHHHHHhcCCCCCEEEE
Confidence            75331   23567999998775 333444 445777788999999875

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.14  E-value=9.7e-06  Score=77.35  Aligned_cols=81  Identities=21%  Similarity=0.230  Sum_probs=56.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---------  199 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---------  199 (284)
                      ..+.+|+|+=||. |.-++.||+   ...+|+|||++++|++.|+++++..|.  ++++|+++++.++...         
T Consensus       195 ~~~~~vlDlycG~-G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~~~~~~~~r~~~~  268 (352)
T PF05958_consen  195 LSKGDVLDLYCGV-GTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDFAKALAKAREFNR  268 (352)
T ss_dssp             T-TTEEEEES-TT-TCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred             cCCCcEEEEeecC-CHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccchhHHHHhhHHHHh
Confidence            3344899999995 566788998   778999999999999999999999995  6899999988765321         


Q ss_pred             -----C--CCccEEEecccc-cCC
Q 036061          200 -----L--GEYDCIFLAALV-GMS  215 (284)
Q Consensus       200 -----~--~~fD~V~~aa~v-~~~  215 (284)
                           +  ..+|+|+++.-= |++
T Consensus       269 ~~~~~~~~~~~d~vilDPPR~G~~  292 (352)
T PF05958_consen  269 LKGIDLKSFKFDAVILDPPRAGLD  292 (352)
T ss_dssp             GGGS-GGCTTESEEEE---TT-SC
T ss_pred             hhhhhhhhcCCCEEEEcCCCCCch
Confidence                 1  157999998643 544

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.13  E-value=2.5e-05  Score=71.46  Aligned_cols=150  Identities=19%  Similarity=0.335  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------------------------
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-------------------------  181 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-------------------------  181 (284)
                      +..++.++|||||||.-+.++..++   .=-.|+..|..+...+.-++=++..|.                         
T Consensus        53 g~~~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~  129 (256)
T PF01234_consen   53 GGVKGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE  129 (256)
T ss_dssp             SSS-EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence            4467889999999997776655544   224699999998888755444433221                         


Q ss_pred             -CCCCeE-EEEecccccccc-----CC-CccEEEeccc---ccCChHHHHHHHHHHHhhcCCCcEEEEEecC-------c
Q 036061          182 -FEKRMK-FVTCDIMQVKEK-----LG-EYDCIFLAAL---VGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK-------G  243 (284)
Q Consensus       182 -l~~~I~-f~~~D~~~~~~~-----~~-~fD~V~~aa~---v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~-------g  243 (284)
                       +...|+ ++.+|++....-     +. +||+|+....   +.-+.+++.+.++++.++|||||.|++-..-       |
T Consensus       130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence             012344 777888763321     22 3999975542   2447789999999999999999999997632       2


Q ss_pred             cccccCccCC--Ccc----C--CCcEEEEEecCCc-ceeee--EEEEee
Q 036061          244 ARAFLYPVVE--KHD----L--LDFELLSVFHPTN-EVINS--VVLVRK  281 (284)
Q Consensus       244 lr~~lYp~v~--~~d----l--~gfe~~~~~hP~~-~v~ns--vi~~r~  281 (284)
                      -+.  ||.+.  .+.    +  .||++....++.. .-+++  +++|||
T Consensus       210 ~~~--F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  210 GHK--FPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             TEE--EE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred             CEe--cccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence            222  33333  222    2  6999988876222 12333  455666

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.13  E-value=1.9e-06  Score=76.57  Aligned_cols=106  Identities=22%  Similarity=0.298  Sum_probs=79.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC----CccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG----EYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~----~fD~  205 (284)
                      ....|++.=||.+| .++..|.   .++.|.+|||||.-+..|+.+++-.| ..+||+|++||..++-..+.    .+|+
T Consensus        94 ~~~~iidaf~g~gG-ntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGG-NTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCc-hHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence            56788888888544 5577776   78999999999999999999999999 68899999999988655441    2678


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||.+..-|.+.--+..+ -.+..++.|.|.-++|..
T Consensus       169 vf~sppwggp~y~~~~~-~DL~~~~~p~~~~~fk~s  203 (263)
T KOG2730|consen  169 VFLSPPWGGPSYLRADV-YDLETHLKPMGTKIFKSS  203 (263)
T ss_pred             eecCCCCCCcchhhhhh-hhhhhhcchhHHHHHHhh
Confidence            88776544333333333 467777777776666553

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.12  E-value=1.4e-05  Score=79.72  Aligned_cols=102  Identities=25%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-----------cc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-----------QV  196 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-----------~~  196 (284)
                      ..++.+|+.+|+|+.|+.++..|+  ..|+.|+++|++++..+.+++    +|.     +|..-|..           +.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak--~lGA~V~a~D~~~~rle~aes----lGA-----~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAG--SLGAIVRAFDTRPEVAEQVES----MGA-----EFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEEeccccccccccchhhhc
Confidence            468999999999999999999998  578899999999999888887    352     22211110           11


Q ss_pred             cc------------cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          197 KE------------KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       197 ~~------------~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..            ..+++|+||.++.+...+.+ .-+.++..+.|||||+++.-..
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP-~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP-KLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc-chHHHHHHHhcCCCCEEEEEcc
Confidence            11            12469999988876211112 2345999999999999887664

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.12  E-value=0.00016  Score=68.31  Aligned_cols=166  Identities=14%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHhcC------CCCCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061          115 LANLEYRILDENG------VVNPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM  186 (284)
Q Consensus       115 l~~~E~~~l~~~~------~~~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I  186 (284)
                      +.+.|.++|.++.      ..++..++++|||.+-=|.+.|....  ....+.+++|||.++++.|.+.+.... . ..+
T Consensus        55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l  132 (319)
T TIGR03439        55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV  132 (319)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence            5567777776653      35677999999998666777665421  235789999999999999999887222 1 245


Q ss_pred             EE--EEeccccccc---c--C-CCccEEEe-cccc-cCChHHHHHHHHHHHh-hcCCCcEEEEEe---------------
Q 036061          187 KF--VTCDIMQVKE---K--L-GEYDCIFL-AALV-GMSKEEKVKIIKHIRK-YMKDGGVLLVRS---------------  240 (284)
Q Consensus       187 ~f--~~~D~~~~~~---~--~-~~fD~V~~-aa~v-~~~~~~k~~il~~l~~-~l~pGg~lv~r~---------------  240 (284)
                      ++  ++||-.+...   .  . ....++++ -+.+ .+++++...+|+.+++ .|+||+.|++--               
T Consensus       133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d  212 (319)
T TIGR03439       133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND  212 (319)
T ss_pred             EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence            55  8888765322   1  1 23566654 3456 4578889999999999 999999998832               


Q ss_pred             cCcc-ccccCc-------cCCC--ccCCCcEEEEEecCCcceeeeEEEEeec
Q 036061          241 AKGA-RAFLYP-------VVEK--HDLLDFELLSVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       241 ~~gl-r~~lYp-------~v~~--~dl~gfe~~~~~hP~~~v~nsvi~~r~~  282 (284)
                      ..|. +.|+--       ...-  -++..|+-...++|...-+..-+++++.
T Consensus       213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~  264 (319)
T TIGR03439       213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD  264 (319)
T ss_pred             CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence            1121 111100       0111  1345688899999988878887777653

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.07  E-value=3.9e-05  Score=72.27  Aligned_cols=111  Identities=22%  Similarity=0.311  Sum_probs=80.5

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      ..+..+..-.++-|+|||||. |+-+..-|+  -...+|.+++-| +|.+.|+++++... +.+||+++.|-+.++..+ 
T Consensus       168 Ail~N~sDF~~kiVlDVGaGS-GILS~FAaq--AGA~~vYAvEAS-~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLP-  241 (517)
T KOG1500|consen  168 AILENHSDFQDKIVLDVGAGS-GILSFFAAQ--AGAKKVYAVEAS-EMAQYARKLVASNN-LADRITVIPGKIEDIELP-  241 (517)
T ss_pred             HHHhcccccCCcEEEEecCCc-cHHHHHHHH--hCcceEEEEehh-HHHHHHHHHHhcCC-ccceEEEccCccccccCc-
Confidence            333333446789999999996 676676666  234579999998 78899999999887 899999999999886543 


Q ss_pred             CCccEEEecccccCC-hHHHHHHHHHHHhhcCCCcEEE
Q 036061          201 GEYDCIFLAALVGMS-KEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~-~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      .+.|+++....=-|- .+.-.+-.-+.++.|+|.|...
T Consensus       242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            478999866531111 1333344456779999999754

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.03  E-value=2.2e-05  Score=69.93  Aligned_cols=106  Identities=18%  Similarity=0.269  Sum_probs=75.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ...++||.|+|-+-.|--.|.+   .=-+|..+|..+.-++.|++.+...+  ..-.++.+.-+.++.+..+.||+||+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~---~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP---VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC---C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHH---hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence            4579999999966666555554   23689999999999999998765522  234678888888887766789999976


Q ss_pred             ccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      =.+ +++.++-.++|+.+...|+|||++++..
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            433 6788999999999999999999999976

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.99  E-value=0.00018  Score=55.25  Aligned_cols=102  Identities=17%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc--ccccC-CCccEEEecc
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ--VKEKL-GEYDCIFLAA  210 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~--~~~~~-~~fD~V~~aa  210 (284)
                      ++++|||++..+  .+++....+..++++|+++.+++.++......+ . ..+.+..+|...  .+... ..||++....
T Consensus        52 ~ld~~~g~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA--LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH--HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            999999975433  444411223589999999999999666554422 1 117888899775  33333 2699994333


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..... . ....+..+.+.++|||.+++...
T Consensus       128 ~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLL-P-PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcC-C-HHHHHHHHHHhcCCCcEEEEEec
Confidence            32221 1 67899999999999999988774

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.99  E-value=3e-05  Score=72.34  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             CCcccccccC-CCcchhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061           97 PQPLNNLNLF-PYYGNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR  173 (284)
Q Consensus        97 ~~p~~~L~~f-py~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar  173 (284)
                      +-|-.+|.+- |.--||+.-+..-+.   ...  ....-++||||+|+-.+=.++-++  ..|++++|.|||+.+++.|+
T Consensus        69 diP~~~LcP~iP~R~nYi~~i~DlL~---~~~~~~~~~v~glDIGTGAscIYpLLg~~--~~~W~fvaTdID~~sl~~A~  143 (299)
T PF05971_consen   69 DIPEGRLCPPIPNRLNYIHWIADLLA---SSNPGIPEKVRGLDIGTGASCIYPLLGAK--LYGWSFVATDIDPKSLESAR  143 (299)
T ss_dssp             ---TTS----HHHHHHHHHHHHHHHT-----TCGCS---EEEEES-TTTTHHHHHHHH--HH--EEEEEES-HHHHHHHH
T ss_pred             cCCCCCcCCCCchhHHHHHHHHHHhh---ccccccccceEeecCCccHHHHHHHHhhh--hcCCeEEEecCCHHHHHHHH
Confidence            4555555432 555678776654222   211  123569999999986666666666  46999999999999999999


Q ss_pred             HHHHhc-CCCCCCeEEEEeccc-cccc----cCCCccEEEecc
Q 036061          174 QIVSSD-IEFEKRMKFVTCDIM-QVKE----KLGEYDCIFLAA  210 (284)
Q Consensus       174 ~~~~~~-G~l~~~I~f~~~D~~-~~~~----~~~~fD~V~~aa  210 (284)
                      +++++. + |+++|+++...-. .+..    ....||+.+.+.
T Consensus       144 ~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNP  185 (299)
T PF05971_consen  144 ENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFTMCNP  185 (299)
T ss_dssp             HHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred             HHHHhccc-cccceEEEEcCCccccchhhhcccceeeEEecCC
Confidence            999999 7 8999999866422 2211    113599988765

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.98  E-value=2.3e-05  Score=67.19  Aligned_cols=121  Identities=17%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------c----
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------K----  199 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~----  199 (284)
                      .+.+|+|+||+|+|.|...+.+ ..+.++|+++|+.+.           ..  -..+.++++|.++...      .    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhcccc
Confidence            5699999999999999876644 225799999999987           12  2567787888765311      1    


Q ss_pred             CCCccEEEeccc--c-cC---C----hHHHHHHHHHHHhhcCCCcEEEEEecCccc--cccCccCCCccC-CCcEEEEEe
Q 036061          200 LGEYDCIFLAAL--V-GM---S----KEEKVKIIKHIRKYMKDGGVLLVRSAKGAR--AFLYPVVEKHDL-LDFELLSVF  266 (284)
Q Consensus       200 ~~~fD~V~~aa~--v-~~---~----~~~k~~il~~l~~~l~pGg~lv~r~~~glr--~~lYp~v~~~dl-~gfe~~~~~  266 (284)
                      .+.||+|+.+..  + +.   +    ..--...+.-..+.|+|||.+++...++..  .+++      .+ ..|+.+.++
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~------~l~~~F~~v~~~  162 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIY------LLKRCFSKVKIV  162 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHH------HHHHHHHHEEEE
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHH------HHHhCCeEEEEE
Confidence            147999997762  1 11   0    011244455556789999999987755311  1111      11 357777777


Q ss_pred             cCCc
Q 036061          267 HPTN  270 (284)
Q Consensus       267 hP~~  270 (284)
                      .|..
T Consensus       163 Kp~~  166 (181)
T PF01728_consen  163 KPPS  166 (181)
T ss_dssp             E-TT
T ss_pred             ECcC
Confidence            6644

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.97  E-value=3.2e-05  Score=64.55  Aligned_cols=85  Identities=20%  Similarity=0.316  Sum_probs=63.6

Q ss_pred             EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC--CccEEEecc-cc-cCC------hHHHHHHHHHHH
Q 036061          158 HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG--EYDCIFLAA-LV-GMS------KEEKVKIIKHIR  227 (284)
Q Consensus       158 ~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~--~fD~V~~aa-~v-~~~------~~~k~~il~~l~  227 (284)
                      +|.++||-++|++.+++.+++.| +.++++++.....++.....  ..|+|+++- +. |.+      .+--...++...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            58999999999999999999999 78899999999988776544  599998764 23 322      133478899999


Q ss_pred             hhcCCCcEEEEEecCc
Q 036061          228 KYMKDGGVLLVRSAKG  243 (284)
Q Consensus       228 ~~l~pGg~lv~r~~~g  243 (284)
                      +.|+|||++++..+.|
T Consensus        80 ~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHEEEEEEEEEEE--S
T ss_pred             HhhccCCEEEEEEeCC
Confidence            9999999999887543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.97  E-value=3.2e-05  Score=70.96  Aligned_cols=108  Identities=17%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             CCCEEEEeccCCChh--HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------
Q 036061          130 NPKKVAFVGSGPMPL--TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~--tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------  198 (284)
                      .=.+.|||||| +|.  ..--.|+...|+++|+-+|.||-.+..||.++.....  .+..++.+|+.+...         
T Consensus        68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHh
Confidence            34799999999 452  3445666668999999999999999999999876541  358999999987321         


Q ss_pred             --cCCCccEEEecccc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 --KLGEYDCIFLAALV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 --~~~~fD~V~~aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ++.+-=.|++.+.+ .. +.++...++..+.+.|.||..|++..
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence              11211124444433 33 44677899999999999999999976

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.97  E-value=4.9e-05  Score=71.31  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      +.+....++++|+.+|+|++|+.++.+|+  ..|+ +|+++|.+++..+.|++    +|. ..-+.....|..+.....+
T Consensus       162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak--~~G~~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~g  234 (343)
T PRK09880        162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVK--TLGAAEIVCADVSPRSLSLARE----MGA-DKLVNPQNDDLDHYKAEKG  234 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEEeCCHHHHHHHHH----cCC-cEEecCCcccHHHHhccCC
Confidence            34445567899999999999999999999  4677 69999999999887765    452 1111111122222222223


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+||-+..-       ...++...+.|++||++++-.
T Consensus       235 ~~D~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        235 YFDVSFEVSGH-------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence            59999865431       135677888999999998764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.96  E-value=8.3e-05  Score=70.75  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=83.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHH--HHHHhcC---CCCCCeEEEEeccccccccCC-
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVAR--QIVSSDI---EFEKRMKFVTCDIMQVKEKLG-  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar--~~~~~~G---~l~~~I~f~~~D~~~~~~~~~-  201 (284)
                      +...+||.+|.|- |+.+.-+-|  +| -.+||-+|.||++++.|+  ...++..   ....|++++..|+.++...-+ 
T Consensus       288 ~~a~~vLvlGGGD-GLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         288 RGARSVLVLGGGD-GLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             cccceEEEEcCCc-hHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            4568999999995 888888877  67 578999999999999999  4444432   124699999999998876544 


Q ss_pred             CccEEEecccccCC----hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMS----KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~----~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+|+++--=.-+    .---.++...+.++++++|++++..+
T Consensus       365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            59999987421111    11126788899999999999999764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.92  E-value=3.8e-05  Score=73.02  Aligned_cols=102  Identities=22%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccc-cc-CC-Ccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVK-EK-LG-EYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~-~~-~~-~fD  204 (284)
                      .++.+|+.+|+||+|+-++.+|+ .....+|+.+|++++.++.|++.....     .+..... +..... .. .+ .+|
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCC
Confidence            44459999999999999999998 455588999999999999999943221     1122111 111111 11 12 599


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +||-++..       ...+++..+.++|||.+++-...+
T Consensus       241 ~vie~~G~-------~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         241 VVIEAVGS-------PPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             EEEECCCC-------HHHHHHHHHHhcCCCEEEEEeccC
Confidence            99987663       237888999999999999987544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.90  E-value=4.6e-05  Score=72.25  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=73.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      .|......++++|+.+|.|.+|..++.+|++  .|++|+++|++++-.+.|+++    |   .. .++.+.-.+......
T Consensus       158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~l----G---Ad-~~i~~~~~~~~~~~~  227 (339)
T COG1064         158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKL----G---AD-HVINSSDSDALEAVK  227 (339)
T ss_pred             ehhhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHh----C---Cc-EEEEcCCchhhHHhH
Confidence            3444457899999999999999999999993  669999999999998888874    3   12 222221111222222


Q ss_pred             -CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          202 -EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       202 -~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                       .||+|+....        ..-++...+.|++||++++-...
T Consensus       228 ~~~d~ii~tv~--------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         228 EIADAIIDTVG--------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hhCcEEEECCC--------hhhHHHHHHHHhcCCEEEEECCC
Confidence             3999985422        34567778899999999987644

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.87  E-value=5e-05  Score=75.69  Aligned_cols=99  Identities=23%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-------------  195 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-------------  195 (284)
                      .++.+|+.+|+|+.|+.++.+|+  ..|+.|+.+|.+++..+.+++    +|.     +++.-|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak--~lGA~V~v~d~~~~rle~a~~----lGa-----~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAAN--SLGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccccceeecC
Confidence            57899999999999999999998  478999999999998777765    342     222222100             


Q ss_pred             ----------ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          196 ----------VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       196 ----------~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                                +.....++|+||.++++...+.+ .=+.+++.+.||||++++=-
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP-~Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAP-KLITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCC-eeehHHHHhhCCCCCEEEEe
Confidence                      12224579999998888332232 23778889999999997743

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=9.7e-05  Score=67.63  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=59.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC-Cc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG-EY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~-~f  203 (284)
                      ...+.++..|++||.|.+.+|... ++   .+.+|++|++|+..++.-++...    ..++++++.+|++....+-- ++
T Consensus        25 ~a~~~~~d~VlEIGpG~GaLT~~L-l~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~   96 (259)
T COG0030          25 AANISPGDNVLEIGPGLGALTEPL-LE---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQP   96 (259)
T ss_pred             hcCCCCCCeEEEECCCCCHHHHHH-Hh---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCC
Confidence            445677899999999998888664 45   67889999999999998888655    23689999999976554311 57


Q ss_pred             cEEEec
Q 036061          204 DCIFLA  209 (284)
Q Consensus       204 D~V~~a  209 (284)
                      +.|+.+
T Consensus        97 ~~vVaN  102 (259)
T COG0030          97 YKVVAN  102 (259)
T ss_pred             CEEEEc
Confidence            888755

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.78  E-value=0.00014  Score=66.72  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      ++..++...++..||+||-||+-+|-.+| .   .|.+|+++++||.+++.-.+.++-.. .+...+++.||...  .++
T Consensus        49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e---~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d~  121 (315)
T KOG0820|consen   49 QIVEKADLKPTDVVLEVGPGTGNLTVKLL-E---AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TDL  121 (315)
T ss_pred             HHHhccCCCCCCEEEEeCCCCCHHHHHHH-H---hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CCC
Confidence            34456677999999999999987776555 3   68999999999999999999998887 68899999999954  445


Q ss_pred             CCccEEEe
Q 036061          201 GEYDCIFL  208 (284)
Q Consensus       201 ~~fD~V~~  208 (284)
                      ..||.++.
T Consensus       122 P~fd~cVs  129 (315)
T KOG0820|consen  122 PRFDGCVS  129 (315)
T ss_pred             cccceeec
Confidence            67999875

>PRK10742 putative methyltransferase; Provisional

Probab=97.78  E-value=0.00015  Score=66.04  Aligned_cols=82  Identities=9%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCCCCC--EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CC-CCCCeEEEEecccccc
Q 036061          127 GVVNPK--KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD------IE-FEKRMKFVTCDIMQVK  197 (284)
Q Consensus       127 ~~~~~~--~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------G~-l~~~I~f~~~D~~~~~  197 (284)
                      +++++.  +|||.=+| +|-.++.+|.   .|++|+.+|.||.+...-++.++++      +. +..+|+++++|+.++.
T Consensus        83 glk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L  158 (250)
T PRK10742         83 GIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_pred             CCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence            456666  99999999 5788899988   6999999999999999999999885      31 2368999999999877


Q ss_pred             ccCC-CccEEEecccc
Q 036061          198 EKLG-EYDCIFLAALV  212 (284)
Q Consensus       198 ~~~~-~fD~V~~aa~v  212 (284)
                      .... .||+||++..-
T Consensus       159 ~~~~~~fDVVYlDPMf  174 (250)
T PRK10742        159 TDITPRPQVVYLDPMF  174 (250)
T ss_pred             hhCCCCCcEEEECCCC
Confidence            6543 59999999754

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.75  E-value=0.00021  Score=67.06  Aligned_cols=114  Identities=20%  Similarity=0.290  Sum_probs=77.7

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc------cccc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI------MQVK  197 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~------~~~~  197 (284)
                      ++.+.+.+.+||.+|+||+|+-++..|+ .+.-.+|+.+|+++.+++.|++    +|.   +...-....      .+..
T Consensus       163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~Ga---~~~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FGA---TVTDPSSHKSSPQELAELV  234 (354)
T ss_pred             hhcCcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hCC---eEEeeccccccHHHHHHHH
Confidence            3445689999999999999999999999 4556789999999999999998    442   222222221      1111


Q ss_pred             c-cC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCC
Q 036061          198 E-KL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE  253 (284)
Q Consensus       198 ~-~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~  253 (284)
                      . .+  ..||++|-.+.+       ...++.....+++||++++.. +|-...-+|..+
T Consensus       235 ~~~~g~~~~d~~~dCsG~-------~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~  285 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCSGA-------EVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIID  285 (354)
T ss_pred             HhhccccCCCeEEEccCc-------hHHHHHHHHHhccCCEEEEec-cCCCccccChhh
Confidence            1 12  249999987765       234556677889999965543 554445555444

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.74  E-value=0.00013  Score=72.90  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=54.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcC-------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-----
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHL-------KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-----  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~-------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-----  197 (284)
                      .+.+|+|.|||++++..-.+.+ ..       ....++|+|+|+.++..|+.++...+.  ..+++.++|.....     
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~-~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKK-NEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHH-HHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence            4579999999987776544433 21       125799999999999999999987762  34566666644211     


Q ss_pred             ccCCCccEEEecc
Q 036061          198 EKLGEYDCIFLAA  210 (284)
Q Consensus       198 ~~~~~fD~V~~aa  210 (284)
                      ...+.||+|+.+.
T Consensus       108 ~~~~~fD~IIgNP  120 (524)
T TIGR02987       108 SYLDLFDIVITNP  120 (524)
T ss_pred             cccCcccEEEeCC
Confidence            1224799999876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.72  E-value=0.00075  Score=60.21  Aligned_cols=104  Identities=17%  Similarity=0.158  Sum_probs=79.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+++||||-.. +=+++|-+ -.+-..+++.|+++..++.|.+++.+.+ +.++|+...+|+........++|.|.+
T Consensus        15 ~~~~~iaDIGsDHA-YLp~~Lv~-~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          15 KQGARIADIGSDHA-YLPIYLVK-NNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             HcCCceeeccCchh-HhHHHHHh-cCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence            55667999999984 44455555 2567789999999999999999999999 899999999999776655457999988


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.+   --.--.+++++-.+.++.=-++++
T Consensus        92 AGM---GG~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          92 AGM---GGTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             eCC---cHHHHHHHHHHhhhhhcCcceEEE
Confidence            743   223446788888887764344544

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.71  E-value=0.00048  Score=64.14  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----C
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----L  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----~  200 (284)
                      +.+.++...+|.==|.+|.|-..|.+ ....++++++|.||.|++.|++.....+   .|++++++.-.++...     .
T Consensus        19 L~~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i   94 (314)
T COG0275          19 LAPKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGI   94 (314)
T ss_pred             cccCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCC
Confidence            35677788888777777999988887 3445779999999999999999998876   5999999987655432     2


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      +.+|-|+++-.|
T Consensus        95 ~~vDGiL~DLGV  106 (314)
T COG0275          95 GKVDGILLDLGV  106 (314)
T ss_pred             CceeEEEEeccC
Confidence            367877766555

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.71  E-value=0.00015  Score=63.45  Aligned_cols=142  Identities=16%  Similarity=0.223  Sum_probs=95.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ...+.|+|+|+++++ ..-|+   ..-+|.+|+.||...+.|.++++-.|+  .+++++.+|+.+..+  ..-|+|+..-
T Consensus        33 ~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEm  104 (252)
T COG4076          33 EDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEM  104 (252)
T ss_pred             hhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHH
Confidence            478999999986654 44454   467899999999999999999988885  799999999987554  4578886332


Q ss_pred             cc-cCChHHHHHHHHHHHhhcCCCcEEEEEe---c-C----ccccccCccCCC-ccCCC---cEEEEEecCCcceeeeEE
Q 036061          211 LV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS---A-K----GARAFLYPVVEK-HDLLD---FELLSVFHPTNEVINSVV  277 (284)
Q Consensus       211 ~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~---~-~----glr~~lYp~v~~-~dl~g---fe~~~~~hP~~~v~nsvi  277 (284)
                      += .+-.++...+++.+.+.|+-++.++=..   + +    .++...|..--+ ++...   +|++.-..|..+|.|--+
T Consensus       105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~~~l  184 (252)
T COG4076         105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNKKL  184 (252)
T ss_pred             hhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhccee
Confidence            10 1113666789999999999999987532   1 2    233444443212 23333   455433446667777544


Q ss_pred             EEe
Q 036061          278 LVR  280 (284)
Q Consensus       278 ~~r  280 (284)
                      -.+
T Consensus       185 ele  187 (252)
T COG4076         185 ELE  187 (252)
T ss_pred             EEe
Confidence            433

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00014  Score=68.05  Aligned_cols=103  Identities=19%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|..||.|-.|..|.-+|-  ..|+.||-+|+|.+.+..-...   .+   .|++..-....++.....+.|+|+-
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~---f~---~rv~~~~st~~~iee~v~~aDlvIg  237 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDL---FG---GRVHTLYSTPSNIEEAVKKADLVIG  237 (371)
T ss_pred             CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHh---hC---ceeEEEEcCHHHHHHHhhhccEEEE
Confidence            56789999999999999999987  7899999999999887665553   33   4788888888777777788999998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+++-.+.+|. +.+++.+.||||++++=-.
T Consensus       238 aVLIpgakaPkL-vt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         238 AVLIPGAKAPKL-VTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEecCCCCcee-hhHHHHHhcCCCcEEEEEE
Confidence            888865556664 8899999999999987543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.68  E-value=0.00018  Score=58.81  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      .++|||||. |..++++++ ..++++|++||.+|.+.+.++++++..| + .+++++...+.+
T Consensus         1 ~vlDiGa~~-G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANI-GDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCc-cHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence            379999995 778888887 5677899999999999999999999888 4 469999888754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.66  E-value=0.0014  Score=59.35  Aligned_cols=111  Identities=21%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cC-
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KL-  200 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~-  200 (284)
                      +.+.+.-.+++||+||-+=  ++|+.+|- ..+..+|+.+|||+..++.=++.+++.|.   +|+.+..|+.+-.+ .+ 
T Consensus        37 ~~~~gdL~gk~il~lGDDD--LtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~  110 (243)
T PF01861_consen   37 MAERGDLEGKRILFLGDDD--LTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELR  110 (243)
T ss_dssp             HHHTT-STT-EEEEES-TT---HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTS
T ss_pred             HHhcCcccCCEEEEEcCCc--HHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHh
Confidence            3455667899999999984  68888876 46778999999999999999999999995   49999999986433 33 


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCc-EEEEEec
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGG-VLLVRSA  241 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg-~lv~r~~  241 (284)
                      +.||++|.+.--  +.+--.-++..-...||.-| ...+..+
T Consensus       111 ~~fD~f~TDPPy--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~  150 (243)
T PF01861_consen  111 GKFDVFFTDPPY--TPEGLKLFLSRGIEALKGEGCAGYFGFT  150 (243)
T ss_dssp             S-BSEEEE---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred             cCCCEEEeCCCC--CHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence            579999988632  23444567777888888766 4444433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.66  E-value=8e-05  Score=65.97  Aligned_cols=106  Identities=16%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KL  200 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~  200 (284)
                      .+|+.|+++|.-. |-|++++|+.   ....++|+|||||......  +..+..+ +.++|+|+.||..+...     ..
T Consensus        31 ~kPd~IIE~Gi~~-GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   31 LKPDLIIETGIAH-GGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             H--SEEEEE--TT-SHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred             hCCCeEEEEecCC-CchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence            4799999999964 6799988862   1267899999997544322  2233455 67899999999875321     11


Q ss_pred             ---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 ---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ....+|+.++...  .+.-.+.|+.....+++|+.+|+.+
T Consensus       107 ~~~~~~vlVilDs~H~--~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  107 ASPPHPVLVILDSSHT--HEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             hccCCceEEEECCCcc--HHHHHHHHHHhCccCCCCCEEEEEe
Confidence               2456888887631  2445677888999999999999976

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.65  E-value=0.00027  Score=67.12  Aligned_cols=87  Identities=10%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++++||||+|+|.|-. |.+   .|++|++||..+-    +.+ +..    ..+|++..+|........+.+|+|+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~-L~~---rG~~V~AVD~g~l----~~~-L~~----~~~V~h~~~d~fr~~p~~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQ-LVR---RGMFVTAVDNGPM----AQS-LMD----TGQVEHLRADGFKFRPPRKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHH-HHH---cCCEEEEEechhc----CHh-hhC----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence            6889999999999999854 555   6889999996642    222 222    24899999999776554567999987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCC
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDG  233 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pG  233 (284)
                      +..     +...++.+.+.+.+..|
T Consensus       277 Dmv-----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMV-----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ecc-----cCHHHHHHHHHHHHhcC
Confidence            644     45557888888888777

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.63  E-value=0.00019  Score=63.04  Aligned_cols=103  Identities=20%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|||.|+|+ |+.++.-|+  .-...|+..|++|...+..+-+++..|.   .|.|...|...   +...||+++.
T Consensus        78 VrgkrVLd~gags-gLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~La  148 (218)
T COG3897          78 VRGKRVLDLGAGS-GLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLA  148 (218)
T ss_pred             cccceeeeccccc-ChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEe
Confidence            6789999999997 788888777  2335699999999999999999999995   89999999854   4457999985


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .-++ .+...-.+++.-..+....|..+++-+.
T Consensus       149 gDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp  180 (218)
T COG3897         149 GDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDP  180 (218)
T ss_pred             ecee-cCchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            5443 3445556677755555555556665443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.62  E-value=0.00032  Score=60.68  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             EEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEeccccc
Q 036061          133 KVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQV  196 (284)
Q Consensus       133 ~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~~  196 (284)
                      +|..||+|.+|-. |.++|.   .|.+|+-+|.|+++++.+++.+++       .|.+        .+++++. .|..+ 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~-   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR---AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEE-   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH---TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGG-
T ss_pred             CEEEEcCCHHHHHHHHHHHh---CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHH-
Confidence            6889999988744 344444   699999999999999999988765       1211        2456653 44322 


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ..+.|+|+-+.  ..+.+-|.+++.++.+.++|+.+|...+
T Consensus        76 ---~~~adlViEai--~E~l~~K~~~~~~l~~~~~~~~ilasnT  114 (180)
T PF02737_consen   76 ---AVDADLVIEAI--PEDLELKQELFAELDEICPPDTILASNT  114 (180)
T ss_dssp             ---GCTESEEEE-S---SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred             ---Hhhhheehhhc--cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence               23689998654  2456899999999999999999998876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.59  E-value=0.00015  Score=64.34  Aligned_cols=88  Identities=22%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+...|+|.|||-..     ||+....+.+|+.+|.-.            ..   +  .+..+|..++|-+.+..|+|++
T Consensus        71 ~~~~viaD~GCGdA~-----la~~~~~~~~V~SfDLva------------~n---~--~Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   71 PKSLVIADFGCGDAK-----LAKAVPNKHKVHSFDLVA------------PN---P--RVTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             -TTS-EEEES-TT-H-----HHHH--S---EEEEESS-------------SS---T--TEEES-TTS-S--TT-EEEEEE
T ss_pred             CCCEEEEECCCchHH-----HHHhcccCceEEEeeccC------------CC---C--CEEEecCccCcCCCCceeEEEE
Confidence            445799999999633     444333467899999872            12   2  3667999999988888999876


Q ss_pred             cc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +- +.|   .+...++.+.+|.|||||.|.+...
T Consensus       129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV  159 (219)
T PF05148_consen  129 CLSLMG---TNWPDFIREANRVLKPGGILKIAEV  159 (219)
T ss_dssp             ES---S---S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EhhhhC---CCcHHHHHHHHheeccCcEEEEEEe
Confidence            53 444   6888999999999999999998764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.56  E-value=0.00046  Score=64.11  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHh-----hcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAK-----NHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~-----~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--  199 (284)
                      ...++.+|+|-.||++++-.-.+..     ......++.|+|+|+.++..|+-++.-.|.-.....+..+|....+..  
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            4567789999999987764333321     013678999999999999999987755552123356889998654443  


Q ss_pred             CCCccEEEecccccCC---hH-----------------HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          200 LGEYDCIFLAALVGMS---KE-----------------EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~---~~-----------------~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ...||+|+...--+..   ..                 .-..++.++.+.|++||++++--+
T Consensus       123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            2479999977633221   00                 113588999999999998766543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.54  E-value=0.00053  Score=66.90  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=72.1

Q ss_pred             chhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 036061          110 GNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK  187 (284)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~  187 (284)
                      +|-....+--+..+.+..  ..++++|+.+|+|++|......++  ..|++|+.+|+|+...+.|++    .|.     +
T Consensus       179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~-----~  247 (413)
T cd00401         179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY-----E  247 (413)
T ss_pred             cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC-----E
Confidence            443333333334444432  258899999999999999888887  578999999999998777765    462     1


Q ss_pred             EEEeccccccccCCCccEEEecccccCChHHHHHHHHH-HHhhcCCCcEEEEEe
Q 036061          188 FVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKH-IRKYMKDGGVLLVRS  240 (284)
Q Consensus       188 f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~-l~~~l~pGg~lv~r~  240 (284)
                      ..  +..+   ....+|+||.+...      + .++.. ..+.|++||+++.-.
T Consensus       248 ~~--~~~e---~v~~aDVVI~atG~------~-~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         248 VM--TMEE---AVKEGDIFVTTTGN------K-DIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             Ec--cHHH---HHcCCCEEEECCCC------H-HHHHHHHHhcCCCCcEEEEeC
Confidence            11  1112   22468999875432      2 34444 588999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.53  E-value=0.00023  Score=66.84  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------cC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------KL  200 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~~  200 (284)
                      .+.++...+|-=-|.+|-|...|.+  .++++++|+|.||+|++.|++.+...   .+++.|++++-.++..      ..
T Consensus        17 ~~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~l~~~~~~   91 (310)
T PF01795_consen   17 NPKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEYLKELNGI   91 (310)
T ss_dssp             T--TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHHHHHTTTT
T ss_pred             CcCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHHHHHccCC
Confidence            4577888999766777999888876  67799999999999999999977654   4699999999876543      23


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      ..+|.|+++-.|
T Consensus        92 ~~~dgiL~DLGv  103 (310)
T PF01795_consen   92 NKVDGILFDLGV  103 (310)
T ss_dssp             S-EEEEEEE-S-
T ss_pred             CccCEEEEcccc
Confidence            468988877544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.0022  Score=56.76  Aligned_cols=128  Identities=19%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------cCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------KLG  201 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~~~  201 (284)
                      ..++++|+|+|+-|+|.|=+ +++....+..|++||+.|-.             .-..|.|+.+|.++-..      .++
T Consensus        43 ~~~~~~ViDLGAAPGgWsQv-a~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQV-AAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHH-HHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            37889999999999998744 55545666779999999743             23469999999986321      222


Q ss_pred             --CccEEEeccc--c-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCcccc--ccCccCCCccC-CCcEEEEEe
Q 036061          202 --EYDCIFLAAL--V-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKGARA--FLYPVVEKHDL-LDFELLSVF  266 (284)
Q Consensus       202 --~fD~V~~aa~--v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~glr~--~lYp~v~~~dl-~gfe~~~~~  266 (284)
                        .+|+|+.+..  + |...       .--..+++-...+|+|||.+++-...|--.  +++      .+ ..|+.+...
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~------~~~~~F~~v~~~  182 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK------ALRRLFRKVKIF  182 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH------HHHHhhceeEEe
Confidence              3799995532  2 2211       123556667778999999999988665211  111      12 468888888


Q ss_pred             cCCcceeee
Q 036061          267 HPTNEVINS  275 (284)
Q Consensus       267 hP~~~v~ns  275 (284)
                      .|..-.-||
T Consensus       183 KP~aSR~~S  191 (205)
T COG0293         183 KPKASRKRS  191 (205)
T ss_pred             cCccccCCC
Confidence            888877776

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=97.45  E-value=0.0024  Score=56.86  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             CCCCEEEEeccCCCh-hHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-ccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMP-LTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp-~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~~~~fD~  205 (284)
                      ...+.++++.|+..+ -|++-||-+ ..+|+++++|-.+++.....++.+...| +.+.++|+.||. .++...+...|+
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~iDF  118 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGIDF  118 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCCCE
Confidence            566889999765222 245555543 3789999999999999999999999889 688889999985 456777888999


Q ss_pred             EEecccccCChHHHH-HHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKV-KIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~-~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++++.-.    ++.. ++|+. .+.=+.|++++..++
T Consensus       119 ~vVDc~~----~d~~~~vl~~-~~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  119 VVVDCKR----EDFAARVLRA-AKLSPRGAVVVCYNA  150 (218)
T ss_pred             EEEeCCc----hhHHHHHHHH-hccCCCceEEEEecc
Confidence            9998764    6666 77775 444355666666664

The function of this family is unknown.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.45  E-value=0.00082  Score=61.33  Aligned_cols=102  Identities=13%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccccC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEKL  200 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~~  200 (284)
                      .+....++++||.+|+|++|..++.+|+  ..|++ |+++|.+++..+.|++    +|. ..-+....  ..+.+.. ..
T Consensus       114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~~-~~  185 (280)
T TIGR03366       114 EAAGDLKGRRVLVVGAGMLGLTAAAAAA--AAGAARVVAADPSPDRRELALS----FGA-TALAEPEVLAERQGGLQ-NG  185 (280)
T ss_pred             HhccCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC-cEecCchhhHHHHHHHh-CC
Confidence            3444567899999999999999999999  35776 9999999988877766    452 11111100  0011111 11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||-+...       ...++...+.++|||++++-.
T Consensus       186 ~g~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       186 RGVDVALEFSGA-------TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCCCEEEECCCC-------hHHHHHHHHHhcCCCEEEEec
Confidence            359999864331       235677888999999998765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=97.43  E-value=0.00085  Score=63.09  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++    .|.    . +...+   .... ..+|+||
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~-~~~~~---~~~~-~g~d~vi  227 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----T-YLIDD---IPED-LAVDHAF  227 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----e-eehhh---hhhc-cCCcEEE
Confidence            46789999999999999988888733446789999999998888865    331    1 11111   1111 2589998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -+..-    ......++...+.|++||++++-.
T Consensus       228 D~~G~----~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         228 ECVGG----RGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ECCCC----CccHHHHHHHHHhCcCCcEEEEEe
Confidence            54431    112346788889999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.43  E-value=0.00092  Score=63.16  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCC----CCCCeEEEEeccccccc
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIE----FEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~----l~~~I~f~~~D~~~~~~  198 (284)
                      -++|..||+|.+|..-. .+|   ..|.+|+.+|+++++.+.+++.+++       .|.    ...++++.. |..   .
T Consensus         7 i~~VaVIGaG~MG~giA~~~a---~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~   79 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARAL---AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A   79 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence            47899999998875522 233   3799999999999998887765432       221    113445432 322   2


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..++.|+|+.+.  ..+.+-|..+++++.+.++|+.+|...+
T Consensus        80 av~~aDlViEav--pE~l~vK~~lf~~l~~~~~~~aIlaSnT  119 (321)
T PRK07066         80 CVADADFIQESA--PEREALKLELHERISRAAKPDAIIASST  119 (321)
T ss_pred             HhcCCCEEEECC--cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            345789999763  3455789999999999999998655544

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.43  E-value=0.00068  Score=63.83  Aligned_cols=97  Identities=16%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC---ChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI---DEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi---d~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ..++.+|+.+|+|++|..++.+|+  ..|++|++++.   +++..+.++    ++|.  +.+.....|..+ ......||
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak--~~G~~vi~~~~~~~~~~~~~~~~----~~Ga--~~v~~~~~~~~~-~~~~~~~d  240 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLR--LRGFEVYVLNRRDPPDPKADIVE----ELGA--TYVNSSKTPVAE-VKLVGEFD  240 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHH----HcCC--EEecCCccchhh-hhhcCCCC
Confidence            457899999999999999999999  46889999997   666666554    4663  112111111111 11124699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +||-+..-       ...+....+.|++||.+++-.
T Consensus       241 ~vid~~g~-------~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATGV-------PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcCC-------HHHHHHHHHHccCCcEEEEEe
Confidence            99865442       126778889999999988754

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.39  E-value=0.00096  Score=61.01  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ...++||||+|-++.|.. ||. ++  .+|++.|.|+.|.    ..+++-|.     +.+  |..++.....+||+|-.-
T Consensus        94 ~~~~lLDlGAGdG~VT~~-l~~-~f--~~v~aTE~S~~Mr----~rL~~kg~-----~vl--~~~~w~~~~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTER-LAP-LF--KEVYATEASPPMR----WRLSKKGF-----TVL--DIDDWQQTDFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHHHH-HHh-hc--ceEEeecCCHHHH----HHHHhCCC-----eEE--ehhhhhccCCceEEEeeh
Confidence            567999999999877755 566 33  4599999999993    34444552     333  333344333479999654


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.--. .....+|+++++.|+|+|++++.-
T Consensus       159 NvLDRc-~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  159 NVLDRC-DRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhhhcc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence            443111 445689999999999999998844

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.0011  Score=65.51  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CC---
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE---  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~---  202 (284)
                      +...++-++|+-||+ |...+.+|+   +-.+|.||+++|++++-|++++...|.  .+.+|++|-++++...+ +.   
T Consensus       380 ~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sNa~Fi~gqaE~~~~sl~~~~~~  453 (534)
T KOG2187|consen  380 GLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGI--SNATFIVGQAEDLFPSLLTPCCD  453 (534)
T ss_pred             CCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcCc--cceeeeecchhhccchhcccCCC
Confidence            457789999999997 677788988   668899999999999999999999995  68999999777654432 22   


Q ss_pred             -cc-EEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 -YD-CIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 -fD-~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       =+ +++++.- .|++    ..+++.+.++-++- ++++++
T Consensus       454 ~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~-rlvyvS  489 (534)
T KOG2187|consen  454 SETLVAIIDPPRKGLH----MKVIKALRAYKNPR-RLVYVS  489 (534)
T ss_pred             CCceEEEECCCccccc----HHHHHHHHhccCcc-ceEEEE
Confidence             24 4555543 3443    45777777774444 455555

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.35  E-value=0.0027  Score=58.60  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=79.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---------------------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE---------------------------  181 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~---------------------------  181 (284)
                      ..+.+||.-||| +|--+.-+|+   .|..+.|.|.|--|+=.++-++.....                           
T Consensus        55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~  130 (270)
T PF07942_consen   55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR  130 (270)
T ss_pred             CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence            456899999999 6777888998   699999999999998777766553000                           


Q ss_pred             -----------CCCCeEEEEeccccccccC---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          182 -----------FEKRMKFVTCDIMQVKEKL---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       182 -----------l~~~I~f~~~D~~~~~~~~---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                                 -..++.+..||..++-...   +.||+|+.+-++ -++++-.+.++.|.+.|||||..|
T Consensus       131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCCEEE
Confidence                       1246777888887766555   579999877665 235778899999999999999654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.34  E-value=0.00081  Score=55.69  Aligned_cols=78  Identities=21%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhc---CCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEeccccccccCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNH---LKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~---~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..++.+|+|+|||- |+-+..||...   .++.+|++||.++..++.|++..++.+. +.+++++..++..+... ....
T Consensus        23 ~~~~~~vvD~GsG~-GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  100 (141)
T PF13679_consen   23 SKRCITVVDLGSGK-GYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP  100 (141)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence            36789999999995 78788887611   3889999999999999999999998872 24678888887754332 2345


Q ss_pred             cEEE
Q 036061          204 DCIF  207 (284)
Q Consensus       204 D~V~  207 (284)
                      ++++
T Consensus       101 ~~~v  104 (141)
T PF13679_consen  101 DILV  104 (141)
T ss_pred             eEEE
Confidence            5555

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.33  E-value=0.0024  Score=59.83  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      .+...+++.+||..|+|++|..++.+|+  ..|++|+++|.+++..+.|++    +|. ..-+.     ..+  .....+
T Consensus       159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~--~~G~~vi~~~~~~~~~~~a~~----~Ga-~~vi~-----~~~--~~~~~~  224 (329)
T TIGR02822       159 LRASLPPGGRLGLYGFGGSAHLTAQVAL--AQGATVHVMTRGAAARRLALA----LGA-ASAGG-----AYD--TPPEPL  224 (329)
T ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHH----hCC-ceecc-----ccc--cCcccc
Confidence            3445678999999999999999999999  468899999999988666655    663 21111     111  111358


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+++....+    .   ..+....+.+++||++++-.
T Consensus       225 d~~i~~~~~----~---~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       225 DAAILFAPA----G---GLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             eEEEECCCc----H---HHHHHHHHhhCCCcEEEEEe
Confidence            988765443    2   36788889999999998754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.31  E-value=0.0057  Score=57.99  Aligned_cols=194  Identities=15%  Similarity=0.132  Sum_probs=121.2

Q ss_pred             CCCCchh--HHHHHHHHHHhccCCcc-cc--------ccc--Cch-hHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCc
Q 036061           34 SLKPSKQ--VNSLFTHLVKLCTPPSS-ID--------IKT--LPQ-EVQEMRESLIVLCGRAEGLLELEFATFFAKTPQP   99 (284)
Q Consensus        34 ~l~p~~~--vn~lf~~Lv~lc~~~~~-~~--------~~~--~~~-~~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~~~p   99 (284)
                      +.+|...  .+.++--|++.....+. +.        +..  +.. .-.++.+.+-...++....-..+|.+.+..+.+|
T Consensus        51 ~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~  130 (342)
T KOG3178|consen   51 PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDA  130 (342)
T ss_pred             CCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccC
Confidence            3444432  66677777766654331 11        110  111 1245556666777777778888999999988665


Q ss_pred             cccc---ccCCCcchhh---hhhHH---HHHHHHhc-------CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEe
Q 036061          100 LNNL---NLFPYYGNYV---KLANL---EYRILDEN-------GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFD  163 (284)
Q Consensus       100 ~~~L---~~fpy~~ny~---~l~~~---E~~~l~~~-------~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iD  163 (284)
                      ...-   ..|-|..-..   ..++.   ....+..-       +...-...+|+|+|.+-.+..++ . .+|.  |.+|+
T Consensus       131 ~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll-~-~fp~--ik~in  206 (342)
T KOG3178|consen  131 FATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLL-S-KYPH--IKGIN  206 (342)
T ss_pred             CccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHH-H-hCCC--Cceee
Confidence            5544   2355554333   22221   11111110       11234899999999655554444 4 4655  77777


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|..-+..++.... .|     |+.+-||...-   ...-|+||+.-.+ +|+.++=.++|+++++-|+|||.+++-.
T Consensus       207 fdlp~v~~~a~~~~-~g-----V~~v~gdmfq~---~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  207 FDLPFVLAAAPYLA-PG-----VEHVAGDMFQD---TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             cCHHHHHhhhhhhc-CC-----cceeccccccc---CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            77777777777654 44     78888998642   3346799876544 8899999999999999999999998855

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.31  E-value=0.0027  Score=58.83  Aligned_cols=99  Identities=20%  Similarity=0.305  Sum_probs=69.7

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|..- ..+|+   .|.+|+.+|+++++++.+++.+++       .|.+.        .++++ +.|.  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--   79 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--   79 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH--
Confidence            589999999877552 22343   799999999999999997766432       23111        23333 2332  


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~  240 (284)
                        ....+.|+|+.+.  ..+.+-|..++..+-+.+ +||.+++..+
T Consensus        80 --~~~~~~d~ViEav--~E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         80 --GDFADRQLVIEAV--VEDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             --HHhCCCCEEEEec--ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence              2346789999763  345688999999999998 8888887755

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.30  E-value=0.00049  Score=59.92  Aligned_cols=102  Identities=20%  Similarity=0.343  Sum_probs=62.4

Q ss_pred             CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ++|..||.|-+|+ +|..||+   .|.+|+|+|+|++.++.-++            ++++.. -..+.+|. .|..+   
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~~---   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIEE---   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHHH---
T ss_pred             CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhhh---
Confidence            5899999997775 4667777   89999999999998877652            222221 02345553 33322   


Q ss_pred             cCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .....|++|++.-...      +...-..+++.+.+.+++|.+++++|.
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            2235799987753211      123347889999999999999999983

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.30  E-value=0.0021  Score=59.11  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-------HhcCCCC--------CCeEEEEeccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-------SSDIEFE--------KRMKFVTCDIMQV  196 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-------~~~G~l~--------~~I~f~~~D~~~~  196 (284)
                      ++|..||+|.+|.+-.....  ..|.+|+.+|++++.++.+++.+       .+.|.+.        .++++ +.|..  
T Consensus         4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~--   78 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD--   78 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence            47999999987766433332  36789999999999998776433       2233111        13443 23321  


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                        ..++.|+|+.+..  .+..-|.++++++.+.++|+.+++..
T Consensus        79 --~~~~aDlVi~av~--e~~~~k~~~~~~l~~~~~~~~il~s~  117 (282)
T PRK05808         79 --DLKDADLVIEAAT--ENMDLKKKIFAQLDEIAKPEAILATN  117 (282)
T ss_pred             --HhccCCeeeeccc--ccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence              2457899998753  23467889999999999999887443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0026  Score=56.88  Aligned_cols=109  Identities=15%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~  205 (284)
                      -.++.|||.||=| +|+..-.+..  .+-..=+-|+..|+..++-|...=..   .++|-...|-..++...+  +.||-
T Consensus        99 ~tkggrvLnVGFG-MgIidT~iQe--~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDG  172 (271)
T KOG1709|consen   99 STKGGRVLNVGFG-MGIIDTFIQE--APPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDG  172 (271)
T ss_pred             hhCCceEEEeccc-hHHHHHHHhh--cCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcce
Confidence            3789999999999 7877666655  34445566899999988777643222   357777777766666544  46999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |+.+.+- ..-++-..+.+++.+.|||||++.+=++-|
T Consensus       173 I~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  173 IYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             eEeechh-hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            9988763 223777889999999999999988766533

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.25  E-value=0.0026  Score=61.68  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cC-CCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KL-GEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~-~~fD~  205 (284)
                      ++++.||||..+-|+|=|+. +|..+.-.+.|.+-|.+...+..-+.+++++|.  ++.-....|..+++. .. ++||-
T Consensus       239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCcccce
Confidence            58899999999999998865 555345567899999999999999999999995  566667788876542 12 26999


Q ss_pred             EEecccc-c--CChHH------------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV-G--MSKEE------------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v-~--~~~~~------------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.++|-- |  +-..+                  ..++|.+....+++||+||+.+
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            9988732 2  21000                  1678888999999999999977

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.22  E-value=0.0019  Score=58.98  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---  200 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---  200 (284)
                      ......++..|+|||.|+|-+|... ++   .+.+|+++|+|+...+.-++.+.    ...+++++.+|+.++....   
T Consensus        24 ~~~~~~~~~~VlEiGpG~G~lT~~L-~~---~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   24 DALDLSEGDTVLEIGPGPGALTREL-LK---RGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             HHHTCGTTSEEEEESSTTSCCHHHH-HH---HSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCS
T ss_pred             HhcCCCCCCEEEEeCCCCccchhhH-hc---ccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhc
Confidence            3445668999999999998777665 44   33899999999999888887555    2368999999998755432   


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCC---cEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG---GVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG---g~lv~r~  240 (284)
                      .....|+ +.+ ..  .--..++.++...-+.|   ..+++..
T Consensus        96 ~~~~~vv-~Nl-Py--~is~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen   96 NQPLLVV-GNL-PY--NISSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             SSEEEEE-EEE-TG--TGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             CCceEEE-EEe-cc--cchHHHHHHHhhcccccccceEEEEeh
Confidence            1223444 333 11  22245777777644443   4455543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.21  E-value=0.0022  Score=59.27  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----------CCC--------CCCeEEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD----------IEF--------EKRMKFVTCDI  193 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----------G~l--------~~~I~f~~~D~  193 (284)
                      ++|..||+|.+|.+-.....  ..|.+|+.+|++++.++.+++.+++.          |..        ..++++. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            58999999988765333222  36889999999999999877654331          210        0123332 222


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                          ....+.|+|+.+..  .+.+.|..+++++.+.++|+.+++.
T Consensus        81 ----~~~~~aDlVieav~--e~~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         81 ----ESLSDADFIVEAVP--EKLDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence                12356899998753  2335689999999999999887653

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=97.20  E-value=0.0016  Score=60.57  Aligned_cols=104  Identities=16%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--c
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--K  199 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~  199 (284)
                      +......++.+||.+|+|++|..++.+|+  ..|++ |+++|.+++..+.+++    +|. ..-+.....+...+..  .
T Consensus       156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak--~~G~~~vi~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         156 LRRVGVSGRDTVLVVGAGPVGLGALMLAR--ALGAEDVIGVDPSPERLELAKA----LGA-DFVINSGQDDVQEIRELTS  228 (339)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----hCC-CEEEcCCcchHHHHHHHhC
Confidence            33445678999999999999999999999  46788 9999999988777654    452 1111111111111111  1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...||+||-+..-       ...+....+.|++||++++-.
T Consensus       229 ~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         229 GAGADVAIECSGN-------TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence            2369999855432       124567778899999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.18  E-value=0.00084  Score=64.57  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -++.+|+.||+|..|..++..++  ..|++|+.+|.+++..+.+.+   ..|   ..+.....+..++.....++|+|+.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~--~lGa~V~v~d~~~~~~~~l~~---~~g---~~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMAN--GLGATVTILDINIDRLRQLDA---EFG---GRIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH---hcC---ceeEeccCCHHHHHHHHccCCEEEE
Confidence            36788999999999999998888  468899999999887655433   333   1232222222223333467999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..+ +.. .+. -+-++..+.|+||++++--.
T Consensus       237 a~~~~g~~-~p~-lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       237 AVLIPGAK-APK-LVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             ccccCCCC-CCc-CcCHHHHhcCCCCCEEEEEe
Confidence            7644 221 111 13466677899999877644

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.17  E-value=0.0041  Score=57.44  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIMQV  196 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~~~  196 (284)
                      ++|.+||+|.+|.+-.....  ..|.+|+.+|++++.++.+.+.+.+.       |.+.        .++++. .|.   
T Consensus         5 ~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   78 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL---   78 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence            68999999988765332222  36889999999999998876544321       3111        234442 232   


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                       ....+.|+|+.+..  .+.+-|..+++.+...++|+.+++.
T Consensus        79 -~~~~~aD~Vieavp--e~~~~k~~~~~~l~~~~~~~~ii~s  117 (292)
T PRK07530         79 -EDLADCDLVIEAAT--EDETVKRKIFAQLCPVLKPEAILAT  117 (292)
T ss_pred             -HHhcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             12457899997643  2345688999999999999988764

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.00024  Score=60.75  Aligned_cols=130  Identities=15%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEeccc-ccc-ccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIM-QVK-EKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~-~~~-~~~~~fD~  205 (284)
                      -.+++||++|.|-.+++++++|. ..+...|.-.|-++++++--++.....-. --+++....-+.- +.. .....||+
T Consensus        28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi  106 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI  106 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence            45689999999988999999998 67889999999999999988887755410 0122222111110 011 12236999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec---CccccccCccCCCccCCCcEEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA---KGARAFLYPVVEKHDLLDFELLS  264 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~---~glr~~lYp~v~~~dl~gfe~~~  264 (284)
                      |+.+--+.. .+-++.+.+.|+++|+|.|.-++-++   +.+..|+    +...-.||.++.
T Consensus       107 IlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~----de~~~~gf~v~l  163 (201)
T KOG3201|consen  107 ILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL----DEVGTVGFTVCL  163 (201)
T ss_pred             EEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH----HHHHhceeEEEe
Confidence            986543322 47788999999999999998777664   3344455    222235666654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=97.13  E-value=0.0017  Score=61.69  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGE  202 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~  202 (284)
                      ....++++||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+.....|..+....  .+.
T Consensus       187 ~~i~~g~~VlV~G~G~vG~~a~~lak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         187 AGVRPGQSVAVVGLGGVGLSALLGAV--AAGASQVVAVDLNEDKLALARE----LGA-TATVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHHH----cCC-ceEeCCCchhHHHHHHHHhCCC
Confidence            34678899999999999999999999  4678 69999999998887765    562 11111111121111111  125


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||-+..-       ...++...+.+++||+++.-.
T Consensus       260 ~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         260 VDYAFEMAGS-------VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCEEEECCCC-------hHHHHHHHHHHhcCCEEEEEc
Confidence            8999855331       135677788999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=97.09  E-value=0.0018  Score=60.07  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++||.+|+|++|+.++.+|+  ..|++ |..+|.+++.++.|.+.    +.    +     |..+.  ....||+||
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak--~~G~~~v~~~~~~~~rl~~a~~~----~~----i-----~~~~~--~~~g~Dvvi  205 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTK--AAGGSPPAVWETNPRRRDGATGY----EV----L-----DPEKD--PRRDYRAIY  205 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHH--HcCCceEEEeCCCHHHHHhhhhc----cc----c-----Chhhc--cCCCCCEEE
Confidence            45789999999999999999998  35776 67789998877666542    21    1     11110  123699998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -+...       ...++...+.|++||++++-.
T Consensus       206 d~~G~-------~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DASGD-------PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ECCCC-------HHHHHHHHHhhhcCcEEEEEe
Confidence            65442       235678888999999998754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.07  E-value=0.0025  Score=61.55  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=78.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEeccccccc-cCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDIMQVKE-KLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~~~~~~-~~~~fD~V~  207 (284)
                      .+-+|||.=||+ |+=++..|+......+|+.=|+|++|++..+++++..| ++. ++++.+.|+..+.. ....||+|=
T Consensus        49 ~~~~~lDalaas-GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAAS-GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TT-SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEeccccc-cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence            456999999986 78889998832334689999999999999999999999 677 79999999977653 234699998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      ++.+     .-...+++...+.++.||.|.+...+
T Consensus       127 lDPf-----GSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  127 LDPF-----GSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             E--S-----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             eCCC-----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence            8887     44567999999999999999997643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=97.06  E-value=0.0028  Score=59.63  Aligned_cols=102  Identities=16%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---ccccccc---
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQVKE---  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~~~~---  198 (284)
                      +....++.+|+..|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|. ..-+.....   |..+...   
T Consensus       161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~--~~G~~vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~~~~~~t  233 (349)
T TIGR03201       161 QAGLKKGDLVIVIGAGGVGGYMVQTAK--AMGAAVVAIDIDPEKLEMMKG----FGA-DLTLNPKDKSAREVKKLIKAFA  233 (349)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----hCC-ceEecCccccHHHHHHHHHhhc
Confidence            345678899999999999999999999  357899999999998877755    452 211221111   1111111   


Q ss_pred             cCCCcc----EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYD----CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD----~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|    +||.+..-       ...++...+.+++||++++-.
T Consensus       234 ~~~g~d~~~d~v~d~~g~-------~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       234 KARGLRSTGWKIFECSGS-------KPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             ccCCCCCCcCEEEECCCC-------hHHHHHHHHHHhcCCeEEEEC
Confidence            112354    67644331       235566778899999998754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.06  E-value=0.0096  Score=53.42  Aligned_cols=154  Identities=17%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      -+|.-.-+..+....+.++.+||.+|+.+ |.|.-.++.-..+++.|.+++.||...+---.++++-    .+|-=+-+|
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAas-GTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D  130 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAAS-GTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED  130 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccC-CCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence            34444444444445668999999999975 7888888875567899999999998766666666554    367778899


Q ss_pred             ccccccc----CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCccCCCc--------cC--
Q 036061          193 IMQVKEK----LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPVVEKH--------DL--  257 (284)
Q Consensus       193 ~~~~~~~----~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~v~~~--------dl--  257 (284)
                      +.. |..    ....|+||.+-.-   +.+-.=++.+....||+||.+++.- +...    .-..+|+        .|  
T Consensus       131 Ar~-P~~Y~~lv~~VDvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~si----D~t~~p~~vf~~e~~~L~~  202 (229)
T PF01269_consen  131 ARH-PEKYRMLVEMVDVIFQDVAQ---PDQARIAALNARHFLKPGGHLIISIKARSI----DSTADPEEVFAEEVKKLKE  202 (229)
T ss_dssp             TTS-GGGGTTTS--EEEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-----SSSSHHHHHHHHHHHHHC
T ss_pred             CCC-hHHhhcccccccEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEEEecCcc----cCcCCHHHHHHHHHHHHHH
Confidence            875 332    2468999976442   2444445667778999999888754 1111    1111221        23  


Q ss_pred             CCcEEEEEec--CCcceeeeEEEEe
Q 036061          258 LDFELLSVFH--PTNEVINSVVLVR  280 (284)
Q Consensus       258 ~gfe~~~~~h--P~~~v~nsvi~~r  280 (284)
                      .||+++...+  |..+ -..+|++|
T Consensus       203 ~~~~~~e~i~LePy~~-dH~~vv~~  226 (229)
T PF01269_consen  203 EGFKPLEQITLEPYER-DHAMVVGR  226 (229)
T ss_dssp             TTCEEEEEEE-TTTST-TEEEEEEE
T ss_pred             cCCChheEeccCCCCC-CcEEEEEE
Confidence            4799988865  6543 23345544

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0045  Score=61.02  Aligned_cols=126  Identities=15%  Similarity=0.261  Sum_probs=84.4

Q ss_pred             ccCCCcchhhhhhHHHHHHHHhcCCCCCC-EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC
Q 036061          104 NLFPYYGNYVKLANLEYRILDENGVVNPK-KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF  182 (284)
Q Consensus       104 ~~fpy~~ny~~l~~~E~~~l~~~~~~~~~-~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l  182 (284)
                      ..|-+|..|..+...-...+     .+-. +++.+|||.   +.+.+-.....--.||++|+|+-+++.....-++.   
T Consensus        26 ~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGN---S~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~---   94 (482)
T KOG2352|consen   26 DPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGN---SELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE---   94 (482)
T ss_pred             ChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCC---CHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---
Confidence            44566666666554433222     3444 999999985   34444331112245999999999999887765432   


Q ss_pred             CCCeEEEEeccccccccCCCccEEEe----cccc-c----CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          183 EKRMKFVTCDIMQVKEKLGEYDCIFL----AALV-G----MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       183 ~~~I~f~~~D~~~~~~~~~~fD~V~~----aa~v-~----~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+++...|......+..+||+|+.    +++. +    +....+.+.+.+++|+++|||+++.-+
T Consensus        95 ~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen   95 RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             CcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            35789999999988888888999973    3332 1    112345678899999999999866543

>PLN02740 Alcohol dehydrogenase-like

Probab=97.01  E-value=0.004  Score=59.46  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccccC--
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEKL--  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~~--  200 (284)
                      ....++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.|++    +|. ..-+....  .|..+.....  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGAR--ARGASKIIGVDINPEKFEKGKE----MGI-TDFINPKDSDKPVHERIREMTG  266 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HCCCCcEEEEcCChHHHHHHHH----cCC-cEEEecccccchHHHHHHHHhC
Confidence            34678899999999999999999999  4677 69999999998888865    562 21111111  0111111111  


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      +.+|+||-+...       ...++...+.+++| |++++-.
T Consensus       267 ~g~dvvid~~G~-------~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        267 GGVDYSFECAGN-------VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCCEEEECCCC-------hHHHHHHHHhhhcCCCEEEEEc
Confidence            259999865442       13566777788897 8877654

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.00  E-value=0.0034  Score=58.45  Aligned_cols=165  Identities=24%  Similarity=0.285  Sum_probs=114.2

Q ss_pred             CCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHH
Q 036061           96 TPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQI  175 (284)
Q Consensus        96 ~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~  175 (284)
                      +-.-+-....|.|-+-|-.+.-        .....|++||.||.|-+|+--+. ++ |..=..++-+|||...++.+++.
T Consensus        95 gviqlte~de~~Yqemi~~l~l--------~s~~npkkvlVVgggDggvlrev-ik-H~~ve~i~~~eiD~~Vie~sk~y  164 (337)
T KOG1562|consen   95 GVIQLTERDEFAYQEMIAHLAL--------CSHPNPKKVLVVGGGDGGVLREV-IK-HKSVENILLCEIDENVIESSKQY  164 (337)
T ss_pred             CeeeCCccccccceeeeecccc--------ccCCCCCeEEEEecCCccceeee-ec-cccccceeeehhhHHHHHHHHHH
Confidence            3333344467888666655543        13478999999999988875443 33 33445689999999999999999


Q ss_pred             HHhc--CCCCCCeEEEEeccccccccC--CCccEEEeccc--ccCChHH--HHHHHHHHHhhcCCCcEEEEEec------
Q 036061          176 VSSD--IEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAAL--VGMSKEE--KVKIIKHIRKYMKDGGVLLVRSA------  241 (284)
Q Consensus       176 ~~~~--G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~--v~~~~~~--k~~il~~l~~~l~pGg~lv~r~~------  241 (284)
                      ...+  |.-..+|.++-||+..+....  +.||+|++++.  +| +...  .+.+++.+.+.||+||++++...      
T Consensus       165 ~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~  243 (337)
T KOG1562|consen  165 LPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL  243 (337)
T ss_pred             hHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence            8753  434689999999998776655  47999998863  32 2222  36789999999999999988652      


Q ss_pred             ---Cccccc--------cCccCCCc----cCCCcEEEEEecCCcc
Q 036061          242 ---KGARAF--------LYPVVEKH----DLLDFELLSVFHPTNE  271 (284)
Q Consensus       242 ---~glr~~--------lYp~v~~~----dl~gfe~~~~~hP~~~  271 (284)
                         +-+|+|        .||..+..    ..-||..+....|.++
T Consensus       244 ~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~  288 (337)
T KOG1562|consen  244 DYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGK  288 (337)
T ss_pred             HHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCC
Confidence               223443        34433321    2358999987767665

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.98  E-value=0.0028  Score=59.75  Aligned_cols=100  Identities=19%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~  202 (284)
                      ...++++||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+.....|..+..   ..-..
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak--~~G~~~Vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~i~~~~~~~g  245 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAA--LAGASKIIAVDIDDRKLEWARE----FGA-THTVNSSGTDPVEAIRALTGGFG  245 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cCC-ceEEcCCCcCHHHHHHHHhCCCC
Confidence            4578899999999999999999999  4677 49999999998777754    562 111122112221111   11125


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-+..-       ...++...+.+++||++++-.
T Consensus       246 ~d~vid~~g~-------~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       246 ADVVIDAVGR-------PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCEEEECCCC-------HHHHHHHHHHhccCCEEEEEC
Confidence            8999854331       135667788999999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.98  E-value=0.006  Score=56.28  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=67.0

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC---------CCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE---------KRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~---------~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|.+......  ..|.+|+.+|+|++.++.+++.+.+.       +.+.         .++++ +.|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence            58999999987755333222  36889999999999999988764321       1011         24443 233322


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                         .....|+|+.+..  .+.+-|..+++++.+.++++.+|+..
T Consensus        81 ---a~~~aDlVieavp--e~~~~k~~~~~~l~~~~~~~~ii~sn  119 (287)
T PRK08293         81 ---AVKDADLVIEAVP--EDPEIKGDFYEELAKVAPEKTIFATN  119 (287)
T ss_pred             ---HhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence               2356799997643  23367899999999999888877543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.98  E-value=0.004  Score=57.44  Aligned_cols=100  Identities=18%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|.+.. .+++   .|.+|+.+|+|++.++.+++.+..       .|.+.        .++++. .|.. 
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-   76 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK-   76 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH-
Confidence            5899999998876532 2333   688999999999999998765322       11111        123332 2322 


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ....+.|+|+.+..  .+..-|..++.++.+.++||.+++..+
T Consensus        77 --~~~~~aD~Vi~avp--e~~~~k~~~~~~l~~~~~~~~il~~~t  117 (288)
T PRK09260         77 --AAVADADLVIEAVP--EKLELKKAVFETADAHAPAECYIATNT  117 (288)
T ss_pred             --HhhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence              23456899997643  244568899999999999998776544

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.89  E-value=0.0034  Score=57.49  Aligned_cols=86  Identities=21%  Similarity=0.351  Sum_probs=65.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .....|.|+|||-.     -||.  ..--.|+.+|+-            ..+     =+++.+|..++|.+.+..|++++
T Consensus       179 ~~~~vIaD~GCGEa-----kiA~--~~~~kV~SfDL~------------a~~-----~~V~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  179 PKNIVIADFGCGEA-----KIAS--SERHKVHSFDLV------------AVN-----ERVIACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             cCceEEEecccchh-----hhhh--ccccceeeeeee------------cCC-----CceeeccccCCcCccCcccEEEe
Confidence            45678999999953     2443  244679999975            222     36678999999988889999876


Q ss_pred             cc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +- +.|   .+-..++.+..|.|++||.+-+...
T Consensus       235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  235 CLSLMG---TNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             eHhhhc---ccHHHHHHHHHHHhccCceEEEEeh
Confidence            53 434   6788999999999999999988653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.87  E-value=0.0068  Score=63.35  Aligned_cols=100  Identities=19%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccc
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIM  194 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~  194 (284)
                      -++|..||+|.+|-. |.++|.   .|..|+-+|+++++++.+.+.+++.       |.+.        .+|++. .|. 
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-  409 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-  409 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-
Confidence            368999999988765 344444   7999999999999999988776532       2111        345543 222 


Q ss_pred             cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ..+++.|+|+-+.  ..+.+-|.+++.++-++++|+++|...+
T Consensus       410 ---~~~~~aDlViEAv--~E~l~~K~~vf~~l~~~~~~~~ilasNT  450 (737)
T TIGR02441       410 ---SGFKNADMVIEAV--FEDLSLKHKVIKEVEAVVPPHCIIASNT  450 (737)
T ss_pred             ---HHhccCCeehhhc--cccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence               2356789998663  3456889999999999999999988765

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.85  E-value=0.0088  Score=55.30  Aligned_cols=98  Identities=24%  Similarity=0.280  Sum_probs=65.7

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEeccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIEFE--------KRMKFVTCDIMQV  196 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~l~--------~~I~f~~~D~~~~  196 (284)
                      ++|.+||+|.+|..-....  ...|.+|+.+|.+++.++.+++.++       +.|.+.        .++++. .|.   
T Consensus         5 ~~V~vIG~G~mG~~iA~~l--~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---   78 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLA--AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL---   78 (295)
T ss_pred             CEEEEECCCHHHHHHHHHH--HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH---
Confidence            6899999998875532221  1368999999999999987766543       223111        123332 222   


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                       ......|+|+.+..  .+.+.|..++.++.+.++|+.+|+.
T Consensus        79 -~~~~~aD~Vieav~--e~~~~k~~v~~~l~~~~~~~~il~s  117 (295)
T PLN02545         79 -EELRDADFIIEAIV--ESEDLKKKLFSELDRICKPSAILAS  117 (295)
T ss_pred             -HHhCCCCEEEEcCc--cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             12356899997643  3458899999999999999987764

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.84  E-value=0.006  Score=57.90  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++||..|+|++|..++.+|+  ..|++|+++|.+++...   +.++++|.  +. .+...+...+....+.+|+||
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~vi~~~~~~~~~~---~~~~~~Ga--~~-vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGK--AFGLKVTVISSSSNKED---EAINRLGA--DS-FLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCcchhh---hHHHhCCC--cE-EEcCCCHHHHHhhcCCCCEEE
Confidence            357899999999999999999999  46889999988876432   22335662  11 111111111111123589998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -+...       ...+++..+.+++||+++.-.
T Consensus       253 d~~g~-------~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        253 DTVSA-------VHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             ECCCC-------HHHHHHHHHHhcCCcEEEEeC
Confidence            54331       125677888999999988654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.77  E-value=0.007  Score=56.64  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f  203 (284)
                      ...++++||..|+|++|..++.+|+  ..|++ |+++|.+++..+.+++    +|. ..-+.....+..++..  .-..+
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAV--ALGAKSVTAIDINSEKLALAKS----LGA-MQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEECCCHHHHHHHHH----cCC-ceEecCcccCHHHHHHHhcCCCC
Confidence            4567899999999999999999999  46786 7899999998777644    452 1111111111111111  11257


Q ss_pred             c-EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 D-CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D-~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      | +||-+...       ...+....+.|++||.+++-.
T Consensus       230 d~~v~d~~G~-------~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        230 DQLILETAGV-------PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CeEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence            8 66543331       236778889999999988764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.74  E-value=0.0095  Score=58.40  Aligned_cols=109  Identities=17%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             cchhhhhhHHHHHHHHhc-CC-CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061          109 YGNYVKLANLEYRILDEN-GV-VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM  186 (284)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~-~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I  186 (284)
                      |+|-....+--+..+.+. .. ..+++|+.+|+|++|......++  ..|++|+.+|+|+.....|..    .|.     
T Consensus       188 ~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr--~~Ga~ViV~d~dp~ra~~A~~----~G~-----  256 (425)
T PRK05476        188 FDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLR--GLGARVIVTEVDPICALQAAM----DGF-----  256 (425)
T ss_pred             ccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCchhhHHHHh----cCC-----
Confidence            344444444445554444 32 47899999999999988887777  578999999999976544432    352     


Q ss_pred             EEEEeccccccccCCCccEEEecccccCChHHHHHHHH-HHHhhcCCCcEEEEEe
Q 036061          187 KFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIK-HIRKYMKDGGVLLVRS  240 (284)
Q Consensus       187 ~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~-~l~~~l~pGg~lv~r~  240 (284)
                      ++  .+..+   ....+|+|+.+..      .+ .++. ...+.||+|++++.-.
T Consensus       257 ~v--~~l~e---al~~aDVVI~aTG------~~-~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        257 RV--MTMEE---AAELGDIFVTATG------NK-DVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             Ee--cCHHH---HHhCCCEEEECCC------CH-HHHHHHHHhcCCCCCEEEEcC
Confidence            21  12222   2346899986532      22 3554 6788999999887654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=96.73  E-value=0.014  Score=55.11  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|+..|+|++|..++.+|+  ..|++|+.++.+++..+.+.+   ++|.  +. .+...+...+......+|+||-
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak--~~G~~vi~~~~~~~~~~~~~~---~~Ga--~~-~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAK--AMGHHVTVISSSDKKREEALE---HLGA--DD-YLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHH---hcCC--cE-EecCCChHHHHHhcCCCcEEEE
Confidence            57899999999999999999999  468889999988876544433   5673  21 1111111111111235899985


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...       ...++...+.+++||+++.-.
T Consensus       251 ~~g~-------~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        251 TVPV-------FHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CCCc-------hHHHHHHHHHhccCCEEEEEC
Confidence            4331       135667788999999988754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.73  E-value=0.0044  Score=62.02  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEec
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCD  192 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D  192 (284)
                      .+-++|..||+|.+|.. |..+++   .|..|+.+|+++++++.+++.+++       .|.+.        .++++. .|
T Consensus         3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~   78 (503)
T TIGR02279         3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD   78 (503)
T ss_pred             CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence            34578999999988744 233444   789999999999999988664432       23111        234442 23


Q ss_pred             cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .    ....+.|+||.+.  ..+.+-|..++..+.+.++|+.+|...+
T Consensus        79 ~----~~l~~aDlVIEav--~E~~~vK~~vf~~l~~~~~~~~IlasnT  120 (503)
T TIGR02279        79 L----HALADAGLVIEAI--VENLEVKKALFAQLEELCPADTIIASNT  120 (503)
T ss_pred             H----HHhCCCCEEEEcC--cCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence            2    2345789999763  2345789999999999988888776544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.71  E-value=0.01  Score=56.11  Aligned_cols=100  Identities=13%  Similarity=0.028  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccccc--CCC
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEK--LGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~--~~~  202 (284)
                      ...++++||..|+ |++|..++.+|+  ..|++|++++.+++..+.+++   .+|. ..-+..... |..+....  .+.
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk--~~G~~Vi~~~~~~~k~~~~~~---~lGa-~~vi~~~~~~~~~~~i~~~~~~g  228 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAK--LHGCYVVGSAGSSQKVDLLKN---KLGF-DEAFNYKEEPDLDAALKRYFPEG  228 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHH---hcCC-CEEEECCCcccHHHHHHHHCCCC
Confidence            4578899999998 899999999999  468999999999887666653   4562 221222111 22111111  136


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||-+..     .   ..+....+.+++||++++-.
T Consensus       229 vD~v~d~vG-----~---~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        229 IDIYFDNVG-----G---DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             cEEEEECCC-----H---HHHHHHHHHhccCCEEEEEC
Confidence            999984322     1   36678889999999998643

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.70  E-value=0.011  Score=61.41  Aligned_cols=101  Identities=14%  Similarity=0.058  Sum_probs=72.8

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccc
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIM  194 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~  194 (284)
                      -++|..||+|.+|-.- .++|.  ..|..|+.+|+|+++++.+++.+++.       |.+.        ++|++. .|  
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~--  383 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD--  383 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence            4789999999877542 22341  37999999999999999987766431       2111        345554 22  


Q ss_pred             cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       + ....+.|+|+-+.  ..+.+-|.+++.++-++++|+.+|...+
T Consensus       384 -~-~~~~~aDlViEav--~E~~~~K~~v~~~le~~~~~~~ilasnT  425 (708)
T PRK11154        384 -Y-RGFKHADVVIEAV--FEDLALKQQMVAEVEQNCAPHTIFASNT  425 (708)
T ss_pred             -h-HHhccCCEEeecc--cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             1 2356789999763  3456889999999999999999987765

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.68  E-value=0.016  Score=55.00  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=66.4

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ecc----ccccc
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDI----MQVKE  198 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~----~~~~~  198 (284)
                      ....++++||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.|++    +|. ..-+....  .+.    .++..
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak--~~G~~~Vi~~~~~~~~~~~a~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGAR--MAKASRIIAIDINPAKFELAKK----LGA-TDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----hCC-CeEEcccccchhHHHHHHHHhC
Confidence            34578899999999999999999999  4677 79999999998887755    452 21122111  111    11111


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                        +.+|+|+-+...       ...+....+.+++| |+++.-.
T Consensus       254 --~g~d~vid~~G~-------~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       254 --GGVDYSFECIGN-------VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             --CCCCEEEECCCC-------HHHHHHHHHHhhcCCCeEEEEe
Confidence              268999865331       23566777888886 8877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.68  E-value=0.013  Score=54.45  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-cCCC-C--------CCeEEEEeccccccccC
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-DIEF-E--------KRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~G~l-~--------~~I~f~~~D~~~~~~~~  200 (284)
                      -++|.+||+|.+|.+-.....  ..|.+|+.+|.+++.++.+++.+.+ .|.. .        .++++ +.|..   ...
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---~~~   77 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA---AAV   77 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH---HHh
Confidence            368999999988765332222  3688999999999999988875332 1210 0        12332 22221   223


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ++.|+||.+..-  +...|..++..+.+.++++.+++.
T Consensus        78 ~~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~s  113 (311)
T PRK06130         78 SGADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFAT  113 (311)
T ss_pred             ccCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEEE
Confidence            568999986431  224588899999988777765543

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.68  E-value=0.012  Score=54.74  Aligned_cols=101  Identities=19%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++++||..|+|++|..++.+|+  ..|++|+.++.+++..+.+++    +| ...-+.....|..+....++.+|+
T Consensus       159 ~~~~~~~~vlV~g~g~iG~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d~  231 (333)
T cd08296         159 SGAKPGDLVAVQGIGGLGHLAVQYAA--KMGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAKL  231 (333)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCCE
Confidence            35577899999999999999999999  468899999999887776644    55 211111111122111122346899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+-....       ...++...+.++++|.++.-.
T Consensus       232 vi~~~g~-------~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         232 ILATAPN-------AKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             EEECCCc-------hHHHHHHHHHcccCCEEEEEe
Confidence            8843211       236778899999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.67  E-value=0.0096  Score=57.02  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++|+..|+|++|..++.+|+  ..|++|+++|.+++. .+.+    +++|. . . .+...+...+....+.+|+|+
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~Vi~~~~~~~~~~~~a----~~lGa-~-~-~i~~~~~~~v~~~~~~~D~vi  247 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGK--AFGLRVTVISRSSEKEREAI----DRLGA-D-S-FLVTTDSQKMKEAVGTMDFII  247 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHH--HcCCeEEEEeCChHHhHHHH----HhCCC-c-E-EEcCcCHHHHHHhhCCCcEEE
Confidence            47899999999999999999999  468899999988654 3333    45662 1 1 111111111111123589998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -+...       ...+....+.+++||.++.-.
T Consensus       248 d~~G~-------~~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        248 DTVSA-------EHALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             ECCCc-------HHHHHHHHHhhcCCCEEEEEc
Confidence            65432       135677788999999998754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.66  E-value=0.011  Score=57.51  Aligned_cols=89  Identities=17%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|+.+|+|++|......++  ..|++|+.+|+||.....|+    ..|.     ++.  +..+   .....|+|+.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G~-----~v~--~lee---al~~aDVVIt  256 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDGF-----RVM--TMEE---AAKIGDIFIT  256 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcCC-----EeC--CHHH---HHhcCCEEEE
Confidence            67899999999999999888887  57899999999997543333    3452     221  2222   2346799886


Q ss_pred             cccccCChHHHHHHHH-HHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIK-HIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~-~l~~~l~pGg~lv~r~  240 (284)
                      +..      . ..++. .....||+|++++.-.
T Consensus       257 aTG------~-~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       257 ATG------N-KDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             CCC------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence            432      2 33444 4778999999887654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.65  E-value=0.0047  Score=61.86  Aligned_cols=101  Identities=18%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecc
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDI  193 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~  193 (284)
                      +-++|..||+|.+|.. |..+|+   .|..|+.+|+++++++.+.+.+++       .|.+        .+++++. .|.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   81 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL   81 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence            4478999999988753 334454   799999999999999998666542       2211        1235543 232


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .    +..+.|+||.+.  ..+.+-|..++..+.+.++|+.+|...+
T Consensus        82 ~----~~~~aDlViEav--~E~~~vK~~vf~~l~~~~~~~ailasnt  122 (507)
T PRK08268         82 A----DLADCDLVVEAI--VERLDVKQALFAQLEAIVSPDCILATNT  122 (507)
T ss_pred             H----HhCCCCEEEEcC--cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            2    345789999763  3455789999999999989988886543

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0028  Score=58.59  Aligned_cols=96  Identities=15%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.-++++|||-+-++    -  ..|.+.+.+.|++..-+..|++   ..+     .....+|+..++.....||..+.
T Consensus        44 ~~gsv~~d~gCGngky~----~--~~p~~~~ig~D~c~~l~~~ak~---~~~-----~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYL----G--VNPLCLIIGCDLCTGLLGGAKR---SGG-----DNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             CCcceeeecccCCcccC----c--CCCcceeeecchhhhhcccccc---CCC-----ceeehhhhhcCCCCCCccccchh
Confidence            45889999999964332    1  2478899999999988887776   222     16677999998887778999987


Q ss_pred             cccc-cC-ChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALV-GM-SKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .+.+ ++ +...+.++++++.+.++|||..++
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            6665 33 667789999999999999997554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.63  E-value=0.013  Score=54.43  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -++|..||+|.+|.+.....+  ..|  .+|+++|.+++..+.+++    .|. ..  . ...+..   ....+.|+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~--~~g~~~~V~~~dr~~~~~~~a~~----~g~-~~--~-~~~~~~---~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIR--RLGLAGEIVGADRSAETRARARE----LGL-GD--R-VTTSAA---EAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHH--hcCCCcEEEEEECCHHHHHHHHh----CCC-Cc--e-ecCCHH---HHhcCCCEEEE
Confidence            368999999988765433222  134  489999999988776653    452 11  1 122221   12356899998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.-.    .....+++.+...+++|+.++.
T Consensus        73 avp~----~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         73 CVPV----GASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             CCCH----HHHHHHHHHHHhhCCCCCEEEe
Confidence            7654    4556788888888999986654

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.63  E-value=0.0067  Score=54.84  Aligned_cols=82  Identities=12%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             CCCCC--CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH---HHHHhcCCC----CCCeEEEEecccccc
Q 036061          127 GVVNP--KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR---QIVSSDIEF----EKRMKFVTCDIMQVK  197 (284)
Q Consensus       127 ~~~~~--~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar---~~~~~~G~l----~~~I~f~~~D~~~~~  197 (284)
                      +.+++  .+|||.=+| +|-.|+.+|.   .|++||+++.||-...+-+   +.+......    ..||+++++|..+..
T Consensus        70 Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L  145 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL  145 (234)
T ss_dssp             T-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred             CCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence            44444  399999999 8999999997   5899999999997765544   333333311    258999999998876


Q ss_pred             cc-CCCccEEEecccc
Q 036061          198 EK-LGEYDCIFLAALV  212 (284)
Q Consensus       198 ~~-~~~fD~V~~aa~v  212 (284)
                      .. ...||+|+++.+.
T Consensus       146 ~~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  146 RQPDNSFDVVYFDPMF  161 (234)
T ss_dssp             CCHSS--SEEEE--S-
T ss_pred             hhcCCCCCEEEECCCC
Confidence            52 3579999999865

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.62  E-value=0.01  Score=55.43  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=62.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|+.||.|..|..++..++  ..|++|+.+|.+++..+.++    ..|.     ++.  +..++.....++|+||.
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~--~~Ga~V~v~~r~~~~~~~~~----~~G~-----~~~--~~~~l~~~l~~aDiVI~  216 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLK--ALGANVTVGARKSAHLARIT----EMGL-----SPF--HLSELAEEVGKIDIIFN  216 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH----HcCC-----eee--cHHHHHHHhCCCCEEEE
Confidence            36899999999998888888777  46899999999988655544    4552     222  11222333467999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.-.       .-+-+...+.|+||++++--
T Consensus       217 t~p~-------~~i~~~~l~~~~~g~vIIDl  240 (296)
T PRK08306        217 TIPA-------LVLTKEVLSKMPPEALIIDL  240 (296)
T ss_pred             CCCh-------hhhhHHHHHcCCCCcEEEEE
Confidence            5321       11335667789999887743

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.62  E-value=0.00076  Score=57.51  Aligned_cols=103  Identities=17%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE------------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT------------------  190 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~------------------  190 (284)
                      .+|.+|+.+|.|..|..|..+++  ..|++|+.+|..++..+..+.+..      ..+....                  
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~--~lGa~v~~~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAK--GLGAEVVVPDERPERLRQLESLGA------YFIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHH--HTT-EEEEEESSHHHHHHHHHTTT------EESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCeEEEEECCCHHHHHHHHHHh--HCCCEEEeccCCHHHHHhhhcccC------ceEEEcccccccccccchhhhhHHH
Confidence            57899999999999999999998  479999999999987776554221      1222210                  


Q ss_pred             -eccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          191 -CDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       191 -~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ..-..+......+|+|+.+.+......++ =+-++..+.|+||.+++=-+
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~-lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAPR-LVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEETT
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCCE-EEEhHHhhccCCCceEEEEE
Confidence             00001112234689999877762222333 36677788899888776544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.58  E-value=0.016  Score=60.36  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|-.- .++|.   .|..|+-+|+++++++.+++.+++       .|.+        ..+|++. .|.  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  387 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY--  387 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence            689999999887653 23444   799999999999999988776532       1211        1355543 232  


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...++.|+|+-+.  ..+.+-|.+++.++-++++|+.+|...+
T Consensus       388 --~~~~~aDlViEav--~E~l~~K~~vf~~l~~~~~~~~ilasNT  428 (715)
T PRK11730        388 --AGFERVDVVVEAV--VENPKVKAAVLAEVEQKVREDTILASNT  428 (715)
T ss_pred             --HHhcCCCEEEecc--cCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence              2346789999763  3456899999999999999999887765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.58  E-value=0.013  Score=61.02  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             CCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEecc
Q 036061          130 NPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEF--------EKRMKFVTCDI  193 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l--------~~~I~f~~~D~  193 (284)
                      +-++|..||+|.+|-.-. ++|.   .|..|+-+|+|+++++.+++.+++.       |.+        -.+|++. .|.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~  387 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSAS---KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY  387 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence            346899999998875432 3343   7999999999999999988766421       211        1244443 121


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ....+.|+|+-+..  .+.+-|.+++.++-++++|+++|...+
T Consensus       388 ----~~~~~aDlViEav~--E~l~~K~~vf~~l~~~~~~~~ilasnT  428 (714)
T TIGR02437       388 ----AGFDNVDIVVEAVV--ENPKVKAAVLAEVEQHVREDAILASNT  428 (714)
T ss_pred             ----HHhcCCCEEEEcCc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence                23567999997643  456889999999999999999987766

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.53  E-value=0.011  Score=56.57  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-ccc-ccc--cCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-IMQ-VKE--KLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-~~~-~~~--~~~  201 (284)
                      ...++.+||.+|+|++|..++.+|++  .|. +|+++|.+++..+.+++..   + . .-+.+...+ ..+ +..  ...
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCCC
Confidence            35678999999999999999999993  565 6999999999988888742   3 1 112222221 111 111  112


Q ss_pred             CccEEEeccccc--------------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVG--------------MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~--------------~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+|+|+-+..-.              ....++...++.+.+.|+|||.++.-..
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            599998643200              0112345688999999999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.52  E-value=0.016  Score=53.30  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-c-cccCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-V-KEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~-~~~~~~fD~  205 (284)
                      ..++.+||..|+|+.|..++.+|+  ..|.+|++++.+++..+.+++    .| ...-+.....+..+ + ....+.+|+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~--~~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAK--AMGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCceE
Confidence            467889999999988999999998  468899999999988777754    45 21111111111100 0 112246999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+-+...       ...++++.+.|++||.++.-.
T Consensus       236 vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVGT-------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence            8854321       246788899999999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.51  E-value=0.026  Score=54.45  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhc----CCCCCCeEEEE----eccccc
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSD----IEFEKRMKFVT----CDIMQV  196 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~----G~l~~~I~f~~----~D~~~~  196 (284)
                      ...++.+|+.+| +|++|..++.+|++...|+ +|+++|.+++..+.|+++....    |.   ...++.    .|..+.
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga---~~~~i~~~~~~~~~~~  248 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI---ELLYVNPATIDDLHAT  248 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc---eEEEECCCccccHHHH
Confidence            456788999997 7999999999998422233 7999999999999998853221    21   112221    111111


Q ss_pred             c---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          197 K---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       197 ~---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .   .....||+|+.....       ...+....+.++++|.+++-
T Consensus       249 v~~~t~g~g~D~vid~~g~-------~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         249 LMELTGGQGFDDVFVFVPV-------PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHhCCCCCCEEEEcCCC-------HHHHHHHHHHhccCCeEEEE
Confidence            1   112359999865332       24667788899988876654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.51  E-value=0.02  Score=54.24  Aligned_cols=101  Identities=22%  Similarity=0.183  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccccc--cC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVKE--KL  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~~--~~  200 (284)
                      ....++++||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+.....  |..+...  ..
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak--~~G~~~vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAK--AAGASRIIGIDINPDKFELAKK----FGA-TDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-CEEEcccccchHHHHHHHHHhC
Confidence            34578999999999999999999999  4678 79999999998877754    562 211111111  1111110  01


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      +.+|+|+-+..-       ...+....+.+++| |++++-.
T Consensus       255 ~g~d~vid~~g~-------~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         255 GGVDYTFECIGN-------VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             CCCcEEEECCCC-------hHHHHHHHHhhccCCCeEEEEc
Confidence            269999854331       23567778888887 8887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.50  E-value=0.0036  Score=56.54  Aligned_cols=103  Identities=9%  Similarity=-0.006  Sum_probs=73.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +.-..+++||||- |.-+-.|-.  ..=.+++-.|.|-+|++.++.   ... -+-.+...++|-..++...+++|+|+.
T Consensus        71 k~fp~a~diGcs~-G~v~rhl~~--e~vekli~~DtS~~M~~s~~~---~qd-p~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   71 KSFPTAFDIGCSL-GAVKRHLRG--EGVEKLIMMDTSYDMIKSCRD---AQD-PSIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             hhCcceeecccch-hhhhHHHHh--cchhheeeeecchHHHHHhhc---cCC-CceEEEEEecchhcccccccchhhhhh
Confidence            3456899999984 544444433  123578999999999999887   322 234678889997777776678999986


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +-..+|. .+-...+.++...+||+|.++-.
T Consensus       144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence            5444553 33345678899999999999863

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.49  E-value=0.013  Score=51.63  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-c-cccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-V-KEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~-~~~~~~fD~V  206 (284)
                      .++.+||..|+|++|..++.+++  ..|.+|++++.+++..+.+++    .|. ..-+.....+... + ....+.+|+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAK--AAGARVIVTDRSDEKLELAKE----LGA-DHVIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----hCC-ceeccCCcCCHHHHHHHhcCCCCCEE
Confidence            67899999999988888888888  467999999999988776654    341 1111111111100 0 1123469999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+...    .   ..+..+.+.|+++|.++.-..
T Consensus       206 i~~~~~----~---~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         206 IDAVGG----P---ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EECCCC----H---HHHHHHHHhcccCCEEEEEcc
Confidence            865432    1   456788889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=96.46  E-value=0.028  Score=54.23  Aligned_cols=106  Identities=19%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---cccc-cc--
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQ-VK--  197 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~-~~--  197 (284)
                      +....++++||..|+|++|..++.+|+  ..|++ |+..|.+++..+.|++    +|.  +  .+...   +..+ +.  
T Consensus       180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk--~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~--~v~~~~~~~~~~~v~~~  249 (393)
T TIGR02819       180 TAGVGPGSTVYIAGAGPVGLAAAASAQ--LLGAAVVIVGDLNPARLAQARS----FGC--E--TVDLSKDATLPEQIEQI  249 (393)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCceEEEeCCCHHHHHHHHH----cCC--e--EEecCCcccHHHHHHHH
Confidence            345678899999999999999999998  35666 5667899888877766    462  2  22211   1111 11  


Q ss_pred             ccCCCccEEEecccccC-------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .....+|+|+-+.....       ...+....+++..+.+++||++++-.
T Consensus       250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            11235999986544210       01122357888899999999998854

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.46  E-value=0.021  Score=52.81  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccc--cCCC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKE--KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~--~~~~  202 (284)
                      ...++.+||..| +|++|..++.+|+  ..|++|++++.+++..+.+++    +|. ..-+..... +..+...  ..+.
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk--~~G~~Vi~~~~s~~~~~~~~~----lGa-~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAK--LKGCKVVGAAGSDEKVAYLKK----LGF-DVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-CEEEeccccccHHHHHHHhCCCC
Confidence            457889999999 5899999999999  478999999999887766644    562 111111111 1111111  1135


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||-+..     .   ..++...+.+++||+++.-.
T Consensus       208 vdvv~d~~G-----~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       208 YDCYFDNVG-----G---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             eEEEEECCC-----H---HHHHHHHHHhCcCcEEEEec
Confidence            999984322     1   24578889999999998654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02827 Alcohol dehydrogenase-like

Probab=96.45  E-value=0.025  Score=54.03  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ecccccccc--CC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEK--LG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~--~~  201 (284)
                      ...++++||..|+|++|..++.+|+  ..|+ .|+++|.+++..+.|++    +| ...-+....  .+..+....  .+
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak--~~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~~  262 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAK--LRGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTGG  262 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhCC
Confidence            4578899999999999999999999  3576 59999999988777654    56 221121111  111111111  12


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      .+|+|+-+...       ...+....+.+++| |++++-.
T Consensus       263 g~d~vid~~G~-------~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        263 GADYSFECVGD-------TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCEEEECCCC-------hHHHHHHHHhhccCCCEEEEEC
Confidence            69999865432       12456777888998 9987643

>PHA01634 hypothetical protein

Probab=96.41  E-value=0.019  Score=47.44  Aligned_cols=73  Identities=8%  Similarity=0.129  Sum_probs=54.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      -.+++|++||++ .|-||++++-   .|+ .|++++.+|...+..+++++-.....+.+--  +   +++...+.||+..
T Consensus        27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~--~---eW~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK--G---EWNGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhheeeeceeec--c---cccccCCCcceEE
Confidence            578999999998 7999999986   565 5999999999999999988765432221111  1   3555567899877


Q ss_pred             ecc
Q 036061          208 LAA  210 (284)
Q Consensus       208 ~aa  210 (284)
                      ++.
T Consensus        98 iDC  100 (156)
T PHA01634         98 MDC  100 (156)
T ss_pred             EEc
Confidence            664

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=96.40  E-value=0.018  Score=53.83  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc--cC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE--KL  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~--~~  200 (284)
                      .....++++||..|+|++|..++.+|+  ..|. .|+++|.+++..+.+++    +| ...-+.....+..+ +..  .-
T Consensus       161 ~~~~~~g~~vlI~g~g~iG~~~~~lak--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~  233 (351)
T cd08285         161 LANIKLGDTVAVFGIGPVGLMAVAGAR--LRGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGG  233 (351)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCC
Confidence            345678899999999999999999999  3567 59999999988777764    56 22112221112111 111  11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+|+-+..     .  ...+....+.|+++|+++.-.
T Consensus       234 ~~~d~vld~~g-----~--~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         234 KGVDAVIIAGG-----G--QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCCcEEEECCC-----C--HHHHHHHHHHhhcCCEEEEec
Confidence            35999885433     1  246788899999999988643

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.38  E-value=0.018  Score=53.94  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLG  201 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~  201 (284)
                      ....++.+||..|+|++|..++.+|+  ..|+ +|+.++.+++..+.+++    +|. ..-+.....|..+..   ...+
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~--~~G~~~v~~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALK--AAGASKIIVSEPSEARRELAEE----LGA-TIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----hCC-CEEECCCccCHHHHHHHHhCCC
Confidence            34578899999999999999999999  4688 89999999998877755    352 211122222221111   1113


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+|+|+-+..-       ...++...+.|++||.++.-..
T Consensus       241 ~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGV-------QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCC-------HHHHHHHHHhccCCCEEEEEcc
Confidence            49999865431       1356788899999999887543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.36  E-value=0.023  Score=52.28  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|..||+|.+|.+-.. |++   .|.+|+++|.+++..+.+.+    .|.    +.....+.    ....+.|+||++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~---~g~~V~~~d~~~~~~~~a~~----~g~----~~~~~~~~----~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRS---LGHTVYGVSRRESTCERAIE----RGL----VDEASTDL----SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----CCC----cccccCCH----hHhcCCCEEEEcC
Confidence            37999999988765322 333   57899999999998877754    342    11111121    1235689999875


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      -.    ..-.++++.+...++++.++.
T Consensus        66 p~----~~~~~~~~~l~~~l~~~~ii~   88 (279)
T PRK07417         66 PI----GLLLPPSEQLIPALPPEAIVT   88 (279)
T ss_pred             CH----HHHHHHHHHHHHhCCCCcEEE
Confidence            53    445668889998888886553

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.36  E-value=0.036  Score=52.43  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccccc--cC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVKE--KL  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~~--~~  200 (284)
                      ....++++||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+.....  +..+...  ..
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak--~~G~~~vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~  255 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGAR--IRGASRIIGVDLNPSKFEQAKK----FGV-TEFVNPKDHDKPVQEVIAEMTG  255 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cCC-ceEEcccccchhHHHHHHHHhC
Confidence            34578999999999999999999999  4677 79999999998777654    562 211211110  1111000  11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      +.+|+|+-+...       ...+....+.+++| |++++-.
T Consensus       256 ~~~d~vid~~G~-------~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         256 GGVDYSFECTGN-------IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CCCCEEEECCCC-------hHHHHHHHHHhhcCCCEEEEEC
Confidence            258998854321       23556677888996 8887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.35  E-value=0.021  Score=54.05  Aligned_cols=99  Identities=21%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccc-c--cccC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQ-V--KEKL  200 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~-~--~~~~  200 (284)
                      ...++.+||..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+....-  +..+ +  ... 
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~--~~G~~~Vi~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~~~~~~~~~-  252 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAK--IAGASRIIGVDINEDKFEKAKE----FGA-TDFINPKDSDKPVSEVIREMTG-  252 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-CcEeccccccchHHHHHHHHhC-
Confidence            4578899999999999999999999  3577 79999999988777754    452 111111110  0111 1  111 


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      +.+|+|+-+..-       ...+....+.+++| |.+++-.
T Consensus       253 ~g~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         253 GGVDYSFECTGN-------ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             CCCCEEEECCCC-------hHHHHHHHHhcccCCCEEEEEc
Confidence            369999854331       23567788899886 8887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.011  Score=56.44  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---C
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---E  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~  202 (284)
                      ..-.|++|||+|.||+  |.++-+....|.- .++-++-||..-+..-.+.+..+ . .......+|++.-..+++   .
T Consensus       110 ~dfapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~  185 (484)
T COG5459         110 PDFAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADL  185 (484)
T ss_pred             CCcCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCccce
Confidence            3467889999999973  4454333234443 47778889888888887777665 2 334555666653222332   4


Q ss_pred             ccEEEecc-cccC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAA-LVGM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa-~v~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||++++.. ++++ ...+-...+++++..++|||.|++-.
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            78777544 4443 22233558999999999999988865

>PLN02494 adenosylhomocysteinase

Probab=96.33  E-value=0.032  Score=55.35  Aligned_cols=146  Identities=12%  Similarity=0.039  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhhHhhhHHHHHHh---cCC------CCcccccccCCCcchhhhhhHHHHHHHHhcC--CCCCCEEEE
Q 036061           68 QEMRESLIVLCGRAEGLLELEFATFF---AKT------PQPLNNLNLFPYYGNYVKLANLEYRILDENG--VVNPKKVAF  136 (284)
Q Consensus        68 ~~l~~~l~~l~~~~e~~lE~~~a~~l---~~~------~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~--~~~~~~VL~  136 (284)
                      .++.+.++=.+.+-+.-.-++++..-   +..      +.+.+++     |+|-...-+--++.+.+..  ...+++|+.
T Consensus       185 ~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVvV  259 (477)
T PLN02494        185 HKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAVI  259 (477)
T ss_pred             hHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEEE
Confidence            44555555555555444444444221   111      3344432     3333332222234444442  257899999


Q ss_pred             eccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh
Q 036061          137 VGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK  216 (284)
Q Consensus       137 IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~  216 (284)
                      +|+|++|......++  ..|++|+.+|+|+.....|.    ..|.     .+.  +..+   .+...|+|+.+..     
T Consensus       260 iGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~----~~G~-----~vv--~leE---al~~ADVVI~tTG-----  318 (477)
T PLN02494        260 CGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQAL----MEGY-----QVL--TLED---VVSEADIFVTTTG-----  318 (477)
T ss_pred             ECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHH----hcCC-----eec--cHHH---HHhhCCEEEECCC-----
Confidence            999999998888887  46899999999987644443    2352     111  2222   2346899986432     


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          217 EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       217 ~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .+.-+.....+.||+||+|+.-.
T Consensus       319 -t~~vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        319 -NKDIIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             -CccchHHHHHhcCCCCCEEEEcC
Confidence             23334477778999999987754

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.26  E-value=0.029  Score=56.02  Aligned_cols=102  Identities=17%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC--C--CCCeEEEEecccccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIE--F--EKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~--l--~~~I~f~~~D~~~~~~~  199 (284)
                      ++|.+||+|.+|.. |..+++   .|..|+.+|++++..+...+..+       .+..  +  ..++++. .|.   ...
T Consensus         5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~ea   77 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AEA   77 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HHH
Confidence            58999999987754 223343   68899999999999876543221       1110  0  0124432 222   122


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ..+.|+|+.+..  .+.+-|..++..+...++|+.+ +..+..|
T Consensus        78 ~~~aD~Vieavp--e~~~vk~~l~~~l~~~~~~~~i-I~SsTsg  118 (495)
T PRK07531         78 VAGADWIQESVP--ERLDLKRRVLAEIDAAARPDAL-IGSSTSG  118 (495)
T ss_pred             hcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcE-EEEcCCC
Confidence            356899997532  2335588899999888887764 4444444

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.23  E-value=0.045  Score=49.10  Aligned_cols=97  Identities=19%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ....++.+||..|+|++|..++.+|++  .|.+ |++++.+++..+.+++    .| ..+.+.....+   . .....+|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~----~g-~~~~~~~~~~~---~-~~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEA----LG-PADPVAADTAD---E-IGGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHH----cC-CCccccccchh---h-hcCCCCC
Confidence            345788999999999999999999994  5677 9999999998776665    34 11222111111   1 1224699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+.....       ...+....+.|+++|.++.-.
T Consensus       162 ~vl~~~~~-------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASGS-------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence            99854332       135678888999999988643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.22  E-value=0.034  Score=52.86  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----ccccccccC--
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEKL--  200 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~~--  200 (284)
                      ...++.+|..+|+|..|++++.-|+ ...-.++.+||++++..++|++    +|.    ..++..    |+.+...++  
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~----fGA----T~~vn~~~~~~vv~~i~~~T~  252 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKK----FGA----THFVNPKEVDDVVEAIVELTD  252 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHh----cCC----ceeecchhhhhHHHHHHHhcC
Confidence            3588999999999999999999998 4455689999999999999987    442    233322    333222222  


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.-|.+|-...-       .+++++......++|..++--
T Consensus       253 gG~d~~~e~~G~-------~~~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         253 GGADYAFECVGN-------VEVMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             CCCCEEEEccCC-------HHHHHHHHHHHhcCCeEEEEe
Confidence            257888755431       237777777778899887744

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.21  E-value=0.055  Score=52.85  Aligned_cols=95  Identities=17%  Similarity=0.245  Sum_probs=62.2

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHH---hcCCCCCCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVS---SDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~---~~G~l~~~I~f~~~D~~~  195 (284)
                      ++|.+||.|-+|.+ |..|++   .|.+|+++|+|++.++.-++            ++.   +.|    +.++.      
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence            68999999977655 334555   68999999999998885221            111   112    12221      


Q ss_pred             ccccCCCccEEEeccccc------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          196 VKEKLGEYDCIFLAALVG------MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~------~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                        .+....|+||++....      .+...-..+++.+.+.+++|.+++.++.
T Consensus        71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              1123579999875432      1223445677899999999999998874

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.21  E-value=0.062  Score=52.70  Aligned_cols=101  Identities=19%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----------HhcCCCCCCeEEEEecccccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-----------SSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-----------~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      .++++|.+||.|-+|+.....   ...+.+|+++|+|++.++.-++-.           .+.|    +..+. .+. +  
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~---la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~-~--   72 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVE---FGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI-E--   72 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHH---HhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH-H--
Confidence            456899999999777653322   224689999999999988765211           0111    22222 222 1  


Q ss_pred             ccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          198 EKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                       .....|+||++-.-..      +...-....+.+.+.+++|.+++.++.
T Consensus        73 -~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST  121 (425)
T PRK15182         73 -KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST  121 (425)
T ss_pred             -HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence             2346899997654221      112334445789999999999999883

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.21  E-value=0.062  Score=50.09  Aligned_cols=100  Identities=19%  Similarity=0.254  Sum_probs=62.7

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIEFE--------KRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~l~--------~~I~f~~~D~~~  195 (284)
                      ++|.+||+|.+|.+ +..+++   .|.+|+.+|++++.++.+++.++       ..|.+.        .++++. .|.. 
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~-   77 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLA-   77 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHH-
Confidence            47999999987754 333444   68899999999999888765432       234111        123432 2332 


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                        ....+.|+|+.+..-  +.+-|..+++.+.+..+++ .++..+.
T Consensus        78 --~a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~-~ii~sst  118 (308)
T PRK06129         78 --DAVADADYVQESAPE--NLELKRALFAELDALAPPH-AILASST  118 (308)
T ss_pred             --HhhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCc-ceEEEeC
Confidence              223568999976532  2356888898887776555 4444443

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.20  E-value=0.018  Score=53.55  Aligned_cols=94  Identities=9%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             CEEEEecc-CCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccEEE
Q 036061          132 KKVAFVGS-GPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGs-G~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~V~  207 (284)
                      ++||..|+ |++|..++.+|+  ..|+ +|++++.+++..+.+++   .+|. ..-+.....|..+...  ..+.+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk--~~G~~~Vi~~~~s~~~~~~~~~---~lGa-~~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR--LLGCSRVVGICGSDEKCQLLKS---ELGF-DAAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHHH---hcCC-cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence            89999997 899999999999  3688 79999999887666655   3662 2211211112111111  114699998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      -+..     .   ..+....+.|++||+++.-
T Consensus       230 d~~g-----~---~~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         230 DNVG-----G---EISDTVISQMNENSHIILC  253 (345)
T ss_pred             ECCC-----c---HHHHHHHHHhccCCEEEEE
Confidence            5332     1   1247788899999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=96.18  E-value=0.034  Score=51.54  Aligned_cols=99  Identities=18%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+||..|+|.+|..++.+|++  .|. +|++++.+++..+.+++    .| ...-+.....+..+.....+.+|+
T Consensus       162 ~~~~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd~  234 (339)
T cd08232         162 GDLAGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFDV  234 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCccE
Confidence            33478999999999889999999983  577 79999999887776554    45 211111111111122222235999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+-+...       ...++++.+.|+++|+++.-
T Consensus       235 vld~~g~-------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         235 VFEASGA-------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             EEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence            9854331       23567889999999998864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.17  E-value=0.061  Score=52.11  Aligned_cols=103  Identities=15%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC----CCCCeEEEE-eccccccccCCCc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIE----FEKRMKFVT-CDIMQVKEKLGEY  203 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~----l~~~I~f~~-~D~~~~~~~~~~f  203 (284)
                      ++|..||.|-+|+....+..   .|.+|+++|+|++.++..++-...   -|.    ...+.++.. .|..+   .....
T Consensus         1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~---~~~~a   74 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE---AYRDA   74 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh---hhcCC
Confidence            37999999977765444333   378999999999999888762100   000    001222321 11111   12457


Q ss_pred             cEEEecccccC-------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+||++..-..       +...-..+++.+.+ +++|.+++.++.
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST  118 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST  118 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee
Confidence            99987643211       11233567788887 699999888873

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.16  E-value=0.052  Score=42.58  Aligned_cols=93  Identities=13%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEEEec
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCIFLA  209 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V~~a  209 (284)
                      |+.+|+|.+|......-+  ..+..|+.+|.|++.++.+++    .|     +.++.||..+...    ...+.|.|+..
T Consensus         1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHHh----cc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence            578999976555333333  234589999999999877765    22     5799999986422    33468888765


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..    .....-.+-...+.+.|...++++..
T Consensus        70 ~~----~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   70 TD----DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             SS----SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             cC----CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            33    13444455566677789999998874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.14  E-value=0.04  Score=51.32  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccccc--CCC
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEK--LGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~--~~~  202 (284)
                      ...++++||-.|+ |++|..++.+|+  ..|++|++++.+++..+.+++   .+| ...-+.+... |..+....  .+.
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk--~~G~~Vi~~~~~~~~~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAK--LKGCYVVGSAGSDEKVDLLKN---KLG-FDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH---hcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence            4578899999997 889999999999  478999999999887666655   256 2221221111 22111111  146


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-.  ++   .   ..+....+.+++||+++.-.
T Consensus       222 vd~v~d~--~g---~---~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         222 IDIYFDN--VG---G---KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             cEEEEEC--CC---H---HHHHHHHHHhccCcEEEEec
Confidence            9999843  22   1   35678889999999998643

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=96.13  E-value=0.058  Score=49.86  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecc-ccccccCCCc
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDI-MQVKEKLGEY  203 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~-~~~~~~~~~f  203 (284)
                      ....++.+||..|+|++|..++.+|++ ..|++|++++.+++..+.+++    +| ...-+.... .+. ..+....+.+
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~  231 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA  231 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence            345788999999999999999999982 348999999999998777754    45 211111110 111 1111112357


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.++.+..-       ...++...+.++++|.++.-.
T Consensus       232 d~vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        232 HAAVVTAVA-------KAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             cEEEEeCCC-------HHHHHHHHHhccCCCEEEEEe
Confidence            866655431       245788899999999988643

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.12  Score=45.93  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=97.3

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      -+|+-.-...|..+.+.++++||-+|.-+ |.|.-.++. ..+...|.+++.|+.....--.++++-    .+|-=+-+|
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAas-GTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~D  132 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAAS-GTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILED  132 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccC-CCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecc
Confidence            45666666666666789999999999964 788888887 444688999999998876666666553    367778889


Q ss_pred             cccccccC----CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCcc------ccccCccCCCccCCCcE
Q 036061          193 IMQVKEKL----GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGA------RAFLYPVVEKHDLLDFE  261 (284)
Q Consensus       193 ~~~~~~~~----~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~gl------r~~lYp~v~~~dl~gfe  261 (284)
                      +.. |...    ...|+||.+..-   +.+-.=+..+....||+||.+++.- +.+.      +..+-..++...-.||+
T Consensus       133 A~~-P~~Y~~~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~  208 (231)
T COG1889         133 ARK-PEKYRHLVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFE  208 (231)
T ss_pred             cCC-cHHhhhhcccccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCce
Confidence            863 4322    358999976442   2333445667789999999665533 2221      11111111111225799


Q ss_pred             EEEEec--CCcc
Q 036061          262 LLSVFH--PTNE  271 (284)
Q Consensus       262 ~~~~~h--P~~~  271 (284)
                      ++.+.+  |..+
T Consensus       209 i~e~~~LePye~  220 (231)
T COG1889         209 ILEVVDLEPYEK  220 (231)
T ss_pred             eeEEeccCCccc
Confidence            999987  6654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.13  E-value=0.084  Score=49.69  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=68.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +.+.+|..||+|..|.+..++.....-..+++-+|++++. -..+..+.+... +..++.+..+|.    .++.+.|+|+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adivI   78 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLVV   78 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEEE
Confidence            5678999999998887766654411222379999998774 567777776665 334566665543    2356789999


Q ss_pred             ecccc----cCChHH----HHHHHHHHHhhc---CCCcEEEEEe
Q 036061          208 LAALV----GMSKEE----KVKIIKHIRKYM---KDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~----k~~il~~l~~~l---~pGg~lv~r~  240 (284)
                      +.+.+    +|+..+    -.++++++...+   .|.|++++-+
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            88765    444433    233444433333   4788877755

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.10  E-value=0.033  Score=51.11  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f  203 (284)
                      ...++.+||..| +|++|..++.+|+  ..|++|++++.+++..+.+++    +| ...-+.....|..+...  ..+.+
T Consensus       140 ~~~~g~~vlI~ga~g~vG~~aiqlA~--~~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~gv  212 (329)
T cd08294         140 KPKAGETVVVNGAAGAVGSLVGQIAK--IKGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPDGI  212 (329)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCCCc
Confidence            457889999999 6889999999999  468999999999887766655    56 22112222122211110  11369


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+|+-.  ++   .   ..++...+.++++|+++.-
T Consensus       213 d~vld~--~g---~---~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         213 DCYFDN--VG---G---EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             EEEEEC--CC---H---HHHHHHHHhhccCCEEEEE
Confidence            998843  22   1   3568889999999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.09  E-value=0.037  Score=57.60  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|-.-.. +|.  ..|..|+.+|+|+++++.+++.+.+       .|.+        ..+|++. .|.  
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~--  379 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY--  379 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence            58999999988765332 331  2689999999999999998766532       1211        1355543 222  


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...++.|+|+-+.  ..+.+-|.+++.++-++++|+.+|...+
T Consensus       380 --~~~~~adlViEav--~E~l~~K~~v~~~l~~~~~~~~ilasnT  420 (699)
T TIGR02440       380 --RGFKDVDIVIEAV--FEDLALKHQMVKDIEQECAAHTIFASNT  420 (699)
T ss_pred             --HHhccCCEEEEec--cccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence              2356799999763  3456899999999999999998887755

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.06  E-value=0.026  Score=53.12  Aligned_cols=101  Identities=20%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEecccc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIMQ  195 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~~  195 (284)
                      -++|..||+|.+|-.=...+  +.-|..|+.+|+++++++.+++.+++.       |.+.        .++++.    ++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~--A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~----~~   76 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVF--ALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPT----TD   76 (307)
T ss_pred             ccEEEEEcccchhHHHHHHH--hhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcccc----Cc
Confidence            46899999998875422222  235699999999999999998877653       1010        111111    01


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ...+++.|+|+-+..  .+.+-|.++++++-++.+|+++|...+
T Consensus        77 -~~~l~~~DlVIEAv~--E~levK~~vf~~l~~~~~~~aIlASNT  118 (307)
T COG1250          77 -LAALKDADLVIEAVV--EDLELKKQVFAELEALAKPDAILASNT  118 (307)
T ss_pred             -hhHhccCCEEEEecc--ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence             114567899997644  356889999999999999999998766

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.06  E-value=0.058  Score=49.49  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+||-.|+|.+|..++.+|+  ..|.+|++++.+++..+.+++    +|. ...+.+     .+. .....+|
T Consensus       150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~-~~~~~~-----~~~-~~~~~~d  216 (319)
T cd08242         150 QVPITPGDKVAVLGDGKLGLLIAQVLA--LTGPDVVLVGRHSEKLALARR----LGV-ETVLPD-----EAE-SEGGGFD  216 (319)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----cCC-cEEeCc-----ccc-ccCCCCC
Confidence            334578899999999999999999998  578899999999988777766    562 211111     111 1224699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +|+-...-       ...++...+.++++|.++..
T Consensus       217 ~vid~~g~-------~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         217 VVVEATGS-------PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             EEEECCCC-------hHHHHHHHHHhhcCCEEEEE
Confidence            99854321       23567778899999999873

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.039  Score=51.20  Aligned_cols=93  Identities=19%  Similarity=0.131  Sum_probs=61.0

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      -.+|..+|.|-+|-+-....+.......|++.|.+....+.|.+    +| +.+.    ..+.. ........|+|+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence            36899999998887644444433444556777777777666654    44 2221    11110 012335689999987


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      -+    ..-.++++++.+.++||..+.
T Consensus        73 Pi----~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          73 PI----EATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             cH----HHHHHHHHHhcccCCCCCEEE
Confidence            66    677889999999999998764

>PRK10083 putative oxidoreductase; Provisional

Probab=96.04  E-value=0.042  Score=50.90  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCc
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEY  203 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~f  203 (284)
                      ....++.+|+..|+|++|..++.+|++ ..|+ .|+++|.+++..+.+++    +| ...-+.....+..+..... .++
T Consensus       156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~g~~~  229 (339)
T PRK10083        156 TGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKE----SG-ADWVINNAQEPLGEALEEKGIKP  229 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHhcCCCCC
Confidence            346788999999999999999999883 2366 48889999988777765    45 2111122111211111111 135


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+||-+..-       ...+....+.|++||+++.-.
T Consensus       230 d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        230 TLIIDAACH-------PSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             CEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence            677754321       135678889999999998754

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=0.072  Score=48.28  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEeccccccccC--CCcc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM-KFVTCDIMQVKEKL--GEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I-~f~~~D~~~~~~~~--~~fD  204 (284)
                      ..+++.+|||||-++|+|-.+|-+   .-.+|.++|..-.-+.+.-+   .    ..|| .+...|+..+..+.  +..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR---~----d~rV~~~E~tN~r~l~~~~~~~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLR---N----DPRVIVLERTNVRYLTPEDFTEKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHh---c----CCcEEEEecCChhhCCHHHcccCCC
Confidence            378899999999999999877754   45689999999766666544   1    2344 35556665544321  2467


Q ss_pred             EEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++.+. ++     .-..+|..+...++||+-++..-
T Consensus       147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             eEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEe
Confidence            877664 33     33579999999999999887754

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.0079  Score=59.33  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-------cCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-------KLG  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-------~~~  201 (284)
                      ..+.++|.||=|.+++.+.....  +|..++|++++||++++.|++++.-.-  .+|.+.+..|+.+...       +..
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~  369 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI  369 (482)
T ss_pred             cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence            34567777777766666655443  788999999999999999999887554  2467778888865432       223


Q ss_pred             CccEEEeccc----ccCChHH----HHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAAL----VGMSKEE----KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~----v~~~~~~----k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+++++..    .||..++    -..++..+...+.|-|.+++.-
T Consensus       370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            6999997642    2443222    3678899999999999998854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.93  E-value=0.061  Score=49.32  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F-EKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l-~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|+.||+|.+|... ..|++   .|.+|+.+|.+++.++..++    .|. + ....... ....+-+.....+|+||+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~~~~~d~vil   72 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAELGPQDLVIL   72 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhHcCCCCEEEE
Confidence            479999999877542 22333   67899999998876654443    241 0 0111110 001111112357999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.-.    .+-..+++.+.+.+.++..++.-
T Consensus        73 a~k~----~~~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         73 AVKA----YQLPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             eccc----ccHHHHHHHHhhhcCCCCEEEEe
Confidence            6432    34567888999988888766543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.90  E-value=0.045  Score=51.32  Aligned_cols=98  Identities=18%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|+.||+|++|.......+ ...+.+|+.+|++++..   ++++.+.|.     ..+.  ..++.....++|+||.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~-~~g~~~V~v~~r~~~ra---~~la~~~g~-----~~~~--~~~~~~~l~~aDvVi~  244 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLA-AKGVAEITIANRTYERA---EELAKELGG-----NAVP--LDELLELLNEADVVIS  244 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHH-HcCCCEEEEEeCCHHHH---HHHHHHcCC-----eEEe--HHHHHHHHhcCCEEEE
Confidence            47899999999988876555544 12346799999997643   334444552     2221  1122233456899997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....   .. ..++..+.+....++.+++.-+
T Consensus       245 at~~~---~~-~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         245 ATGAP---HY-AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             CCCCC---ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence            65431   11 3444554444333567777654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=95.89  E-value=0.12  Score=47.59  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+||..|+|.+|..++.+|+  ..|.+|++++.+++..+.+++    .|. ..-+.....+...  ...+.+|+|
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~--~~~~~~d~v  229 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYAR--AMGFETVAITRSPDKRELARK----LGA-DEVVDSGAELDEQ--AAAGGADVI  229 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----hCC-cEEeccCCcchHH--hccCCCCEE
Confidence            4577889999999989998888988  468899999999988766643    441 1111111111110  011369999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....-       ...+..+.+.|+++|.++.-.
T Consensus       230 i~~~~~-------~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         230 LVTVVS-------GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EECCCc-------HHHHHHHHHhcccCCEEEEEC
Confidence            854221       135678889999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.86  E-value=0.11  Score=51.82  Aligned_cols=105  Identities=16%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHH---HhcCC-------CCCCeEEEEeccccccccC
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIV---SSDIE-------FEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~---~~~G~-------l~~~I~f~~~D~~~~~~~~  200 (284)
                      ++|..||+|-+|++ |..||+ ...|.+|+++|+|++-++.-++-.   ..-|.       ...+.+|. .|..   ...
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence            58999999966654 455665 334788999999999988743311   01110       01223332 2221   123


Q ss_pred             CCccEEEecccccC-----------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 GEYDCIFLAALVGM-----------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ~~fD~V~~aa~v~~-----------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ...|++|++.....           +...-..+.+.+.+++++|.+++++|.
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            46799988753211           223457889999999999999999883

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.86  E-value=0.0047  Score=61.13  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEE---EeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDN---FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~---iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..-+.+||||||...+.|-++.+    +..+..   -|-.+..++.|.+    -|. -.-+... +. ..++++.+.||+
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfale----RGv-pa~~~~~-~s-~rLPfp~~~fDm  184 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALE----RGV-PAMIGVL-GS-QRLPFPSNAFDM  184 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhh----cCc-chhhhhh-cc-ccccCCccchhh
Confidence            33468999999987776665543    333322   2444444544443    341 1111111 11 346777778999


Q ss_pred             EEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |-.+. ++.+...+ .-+|-++-|+|+|||.+++...
T Consensus       185 vHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  185 VHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhcccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence            98665 55665443 4688999999999999998763

; GO: 0008168 methyltransferase activity

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=95.81  E-value=0.065  Score=50.28  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-------cccccccC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-------IMQVKEKL  200 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-------~~~~~~~~  200 (284)
                      .++.+||..|+|++|..++.+|+  ..|+ +|++++.+++..+.++    ++| ...-+.....+       +.+.. +.
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak--~~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~~~-~~  247 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAK--LAGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRDIT-GG  247 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHHHh-CC
Confidence            47889999999999999999999  3678 9999999988766554    456 22111111111       11111 12


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+|+-...-       ...+....+.++++|.++.-.
T Consensus       248 ~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         248 RGADVVIEASGH-------PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCcEEEECCCC-------hHHHHHHHHHhccCCEEEEEc
Confidence            369999854321       235677888999999998654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.79  E-value=0.059  Score=49.31  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             EEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          133 KVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       133 ~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      +|.+||+|.+|.+-. .|.+ .....+|+++|++++..+.++    +.|. .+.    ..+..+    ..+.|+||++.-
T Consensus         2 ~I~iIG~G~mG~sla~~l~~-~g~~~~v~~~d~~~~~~~~~~----~~g~-~~~----~~~~~~----~~~aD~Vilavp   67 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKE-KGLISKVYGYDHNELHLKKAL----ELGL-VDE----IVSFEE----LKKCDVIFLAIP   67 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHh-cCCCCEEEEEcCCHHHHHHHH----HCCC-Ccc----cCCHHH----HhcCCEEEEeCc
Confidence            799999998776422 2222 112247999999999877654    3552 211    122222    124899998754


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      .    ..-.+++.++.. +++|.+++
T Consensus        68 ~----~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         68 V----DAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             H----HHHHHHHHHHhc-cCCCCEEE
Confidence            3    556678888888 88887554

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.76  E-value=0.046  Score=49.52  Aligned_cols=122  Identities=17%  Similarity=0.180  Sum_probs=75.5

Q ss_pred             hhhHHHHHHhcCCCCcccccc-cCCCcchhhhhhHHHHHHHHhcC---CCCCCEEEEeccCCChhHHHHHHhhcCCCcEE
Q 036061           84 LLELEFATFFAKTPQPLNNLN-LFPYYGNYVKLANLEYRILDENG---VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHF  159 (284)
Q Consensus        84 ~lE~~~a~~l~~~~~p~~~L~-~fpy~~ny~~l~~~E~~~l~~~~---~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V  159 (284)
                      +|-.+|+-+-  -+.|-..|. .-|.-..|+.-+.   .+|.+..   +.+.-++||||.|+--+=.  |--.+..|+++
T Consensus        33 lL~~fY~v~~--wdiPeg~LCPpvPgRAdYih~la---DLL~s~~g~~~~~~i~~LDIGvGAnCIYP--liG~~eYgwrf  105 (292)
T COG3129          33 LLAHFYAVRY--WDIPEGFLCPPVPGRADYIHHLA---DLLASTSGQIPGKNIRILDIGVGANCIYP--LIGVHEYGWRF  105 (292)
T ss_pred             HHHHhcceeE--ecCCCCCcCCCCCChhHHHHHHH---HHHHhcCCCCCcCceEEEeeccCcccccc--cccceeeccee
Confidence            3444554331  144555554 2366666755443   3333332   2466799999999421111  11124679999


Q ss_pred             EEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cCCCccEEEecccc
Q 036061          160 DNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KLGEYDCIFLAALV  212 (284)
Q Consensus       160 ~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~~~fD~V~~aa~v  212 (284)
                      ||-|||+.+++.|+.++.....++..|+.....-.+..+     ....||++..+.-.
T Consensus       106 vGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF  163 (292)
T COG3129         106 VGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF  163 (292)
T ss_pred             ecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence            999999999999999999883388889886543332222     13469999877644

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.69  E-value=0.12  Score=48.36  Aligned_cols=101  Identities=25%  Similarity=0.303  Sum_probs=64.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|..||+|..|.+......  ..|  .+|+.+|++++..+ .|..+..... ......+..+|.    .+..+.|+|++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~--~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALL--LRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHH--HcCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence            37999999988877665443  244  68999999988665 5666555543 223345445553    23567899998


Q ss_pred             ccccc----CChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVG----MSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~----~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++..+    ++..+        -.++.+.+.++ .|.|.+++.+
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            87653    22211        24555666654 5778877764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.68  E-value=0.046  Score=50.26  Aligned_cols=94  Identities=14%  Similarity=0.132  Sum_probs=54.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEecc-ccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDI-MQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~-~~~~~~~~~fD~  205 (284)
                      ++|+.||+|.+|.. +..|++   .|..|+.++. ++.++..++    .|.    ...+..+ .... .+.......+|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~   71 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL   71 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence            47999999988764 333444   5789999999 665554332    331    0001111 0001 111111257999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ||++.--    ..-..+++.+...+.++..++.
T Consensus        72 vilavk~----~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         72 VILAVKA----YQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             EEEEecc----cCHHHHHHHHHhhcCCCCEEEE
Confidence            9986432    3446688888888888876554

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.67  E-value=0.012  Score=57.59  Aligned_cols=100  Identities=25%  Similarity=0.333  Sum_probs=59.5

Q ss_pred             EEEEeccCCChhHHHH---HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EeccccccccCCCccEE
Q 036061          133 KVAFVGSGPMPLTSIV---MAKN-HLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFV-TCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~---LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~-~~D~~~~~~~~~~fD~V  206 (284)
                      +|..||+|.+|.+...   ++.. ...|.+|+-+|+|++.++...+.+++. .......++. +.|..   ..+.+.|+|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~---eal~~AD~V   78 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRR---EALDGADFV   78 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHH---HHhcCCCEE
Confidence            7999999988877444   4422 356789999999999888776655432 0011223443 44532   334578999


Q ss_pred             EecccccCC--------hHHHHHHHHHHHhhcCCCcE
Q 036061          207 FLAALVGMS--------KEEKVKIIKHIRKYMKDGGV  235 (284)
Q Consensus       207 ~~aa~v~~~--------~~~k~~il~~l~~~l~pGg~  235 (284)
                      +.+..++..        .+.|..+++++.+.+.|||.
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi  115 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGI  115 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHH
Confidence            988764221        12344444444445555543

linked to 3D####ucture

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.66  E-value=0.043  Score=51.49  Aligned_cols=100  Identities=9%  Similarity=0.130  Sum_probs=56.5

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C----CCCeEEEEec--cccccccCCCc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F----EKRMKFVTCD--IMQVKEKLGEY  203 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l----~~~I~f~~~D--~~~~~~~~~~f  203 (284)
                      ++|.+||+|.+|..- ..|++   .|.+|+.+|.++.. +.    +++.|. .    ..+.......  ..+-......+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~---~G~~V~~~~r~~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAA---AGADVTLIGRARIG-DE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA   74 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHh---cCCcEEEEecHHHH-HH----HHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence            589999999877543 33333   68899999997532 22    223331 0    0011110000  00011233579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      |+||++.-.    .+..++++.+.+.++++..++.- .+|+
T Consensus        75 D~vil~vk~----~~~~~~~~~l~~~~~~~~iii~~-~nG~  110 (341)
T PRK08229         75 DLVLVTVKS----AATADAAAALAGHARPGAVVVSF-QNGV  110 (341)
T ss_pred             CEEEEEecC----cchHHHHHHHHhhCCCCCEEEEe-CCCC
Confidence            999976432    45567889999998888765433 3454

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.65  E-value=0.088  Score=49.62  Aligned_cols=102  Identities=12%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-eccccccccCCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQI--VSSDIEFEKRMKFVT-CDIMQVKEKLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~  205 (284)
                      +..+|..||+|.+|.+...++.  ..| +.++-+|++++..+ +..+  ...........++.. +|.   . .+.+.|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~--~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~---~-~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLIL--QKNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY---E-DIKDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHH--HCCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH---H-HhCCCCE
Confidence            4579999999998888666554  234 68999999987644 3332  111111122344443 342   2 4567899


Q ss_pred             EEecccccCCh------------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061          206 IFLAALVGMSK------------EEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       206 V~~aa~v~~~~------------~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |++.+.++...            +-+.++.+.+.++ .|.+++++-
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv  121 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV  121 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence            99888653222            3356777777777 577755553

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.64  E-value=0.0065  Score=48.51  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             ChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc---ccccc---CCCccEEEecccccCC
Q 036061          142 MPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM---QVKEK---LGEYDCIFLAALVGMS  215 (284)
Q Consensus       142 lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~---~~~~~---~~~fD~V~~aa~v~~~  215 (284)
                      +|+.++.+|++  .|++|+++|.+++..+.+++    +|.   . .++..+-.   +....   ...+|+||.+...   
T Consensus         2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~----~Ga---~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---   68 (130)
T PF00107_consen    2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKE----LGA---D-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---   68 (130)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH----TTE---S-EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---
T ss_pred             hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHh----hcc---c-ccccccccccccccccccccccceEEEEecCc---
Confidence            57889999993  56999999999998777765    452   1 22222211   11111   1369999976553   


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          216 KEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       216 ~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                          ...++...+.++|||++++-...+
T Consensus        69 ----~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 ----GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ----HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ----HHHHHHHHHHhccCCEEEEEEccC
Confidence                357889999999999999987544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.53  E-value=0.17  Score=46.47  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+||..|+|++|..++.+|+  ..|.+|++++.+++..+.++    ..|. .   .++..+  +.  ..+.+|+
T Consensus       163 ~~~~~~~~vlV~g~g~vg~~~~~la~--~~g~~v~~~~~~~~~~~~~~----~~g~-~---~~~~~~--~~--~~~~vD~  228 (329)
T cd08298         163 AGLKPGQRLGLYGFGASAHLALQIAR--YQGAEVFAFTRSGEHQELAR----ELGA-D---WAGDSD--DL--PPEPLDA  228 (329)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEcCChHHHHHHH----HhCC-c---EEeccC--cc--CCCcccE
Confidence            34577889999999999999999998  46899999999987665553    4562 1   111111  11  1235898


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.....       ...++.+.+.|++||+++.-.
T Consensus       229 vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         229 AIIFAPV-------GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEEcCCc-------HHHHHHHHHHhhcCCEEEEEc
Confidence            8754322       246889999999999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN02256 arogenate dehydrogenase

Probab=95.52  E-value=0.12  Score=48.57  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      |+.-.+.|.+      .....+|..||+|.+|-+-....+  ..|.+|+++|.++. .    +.+...|.     .+ ..
T Consensus        23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~gv-----~~-~~   83 (304)
T PLN02256         23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELGV-----SF-FR   83 (304)
T ss_pred             hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcCC-----ee-eC
Confidence            3555555532      356689999999977664222222  25679999999963 2    33334562     22 23


Q ss_pred             ccccccccCCCccEEEecccccCChHHHHHHHHHH-HhhcCCCcEE
Q 036061          192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHI-RKYMKDGGVL  236 (284)
Q Consensus       192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l-~~~l~pGg~l  236 (284)
                      |..++..  .+.|+|+++.-.    ..-.++++++ ...++||.++
T Consensus        84 ~~~e~~~--~~aDvVilavp~----~~~~~vl~~l~~~~l~~~~iv  123 (304)
T PLN02256         84 DPDDFCE--EHPDVVLLCTSI----LSTEAVLRSLPLQRLKRSTLF  123 (304)
T ss_pred             CHHHHhh--CCCCEEEEecCH----HHHHHHHHhhhhhccCCCCEE
Confidence            3332211  357999987554    4556778888 5678888754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.52  E-value=0.12  Score=48.74  Aligned_cols=104  Identities=19%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCI  206 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V  206 (284)
                      +..+|..||+|.+|.+....+.  ..| ..++-+|++++.. ..+..+...........++.. +|.    .++.+.|+|
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDiV   78 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDVV   78 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCEE
Confidence            3479999999988877655443  345 4799999999853 112222222221122345553 553    245678999


Q ss_pred             Eeccccc----C-------------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVG----M-------------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~----~-------------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..+.++    +             +.+-+.++.+.+.+.. |.|.+++-+
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s  128 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT  128 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            9876442    2             2233677777777775 666555543

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.088  Score=44.68  Aligned_cols=112  Identities=17%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             hhhhHHHHHHHHhcCC-CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 036061          113 VKLANLEYRILDENGV-VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT  190 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~  190 (284)
                      +.-.....+...++.. .+..+.+|+|||-+ -  +.+|. +..| -.-+|++++|--+..+|-.+-+.| ++++.+|..
T Consensus        54 VpAtteQv~nVLSll~~n~~GklvDlGSGDG-R--iVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~R  128 (199)
T KOG4058|consen   54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDG-R--IVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRR  128 (199)
T ss_pred             cCccHHHHHHHHHHccCCCCCcEEeccCCCc-e--eehhh-hhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhh
Confidence            4444333333333333 45589999999963 2  33443 2344 567899999999999999999999 799999999


Q ss_pred             eccccccccCCCccEE--EecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          191 CDIMQVKEKLGEYDCI--FLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       191 ~D~~~~~~~~~~fD~V--~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      -|+  +..++.+|..|  |.+-.+      -..+-..+..-|..+..++
T Consensus       129 kdl--wK~dl~dy~~vviFgaes~------m~dLe~KL~~E~p~nt~vv  169 (199)
T KOG4058|consen  129 KDL--WKVDLRDYRNVVIFGAESV------MPDLEDKLRTELPANTRVV  169 (199)
T ss_pred             hhh--hhccccccceEEEeehHHH------HhhhHHHHHhhCcCCCeEE
Confidence            998  45566666544  333222      1223344555677777654

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=95.51  E-value=0.077  Score=49.43  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec----cccccc--
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD----IMQVKE--  198 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D----~~~~~~--  198 (284)
                      ....++.+||..|+|.+|..++.+|+  ..|.+ |+.++.+++..+.+++    +|. ..-+....-+    ..++..  
T Consensus       158 ~~~~~g~~vlI~g~g~vG~~a~~lak--~~G~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         158 AGVRPGDTVLVFGAGPIGLLTAAVAK--AFGATKVVVTDIDPSRLEFAKE----LGA-THTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----cCC-cEEeccccccchhHHHHHHHHh
Confidence            34678899999999999999999999  36777 9999999888776655    352 1111111111    111111  


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|+|+-...-       ...+....+.++++|+++.-.
T Consensus       231 ~~~~~d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         231 GGKGPDVVIECTGA-------ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence            12359999864331       126788899999999988643

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.50  E-value=0.12  Score=53.04  Aligned_cols=96  Identities=13%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V  206 (284)
                      ..+|+-+|+|..|......-+  ..|..++.+|.|++.++.+++    .|     ...+.||+++..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            479999999998876433222  367899999999999998876    34     467889998642    233478888


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+..    ..+....+-...|.+.|...+++|..
T Consensus       469 vv~~~----d~~~n~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        469 INAID----DPQTSLQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             EEEeC----CHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            75432    23444445556667789999999884

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=95.50  E-value=0.044  Score=50.64  Aligned_cols=96  Identities=14%  Similarity=0.012  Sum_probs=60.6

Q ss_pred             CCCEEEEe--ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCcc
Q 036061          130 NPKKVAFV--GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYD  204 (284)
Q Consensus       130 ~~~~VL~I--GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD  204 (284)
                      ++.+++.+  |+|++|..++.+|+  ..|++|++++.+++..+.+++    +|. ..-+.....+..+..   .....+|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~-~~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGA-EYVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-cEEEECCCccHHHHHHHHhCCCCCc
Confidence            45566664  88999999999999  478999999999988777765    562 211111111211111   1113589


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+-+..-        .......+.+++||+++.-.
T Consensus       215 ~vid~~g~--------~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         215 IFFDAVGG--------GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             EEEECCCc--------HHHHHHHHhhCCCCEEEEEE
Confidence            99854321        12345677889999988754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.49  E-value=0.03  Score=55.61  Aligned_cols=88  Identities=15%  Similarity=0.054  Sum_probs=61.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|+.||.|.+|......++  ..|++|+.+|+||.....|..    .|.     ++  .+..+   .+...|+|+.
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G~-----~~--~~lee---ll~~ADIVI~  315 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EGY-----QV--VTLED---VVETADIFVT  315 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cCc-----ee--ccHHH---HHhcCCEEEE
Confidence            57899999999998888777766  578999999999876543332    352     22  12222   2357899987


Q ss_pred             cccccCChHHHHHHH-HHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKII-KHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il-~~l~~~l~pGg~lv~r  239 (284)
                      +..      . ..++ .+..+.||||++|+--
T Consensus       316 atG------t-~~iI~~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        316 ATG------N-KDIITLEHMRRMKNNAIVGNI  340 (476)
T ss_pred             CCC------c-ccccCHHHHhccCCCcEEEEc
Confidence            642      1 2344 4777899999998664

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.46  E-value=0.14  Score=47.67  Aligned_cols=100  Identities=22%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-cccCCC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-KEKLGE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~~~~~~  202 (284)
                      .+....++.+|+..|+|++|..++.+|+  ..|.+|.+++.+++..+.+++    +|.  +.+ +...+ .+. ....+.
T Consensus       163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~----~g~--~~v-i~~~~-~~~~~~~~~~  232 (337)
T cd05283         163 KRNGVGPGKRVGVVGIGGLGHLAVKFAK--ALGAEVTAFSRSPSKKEDALK----LGA--DEF-IATKD-PEAMKKAAGS  232 (337)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----cCC--cEE-ecCcc-hhhhhhccCC
Confidence            3445678899999999999999999998  468899999999888777653    442  111 11111 111 111246


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+.....    .   ..+....+.|+++|.++.-.
T Consensus       233 ~d~v~~~~g~----~---~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         233 LDLIIDTVSA----S---HDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             ceEEEECCCC----c---chHHHHHHHhcCCCEEEEEe
Confidence            9999854331    1   23577888999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=95.45  E-value=0.089  Score=48.89  Aligned_cols=99  Identities=20%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc----ccccccCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI----MQVKEKLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~----~~~~~~~~  201 (284)
                      ...++.+||..|+|.+|..++.+|+  ..| .+|+++|.+++..+.+++    +| ...-+.....+.    .+.. ...
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~-~~~  234 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQ--LYSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELT-DGR  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHh-CCC
Confidence            4577899999999999999999998  457 789999999887666654    45 222223322221    1111 123


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+|+-+...       ...++.+.+.|+++|+++.-.
T Consensus       235 ~~d~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         235 GVDVVIEAVGI-------PATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             CCCEEEECCCC-------HHHHHHHHHhccCCcEEEEec
Confidence            69999854321       125788889999999998654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.43  E-value=0.27  Score=46.29  Aligned_cols=105  Identities=21%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~  207 (284)
                      +..+|..||+|..|.+..+..........++-+|++++ +-..+..+-..... .....+.. +|..    ++.+.|+|+
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~~~~~v~~~~dy~----~~~~adivv   76 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-LKNPKIEADKDYS----VTANSKVVI   76 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-CCCCEEEECCCHH----HhCCCCEEE
Confidence            34699999999999887665542344567999999876 44666666666542 22234443 5543    356789999


Q ss_pred             ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..    +|+..+        -.++.+.+.++ .|.|.+++-+
T Consensus        77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs  120 (312)
T cd05293          77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS  120 (312)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence            87654    444322        24566666666 7888877755

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.42  E-value=0.085  Score=51.88  Aligned_cols=91  Identities=14%  Similarity=0.211  Sum_probs=58.2

Q ss_pred             CEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|+.|| +|.+|.+.....+  ..|.+|+++|.+++..   .+.+...|.     .+ ..|..   ......|+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~gv-----~~-~~~~~---e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELGV-----EY-ANDNI---DAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcCC-----ee-ccCHH---HHhccCCEEEEec
Confidence            4799998 7877765333322  3678999999998764   233334552     22 22322   2234689999876


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -+    ..-..+++.+...++||.+++--.
T Consensus        67 p~----~~~~~vl~~l~~~l~~~~iViDvs   92 (437)
T PRK08655         67 PI----NVTEDVIKEVAPHVKEGSLLMDVT   92 (437)
T ss_pred             CH----HHHHHHHHHHHhhCCCCCEEEEcc
Confidence            54    445678899999999988665433

>PRK08324 short chain dehydrogenase; Validated

Probab=95.40  E-value=0.32  Score=50.36  Aligned_cols=105  Identities=20%  Similarity=0.280  Sum_probs=65.9

Q ss_pred             CCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061          130 NPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----------  198 (284)
Q Consensus       130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----------  198 (284)
                      .+++||..|+ |.+|........  ..|++|+.+|++++..+.+.+.+...    .++.++.+|+.+...          
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5689999995 555543322221  36899999999998766555433221    478899999875321          


Q ss_pred             cCCCccEEEecccccCC-------hHH-----------HHHHHHHHHhhcCC---CcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMS-------KEE-----------KVKIIKHIRKYMKD---GGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~-------~~~-----------k~~il~~l~~~l~p---Gg~lv~r~  240 (284)
                      ..+..|+||.++.+...       .++           ...+++.+.+.|++   ||.+++-+
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            13468999877653111       111           24566777777776   67776655

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.38  E-value=0.073  Score=51.04  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~a  209 (284)
                      +.+|+|-=||+ |+=+|..|. ..+..+|+.=|+||+|++..+++++... .+ ....+..|+..+.... ..||+|=++
T Consensus        53 ~~~v~Dalsat-GiRgIRya~-E~~~~~v~lNDisp~Avelik~Nv~~N~-~~-~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSAT-GIRGIRYAV-ETGVVKVVLNDISPKAVELIKENVRLNS-GE-DAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeeccccc-chhHhhhhh-hcCccEEEEccCCHHHHHHHHHHHHhcC-cc-cceeecchHHHHHHhcCCCccEEecC
Confidence            89999999986 788899987 2333389999999999999999999883 23 4455558887666553 469999777


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+     .-...+++...+.++.||++.+.-
T Consensus       129 PF-----GSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PF-----GSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CC-----CCCchHHHHHHHHhhcCCEEEEEe
Confidence            66     334568899999999999998854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.36  E-value=0.17  Score=49.11  Aligned_cols=100  Identities=18%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHh-cCCCCCCeEEEEecccccc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSS-DIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~-~G~l~~~I~f~~~D~~~~~  197 (284)
                      ++|.+||+|.+|.+. ..|++   .|.+|+++|++++.++.-++            ++.+ ..  ..++++. .|..+  
T Consensus         1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~~--   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYED--   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHHH--
Confidence            379999999877653 33444   78899999999988765432            1111 00  0134432 23221  


Q ss_pred             ccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .....|+||++..-..      +...-..+.+.+.+.+++|.+++..+
T Consensus        73 -~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        73 -AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             -HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence             2356899997754211      11235667788889999998888776

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.35  E-value=0.082  Score=49.12  Aligned_cols=90  Identities=12%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.+- ..|++   .|.+|+.+|++++.++..++    .|. . .    ..+..++.......|+||++.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g~-~-~----~~s~~~~~~~~~~~dvIi~~v   67 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DRT-T-G----VANLRELSQRLSAPRVVWVMV   67 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cCC-c-c----cCCHHHHHhhcCCCCEEEEEc
Confidence            379999999877542 22333   68899999999987666554    331 1 1    123333332334579998763


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .-    ..-..+++++...+++|.+++-
T Consensus        68 p~----~~~~~v~~~l~~~l~~g~ivid   91 (298)
T TIGR00872        68 PH----GIVDAVLEELAPTLEKGDIVID   91 (298)
T ss_pred             Cc----hHHHHHHHHHHhhCCCCCEEEE
Confidence            32    3446778899999998876544

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.30  E-value=0.25  Score=47.44  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCC--CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLK--STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~--g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----  199 (284)
                      +++++.+|||..+-|++=|+..|...+..  ...|++=|.|+..+..=+.-..++.  +..+.+...|+...+..     
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--SPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--CcceeeecccceeccccccccC
Confidence            35899999999999999888777653322  3479999999999888887776665  34555666666544432     


Q ss_pred             ----CCCccEEEecccc---c------------CChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 ----LGEYDCIFLAALV---G------------MSKE-------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ----~~~fD~V~~aa~v---~------------~~~~-------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          .-.||-|+++.--   |            |..+       -..+++..-.+.||+||.+|+.+
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence                1249999876521   1            1000       12678999999999999999987

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.29  E-value=0.26  Score=46.03  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|..||+|..|.+......  ..|  .+++.+|++++.. ..+..+-+........+.+..+|..    ++.+.|+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~----~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS----DCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH----HhCCCCEEEE
Confidence            37999999987776555433  244  5899999988753 3444443333211234555544432    3467999998


Q ss_pred             cccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.+    +|+..+        -.++.+.+.++ .|.|++++-+
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence            8754    333322        14455555554 6788877755

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.26  E-value=0.057  Score=55.62  Aligned_cols=111  Identities=16%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc------CC-----CcEEEEEeCCh---HH-----------HHHHHHHHHh-----
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH------LK-----STHFDNFDIDE---AA-----------NDVARQIVSS-----  178 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~------~~-----g~~V~~iDid~---~a-----------i~~Ar~~~~~-----  178 (284)
                      .+.-+|+|+|=|+ |+..+...+..      .+     .-+++.+|.+|   +-           .+.++++.+.     
T Consensus        56 ~~~~~i~e~gfG~-G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (662)
T PRK01747         56 RRRFVIAETGFGT-GLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL  134 (662)
T ss_pred             CCcEEEEecCcch-HHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence            3447999999995 78766655422      12     24799999765   22           2333444432     


Q ss_pred             cCC----C-CC--CeEEEEeccccccccC-CCccEEEeccccc-CChHH-HHHHHHHHHhhcCCCcEEEEEe
Q 036061          179 DIE----F-EK--RMKFVTCDIMQVKEKL-GEYDCIFLAALVG-MSKEE-KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       179 ~G~----l-~~--~I~f~~~D~~~~~~~~-~~fD~V~~aa~v~-~~~~~-k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|.    + ..  ..++..||+.+....+ ..||++|++.+-. .+++. -.+++.+++++++|||+++.-+
T Consensus       135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            121    0 12  3446789998776655 4699999998752 12222 2789999999999999998755

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=95.25  E-value=0.25  Score=48.76  Aligned_cols=77  Identities=19%  Similarity=0.332  Sum_probs=52.8

Q ss_pred             CEEEEeccCCChhHHHHHH---hh--cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          132 KKVAFVGSGPMPLTSIVMA---KN--HLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA---~~--~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      .||..||+|.. +|...+-   +.  .+++.+|+-+|||+++++.    |++++++.|.   .+++...  ++....+.+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~---~~~v~~T--tdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYP---EIKFVYT--TDPEEAFTD   74 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCC---CeEEEEE--CCHHHHhCC
Confidence            48999999964 6654432   21  2567999999999998887    5555566662   5665432  233445667


Q ss_pred             ccEEEecccccC
Q 036061          203 YDCIFLAALVGM  214 (284)
Q Consensus       203 fD~V~~aa~v~~  214 (284)
                      -|+||.+..||.
T Consensus        75 ADfVi~~irvGg   86 (437)
T cd05298          75 ADFVFAQIRVGG   86 (437)
T ss_pred             CCEEEEEeeeCC
Confidence            899998887754

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.23  E-value=0.1  Score=51.95  Aligned_cols=97  Identities=11%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .+|.+||.|.+|..   ||++. ..|.+|+++|++++.++...+.....|.   .++ .+.+..++...+.+.|+||+..
T Consensus         2 ~~IgvIGLG~MG~~---lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~i~-~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQN---LALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT---RVK-GYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHH---HHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC---cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence            47999999988755   33322 3788999999999998876664433342   222 2345545444444579888763


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .-   .+.-..+++.+...|++|-+++-
T Consensus        75 ~~---~~~v~~vi~~l~~~L~~g~iIID   99 (470)
T PTZ00142         75 KA---GEAVDETIDNLLPLLEKGDIIID   99 (470)
T ss_pred             CC---hHHHHHHHHHHHhhCCCCCEEEE
Confidence            31   24456788999999998876644

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.22  E-value=0.11  Score=48.44  Aligned_cols=95  Identities=11%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ++|+.||+|++|. -+..|++   .|..|+.++.+++.++.-++   .-|.    -.....+.. ... .+...+.||+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~-~~~-~~~~~~~~D~v   74 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAI-PAE-TADAAEPIHRL   74 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeecc-CCC-CcccccccCEE
Confidence            5899999997664 4455555   67899999998755544333   2221    011111111 111 11223579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      |++. ..   .+-..+++.+.+.+.+++.++.
T Consensus        75 iv~v-K~---~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         75 LLAC-KA---YDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEEC-CH---HhHHHHHHHHHhhCCCCCEEEE
Confidence            9763 21   2345788999999999986544

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.19  E-value=0.085  Score=52.03  Aligned_cols=74  Identities=8%  Similarity=-0.088  Sum_probs=49.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+++|+.||+|..|+++..+..  ..|.+|+.+|.++. ......+.+++.|     |++..++...   ....+|+|+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv   83 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVV   83 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEE
Confidence            34679999999988887655544  47899999997653 3222233344545     5777666433   223689999


Q ss_pred             ecccc
Q 036061          208 LAALV  212 (284)
Q Consensus       208 ~aa~v  212 (284)
                      .+..+
T Consensus        84 ~s~Gi   88 (480)
T PRK01438         84 TSPGW   88 (480)
T ss_pred             ECCCc
Confidence            88776

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.16  E-value=0.1  Score=46.94  Aligned_cols=102  Identities=21%  Similarity=0.180  Sum_probs=61.0

Q ss_pred             CCCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNF--DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..+++||.||+|..+..-+ .|.+   .|++||-|  +++++..+++.     .|    +++++..+..  +.++..+++
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~~-----~~----~i~~~~r~~~--~~dl~g~~L   88 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLKK-----YG----NLKLIKGNYD--KEFIKDKHL   88 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHh-----CC----CEEEEeCCCC--hHHhCCCcE
Confidence            5678999999997655422 3333   68887777  77777655433     23    6888887653  345567899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEE-EecCccccccCcc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV-RSAKGARAFLYPV  251 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~-r~~~glr~~lYp~  251 (284)
                      ||.+..   + +   ++=+.+++..+.-+.++. .+......|..|.
T Consensus        89 ViaATd---D-~---~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PA  128 (223)
T PRK05562         89 IVIATD---D-E---KLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPY  128 (223)
T ss_pred             EEECCC---C-H---HHHHHHHHHHHHcCCeEEEcCCcccCeEEeee
Confidence            987633   1 2   233344444444344333 3333445677774

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.15  E-value=0.12  Score=48.91  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GE  202 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~  202 (284)
                      ..+++++||..| +|..|..++.||++  .|++++.+--+++-.+.+    +++|. ..-|.+...|..+....+   ..
T Consensus       139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~~----~~lGA-d~vi~y~~~~~~~~v~~~t~g~g  211 (326)
T COG0604         139 GLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLELL----KELGA-DHVINYREEDFVEQVRELTGGKG  211 (326)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHHH----HhcCC-CEEEcCCcccHHHHHHHHcCCCC
Confidence            457799999999 88899999999993  555666666666554444    45662 334455555554433222   25


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+|+-...        ...+....+.|++||+++.-..
T Consensus       212 vDvv~D~vG--------~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         212 VDVVLDTVG--------GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             ceEEEECCC--------HHHHHHHHHHhccCCEEEEEec
Confidence            999985432        2455677888999999888554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.14  E-value=0.039  Score=55.76  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID  165 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid  165 (284)
                      ..++++|+.||+||.|+++...++  ..|.+|+.+|..
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~--~~G~~V~v~e~~  169 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLR--RMGHAVTIFEAG  169 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecC
Confidence            467899999999999999998877  468899999964

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.14  E-value=0.2  Score=44.30  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=61.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+++||.||+|..+...+...-  ..|+.||.++.+..  ..-+++. ..|    +++++.++..  ..++..+|+||.+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l~-~~~----~i~~~~~~~~--~~dl~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLLA-EQG----GITWLARCFD--ADILEGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHHH-HcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence            5789999999987766433222  37899999977654  1122222 223    7899888864  3456689999876


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCcc
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPV  251 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~  251 (284)
                      ...   .+.-.++.....    .-|.++-.. ...+..|..|.
T Consensus        77 t~d---~~ln~~i~~~a~----~~~ilvn~~d~~e~~~f~~pa  112 (205)
T TIGR01470        77 TDD---EELNRRVAHAAR----ARGVPVNVVDDPELCSFIFPS  112 (205)
T ss_pred             CCC---HHHHHHHHHHHH----HcCCEEEECCCcccCeEEEee
Confidence            443   223334444443    346655322 22334566663

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.12  E-value=0.37  Score=39.90  Aligned_cols=104  Identities=25%  Similarity=0.349  Sum_probs=65.8

Q ss_pred             CEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .||..||+ |..|.+...+........+++-+|++++ +-..+..+-+........+++..++    ..+..+-|+|++.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD----YEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS----GGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc----ccccccccEEEEe
Confidence            48999999 9888887766654566778999999964 4455666555443222344554433    3345678999988


Q ss_pred             ccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..    +++..+        -.++.+.+.+. .|.|.+++-+
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt  118 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT  118 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence            754    333211        14455556666 4778877765

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.11  E-value=0.07  Score=50.58  Aligned_cols=93  Identities=19%  Similarity=0.231  Sum_probs=60.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||+|.+|.+....++  ..|.+|+++|+++....         +    .+++ ..+..   ..+...|+|++
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~----~~~~-~~~l~---ell~~aDiVil  204 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D----FLTY-KDSVK---EAIKDADIISL  204 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h----hhhc-cCCHH---HHHhcCCEEEE
Confidence            36789999999998876444443  47999999999975421         1    0111 12222   23356899987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +.-.  +.+-+.-+-+.+...|++|++|+- .++|
T Consensus       205 ~lP~--t~~t~~li~~~~l~~mk~gavlIN-~aRG  236 (330)
T PRK12480        205 HVPA--NKESYHLFDKAMFDHVKKGAILVN-AARG  236 (330)
T ss_pred             eCCC--cHHHHHHHhHHHHhcCCCCcEEEE-cCCc
Confidence            6543  344566677889999999886544 4343

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.10  E-value=0.18  Score=51.65  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V  206 (284)
                      ..+|+.+|.|..|......-+  ..|..++.+|.|++.++.+++    .|     ...+.||+++..    ....+.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence            468999999998876433222  367899999999999998865    34     478889998632    133468887


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +.+..    ..+....+-...|.+.|...++.|..+
T Consensus       469 v~~~~----d~~~n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        469 VITCN----EPEDTMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             EEEeC----CHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            75432    133333444556677999999998843

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.03  E-value=0.14  Score=47.46  Aligned_cols=98  Identities=14%  Similarity=0.227  Sum_probs=59.0

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC--CCCCeEEEEeccccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIE--FEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~--l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ++|.+||+|.+|..-. .|++   .|..|+.+|.+++.++..++.-..   .+.  +..++++ ..|..+   .....|+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~   74 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLAR---NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADL   74 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCE
Confidence            3799999997765422 2333   678999999998877655442100   000  0012222 122221   2246899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||++.-    ......+++.+.+.+++|..++.-.
T Consensus        75 vi~~v~----~~~~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         75 ILVAVP----SQALREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             EEEeCC----HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            997643    2566788889999888887765443

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=95.01  E-value=0.096  Score=48.49  Aligned_cols=98  Identities=18%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-c--ccCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-K--EKLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~--~~~~~f  203 (284)
                      ..++.+||..|+|++|..++.+|++  .|. .|++++.+++..+.+++    +|. ..-+.....+..+. .  ...+.+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~i~~~~~~~~~  237 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKE----AGA-TDIINPKNGDIVEQILELTGGRGV  237 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHH----hCC-cEEEcCCcchHHHHHHHHcCCCCC
Confidence            4678899999999889999999993  564 88999999887776655    341 11112222121111 1  112469


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+|+-+..-       ...+....+.|+++|+++.-
T Consensus       238 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         238 DCVIEAVGF-------EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             cEEEEccCC-------HHHHHHHHHHhhcCCEEEEE
Confidence            998853221       14778888999999998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.27  Score=47.94  Aligned_cols=75  Identities=21%  Similarity=0.104  Sum_probs=48.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+++|+.+|+|..|+.......  ..|++|+++|.++ +.++...+.+.+.|     ++++.+|..+  ...+.+|+|+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~   74 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV   74 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence            4689999999987775433222  4799999999986 33322222223333     5677777754  22357999998


Q ss_pred             ccccc
Q 036061          209 AALVG  213 (284)
Q Consensus       209 aa~v~  213 (284)
                      ++.+.
T Consensus        75 ~~g~~   79 (450)
T PRK14106         75 SPGVP   79 (450)
T ss_pred             CCCCC
Confidence            87653

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.01  E-value=0.093  Score=47.94  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc----CCCcEEEEEeC--------------------------ChHHHHHHHHHHHh
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH----LKSTHFDNFDI--------------------------DEAANDVARQIVSS  178 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~----~~g~~V~~iDi--------------------------d~~ai~~Ar~~~~~  178 (284)
                      .-|.-|++.|+-- |-|++.++...    .++-+|.++|-                          .....+..++++++
T Consensus        73 ~vpGdivE~GV~r-Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   73 DVPGDIVECGVWR-GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TS-SEEEEE--TT-SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             CCCeEEEEEeeCC-CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            5778999999975 55666554311    23456777762                          11245666677777


Q ss_pred             cCCCCCCeEEEEeccccccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          179 DIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       179 ~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      .|.+.++++|+.|...+..+..  ..+-++.++.-+   -+.-...|+.++.+|.|||++++.+++
T Consensus       152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---YesT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            7866789999999987655433  245555666533   266778999999999999999998853

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK15076 alpha-galactosidase; Provisional

Probab=94.99  E-value=0.029  Score=55.16  Aligned_cols=79  Identities=23%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             CEEEEeccCCChhHHHH---HH-hhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEE-EeccccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLTSIV---MA-KNHLKSTHFDNFDIDEAANDVARQIVSSDI-EFEKRMKFV-TCDIMQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~---LA-~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-~l~~~I~f~-~~D~~~~~~~~~~fD~  205 (284)
                      .+|..||+|.+|++...   ++ ...+.+.+|+-+|+|++.++.+.+++++.- .....+++. +.|..   ..+.+-|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf   78 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY   78 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence            48999999987766543   22 113467799999999999887666655421 011245555 45532   34456899


Q ss_pred             EEeccccc
Q 036061          206 IFLAALVG  213 (284)
Q Consensus       206 V~~aa~v~  213 (284)
                      |+.++.++
T Consensus        79 Vv~ti~vg   86 (431)
T PRK15076         79 VINAIQVG   86 (431)
T ss_pred             EeEeeeeC
Confidence            99888775

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.29  Score=44.42  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------cCCC
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------KLGE  202 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------~~~~  202 (284)
                      +.++.-|+|.+|.   .+|++...|++|+.+|.+++.++...+.+...|   .++.++.+|+.+...         ..+.
T Consensus         3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~   76 (275)
T PRK06940          3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGP   76 (275)
T ss_pred             CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence            4566667653333   345544578999999999887665555454444   378889999876321         1346


Q ss_pred             ccEEEecccccCChHHH-----------HHHHHHHHhhcCCCcEEEE
Q 036061          203 YDCIFLAALVGMSKEEK-----------VKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k-----------~~il~~l~~~l~pGg~lv~  238 (284)
                      .|+++.++.+....++.           ..+++.+.+.|+++|.+++
T Consensus        77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~  123 (275)
T PRK06940         77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV  123 (275)
T ss_pred             CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence            89998777653222222           3345667777776665444

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=94.93  E-value=0.11  Score=48.44  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~f  203 (284)
                      ..++.+|+..|+|++|..++.+|+  ..|.+ |++++.+++..+.+++    +| ...-+.....+..+.   ......+
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~l~~~~~~~~~  231 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAK--ASGAYPVIVSDPNEYRLELAKK----MG-ATYVVNPFKEDVVKEVADLTDGEGV  231 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hC-CcEEEcccccCHHHHHHHhcCCCCC
Confidence            467889999999999999999998  46786 8888888877766654    45 211111111221111   1122369


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+-+..-       ...+..+.+.|+++|.++.-.
T Consensus       232 d~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       232 DVFLEMSGA-------PKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CEEEECCCC-------HHHHHHHHHhhcCCCEEEEEc
Confidence            999864331       235678899999999987754

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.92  E-value=0.22  Score=50.35  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=64.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~  207 (284)
                      .+|+.+|+|+.|......-+  ..|..|+.||.|++.++.+++    .|     ...++||+++..    ...++.|.|+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence            78999999988776333222  367899999999999888865    24     588999998732    2345789877


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+..   +..+-..+... .+...|+..++.|..
T Consensus       487 v~~~---~~~~~~~iv~~-~~~~~~~~~iiar~~  516 (558)
T PRK10669        487 LTIP---NGYEAGEIVAS-AREKRPDIEIIARAH  516 (558)
T ss_pred             EEcC---ChHHHHHHHHH-HHHHCCCCeEEEEEC
Confidence            5432   11222234444 455689999998874

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=94.91  E-value=0.14  Score=48.43  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cc----cccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DI----MQVKEK  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~----~~~~~~  199 (284)
                      ...++.+||..|+|++|..++.+|+  ..|+ .|++++.+++..+.+++    +| ...-+.....  +.    .+.. .
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~-~  251 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCK--AAGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMT-D  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHh-C
Confidence            4577899999999999999999999  3566 48999999888777754    45 2222222122  11    1111 2


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcC-CCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMK-DGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~-pGg~lv~r~  240 (284)
                       +.+|+|+-+...       ...+....+.++ ++|+++.-.
T Consensus       252 -~~~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         252 -GGVDYAFEVIGS-------ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             -CCCcEEEECCCC-------HHHHHHHHHHhccCCCEEEEEe
Confidence             469999854321       245677888899 999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=94.87  E-value=0.26  Score=48.43  Aligned_cols=77  Identities=25%  Similarity=0.366  Sum_probs=53.5

Q ss_pred             CEEEEeccCCChhHHHHHHh----h-cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          132 KKVAFVGSGPMPLTSIVMAK----N-HLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~----~-~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      .||.+||+|.. +|.-.+-.    . .+++.+|+-+|||++.++.    |++++++.|.   .+++...  ++....+.+
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~---~~~v~~t--tD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA---DIKFEKT--MDLEDAIID   74 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC---CeEEEEe--CCHHHHhCC
Confidence            37999999964 77554432    1 2678999999999988876    6677777773   4565432  223445667


Q ss_pred             ccEEEecccccC
Q 036061          203 YDCIFLAALVGM  214 (284)
Q Consensus       203 fD~V~~aa~v~~  214 (284)
                      .|+||...-+|.
T Consensus        75 ADfVi~~irvGg   86 (425)
T cd05197          75 ADFVINQFRVGG   86 (425)
T ss_pred             CCEEEEeeecCC
Confidence            899998877744

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.84  E-value=0.084  Score=44.55  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||.|.+|..   +|++. ..|..|+.+|++++..+...+    .|     ++. +.+..++.   ...|+||++-
T Consensus         2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~~-~~s~~e~~---~~~dvvi~~v   65 (163)
T PF03446_consen    2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AEV-ADSPAEAA---EQADVVILCV   65 (163)
T ss_dssp             BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EEE-ESSHHHHH---HHBSEEEE-S
T ss_pred             CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hhh-hhhhhhHh---hcccceEeec
Confidence            48999999976643   44432 368999999999977665554    13     222 23333332   2469998653


Q ss_pred             cccCChHHHHHHHHH--HHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKH--IRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~--l~~~l~pGg~lv~r~  240 (284)
                      .   +...-..++..  +...+++|.+++--+
T Consensus        66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s   94 (163)
T PF03446_consen   66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS   94 (163)
T ss_dssp             S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred             c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence            2   23555678888  889999998887655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.83  E-value=0.31  Score=43.63  Aligned_cols=85  Identities=15%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--c--cCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--E--KLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~--~~~~fD~V~  207 (284)
                      ++++.||+|.+|.+..-...  ..|..|+.||.|++.++...+   .    .-..+.+++|+++..  .  ....+|+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~---~----~~~~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLA---D----ELDTHVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhh---h----hcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            57899999999887332222  367899999999998776333   1    124678889988632  2  234799988


Q ss_pred             ecccccCChHHHHHHHHHHHhh
Q 036061          208 LAALVGMSKEEKVKIIKHIRKY  229 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~  229 (284)
                      .+..-    .+-.-++-.++..
T Consensus        72 a~t~~----d~~N~i~~~la~~   89 (225)
T COG0569          72 AATGN----DEVNSVLALLALK   89 (225)
T ss_pred             EeeCC----CHHHHHHHHHHHH
Confidence            55432    2334455555544

>PLN02702 L-idonate 5-dehydrogenase

Probab=94.81  E-value=0.15  Score=47.96  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--Eecccc----cc-
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFV--TCDIMQ----VK-  197 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~--~~D~~~----~~-  197 (284)
                      ....++.+|+.+|+|++|..++.+|++  .|+ .|+++|.+++..+.+++    +| ....+.+.  ..+..+    +. 
T Consensus       177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~  249 (364)
T PLN02702        177 ANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQK  249 (364)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHhh
Confidence            345778999999999999999999993  566 48899999877776655    45 22222221  112111    10 


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+.+|+|+-...-       ...+....+.++++|+++.-.
T Consensus       250 ~~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        250 AMGGGIDVSFDCVGF-------NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             hcCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence            011358999854221       135788899999999988654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.28  Score=48.01  Aligned_cols=76  Identities=9%  Similarity=0.077  Sum_probs=49.6

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccc---cccCCCccEEEe
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGEYDCIFL  208 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~fD~V~~  208 (284)
                      +|++||.|+.|+++..++.  ..|..|+++|..+..-. .....+...|     +++..+.-.+.   ...+.++|.|+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999999999999877765  57999999998765321 1122234444     46655543221   012457999998


Q ss_pred             cccccCC
Q 036061          209 AALVGMS  215 (284)
Q Consensus       209 aa~v~~~  215 (284)
                      ++.+..+
T Consensus        75 s~gi~~~   81 (459)
T PRK02705         75 SPGIPWD   81 (459)
T ss_pred             CCCCCCC
Confidence            8777443

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.74  E-value=0.17  Score=46.96  Aligned_cols=97  Identities=19%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQI--VSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~--~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a  209 (284)
                      |..||+|.+|.+...+..  ..|. +|+.+|++++.. .++..  .+.........++.. +|.    .++.+-|+|+++
T Consensus         1 I~IIGaG~vG~~ia~~la--~~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLLA--LKELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHH--hCCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence            468999988777554433  2332 999999998743 33332  221111112344442 442    235678999986


Q ss_pred             ccc----c--------CChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          210 ALV----G--------MSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       210 a~v----~--------~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.+    +        .+.+-+.++++.+.+.. |.+.+++
T Consensus        74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv  113 (300)
T cd01339          74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIV  113 (300)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            643    1        12344678888888876 5555444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.73  E-value=0.37  Score=44.62  Aligned_cols=95  Identities=13%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc---c-cccC
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ---V-KEKL  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~---~-~~~~  200 (284)
                      ....++.+||..|+ |++|..++.+|+  ..|++|++++.++ ..+    .++..| . +  .+...+-..   . ....
T Consensus       173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~--~~g~~vi~~~~~~-~~~----~~~~~g-~-~--~~~~~~~~~~~~~~~~~~  241 (350)
T cd08274         173 AGVGAGETVLVTGASGGVGSALVQLAK--RRGAIVIAVAGAA-KEE----AVRALG-A-D--TVILRDAPLLADAKALGG  241 (350)
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHH--hcCCEEEEEeCch-hhH----HHHhcC-C-e--EEEeCCCccHHHHHhhCC
Confidence            34578899999998 899999999999  4689999988553 333    334566 2 2  222111100   0 1122


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ..+|+|+-+..     .   ..+....+.|+++|.++.-
T Consensus       242 ~~~d~vi~~~g-----~---~~~~~~~~~l~~~G~~v~~  272 (350)
T cd08274         242 EPVDVVADVVG-----G---PLFPDLLRLLRPGGRYVTA  272 (350)
T ss_pred             CCCcEEEecCC-----H---HHHHHHHHHhccCCEEEEe
Confidence            35999985433     1   2567889999999998854

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.72  E-value=0.37  Score=46.84  Aligned_cols=98  Identities=12%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD  204 (284)
                      ...++|+.+|+|.+|.+....-.  ..|..|+.+|.|++.++..++.    +   ..+.++.||+++..    ....++|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence            34689999999987766333222  3588999999999988776652    2   24678999987532    2335789


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|+....  -  ....-+...+.+.+.+. .++++.
T Consensus       300 ~vi~~~~--~--~~~n~~~~~~~~~~~~~-~ii~~~  330 (453)
T PRK09496        300 AFIALTN--D--DEANILSSLLAKRLGAK-KVIALV  330 (453)
T ss_pred             EEEECCC--C--cHHHHHHHHHHHHhCCC-eEEEEE
Confidence            8875432  1  22223344455666655 455544

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=94.72  E-value=0.33  Score=44.65  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----cccCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----KEKLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~~~~~  201 (284)
                      ...++.+||.+|+|.+|..++.+|+  ..|.+ |+.++.+++..+.+++    .|. .   .++..+-.+.    .....
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~--~~G~~~v~~~~~~~~~~~~~~~----~g~-~---~~~~~~~~~~~~~~~~~~~  225 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLK--LNGASRVTVAEPNEEKLELAKK----LGA-T---ETVDPSREDPEAQKEDNPY  225 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hCC-e---EEecCCCCCHHHHHHhcCC
Confidence            4578899999999988888899998  46777 8999999887776643    452 2   2222211111    11224


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+|+-...       ....+....+.|+++|.++.-.
T Consensus       226 ~vd~v~~~~~-------~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         226 GFDVVIEATG-------VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CCcEEEECCC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence            6999985422       1246778889999999988654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.72  E-value=0.064  Score=44.00  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .-.+++|+.||+|..+-..+.-..  ..|++ |+-+.++.+   +|+++++..+.  ..++++.-  .++...+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~--~~g~~~i~i~nRt~~---ra~~l~~~~~~--~~~~~~~~--~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALA--ALGAKEITIVNRTPE---RAEALAEEFGG--VNIEAIPL--EDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHH--HTTSSEEEEEESSHH---HHHHHHHHHTG--CSEEEEEG--GGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHH--HcCCCEEEEEECCHH---HHHHHHHHcCc--cccceeeH--HHHHHHHhhCCeE
Confidence            357899999999943333222222  34665 999999865   45666666642  35666543  3344445689999


Q ss_pred             EecccccCC
Q 036061          207 FLAALVGMS  215 (284)
Q Consensus       207 ~~aa~v~~~  215 (284)
                      +.+..++|.
T Consensus        80 I~aT~~~~~   88 (135)
T PF01488_consen   80 INATPSGMP   88 (135)
T ss_dssp             EE-SSTTST
T ss_pred             EEecCCCCc
Confidence            988777665

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.69  E-value=0.024  Score=48.68  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||.|.+|-....+++  ..|++|+++|.++..-.    .....+     +++  .+..++   +.+.|+|++
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~el---l~~aDiv~~   97 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDEL---LAQADIVSL   97 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHH---HHH-SEEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhh---cchhhhhhh
Confidence            56899999999998887777766  58999999999998755    122222     222  243332   246899986


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ..-.  +++.+.-+=++..+.||+|++|| ..+.|
T Consensus        98 ~~pl--t~~T~~li~~~~l~~mk~ga~lv-N~aRG  129 (178)
T PF02826_consen   98 HLPL--TPETRGLINAEFLAKMKPGAVLV-NVARG  129 (178)
T ss_dssp             -SSS--STTTTTSBSHHHHHTSTTTEEEE-ESSSG
T ss_pred             hhcc--ccccceeeeeeeeeccccceEEE-eccch
Confidence            6432  22223223345667899998765 44444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.67  E-value=0.13  Score=48.06  Aligned_cols=97  Identities=9%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccCCCc
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ...++|+.||+|.+|.+ |..|++   .|..|+.+..++.  + +   +...|.    ...+..+....+...+...+.|
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~-~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--E-A---VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC   73 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--H-H---HHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence            34579999999977654 333444   6789999999863  2 1   223341    0011111111111112234579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      |+||++.-.    .+-..+++.+...+++++.++.
T Consensus        74 D~vilavK~----~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         74 DWVLVGLKT----TANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CEEEEEecC----CChHhHHHHHhhhcCCCCEEEE
Confidence            999987422    2224677888888999987654

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.65  E-value=0.24  Score=46.04  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH--HHHhcCCCCCCeEEE-EeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ--IVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~--~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|..||+|.+|.+..........+ +|+.+|++++..+ ++.  +.+.........++. ++|.    .+..+-|+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~-~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ-GKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH-HHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence            5899999998777755543312224 9999999998753 322  222211111223443 2343    23457899998


Q ss_pred             cccccC----C--------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGM----S--------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~----~--------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.++.    +        .+.+.++++.+.+.. |++.+++-+
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t  119 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT  119 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            764421    1        244677778888775 666555543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.64  E-value=0.12  Score=48.86  Aligned_cols=107  Identities=16%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-Eecccccccc
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV-TCDIMQVKEK  199 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~  199 (284)
                      ..|.+++..++++|-.+|.|-+|--++.+|+  -.|.+||+||-++.--+-   .++++|. +.=+.+. ..|...-.  
T Consensus       172 spLk~~g~~pG~~vgI~GlGGLGh~aVq~AK--AMG~rV~vis~~~~kkee---a~~~LGA-d~fv~~~~d~d~~~~~--  243 (360)
T KOG0023|consen  172 SPLKRSGLGPGKWVGIVGLGGLGHMAVQYAK--AMGMRVTVISTSSKKKEE---AIKSLGA-DVFVDSTEDPDIMKAI--  243 (360)
T ss_pred             ehhHHcCCCCCcEEEEecCcccchHHHHHHH--HhCcEEEEEeCCchhHHH---HHHhcCc-ceeEEecCCHHHHHHH--
Confidence            3455566789999999999999999999999  479999999999754443   3446773 2222222 22322111  


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+..|.++-.... .    -..-++.+.++||++|.+++-.
T Consensus       244 ~~~~dg~~~~v~~-~----a~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  244 MKTTDGGIDTVSN-L----AEHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             HHhhcCcceeeee-c----cccchHHHHHHhhcCCEEEEEe
Confidence            1234444311110 0    1224577888999999999876

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=94.63  E-value=0.24  Score=45.35  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=64.6

Q ss_pred             CCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc-cCCCcc
Q 036061          128 VVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE-KLGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~-~~~~fD  204 (284)
                      ..++.+||..| +|++|..++.+|+  ..|++|++++.+++..+.+++   .+| ...-+.....+..+ +.. ..+.+|
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~---~~g-~~~~~~~~~~~~~~~v~~~~~~~~d  216 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAK--LLGARVVGIAGSDEKCRWLVE---ELG-FDAAINYKTPDLAEALKEAAPDGID  216 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh---hcC-CceEEecCChhHHHHHHHhccCCce
Confidence            46778999999 6899999999998  478899999999887666654   245 21111211111111 010 014699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+-...      .  ..+....+.++++|+++.-.
T Consensus       217 ~vi~~~g------~--~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         217 VYFDNVG------G--EILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             EEEEcch------H--HHHHHHHHhcCCCceEEEEe
Confidence            9884322      1  36778889999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.63  E-value=0.72  Score=40.18  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=63.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----------  198 (284)
                      ++++|+..|++ .++.. .+++.. ..|++|++++.+++..+...+.....    .++.++.+|+.+...          
T Consensus         4 ~~~~vlItGa~-g~iG~-~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGY-AVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CCcEEEEECCC-chHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence            46799999986 23332 233322 37999999999988766554433332    268899999875221          


Q ss_pred             cCCCccEEEecccccC--ChHHH--------------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGM--SKEEK--------------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~--~~~~k--------------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+..|.++.++....  ...+.              ..+++.+.+.++++|.+++-+
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            1235688876654211  11111              234666777788888777766

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.60  E-value=0.39  Score=46.69  Aligned_cols=95  Identities=15%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~  207 (284)
                      ++|+.+|+|.+|........  ..|..|+.+|.|++.++.+++   ..     .++++.||+++..    ....++|.|+
T Consensus         1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~-----~~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RL-----DVRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hc-----CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            47999999987766444322  368899999999998776554   23     3678889986522    1245789887


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++..    .......+....+.+.|.-.++++.
T Consensus        71 ~~~~----~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         71 AVTD----SDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             EecC----ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            6532    1334445566677776777777765

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=94.59  E-value=0.1  Score=49.43  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc-cCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE-KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~-~~~~f  203 (284)
                      ...++++||..|+|++|..++.+|+  ..|+ .|+++|.+++..+.+++    .|. ..-+.....+..+ +.. ....+
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~--~~G~~~v~~~~~~~~k~~~~~~----~g~-~~~i~~~~~~~~~~v~~~~~~~~  255 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAK--IAGCTTIIAVDIVDSRLELAKE----LGA-THVINPKEEDLVAAIREITGGGV  255 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-cEEecCCCcCHHHHHHHHhCCCC
Confidence            3467899999999999999999999  4677 69999999988776654    452 1111111111111 111 12369


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+-+..-       ...+....+.++++|.++.-.
T Consensus       256 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         256 DYALDTTGV-------PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             cEEEECCCC-------cHHHHHHHHHhccCCEEEEeC
Confidence            999854321       135688899999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.58  E-value=0.15  Score=48.79  Aligned_cols=91  Identities=20%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      ++|.+||+|.+|.+-....+  ..|..|..+|.|+...+.++.  ...|. .+.   ...|.   .....+.|+||++.-
T Consensus         1 ~~I~iIG~GliG~siA~~L~--~~G~~v~i~~~~~~~~~~~~a--~~~~~-~~~---~~~~~---~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIK--AAGPDVFIIGYDPSAAQLARA--LGFGV-IDE---LAADL---QRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHH--hcCCCeEEEEeCCCHHHHHHH--hcCCC-Ccc---cccCH---HHHhcCCCEEEEeCC
Confidence            47999999988866333322  355667777777766554442  23331 111   11222   122356899998765


Q ss_pred             ccCChHHHHHHHHHHHh-hcCCCcEEE
Q 036061          212 VGMSKEEKVKIIKHIRK-YMKDGGVLL  237 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~-~l~pGg~lv  237 (284)
                      .    .....+++++.+ .++||.++.
T Consensus        70 ~----~~~~~vl~~l~~~~l~~~~ivt   92 (359)
T PRK06545         70 V----DATAALLAELADLELKPGVIVT   92 (359)
T ss_pred             H----HHHHHHHHHHhhcCCCCCcEEE
Confidence            4    567788999987 488885544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.55  E-value=0.61  Score=41.03  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             CCCEEEEeccCCChh-HHHHHHhhcCCCc-EEEEEeCC---hHHHHH---------------HHHHHHhcCCCCCCeEEE
Q 036061          130 NPKKVAFVGSGPMPL-TSIVMAKNHLKST-HFDNFDID---EAANDV---------------ARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~-~V~~iDid---~~ai~~---------------Ar~~~~~~G~l~~~I~f~  189 (284)
                      ...+|+.||||.+|- .+..||+   .|. +++-+|.|   +..+.+               +++.+.+.. ..-+++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~   95 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY   95 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence            568999999996554 3444555   676 69999999   333222               333344433 12345554


Q ss_pred             Eecccc--ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          190 TCDIMQ--VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       190 ~~D~~~--~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      ..++.+  +...+.++|+|+.+.   -+.+.|..+++.+.+.+++.-++.
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a~---Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEAF---DNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEECC---CCHHHHHHHHHHHHHHcCCCcEEE
Confidence            444432  111245799998762   234778888999999887644443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=94.54  E-value=0.2  Score=46.44  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f  203 (284)
                      ...++.+||..|+|.+|..++.+|+  ..|.+ |++++.+++..+..+    ..| ...-+........++..  .-..+
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~--~~G~~~v~~~~~~~~~~~~l~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLK--ILGAKRVIAVDIDDEKLAVAR----ELG-ADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHH----HcC-CCEEecCccccHHHHHHHhCCCCC
Confidence            4567889999999988999999998  46786 999999887766554    345 21111111111111111  11249


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+-+..     .  ...+..+.+.|+++|+++.-.
T Consensus       229 d~vld~~g-----~--~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         229 DLVIEAAG-----S--PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CEEEECCC-----C--HHHHHHHHHHhhcCCEEEEEc
Confidence            99985422     1  235678899999999988654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.54  E-value=0.22  Score=47.16  Aligned_cols=107  Identities=14%  Similarity=0.169  Sum_probs=65.3

Q ss_pred             CCCEEEEecc-CCChhHHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          130 NPKKVAFVGS-GPMPLTSIVMAKNHLKST-----HFDNFDIDEA---ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      +|.+|..||+ |..|.+..+..-....-.     .++-+|+.+.   +...|..+.+....+..++++..+|    ..++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~   76 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF   76 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence            4789999999 988887655332111222     7999999543   5667777666552122345654333    2355


Q ss_pred             CCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.|+|++.+.+    +++..+        -.++...+.++-.|.|++++-+
T Consensus        77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            678999988765    444322        2344455555533588877765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=94.50  E-value=0.15  Score=48.61  Aligned_cols=100  Identities=22%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---c----cccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---D----IMQVKE  198 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D----~~~~~~  198 (284)
                      ...++.+||..|+|++|..++.+|+  ..|+ +|++++.+++..+.++    ++| ...-+.....   +    +.+.. 
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~--~~G~~~vi~~~~~~~~~~~~~----~~g-~~~~v~~~~~~~~~~~~~v~~~~-  271 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAK--AAGASKVIAFEISEERRNLAK----EMG-ADYVFNPTKMRDCLSGEKVMEVT-  271 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHH----HcC-CCEEEcccccccccHHHHHHHhc-
Confidence            4577899999999999999999999  4677 7999999988654444    456 3211111111   1    11111 


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|+|+-+  .+    .....+.+..+.|+++|+++.-.
T Consensus       272 ~g~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         272 KGWGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence            11359988743  32    22346778889999999998754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.48  E-value=0.25  Score=47.97  Aligned_cols=101  Identities=21%  Similarity=0.368  Sum_probs=69.7

Q ss_pred             CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      +||..+|+|=.|+ ++.+||+   .|..|+|+|+|+.-++.=++            ++++.. ...|.+|- .|.   ..
T Consensus         1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~---~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDY---EE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCH---HH
Confidence            5789999995554 6788888   88999999999998887543            333333 23457773 333   23


Q ss_pred             cCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .....|++|++..-..      +..--+.+.+.+..+++...+++..|
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            3456799998753211      22333778889999988888888877

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.47  E-value=0.11  Score=51.78  Aligned_cols=74  Identities=11%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|+.+|.|..|++++.+.+  ..|++|++.|..+...+.    ++..|     +++..++..  ...+..+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~~--~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSDA--VQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcch--HhHhhcCCEEEE
Confidence            46789999999999999987766  588999999987665332    33345     355544321  223456899999


Q ss_pred             cccccCC
Q 036061          209 AALVGMS  215 (284)
Q Consensus       209 aa~v~~~  215 (284)
                      +..+..+
T Consensus        77 SpGi~~~   83 (488)
T PRK03369         77 SPGFRPT   83 (488)
T ss_pred             CCCCCCC
Confidence            8887443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.47  E-value=0.17  Score=49.05  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             CEEEEeccCCChhHHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVM-AKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~L-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V~  207 (284)
                      ++||-||||..|-++... |+  ....+|+..|.+++..+.+...   .+   .++++++-|+.+...   -++++|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~---~~---~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAEL---IG---GKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhh---cc---ccceeEEecccChHHHHHHHhcCCEEE
Confidence            589999999887776655 54  2338999999998887777663   22   388999999987543   346789999


Q ss_pred             eccc
Q 036061          208 LAAL  211 (284)
Q Consensus       208 ~aa~  211 (284)
                      .++.
T Consensus        74 n~~p   77 (389)
T COG1748          74 NAAP   77 (389)
T ss_pred             EeCC
Confidence            6653

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=94.47  E-value=0.21  Score=46.24  Aligned_cols=99  Identities=21%  Similarity=0.268  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~f  203 (284)
                      ...++.+||..|+|.+|..++.+|+  ..|.+|+++..+++..+..++    .| ...-+.....+..+ +.  .....+
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~--~~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAK--ARGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCCC
Confidence            4577889999999988999999999  468999999888887776644    34 11112222222111 11  112359


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+++....-       ...+..+.+.|+++|.++.-
T Consensus       229 d~vld~~g~-------~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         229 DVVIDATGN-------PASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             CEEEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence            999865321       23568889999999998864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK05442 malate dehydrogenase; Provisional

Probab=94.44  E-value=0.25  Score=46.79  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             CCCCEEEEecc-CCChhHHHHH-HhhcCCC----cEEEEEeCChH---HHHHHHHHHHhc-CCCCCCeEEEEeccccccc
Q 036061          129 VNPKKVAFVGS-GPMPLTSIVM-AKNHLKS----THFDNFDIDEA---ANDVARQIVSSD-IEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       129 ~~~~~VL~IGs-G~lp~tai~L-A~~~~~g----~~V~~iDid~~---ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~  198 (284)
                      +.|.+|..||+ |..|.+..+. +..-..+    ..++-+|+.+.   +-..|..+.+.. . +..++++..+|-    .
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~y----~   76 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFP-LLAGVVITDDPN----V   76 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhh-hcCCcEEecChH----H
Confidence            56889999998 9988885442 2211111    27999999653   566777776655 3 223555554332    3


Q ss_pred             cCCCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++.|+|++.+.+    +++..+        -.++.+.+.++-+|.|.+++-+
T Consensus        77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            45678999987765    444333        1344455555545688888766

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=94.40  E-value=0.4  Score=42.85  Aligned_cols=94  Identities=14%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCcc
Q 036061          128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD  204 (284)
                      ..++.+|+..|+ |++|..++.+|+  ..|.+|++++.++ ..+.+    +..| ..   .+......+..  .....+|
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~d  210 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAK--ARGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGVD  210 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHH--HcCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCce
Confidence            567899999996 889999998988  4789999988766 44443    4456 21   12221111111  1223589


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++-...     .   .......+.++++|.++.-.
T Consensus       211 ~v~~~~~-----~---~~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         211 AVLDTVG-----G---ETLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             EEEECCc-----h---HHHHHHHHHHhcCcEEEEEc
Confidence            8885422     1   15677888999999988653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=94.35  E-value=0.64  Score=42.95  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~  202 (284)
                      ...++.+||..|+|.+|..++.+|+  ..|. +|++++.+++..+.+++    +|.  .-+.....+... +.  .....
T Consensus       164 ~~~~~~~vlI~g~g~vg~~~~~~a~--~~g~~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~l~~~~~~~~  235 (344)
T cd08284         164 QVRPGDTVAVIGCGPVGLCAVLSAQ--VLGAARVFAVDPVPERLERAAA----LGA--EPINFEDAEPVERVREATEGRG  235 (344)
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHH--HcCCceEEEEcCCHHHHHHHHH----hCC--eEEecCCcCHHHHHHHHhCCCC
Confidence            3467899999999999999999999  4675 89999888877655544    562  111111111100 11  11235


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-+..-       ...+....+.|+++|+++.-.
T Consensus       236 ~dvvid~~~~-------~~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         236 ADVVLEAVGG-------AAALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             CCEEEECCCC-------HHHHHHHHHhcccCCEEEEEC
Confidence            9998854321       235778888999999987643

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=94.34  E-value=0.43  Score=43.97  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+|+..|+ |++|..++.+|+  ..|++|++++.+++..+.+++++...  +..+ .+    ..++.. ++.+|+
T Consensus       159 ~~~~~~~vlI~g~~g~~g~~~~~la~--~~g~~vi~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~v~~-~~~~d~  228 (334)
T PRK13771        159 GVKKGETVLVTGAGGGVGIHAIQVAK--ALGAKVIAVTSSESKAKIVSKYADYV--IVGS-KF----SEEVKK-IGGADI  228 (334)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHHh--cCch-hH----HHHHHh-cCCCcE
Confidence            4567899999999 799999999999  46899999999999988887752111  1111 11    011111 235898


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++-+..     .   ..+..+.+.+++||.++.-.
T Consensus       229 ~ld~~g-----~---~~~~~~~~~l~~~G~~v~~g  255 (334)
T PRK13771        229 VIETVG-----T---PTLEESLRSLNMGGKIIQIG  255 (334)
T ss_pred             EEEcCC-----h---HHHHHHHHHHhcCCEEEEEe
Confidence            884322     1   24678888899999988643

>PLN02688 pyrroline-5-carboxylate reductase

Probab=94.33  E-value=0.22  Score=45.04  Aligned_cols=86  Identities=22%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCc----EEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKST----HFDNF-DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~----~V~~i-Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ++|.+||+|.+|.+   +++.. ..|.    +|+.+ |.+++..+.+    .+.|.     +. ..|..+.   ..+.|+
T Consensus         1 ~kI~~IG~G~mG~a---~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~g~-----~~-~~~~~e~---~~~aDv   64 (266)
T PLN02688          1 FRVGFIGAGKMAEA---IARGLVASGVVPPSRISTADDSNPARRDVF----QSLGV-----KT-AASNTEV---VKSSDV   64 (266)
T ss_pred             CeEEEECCcHHHHH---HHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHcCC-----EE-eCChHHH---HhcCCE
Confidence            47999999987754   22211 1344    78888 9998775443    23452     22 2232222   235799


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      ||++..    +....+++..+...+++|..++
T Consensus        65 Vil~v~----~~~~~~vl~~l~~~~~~~~~iI   92 (266)
T PLN02688         65 IILAVK----PQVVKDVLTELRPLLSKDKLLV   92 (266)
T ss_pred             EEEEEC----cHHHHHHHHHHHhhcCCCCEEE
Confidence            998653    3667888888888888887655

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=94.32  E-value=0.22  Score=45.66  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-ccccccCCCc
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEKLGEY  203 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~~~~f  203 (284)
                      ....++.+|+.+|+ |++|..++.+|+  ..|.+|++++.+        +.++.+|. ..  .+-..+. ..+....+.+
T Consensus       158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~--~~G~~v~~~~~~--------~~~~~~g~-~~--~~~~~~~~~~l~~~~~~~  224 (325)
T cd08264         158 AGLGPGETVVVFGASGNTGIFAVQLAK--MMGAEVIAVSRK--------DWLKEFGA-DE--VVDYDEVEEKVKEITKMA  224 (325)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHH--HcCCeEEEEeHH--------HHHHHhCC-Ce--eecchHHHHHHHHHhCCC
Confidence            45678899999997 999999999999  468889888622        33345662 11  1111111 1111111468


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+-+..      .  ..+....+.|+++|.++.-.
T Consensus       225 d~vl~~~g------~--~~~~~~~~~l~~~g~~v~~g  253 (325)
T cd08264         225 DVVINSLG------S--SFWDLSLSVLGRGGRLVTFG  253 (325)
T ss_pred             CEEEECCC------H--HHHHHHHHhhccCCEEEEEe
Confidence            99884322      1  36788899999999998754

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.30  E-value=0.45  Score=44.68  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCC-CCeEEEEeccccccccCCCccEEEecc
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +|..||+|..|.+..++.-.......++-+|++++ +-..|..+.+...... .++++..+|..    ++++.|+|++.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~----~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD----DCADADIIVITA   76 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH----HhCCCCEEEECC
Confidence            57899999888877443321233457999999766 5566777666554221 35777777643    456789999887


Q ss_pred             cc----cCCh------HHH----HHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSK------EEK----VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~------~~k----~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+    ||+.      ..-    .++.+.+.++ .|+|.+++-+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvs  119 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILIT  119 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence            65    4542      112    3344445544 4778877755

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=94.29  E-value=0.16  Score=47.43  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .+|.|||-|.+|..   +|++. ..|..|+.+|.+++..   .+.+...|.     +..... .   ..-...|+||.+-
T Consensus         1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a~s~-~---eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVAASP-A---EAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----cccCCH-H---HHHHhCCEEEEec
Confidence            47999999988766   55543 4689999999998872   333334552     111111 1   1124689998653


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~  240 (284)
                      .   +..+-..++   .-+...++||.++|-.+
T Consensus        66 ~---~~~~V~~V~~g~~g~~~~~~~G~i~IDmS   95 (286)
T COG2084          66 P---DDAAVRAVLFGENGLLEGLKPGAIVIDMS   95 (286)
T ss_pred             C---CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence            2   235556666   56888999999998866

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.26  E-value=0.44  Score=45.14  Aligned_cols=107  Identities=20%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             CCCEEEEecc-CCChhHHHHHHhhcCCCc-----EEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          130 NPKKVAFVGS-GPMPLTSIVMAKNHLKST-----HFDNFDIDE---AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~-----~V~~iDid~---~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      .|-+|..||+ |..|.+..........-.     .++-+|+.+   .+...|..+.+........+++..+|.    .++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~   77 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE----EAF   77 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH----HHh
Confidence            5789999998 988888655433111112     799999964   267777777766521223455443332    345


Q ss_pred             CCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.|+|++.+.+    +++..+        -.++.+.+.++-.|.|++++-+
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            678999988765    444433        2456666666644488888866

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=94.26  E-value=0.5  Score=46.37  Aligned_cols=75  Identities=27%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             CEEEEeccCCChhHHHHHHh-----hcCCCcEEEEEeCC-hHHHHH----HHHHHHhcCCCCCCeEEEE-eccccccccC
Q 036061          132 KKVAFVGSGPMPLTSIVMAK-----NHLKSTHFDNFDID-EAANDV----ARQIVSSDIEFEKRMKFVT-CDIMQVKEKL  200 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~-----~~~~g~~V~~iDid-~~ai~~----Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~  200 (284)
                      .||..||.|.. +|...+..     ..+++.+|+-+||| ++.++.    +++++++.|.   .+++.. .|.   ...+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~---~~~v~~t~d~---~~al   73 (419)
T cd05296           1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGL---PIKVHLTTDR---REAL   73 (419)
T ss_pred             CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCC---CeEEEEeCCH---HHHh
Confidence            47999999964 66554432     12567999999999 788754    7777777772   566653 343   3445


Q ss_pred             CCccEEEeccccc
Q 036061          201 GEYDCIFLAALVG  213 (284)
Q Consensus       201 ~~fD~V~~aa~v~  213 (284)
                      .+-|+|+....+|
T Consensus        74 ~gadfVi~~~~vg   86 (419)
T cd05296          74 EGADFVFTQIRVG   86 (419)
T ss_pred             CCCCEEEEEEeeC
Confidence            5679999888773

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.25  E-value=0.099  Score=51.34  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=64.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~aa  210 (284)
                      --||+||+|+ |+-+++-++ +. +-.||+++.=..|.+.||+...+.| .+++|+++.---+++.-.. ..-|++.-.-
T Consensus        68 v~vLdigtGT-GLLSmMAvr-ag-aD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~vg~~~RadI~v~e~  143 (636)
T KOG1501|consen   68 VFVLDIGTGT-GLLSMMAVR-AG-ADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVKVGGSSRADIAVRED  143 (636)
T ss_pred             EEEEEccCCc-cHHHHHHHH-hc-CCeEEeehhhchHHHHHHHHHhcCC-CccceeeeccccceeeecCcchhhhhhHhh
Confidence            4689999997 666676666 23 4569999999999999999999999 8999999876666554321 1245543111


Q ss_pred             ----cccCChHHHHHHHHHHHhhcCCCc
Q 036061          211 ----LVGMSKEEKVKIIKHIRKYMKDGG  234 (284)
Q Consensus       211 ----~v~~~~~~k~~il~~l~~~l~pGg  234 (284)
                          ++|   +--..-+++.+++|...+
T Consensus       144 fdtElig---eGalps~qhAh~~L~~~n  168 (636)
T KOG1501|consen  144 FDTELIG---EGALPSLQHAHDMLLVDN  168 (636)
T ss_pred             hhhhhhc---cccchhHHHHHHHhcccC
Confidence                222   112334566666655443

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.24  E-value=0.17  Score=44.80  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH---HHH-HHHH-HHhcCCCCCCeEEEEeccccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA---NDV-ARQI-VSSDIEFEKRMKFVTCDIMQV  196 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a---i~~-Ar~~-~~~~G~l~~~I~f~~~D~~~~  196 (284)
                      .|.-++++++++|.|+=-|.+-+| ..++....+...|+++=..+-.   +.. .+.. +.+.. ...+++.+-.+...+
T Consensus        40 ~L~FaGlkpg~tVid~~PGgGy~T-rI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~  117 (238)
T COG4798          40 VLAFAGLKPGATVIDLIPGGGYFT-RIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVAL  117 (238)
T ss_pred             eeEEeccCCCCEEEEEecCCccHh-hhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCccccc
Confidence            444557899999999987754455 4577766677788887655431   111 1111 11111 223444444444333


Q ss_pred             cccCCCccEEEe--------cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFL--------AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~--------aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      . ....-|+++.        ...+  +...-.++..++++.|||||++++.+
T Consensus       118 ~-~pq~~d~~~~~~~yhdmh~k~i--~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         118 G-APQKLDLVPTAQNYHDMHNKNI--HPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             C-CCCcccccccchhhhhhhcccc--CcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            3 2223455443        3333  24556789999999999999999977

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.24  E-value=0.3  Score=45.34  Aligned_cols=92  Identities=12%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||.|.+|.. +..|++   .|.+|+.+|.+++..+...    ..|.     +. ..+..++.......|+|++..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~~-~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEGA-----TG-ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCCC-----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence            37999999987754 222333   6889999999998876653    3452     21 223333322222358888653


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .-   .+.-..+++.+...+++|.+++--
T Consensus        68 ~~---~~~~~~v~~~l~~~l~~g~ivid~   93 (301)
T PRK09599         68 PA---GEITDATIDELAPLLSPGDIVIDG   93 (301)
T ss_pred             cC---CcHHHHHHHHHHhhCCCCCEEEeC
Confidence            31   124456778888889988766554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.22  E-value=0.19  Score=46.74  Aligned_cols=89  Identities=11%  Similarity=0.023  Sum_probs=55.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|+.+|.|.+|......++  ..|++|+.+|.+++..+.+.    ..|.     +..  +..++...+.++|+|+.
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~~----~~g~-----~~~--~~~~l~~~l~~aDiVin  215 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARIT----EMGL-----IPF--PLNKLEEKVAEIDIVIN  215 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HCCC-----eee--cHHHHHHHhccCCEEEE
Confidence            46789999999988877665555  46899999999987654432    3442     111  11222333467999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +.-.++       +-+...+.|++|++++
T Consensus       216 t~P~~i-------i~~~~l~~~k~~aliI  237 (287)
T TIGR02853       216 TIPALV-------LTADVLSKLPKHAVII  237 (287)
T ss_pred             CCChHH-------hCHHHHhcCCCCeEEE
Confidence            643221       1133556788876554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=94.22  E-value=0.33  Score=46.19  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--c----cccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--I----MQVKEK  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~----~~~~~~  199 (284)
                      ...++.+||..|+|++|..++.+|+  ..|. +|+.+|.+++..+.+++    +| ...-+.....+  .    .... .
T Consensus       187 ~~~~g~~VlV~G~g~vG~~~~~~a~--~~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~-~  258 (373)
T cd08299         187 KVTPGSTCAVFGLGGVGLSAIMGCK--AAGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMT-D  258 (373)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHh-C
Confidence            4577899999999999999999998  4677 89999999887766644    56 22112221111  1    1111 1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHH-HHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKH-IRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~-l~~~l~pGg~lv~r~  240 (284)
                       +.+|+|+-+..-       ...+.. +...+++||+++.-.
T Consensus       259 -~~~d~vld~~g~-------~~~~~~~~~~~~~~~G~~v~~g  292 (373)
T cd08299         259 -GGVDFSFEVIGR-------LDTMKAALASCHEGYGVSVIVG  292 (373)
T ss_pred             -CCCeEEEECCCC-------cHHHHHHHHhhccCCCEEEEEc
Confidence             369998754321       123444 444556888887764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=94.20  E-value=0.55  Score=46.25  Aligned_cols=79  Identities=20%  Similarity=0.310  Sum_probs=56.5

Q ss_pred             CCEEEEeccCCChhHHHHHHh----hcCCCcEEEEEeCChHHHH----HHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          131 PKKVAFVGSGPMPLTSIVMAK----NHLKSTHFDNFDIDEAAND----VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~----~~~~g~~V~~iDid~~ai~----~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      .-+|.+||.|....+-+.+.-    ..+++.++.-+|||+++.+    .+++++++.|.   .+++....  +....+.+
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~---~~kv~~tt--d~~eAl~g   77 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA---PVKVEATT--DRREALEG   77 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC---CeEEEEec--CHHHHhcC
Confidence            458999999965443332221    1367899999999999999    89999999994   36665433  23345567


Q ss_pred             ccEEEecccccC
Q 036061          203 YDCIFLAALVGM  214 (284)
Q Consensus       203 fD~V~~aa~v~~  214 (284)
                      -|+|+....||.
T Consensus        78 AdfVi~~~rvG~   89 (442)
T COG1486          78 ADFVITQIRVGG   89 (442)
T ss_pred             CCEEEEEEeeCC
Confidence            899998887743

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=94.18  E-value=0.18  Score=43.99  Aligned_cols=75  Identities=25%  Similarity=0.402  Sum_probs=46.2

Q ss_pred             EEEEeccCCChhHHHHHHh----hcCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEE-EeccccccccCCCc
Q 036061          133 KVAFVGSGPMPLTSIVMAK----NHLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEY  203 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~----~~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~f  203 (284)
                      ||.+||.|..-++-..+..    ..+++.+++-+|+|++.++.    |++++++.|.   ++++. +.|.   ...+.+.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~---~~~v~~ttd~---~eAl~gA   74 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGA---DLKVEATTDR---REALEGA   74 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTT---SSEEEEESSH---HHHHTTE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCC---CeEEEEeCCH---HHHhCCC
Confidence            6889999965444333221    13567899999999988875    5555566662   55653 3343   3345578


Q ss_pred             cEEEeccccc
Q 036061          204 DCIFLAALVG  213 (284)
Q Consensus       204 D~V~~aa~v~  213 (284)
                      |+|+...-+|
T Consensus        75 DfVi~~irvG   84 (183)
T PF02056_consen   75 DFVINQIRVG   84 (183)
T ss_dssp             SEEEE---TT
T ss_pred             CEEEEEeeec
Confidence            9999877664

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=94.18  E-value=0.26  Score=46.78  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKL  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~  200 (284)
                      .....++.+|+..|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|.  .-+.+...+..+ +.  .. 
T Consensus       171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~--~~G~~~vi~~~~~~~~~~~~~~----~g~--~~v~~~~~~~~~~i~~~~~-  241 (375)
T cd08282         171 LAGVQPGDTVAVFGAGPVGLMAAYSAI--LRGASRVYVVDHVPERLDLAES----IGA--IPIDFSDGDPVEQILGLEP-  241 (375)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC--eEeccCcccHHHHHHHhhC-
Confidence            344578899999999999999999998  4676 79999999887766654    451  111111111111 11  11 


Q ss_pred             CCccEEEecccccC----ChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          201 GEYDCIFLAALVGM----SKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       201 ~~fD~V~~aa~v~~----~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.+|+|+-...-..    -...+...+....+.++++|.++.-
T Consensus       242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  284 (375)
T cd08282         242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV  284 (375)
T ss_pred             CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence            35899985432100    0012344578889999999998654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.18  E-value=0.059  Score=55.51  Aligned_cols=74  Identities=24%  Similarity=0.363  Sum_probs=49.0

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-----------------HHHHHHHHHHhcCCCCCCeEEEEe-
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-----------------ANDVARQIVSSDIEFEKRMKFVTC-  191 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-----------------ai~~Ar~~~~~~G~l~~~I~f~~~-  191 (284)
                      .+++|+.||+||.|+++...+.  ..|.+|+.+|.++.                 .++.-.+.++++|     ++|..+ 
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~--~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~  398 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLA--RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELNC  398 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECCC
Confidence            5689999999999999887766  47899999997643                 4444455566666     344432 


Q ss_pred             ----ccccccccCCCccEEEeccc
Q 036061          192 ----DIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       192 ----D~~~~~~~~~~fD~V~~aa~  211 (284)
                          |+. +......||.||++..
T Consensus       399 ~v~~~i~-~~~~~~~~DavilAtG  421 (654)
T PRK12769        399 EVGKDIS-LESLLEDYDAVFVGVG  421 (654)
T ss_pred             EeCCcCC-HHHHHhcCCEEEEeCC
Confidence                211 1111246999998653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.14  E-value=0.3  Score=44.95  Aligned_cols=93  Identities=19%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CEEEEeccCCChhHHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+|.+||+|.+|.+-.. |.+. +....+|+++|++++..+.+.+   +.|.     +. +.|..+.   ..+.|+||++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g~-----~~-~~~~~e~---~~~aDiIiLa   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYGI-----TI-TTNNNEV---ANSADILILS   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcCc-----EE-eCCcHHH---HhhCCEEEEE
Confidence            58999999987754221 1110 0123479999999877554333   4452     22 2333222   2357999976


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .-    +..-..+++.+...++++. +++.-.
T Consensus        71 vk----P~~~~~vl~~l~~~~~~~~-lvISi~   97 (272)
T PRK12491         71 IK----PDLYSSVINQIKDQIKNDV-IVVTIA   97 (272)
T ss_pred             eC----hHHHHHHHHHHHHhhcCCc-EEEEeC
Confidence            43    3667788888888887764 444443

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=94.14  E-value=0.22  Score=46.11  Aligned_cols=95  Identities=21%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             CCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++.+|+..| +|++|..++.+|+  ..|++|+++..+ +    .++.++..| ...-+.....+..+.....+.+|+|+-
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~-~----~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~  233 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLK--AWGAHVTTTCST-D----AIPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD  233 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH--HCCCeEEEEeCc-c----hHHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence            489999999 6999999999998  468898887744 3    234555566 221111111111111112346899984


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...     .   ..+....+.++++|+++.-.
T Consensus       234 ~~g-----~---~~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         234 TVG-----G---DTEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             CCC-----h---HHHHHHHHHhccCCEEEEec
Confidence            422     1   15678889999999998643

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.13  E-value=0.28  Score=51.15  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++|.+||+|.+|.+.....+  ..|  .+|+++|.+++..+.+++    .|. ..  . ...|.   .......|+||++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~--~~G~~~~V~~~d~~~~~~~~a~~----~g~-~~--~-~~~~~---~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALR--ERGLAREVVAVDRRAKSLELAVS----LGV-ID--R-GEEDL---AEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHH--hcCCCCEEEEEECChhHHHHHHH----CCC-CC--c-ccCCH---HHHhcCCCEEEEC
Confidence            68999999988876444333  234  579999999988776543    452 11  0 11122   2223568999987


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .-.    .....+++.+.+.++++.+++.
T Consensus        71 vp~----~~~~~vl~~l~~~~~~~~ii~d   95 (735)
T PRK14806         71 VPV----LAMEKVLADLKPLLSEHAIVTD   95 (735)
T ss_pred             CCH----HHHHHHHHHHHHhcCCCcEEEE
Confidence            543    5667888999998888765543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.11  E-value=0.042  Score=54.42  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=85.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~f  203 (284)
                      .++-+||+.=|++ |+-++..|+ +.+| .+|++-|.|+.+++.-+++++..+ .++.++-..+|+..+-.    ....|
T Consensus       108 ~~~l~vLealsAt-GlrslRya~-El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  108 EKSLRVLEALSAT-GLRSLRYAK-ELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             cCcchHHHHhhhh-hHHHHHHHH-HhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhcccccccc
Confidence            4667888887765 799999998 4555 579999999999999999999998 79999999999864322    12469


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|=++.+     .--..+|+...+.++.||+|.+...
T Consensus       185 DvIDLDPy-----Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  185 DVIDLDPY-----GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             ceEecCCC-----CCccHHHHHHHHHhhcCCEEEEEec
Confidence            99988876     3335789999999999999999663

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=1.2  Score=40.98  Aligned_cols=112  Identities=13%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc--
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY--  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f--  203 (284)
                      ...+....++|||.---|.+.|-...  ..-.+.+.||+|...++-.-+-+.+.- ..-.|.-++||....+..+...  
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~~~~  154 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPRGGR  154 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccCCCe
Confidence            35689999999997666766654311  123689999999998876554444332 2457888899976433333222  


Q ss_pred             -cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 -DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 -D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       =++|.-+.+ ..++++...++.++...|+||-.+++-.
T Consensus       155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence             245566666 4588999999999999999999998844

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.93  E-value=0.28  Score=45.15  Aligned_cols=88  Identities=19%  Similarity=0.134  Sum_probs=54.7

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.. +..+++   .|.+|+++|.+++..+.+.+    .|.     .+ +.+..+.   ..+.|+||++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~~----~g~-----~~-~~~~~e~---~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVIA----AGA-----ET-ASTAKAV---AEQCDVIITML   66 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CCC-----ee-cCCHHHH---HhcCCEEEEeC
Confidence            47999999988764 344544   78899999999987665432    341     21 2232222   24689999764


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~  238 (284)
                      ..   ...-..++   +.+...+++|.+++-
T Consensus        67 p~---~~~~~~v~~~~~~~~~~~~~g~iiid   94 (296)
T PRK11559         67 PN---SPHVKEVALGENGIIEGAKPGTVVID   94 (296)
T ss_pred             CC---HHHHHHHHcCcchHhhcCCCCcEEEE
Confidence            32   12223343   456778888877763

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=93.91  E-value=0.32  Score=45.28  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc----ccccC-CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ----VKEKL-GE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~----~~~~~-~~  202 (284)
                      .++.+|+..|+|++|..++.+|+  ..|+ +|+.++.+++..+.+++    .| . +  .++..+-.+    +.... +.
T Consensus       174 ~~~~~vlI~g~g~vg~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~~~~~~~~~~~~~~~~  243 (350)
T cd08240         174 VADEPVVIIGAGGLGLMALALLK--ALGPANIIVVDIDEAKLEAAKA----AG-A-D--VVVNGSDPDAAKRIIKAAGGG  243 (350)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----hC-C-c--EEecCCCccHHHHHHHHhCCC
Confidence            46789999999999999999999  4677 79999999887766643    46 2 1  222111101    11111 25


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-....       ...+....+.|+++|+++.-.
T Consensus       244 ~d~vid~~g~-------~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         244 VDAVIDFVNN-------SATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             CcEEEECCCC-------HHHHHHHHHHhhcCCeEEEEC
Confidence            8999843221       235788899999999998643

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.89  E-value=0.84  Score=40.30  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             CEEEEec-cCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVG-SGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQ-IVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|.+|| +|.+|.+... |++   .|.+|+.++.+++..+...+ .....+...-.++....+..   ......|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~---~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~---ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK---AGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNA---EAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh---CCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChH---HHHhcCCEEEE
Confidence            4799997 8987754322 333   67899999999887655433 22222210011222222322   22346899998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      +.--    ..-..+++.+...++ + .+++...+|+
T Consensus        75 avp~----~~~~~~l~~l~~~l~-~-~vvI~~~ngi  104 (219)
T TIGR01915        75 AVPW----DHVLKTLESLRDELS-G-KLVISPVVPL  104 (219)
T ss_pred             ECCH----HHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence            7542    445566777766664 3 5666665554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02928 oxidoreductase family protein

Probab=93.87  E-value=0.1  Score=49.80  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||.|.+|......++  ..|++|+++|.+...-........... . .......+...++..-+.+.|+|++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~--afG~~V~~~dr~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLR--PFGVKLLATRRSWTSEPEDGLLIPNGD-V-DDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCChhhhhhhcccccc-c-cccccccCcccCHHHHHhhCCEEEE
Confidence            46789999999998876555555  579999999987432111000000000 0 0000000112223334467899987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.-.  +++.+.=+=++....||||++||=
T Consensus       233 ~lPl--t~~T~~li~~~~l~~Mk~ga~lIN  260 (347)
T PLN02928        233 CCTL--TKETAGIVNDEFLSSMKKGALLVN  260 (347)
T ss_pred             CCCC--ChHhhcccCHHHHhcCCCCeEEEE
Confidence            6533  334444344677889999987654

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=93.83  E-value=0.4  Score=43.63  Aligned_cols=99  Identities=13%  Similarity=0.069  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~  202 (284)
                      ...++.+|+..| +|++|..++.+|+  ..|.+|++++.+++..+.++    ..| ...-+.....+..+ +.  .....
T Consensus       139 ~~~~~~~vlI~g~~~~~g~~~~~la~--~~g~~v~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~  211 (324)
T cd08244         139 TLTPGDVVLVTAAAGGLGSLLVQLAK--AAGATVVGAAGGPAKTALVR----ALG-ADVAVDYTRPDWPDQVREALGGGG  211 (324)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HcC-CCEEEecCCccHHHHHHHHcCCCC
Confidence            457788999999 6889999999999  46899999999988766654    355 21111111111111 11  11135


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-+..      .  ...+...+.++++|.++.-.
T Consensus       212 ~d~vl~~~g------~--~~~~~~~~~l~~~g~~v~~g  241 (324)
T cd08244         212 VTVVLDGVG------G--AIGRAALALLAPGGRFLTYG  241 (324)
T ss_pred             ceEEEECCC------h--HhHHHHHHHhccCcEEEEEe
Confidence            999984422      1  13477888999999988654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.83  E-value=0.45  Score=35.96  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCC---cEEE-EEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKS---THFD-NFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g---~~V~-~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ||.+||+|.+|..-  .......|   .+|+ ..+.+++..+...+   +.|     +.+...|..+...   ..|+||+
T Consensus         1 kI~iIG~G~mg~al--~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~---~~~-----~~~~~~~~~~~~~---~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSAL--ARGLLASGIKPHEVIIVSSRSPEKAAELAK---EYG-----VQATADDNEEAAQ---EADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHH--HHHHHHTTS-GGEEEEEEESSHHHHHHHHH---HCT-----TEEESEEHHHHHH---HTSEEEE
T ss_pred             CEEEECCCHHHHHH--HHHHHHCCCCceeEEeeccCcHHHHHHHHH---hhc-----cccccCChHHhhc---cCCEEEE
Confidence            68999999766432  22212355   7888 44999988665554   554     3444434443332   5799998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +.-    +..-.++++++ ....+|..++
T Consensus        68 av~----p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   68 AVK----PQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             EEC----HHHHHHHHHHH-hhccCCCEEE
Confidence            643    36667888888 7777777665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.83  E-value=2.1  Score=40.57  Aligned_cols=104  Identities=16%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------------------------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------------------------------  177 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------------------------------  177 (284)
                      ..+-+||.=|||. |--|.-||.   .|..+-|=+.|--|+=.+.=.+.                               
T Consensus       149 r~ki~iLvPGaGl-GRLa~dla~---~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~  224 (369)
T KOG2798|consen  149 RTKIRILVPGAGL-GRLAYDLAC---LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS  224 (369)
T ss_pred             ccCceEEecCCCc-hhHHHHHHH---hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence            4567999999995 555677776   44444444555555443333331                               


Q ss_pred             --------hcCCCCCCeEEEEeccccccccC---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          178 --------SDIEFEKRMKFVTCDIMQVKEKL---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       178 --------~~G~l~~~I~f~~~D~~~~~~~~---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                              ..+ -......-.||-.++-..-   +.||+|+.+-++ -+..+-.+.++.|.+.|+|||+.+=
T Consensus       225 ~PD~~p~~~~~-~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  225 IPDIHPASSNG-NTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             CccccccccCC-CCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEe
Confidence                    111 0122222335655543332   259999887665 2347788999999999999998654

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.83  E-value=0.59  Score=42.19  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=57.6

Q ss_pred             CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++.+|+..|+ |++|..++.+|+  ..|++|++++-+ +..    +.++.+| ...-+.....+........+.+|+|
T Consensus       141 ~~~g~~vli~g~~g~~g~~~~~la~--~~g~~v~~~~~~-~~~----~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~v  212 (319)
T cd08267         141 VKPGQRVLINGASGGVGTFAVQIAK--ALGAHVTGVCST-RNA----ELVRSLG-ADEVIDYTTEDFVALTAGGEKYDVI  212 (319)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHH--HcCCEEEEEeCH-HHH----HHHHHcC-CCEeecCCCCCcchhccCCCCCcEE
Confidence            567899999997 889999999998  578899999854 433    3444566 3211111111110001122458999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..     ......... ...++++|.++.-.
T Consensus       213 i~~~~-----~~~~~~~~~-~~~l~~~g~~i~~g  240 (319)
T cd08267         213 FDAVG-----NSPFSLYRA-SLALKPGGRYVSVG  240 (319)
T ss_pred             EECCC-----chHHHHHHh-hhccCCCCEEEEec
Confidence            85432     111222222 22489999988643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.83  E-value=0.093  Score=53.97  Aligned_cols=75  Identities=23%  Similarity=0.313  Sum_probs=49.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-----------------AANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      .+++|+.||+||.|+++...+.  ..|.+|+.+|..+                 +.++.-.+.+...|     ++|..+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~--~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILA--RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC  381 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHH--HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence            4799999999999999887766  3688999999765                 33444455666666     3443322


Q ss_pred             c--cc--ccccCCCccEEEeccc
Q 036061          193 I--MQ--VKEKLGEYDCIFLAAL  211 (284)
Q Consensus       193 ~--~~--~~~~~~~fD~V~~aa~  211 (284)
                      .  .+  +......||.||++..
T Consensus       382 ~v~~~~~~~~l~~~~DaV~latG  404 (639)
T PRK12809        382 EIGRDITFSDLTSEYDAVFIGVG  404 (639)
T ss_pred             ccCCcCCHHHHHhcCCEEEEeCC
Confidence            1  11  1111246999998754

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=93.79  E-value=0.26  Score=49.42  Aligned_cols=108  Identities=17%  Similarity=0.272  Sum_probs=79.6

Q ss_pred             CCEEEEeccCCChh--HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          131 PKKVAFVGSGPMPL--TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~--tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ...|+.+|+|-+|+  .++..|+......++.+|+-+|.|+-.-+. ....+ .+++|+++.+|.+++..+..+.|+++.
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMRKWNAPREQADIIVS  445 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEeccccccCCchhhccchHH
Confidence            56788899985554  444445433456789999999999877666 44455 678999999999998865457898763


Q ss_pred             ccccc--CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVG--MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~--~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      . +.|  .+-|---+.|..+-+.|||+|+.|=+++
T Consensus       446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             H-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            3 332  1335556799999999999998877664

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.78  E-value=0.15  Score=48.41  Aligned_cols=91  Identities=19%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||.|.+|-.....++  ..|++|.++|.++....     ....|     +.+  .+..+   -+.+.|+|++
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~e---ll~~aDiV~l  210 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLEE---LLRESDFVSL  210 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHHH---HHhhCCEEEE
Confidence            36899999999998876444444  47899999999875421     12233     122  23332   2356899987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.-.  +.+-+.-+-++....||||++|+-
T Consensus       211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN  238 (333)
T PRK13243        211 HVPL--TKETYHMINEERLKLMKPTAILVN  238 (333)
T ss_pred             eCCC--ChHHhhccCHHHHhcCCCCeEEEE
Confidence            6543  333344344678889999988765

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.75  E-value=0.39  Score=44.56  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             EEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          133 KVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       133 ~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      +|.+||.|.+|..- ..|++   .|.+|+.+|.+++..+.++    ..|.     +. ..+..++.......|+|+++..
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~~-~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLGI-----TA-RHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCCC-----ee-cCCHHHHHHhCCCCCEEEEEec
Confidence            79999999877642 22333   6789999999998766543    3442     11 2233332222223688886533


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      -   .+.-..+++.+...+++|.+++--
T Consensus        69 ~---~~~~~~v~~~i~~~l~~g~ivid~   93 (299)
T PRK12490         69 A---GEVTESVIKDLYPLLSPGDIVVDG   93 (299)
T ss_pred             C---chHHHHHHHHHhccCCCCCEEEEC
Confidence            1   234466778888888888776654

>PLN02712 arogenate dehydrogenase

Probab=93.73  E-value=0.34  Score=50.25  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=55.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|..||+|.+|.+-....+  ..|.+|+++|.++.. +.    +...|.     .+ ..|..++..  ...|+|++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----A~~~Gv-----~~-~~d~~e~~~--~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-LA----ARSLGV-----SF-FLDPHDLCE--RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-HH----HHHcCC-----EE-eCCHHHHhh--cCCCEEEE
Confidence            45679999999987764322212  257899999998543 22    334552     22 233332211  34799998


Q ss_pred             cccccCChHHHHHHHHHHH-hhcCCCcEEE
Q 036061          209 AALVGMSKEEKVKIIKHIR-KYMKDGGVLL  237 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~-~~l~pGg~lv  237 (284)
                      +.-+    ..-.++++.+. ..++||.+++
T Consensus       115 avP~----~~~~~vl~~l~~~~l~~g~iVv  140 (667)
T PLN02712        115 CTSI----ISTENVLKSLPLQRLKRNTLFV  140 (667)
T ss_pred             cCCH----HHHHHHHHhhhhhcCCCCeEEE
Confidence            7554    55677888876 5788887443

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=93.71  E-value=0.73  Score=43.89  Aligned_cols=46  Identities=17%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ  174 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~  174 (284)
                      ...++.+|+..|+ |++|..++.+|+  ..|+++++++.+++..+.+++
T Consensus       190 ~~~~g~~vlV~ga~g~iG~a~~~lak--~~G~~vv~~~~s~~~~~~~~~  236 (393)
T cd08246         190 TVKPGDNVLIWGASGGLGSMAIQLAR--AAGANPVAVVSSEEKAEYCRA  236 (393)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHH
Confidence            4567899999997 999999999999  478999999999988877765

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.68  E-value=0.29  Score=44.57  Aligned_cols=104  Identities=21%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             EEEecc-CCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          134 VAFVGS-GPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       134 VL~IGs-G~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      |..||+ |.+|.+.........  ...+++-+|++++.++.....+++.-......++...+  +....+.+.|+|++.+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHHhCCCCEEEECC
Confidence            467999 776655444322112  23789999999977776666665442111123443222  1223456789999866


Q ss_pred             cc----cCCh--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSK--------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~--------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+    |++.        +-+.++.+.+.+. .|.|++++-+
T Consensus        79 ~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~t  119 (263)
T cd00650          79 GVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVS  119 (263)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            43    2221        3367777777776 4888877755

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.68  E-value=0.4  Score=41.97  Aligned_cols=76  Identities=12%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             CCCEEEEecc-CCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------
Q 036061          130 NPKKVAFVGS-GPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------  197 (284)
Q Consensus       130 ~~~~VL~IGs-G~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------  197 (284)
                      +++++|.+|+ |.+|..... +++   .|++|+.+|.++...+.+.+.++..|   .++.++..|+.+..          
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~   77 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIA   77 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHH
Confidence            4679999997 555544332 333   68999999999987777766666555   47888999986521          


Q ss_pred             ccCCCccEEEeccc
Q 036061          198 EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 ~~~~~fD~V~~aa~  211 (284)
                      ...+..|+||.++.
T Consensus        78 ~~~~~id~vi~~ag   91 (253)
T PRK08217         78 EDFGQLNGLINNAG   91 (253)
T ss_pred             HHcCCCCEEEECCC
Confidence            11246899987664

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.61  E-value=0.41  Score=46.56  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             CCCEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-------------
Q 036061          130 NPKKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-------------  195 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-------------  195 (284)
                      ...+|..||=|=+|+ +|..+|+   .|.+|+|+||++..++.-.+     |    +..+..-+..+             
T Consensus         8 ~~~~I~ViGLGYVGLPlA~~fA~---~G~~ViG~DIn~~~Vd~ln~-----G----~~~i~e~~~~~~v~~~v~~g~lra   75 (436)
T COG0677           8 MSATIGVIGLGYVGLPLAAAFAS---AGFKVIGVDINQKKVDKLNR-----G----ESYIEEPDLDEVVKEAVESGKLRA   75 (436)
T ss_pred             CceEEEEEccccccHHHHHHHHH---cCCceEeEeCCHHHHHHHhC-----C----cceeecCcHHHHHHHHHhcCCceE
Confidence            348999999994444 3555676   89999999999998876433     1    11111111110             


Q ss_pred             --ccccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          196 --VKEKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       196 --~~~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                        -+..++..|+++++.-...      +..--....+.+++.|++|-++++.|.
T Consensus        76 Ttd~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST  129 (436)
T COG0677          76 TTDPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST  129 (436)
T ss_pred             ecChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence              1123447888877653222      112236778899999999999999984

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=93.60  E-value=0.44  Score=42.58  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----c--cc
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----K--EK  199 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~--~~  199 (284)
                      ...++.+||..| +|++|..++.+|+  ..|++|++++.+++..+.++    ..| . +.  ++..+-.+.    .  ..
T Consensus       133 ~~~~g~~vlI~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~--~~~~~~~~~~~~~~~~~~  202 (320)
T cd05286         133 PVKPGDTVLVHAAAGGVGLLLTQWAK--ALGATVIGTVSSEEKAELAR----AAG-A-DH--VINYRDEDFVERVREITG  202 (320)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHH----HCC-C-CE--EEeCCchhHHHHHHHHcC
Confidence            456789999999 6889999999998  46899999999988766654    356 2 11  211111111    1  11


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+|+-+..     .   ..+....+.|+++|.++.-.
T Consensus       203 ~~~~d~vl~~~~-----~---~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         203 GRGVDVVYDGVG-----K---DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             CCCeeEEEECCC-----c---HhHHHHHHhhccCcEEEEEe
Confidence            235999984322     1   24567788999999988643

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.58  E-value=0.19  Score=42.20  Aligned_cols=101  Identities=18%  Similarity=0.291  Sum_probs=61.1

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH---hcCC--CCCCeEEEEeccccccccCCCccEEE
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS---SDIE--FEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~---~~G~--l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +|..+|+|.+|.+......  ..|.+|+-...+++.++.=++.-.   .++.  +..++.+ +.|..+   .....|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence            6889999987765444333  377899999999976654444211   0110  1234544 455433   234679998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      ++.-.    ..-..+++++.+++++|..++.- .+|+
T Consensus        75 iavPs----~~~~~~~~~l~~~l~~~~~ii~~-~KG~  106 (157)
T PF01210_consen   75 IAVPS----QAHREVLEQLAPYLKKGQIIISA-TKGF  106 (157)
T ss_dssp             E-S-G----GGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred             ecccH----HHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence            76432    34468999999999888777654 3565

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.58  E-value=0.93  Score=43.65  Aligned_cols=76  Identities=13%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             CCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++|..|| .|.+|-+-....+  ..|..|+++|.++..                       +..+   ...+.|+||+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~~-----------------------~~~~---~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDWD-----------------------RAED---ILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcch-----------------------hHHH---HHhcCCEEEE
Confidence            447999999 8987766322222  367899999987420                       1111   1235799998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +..+    ....++++.+.. ++||.+++=
T Consensus       149 avP~----~~~~~~~~~l~~-l~~~~iv~D  173 (374)
T PRK11199        149 SVPI----HLTEEVIARLPP-LPEDCILVD  173 (374)
T ss_pred             eCcH----HHHHHHHHHHhC-CCCCcEEEE
Confidence            8765    556788888888 777665543

>PLN02712 arogenate dehydrogenase

Probab=93.56  E-value=2  Score=44.68  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+++|.+||.|.+|.+   +|++. ..|.+|+++|.++.. +.    +.+.|.     .+ ..|..++..  ...|+||
T Consensus       367 ~~~~kIgIIGlG~mG~s---lA~~L~~~G~~V~~~dr~~~~-~~----a~~~Gv-----~~-~~~~~el~~--~~aDvVI  430 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQF---LAKTMVKQGHTVLAYSRSDYS-DE----AQKLGV-----SY-FSDADDLCE--EHPEVIL  430 (667)
T ss_pred             CCCCEEEEEecCHHHHH---HHHHHHHCcCEEEEEECChHH-HH----HHHcCC-----eE-eCCHHHHHh--cCCCEEE
Confidence            46689999999987764   33321 257899999999643 22    334562     22 234333221  2479999


Q ss_pred             ecccccCChHHHHHHHHHHHh-hcCCCcEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRK-YMKDGGVLL  237 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~-~l~pGg~lv  237 (284)
                      ++.-+    ..-..+++++.. .++||.+++
T Consensus       431 LavP~----~~~~~vi~~l~~~~lk~g~ivv  457 (667)
T PLN02712        431 LCTSI----LSTEKVLKSLPFQRLKRSTLFV  457 (667)
T ss_pred             ECCCh----HHHHHHHHHHHHhcCCCCcEEE
Confidence            87554    455667777765 678877654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.55  E-value=0.47  Score=41.66  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             CCCEEEEeccCCChh-HHHHHHhhcCCCc-EEEEEeCC-------------------hHHHHHHHHHHHhcCCCCCCeEE
Q 036061          130 NPKKVAFVGSGPMPL-TSIVMAKNHLKST-HFDNFDID-------------------EAANDVARQIVSSDIEFEKRMKF  188 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~-~V~~iDid-------------------~~ai~~Ar~~~~~~G~l~~~I~f  188 (284)
                      ...+|+.||+|.+|- .+..|++   .|. +++.+|.|                   ..-.+.+.+.+++.. ..-+++.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~   95 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTA   95 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEE
Confidence            568999999995544 3334444   564 89999988                   122333444444443 1234444


Q ss_pred             EEecccc--ccccCCCccEEEecccccCChHHHHHHHHHHHhh
Q 036061          189 VTCDIMQ--VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKY  229 (284)
Q Consensus       189 ~~~D~~~--~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~  229 (284)
                      +...+.+  +...+.+||+|+.+..-   .+.+..+-+.+++.
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d~---~~~r~~l~~~~~~~  135 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTDN---FATRYLINDACVAL  135 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCCC---HHHHHHHHHHHHHc
Confidence            4444322  22235689999866431   24444444444443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02602 lactate dehydrogenase

Probab=93.50  E-value=1.2  Score=42.61  Aligned_cols=103  Identities=20%  Similarity=0.214  Sum_probs=65.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+|..||+|..|.+..+..........+.-+|++++ +-..|..+...... ...+++.. +|.    .++++.|+|++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~-~~~~~i~~~~dy----~~~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAF-LPRTKILASTDY----AVTAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhc-CCCCEEEeCCCH----HHhCCCCEEEEC
Confidence            699999999888877665442233457999999885 44667776666552 23355543 342    235678999988


Q ss_pred             ccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+    +|+..+-        .++.+.+.++ .|.|++++-+
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvt  154 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVS  154 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            765    3443221        3444555554 6788777755

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.49  E-value=0.1  Score=42.81  Aligned_cols=95  Identities=8%  Similarity=0.130  Sum_probs=52.8

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccc-cccccCCCccEEEe
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIM-QVKEKLGEYDCIFL  208 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~-~~~~~~~~fD~V~~  208 (284)
                      |+.+|+|.+|..-.  +.....|.+|+.++..+ .++.    +++.|.    ...+..+...... +.....+.||+||+
T Consensus         1 I~I~G~GaiG~~~a--~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv   73 (151)
T PF02558_consen    1 ILIIGAGAIGSLYA--ARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV   73 (151)
T ss_dssp             EEEESTSHHHHHHH--HHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred             CEEECcCHHHHHHH--HHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence            68899997654322  22113799999999998 4333    223331    0001111111111 11113357999998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.--    .+-..+++.+.+.+.|++.+++-
T Consensus        74 ~vKa----~~~~~~l~~l~~~~~~~t~iv~~  100 (151)
T PF02558_consen   74 AVKA----YQLEQALQSLKPYLDPNTTIVSL  100 (151)
T ss_dssp             -SSG----GGHHHHHHHHCTGEETTEEEEEE
T ss_pred             Eecc----cchHHHHHHHhhccCCCcEEEEE
Confidence            7421    34466899999999999655543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=93.44  E-value=0.36  Score=45.50  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~  202 (284)
                      ...++.+||..|+|.+|..++.+|+  ..|.+ |++++.+++..+.++    .+| ...-+.....+..+ +.  .....
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak--~~G~~~Vi~~~~~~~~~~~~~----~~g-~~~vv~~~~~~~~~~l~~~~~~~~  251 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGAR--IAGASRIIAVDPVPEKLELAR----RFG-ATHTVNASEDDAVEAVRDLTDGRG  251 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHH----HhC-CeEEeCCCCccHHHHHHHHcCCCC
Confidence            4577899999999999999999998  46775 999999988766654    345 21111111111111 11  11235


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++-...-       ...+....+.++++|+++.-.
T Consensus       252 vd~vld~~~~-------~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         252 ADYAFEAVGR-------AATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CCEEEEcCCC-------hHHHHHHHHHhhcCCeEEEEe
Confidence            9988743321       246788899999999988654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.42  E-value=0.2  Score=48.56  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=72.5

Q ss_pred             eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          163 DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       163 Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |..|.-+..-.=-.-+.+ + ++|+++++++.+.+...  +.||.+++.-.. =|+.++-.+.++.+.+.++|||++++|
T Consensus       256 ~~~P~YL~~e~f~~lr~~-~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R  333 (380)
T PF11899_consen  256 DCCPPYLRPENFEALRAR-L-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR  333 (380)
T ss_pred             CCCChhhcHhHHHHHhcC-C-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            555555443322222445 3 89999999999987643  579987655443 567889999999999999999999999


Q ss_pred             ecCccccccCccCCCccCCCcEE--EEEecCC--cc--eeeeEEEEee
Q 036061          240 SAKGARAFLYPVVEKHDLLDFEL--LSVFHPT--NE--VINSVVLVRK  281 (284)
Q Consensus       240 ~~~glr~~lYp~v~~~dl~gfe~--~~~~hP~--~~--v~nsvi~~r~  281 (284)
                      ++.-  .-.||..-..+--||+.  ....|+.  |.  +..|+.+++|
T Consensus       334 sa~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~DR~~~Y~~f~v~~k  379 (380)
T PF11899_consen  334 SAAV--PPWYPGRFLLERWGFDEELSAELHAGYIDRVNMYGSFHVATK  379 (380)
T ss_pred             eCCC--CCCCcccccHHhhcccHHHHHHhcCCCCCcCcccCcEEEEEe
Confidence            9632  22344322001112221  2234555  44  5667777765

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.41  E-value=0.13  Score=50.76  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=29.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      .+++|+.||+||.|+++...++  ..|..|+.+|..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~--~~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILA--RAGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCC
Confidence            5689999999999999887766  4689999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=93.38  E-value=0.56  Score=44.00  Aligned_cols=101  Identities=15%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEE-----EEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          127 GVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFD-----NFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       127 ~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~-----~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      +.-.+.+++++|-| .++-|.+..+.  ..|..|+     +++.+++.+++|+++++..|.   .|++. -|.   ....
T Consensus       149 g~l~g~k~a~vGDgNNv~nSl~~~~a--~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~---~i~~t-~d~---~eAv  219 (310)
T COG0078         149 GSLKGLKLAYVGDGNNVANSLLLAAA--KLGMDVRIATPKGYEPDPEVVEKAKENAKESGG---KITLT-EDP---EEAV  219 (310)
T ss_pred             CcccCcEEEEEcCcchHHHHHHHHHH--HhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCC---eEEEe-cCH---HHHh
Confidence            44688999999999 44444444433  5677665     679999999999999998873   56663 333   3344


Q ss_pred             CCccEEEecccccCChHHH-----------HHHHHHHHhhcCCCcEE
Q 036061          201 GEYDCIFLAALVGMSKEEK-----------VKIIKHIRKYMKDGGVL  236 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k-----------~~il~~l~~~l~pGg~l  236 (284)
                      .+-|+|+.+..+.|..+..           .++=+++....+|+++|
T Consensus       220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~if  266 (310)
T COG0078         220 KGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIF  266 (310)
T ss_pred             CCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEE
Confidence            5789999998887644332           23334566666664443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.38  E-value=0.29  Score=47.24  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             CCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ..+|..||. |-+|-+-...-+ ...+.+|+++|.+.            .+.         .+.   .....+.|+|+++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk-~~~~~~V~g~D~~d------------~~~---------~~~---~~~v~~aDlVila   58 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLR-TRMQLEVIGHDPAD------------PGS---------LDP---ATLLQRADVLIFS   58 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hcCCCEEEEEcCCc------------ccc---------CCH---HHHhcCCCEEEEe
Confidence            469999999 977765222222 12488999999851            110         011   1223578999998


Q ss_pred             ccccCChHHHHHHHHHHHhh---cCCCcEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKY---MKDGGVLL  237 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~---l~pGg~lv  237 (284)
                      .-+    ..-.++++++.+.   ++||.++.
T Consensus        59 vPv----~~~~~~l~~l~~~~~~l~~~~iVt   85 (370)
T PRK08818         59 API----RHTAALIEEYVALAGGRAAGQLWL   85 (370)
T ss_pred             CCH----HHHHHHHHHHhhhhcCCCCCeEEE
Confidence            776    6677889998876   68877654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.38  E-value=0.76  Score=37.30  Aligned_cols=89  Identities=21%  Similarity=0.217  Sum_probs=60.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~  208 (284)
                      ...||.+||-|-...-|-.|++   .|+.|+++||.+.          ..+   ..++|+.-|+++-.-.. ..-|+|+.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e---~g~dv~atDI~~~----------~a~---~g~~~v~DDitnP~~~iY~~A~lIYS   76 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAE---RGFDVLATDINEK----------TAP---EGLRFVVDDITNPNISIYEGADLIYS   76 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHH---cCCcEEEEecccc----------cCc---ccceEEEccCCCccHHHhhCccceee
Confidence            4569999999988888888888   7899999999987          111   35799999997632222 35688874


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -.    ++++-...+-.+.+.++  +.+.++.
T Consensus        77 iR----pppEl~~~ildva~aVg--a~l~I~p  102 (129)
T COG1255          77 IR----PPPELQSAILDVAKAVG--APLYIKP  102 (129)
T ss_pred             cC----CCHHHHHHHHHHHHhhC--CCEEEEe
Confidence            32    23555555666666554  4444443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=93.35  E-value=0.34  Score=44.11  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHH
Q 036061          148 VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIR  227 (284)
Q Consensus       148 ~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~  227 (284)
                      .|.+ ..+..+|+++|++++..+.|++    .|. .+..   ..+ .   ....++|+|+++.-+    ..-.++++++.
T Consensus         4 aL~~-~g~~~~v~g~d~~~~~~~~a~~----~g~-~~~~---~~~-~---~~~~~~DlvvlavP~----~~~~~~l~~~~   66 (258)
T PF02153_consen    4 ALRK-AGPDVEVYGYDRDPETLEAALE----LGI-IDEA---STD-I---EAVEDADLVVLAVPV----SAIEDVLEEIA   66 (258)
T ss_dssp             HHHH-TTTTSEEEEE-SSHHHHHHHHH----TTS-SSEE---ESH-H---HHGGCCSEEEE-S-H----HHHHHHHHHHH
T ss_pred             HHHh-CCCCeEEEEEeCCHHHHHHHHH----CCC-eeec---cCC-H---hHhcCCCEEEEcCCH----HHHHHHHHHhh
Confidence            3444 3567999999999999888775    463 2221   111 1   123468999998765    67789999999


Q ss_pred             hhcCCCcEEEE
Q 036061          228 KYMKDGGVLLV  238 (284)
Q Consensus       228 ~~l~pGg~lv~  238 (284)
                      +.+++|++++=
T Consensus        67 ~~~~~~~iv~D   77 (258)
T PF02153_consen   67 PYLKPGAIVTD   77 (258)
T ss_dssp             CGS-TTSEEEE
T ss_pred             hhcCCCcEEEE
Confidence            99999987654

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=93.32  E-value=0.33  Score=45.10  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecccc-ccc-cCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDIMQ-VKE-KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~-~~~-~~~~f  203 (284)
                      ...++.+|+..|+|++|..++.+|+  ..|.+|++++.+++..+.++    .+| ...-+.... .|..+ +.. ..+.+
T Consensus       162 ~~~~~~~vlV~g~g~vg~~~~~~a~--~~G~~vi~~~~~~~~~~~~~----~~g-~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         162 RVKPGEWVAVHGCGGVGLSAVMIAS--ALGARVIAVDIDDDKLELAR----ELG-AVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHH----HhC-CCEEEccccchhHHHHHHHHhCCCC
Confidence            3567889999999999999999999  46899999999988776664    356 211111111 12111 100 01269


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+-.  ++   .  ...+....+.|+++|.++.-.
T Consensus       235 d~vi~~--~g---~--~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         235 HVSVDA--LG---I--PETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             CEEEEc--CC---C--HHHHHHHHHHhhcCCEEEEeC
Confidence            998843  21   1  235678889999999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=93.32  E-value=0.65  Score=41.94  Aligned_cols=97  Identities=10%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccccCCCccE
Q 036061          128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~~~~~fD~  205 (284)
                      ..++.+||..|+ |++|..++.+|+  ..|++|++++.+++..+.++    .+| . +.+-....+..+ +......+|+
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~d~  211 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAK--ALGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGFDK  211 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCceE
Confidence            467899999996 889999999999  47899999999987655553    456 2 222111111111 1111246999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+-+..      .  ..+....+.++++|+++.-.
T Consensus       212 vl~~~~------~--~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         212 VLELVG------T--ATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             EEECCC------h--HHHHHHHHHhccCCEEEEEc
Confidence            884322      1  35778889999999987643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=93.31  E-value=0.46  Score=44.01  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLG  201 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~  201 (284)
                      ....++.+|+..|+|++|..++.+|++  .|.. |++++.+++..+.++    .+| ...-+....-+..+ +.  ....
T Consensus       164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-a~~v~~~~~~~~~~~i~~~~~~~  236 (345)
T cd08287         164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALAR----EFG-ATDIVAERGEEAVARVRELTGGV  236 (345)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHH----HcC-CceEecCCcccHHHHHHHhcCCC
Confidence            345778899999999999999999993  5774 999999976655554    455 21111111111111 11  1123


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+++-...     .  ...+....+.++++|.++.-.
T Consensus       237 ~~d~il~~~g-----~--~~~~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         237 GADAVLECVG-----T--QESMEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             CCCEEEECCC-----C--HHHHHHHHHhhccCCEEEEec
Confidence            5899884321     1  246788899999999998754

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.30  E-value=0.59  Score=38.31  Aligned_cols=74  Identities=16%  Similarity=0.076  Sum_probs=42.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+++|+.+|+|.+|.+......  .. +..|+.+|.+++..+...+   ..+. . .+.....|..+   ...++|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~--~~g~~~v~v~~r~~~~~~~~~~---~~~~-~-~~~~~~~~~~~---~~~~~Dvvi   86 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALA--ELGAAKIVIVNRTLEKAKALAE---RFGE-L-GIAIAYLDLEE---LLAEADLII   86 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHH--HCCCCEEEEEcCCHHHHHHHHH---HHhh-c-ccceeecchhh---ccccCCEEE
Confidence            45789999999966554333222  23 4789999999876554333   3331 0 01222233322   245799999


Q ss_pred             ecccc
Q 036061          208 LAALV  212 (284)
Q Consensus       208 ~aa~v  212 (284)
                      .+.-.
T Consensus        87 ~~~~~   91 (155)
T cd01065          87 NTTPV   91 (155)
T ss_pred             eCcCC
Confidence            77543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.28  E-value=0.76  Score=42.96  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             eccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc---
Q 036061          137 VGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV---  212 (284)
Q Consensus       137 IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v---  212 (284)
                      ||+|..|.+...+........++.-+|++++ +-..|..+-+....+..++++..+|-    .++++.|+|++.+.+   
T Consensus         2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~~daDivVitag~~rk   77 (299)
T TIGR01771         2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY----SDCKDADLVVITAGAPQK   77 (299)
T ss_pred             CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCH----HHHCCCCEEEECCCCCCC
Confidence            7999888776665442334457999999765 56667777666543334566665443    345678999988765   


Q ss_pred             -cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          213 -GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       213 -~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       +|+..+        -.++.+.+.++ .|.|++++-+
T Consensus        78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs  113 (299)
T TIGR01771        78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVAT  113 (299)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence             444322        24566666665 7889888765

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.27  E-value=0.69  Score=43.25  Aligned_cols=102  Identities=16%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH---HHhc-CC-CCCCeEEEEeccccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQI---VSSD-IE-FEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~---~~~~-G~-l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ++|..||+|.+|.. +..|++   .|..|+.++.+++.++.-++.   ...+ |. +...+++ +.|..+..  .+.+|+
T Consensus         1 MkI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~Dl   74 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV-KSAIDEVL--SDNATC   74 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE-eCCHHHHH--hCCCCE
Confidence            37999999988764 223344   678999999998765544431   1111 10 1122333 23332211  146899


Q ss_pred             EEecccccCChHHHHHHHHHHHh-hcCCCcEEEEEecCcc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRK-YMKDGGVLLVRSAKGA  244 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~-~l~pGg~lv~r~~~gl  244 (284)
                      ||++.-    ...-..+++.+.. .++++..++. ..+|+
T Consensus        75 iiiavk----s~~~~~~l~~l~~~~l~~~~~vv~-~~nGi  109 (326)
T PRK14620         75 IILAVP----TQQLRTICQQLQDCHLKKNTPILI-CSKGI  109 (326)
T ss_pred             EEEEeC----HHHHHHHHHHHHHhcCCCCCEEEE-EEcCe
Confidence            987632    2445678888887 8888876655 33555

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=93.22  E-value=0.084  Score=49.61  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc--ccc-------
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM--QVK-------  197 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~--~~~-------  197 (284)
                      +..+|.+++-+|-|-.|+.++-.+.  ..|+-|+..|.-+..-+.=+..-++....+   .-..++..  +.+       
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~--~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~---~ee~~gGYAk~ms~~~~~~q  234 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAV--RLGAIVTARDLRMFKKEQVESLGAKFLAVE---DEESAGGYAKEMSEEFIAKQ  234 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHh--hcceEEehhhhhhHHhhhhhhccccccccc---ccccCCCccccCCHHHHHHH
Confidence            3478899999999988888888887  689999999988766444333333322111   11122211  111       


Q ss_pred             -----ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          198 -----EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       198 -----~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                           ...+++|+|+..+++.-.+.+| -+-+.+..-||||.+++=-
T Consensus       235 ~~~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDl  280 (356)
T COG3288         235 AELVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDL  280 (356)
T ss_pred             HHHHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEe
Confidence                 1235799999999994444555 4888999999999987643

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.22  E-value=1.7  Score=38.87  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----------  198 (284)
                      +++++|..|++ .|+..- ++++ ...|++|+.++.+++..+...+.+...|   .++.++.+|+.+...          
T Consensus         9 ~~~~vlItGas-ggIG~~-~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          9 DDQVAVVTGAG-RGLGAA-IALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             CCCEEEEECCC-ChHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            46899999976 333322 2221 1378999999999887765555555444   478999999876432          


Q ss_pred             cCCCccEEEeccc
Q 036061          199 KLGEYDCIFLAAL  211 (284)
Q Consensus       199 ~~~~fD~V~~aa~  211 (284)
                      ..++.|+|+..+.
T Consensus        84 ~~~~id~vi~~Ag   96 (263)
T PRK07814         84 AFGRLDIVVNNVG   96 (263)
T ss_pred             HcCCCCEEEECCC
Confidence            1346899987664

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.19  E-value=1.2  Score=38.87  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----------  198 (284)
                      .+++||.+|++ .++. ..++++. ..|++|++++.+++..+.....+.. +   .++.++.+|+.+...          
T Consensus         4 ~~~~vlItGas-g~iG-~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~D~~~~~~~~~~~~~~~~   77 (251)
T PRK07231          4 EGKVAIVTGAS-SGIG-EGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G---GRAIAVAADVSDEADVEAAVAAALE   77 (251)
T ss_pred             CCcEEEEECCC-ChHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C---CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            46799999974 2332 2233321 3689999999999776655444433 3   468999999876321          


Q ss_pred             cCCCccEEEecccc
Q 036061          199 KLGEYDCIFLAALV  212 (284)
Q Consensus       199 ~~~~fD~V~~aa~v  212 (284)
                      ..+.+|+|+.++..
T Consensus        78 ~~~~~d~vi~~ag~   91 (251)
T PRK07231         78 RFGSVDILVNNAGT   91 (251)
T ss_pred             HhCCCCEEEECCCC
Confidence            12368999877643

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=93.17  E-value=0.051  Score=44.43  Aligned_cols=77  Identities=22%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             CeEEEEeccccccccC-CCccEEEecccccC-ChHH-HHHHHHHHHhhcCCCcEEEEEecCc-cccccCccCCCccCCCc
Q 036061          185 RMKFVTCDIMQVKEKL-GEYDCIFLAALVGM-SKEE-KVKIIKHIRKYMKDGGVLLVRSAKG-ARAFLYPVVEKHDLLDF  260 (284)
Q Consensus       185 ~I~f~~~D~~~~~~~~-~~fD~V~~aa~v~~-~~~~-k~~il~~l~~~l~pGg~lv~r~~~g-lr~~lYp~v~~~dl~gf  260 (284)
                      .+++..||+.+....+ ..||+||++++-.- +++. -.++++.+++.++|||++..-+..| .|.-|       ...||
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L-------~~aGF  104 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGAVRRAL-------QQAGF  104 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHHHHHHH-------HHCTE
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHHHHHHH-------HHcCC
Confidence            4567889998766654 57999999986411 1111 2789999999999999998866544 23322       23689


Q ss_pred             EEEEEecC
Q 036061          261 ELLSVFHP  268 (284)
Q Consensus       261 e~~~~~hP  268 (284)
                      ++...-..
T Consensus       105 ~v~~~~g~  112 (124)
T PF05430_consen  105 EVEKVPGF  112 (124)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEcCCC
Confidence            98655443

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.17  E-value=0.66  Score=42.38  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH----HHHhcCCCCCCeEEEEecccccc---ccCCC
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ----IVSSDIEFEKRMKFVTCDIMQVK---EKLGE  202 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~----~~~~~G~l~~~I~f~~~D~~~~~---~~~~~  202 (284)
                      .+.+||++|||+ |+-.+..|.  ..+++|+.-|.-.-.......    +.+-.. ++..+....-+-.+.+   .-...
T Consensus        86 ~~~~vlELGsGt-glvG~~aa~--~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~-~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGT-GLVGILAAL--LLGAEVVLTDLPKVVENLKFNRDKNNIALNQ-LGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCc-cHHHHHHHH--HhcceeccCCchhhHHHHHHhhhhhhhhhhh-cCCceeEEEEecCCcccHhhccCC
Confidence            577899999997 588887776  578898888876544333322    111111 2234444433333222   12234


Q ss_pred             -ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 -YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 -fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ||+|+.+ .+--..+.-..++.-++..|..++++.+.+
T Consensus       162 ~~Dlilas-Dvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  162 PFDLILAS-DVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             cccEEEEe-eeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence             8998744 332234566778889999999999666654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.16  E-value=0.4  Score=37.40  Aligned_cols=64  Identities=17%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++||.||+|+.+..-+..  ....|++|+-+..+.+..+             +++++..-+.   ..++..+|+||.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~--Ll~~gA~v~vis~~~~~~~-------------~~i~~~~~~~---~~~l~~~~lV~~   66 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARL--LLEAGAKVTVISPEIEFSE-------------GLIQLIRREF---EEDLDGADLVFA   66 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHH--HCCCTBEEEEEESSEHHHH-------------TSCEEEESS----GGGCTTESEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHH--HHhCCCEEEEECCchhhhh-------------hHHHHHhhhH---HHHHhhheEEEe
Confidence            367899999999765544333  3467899999998871111             2567765553   345678999996


Q ss_pred             cc
Q 036061          209 AA  210 (284)
Q Consensus       209 aa  210 (284)
                      +.
T Consensus        67 at   68 (103)
T PF13241_consen   67 AT   68 (103)
T ss_dssp             -S
T ss_pred             cC
Confidence            64

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.11  E-value=0.54  Score=41.37  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             CCCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      -.+++||.||+|.+|...+ .|.+   .|++|+.|+.+.  .+...+++.. |    .+++...+..  ..++..+|+||
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~--~~~l~~l~~~-~----~i~~~~~~~~--~~~l~~adlVi   75 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL--TENLVKLVEE-G----KIRWKQKEFE--PSDIVDAFLVI   75 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC--CHHHHHHHhC-C----CEEEEecCCC--hhhcCCceEEE
Confidence            4678999999998766533 3333   678999986542  1222232222 3    4666544332  23456799988


Q ss_pred             ecc
Q 036061          208 LAA  210 (284)
Q Consensus       208 ~aa  210 (284)
                      .+.
T Consensus        76 aaT   78 (202)
T PRK06718         76 AAT   78 (202)
T ss_pred             EcC
Confidence            653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.11  E-value=0.32  Score=48.14  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=47.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|+.+|+|..|++...+..  ..|+.|++.|.++...   .+.....|     |++..+...  ...+.++|+|+.
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~   80 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVT   80 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEe
Confidence            34678999999977876554444  4788999999775432   23334445     456555321  122347999998


Q ss_pred             cccccC
Q 036061          209 AALVGM  214 (284)
Q Consensus       209 aa~v~~  214 (284)
                      +..|..
T Consensus        81 Spgi~~   86 (473)
T PRK00141         81 SPGWRP   86 (473)
T ss_pred             CCCCCC
Confidence            887743

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.10  E-value=0.35  Score=45.49  Aligned_cols=91  Identities=11%  Similarity=0.055  Sum_probs=56.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|..||.|.+|......++  ..|++|.++|.+++..         .+ .   ..+..  ..++..-+.+.|+|++
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~--afG~~V~~~~~~~~~~---------~~-~---~~~~~--~~~l~e~l~~aDvvv~  196 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQ--TWGFPLRCWSRSRKSW---------PG-V---QSFAG--REELSAFLSQTRVLIN  196 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCCCCC---------CC-c---eeecc--cccHHHHHhcCCEEEE
Confidence            35789999999988865444333  3799999999875431         12 1   11211  1123333457899986


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ..-  .+++.+.-+-+...+.||||++||-
T Consensus       197 ~lP--lt~~T~~li~~~~l~~mk~ga~lIN  224 (312)
T PRK15469        197 LLP--NTPETVGIINQQLLEQLPDGAYLLN  224 (312)
T ss_pred             CCC--CCHHHHHHhHHHHHhcCCCCcEEEE
Confidence            543  2445554445678889999986643

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=93.10  E-value=0.42  Score=43.67  Aligned_cols=95  Identities=12%  Similarity=0.057  Sum_probs=62.6

Q ss_pred             CCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc--ccccc-cCCCccE
Q 036061          130 NPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI--MQVKE-KLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~--~~~~~-~~~~fD~  205 (284)
                      .+.+||..|+ |++|..++.+|+  ..|.+|++++.+++..+.++    .+| . +.+ +...+.  ..+.. ..+.+|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~  216 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILA--KLGYEVVASTGKADAADYLK----KLG-A-KEV-IPREELQEESIKPLEKQRWAG  216 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHH--HCCCeEEEEecCHHHHHHHH----HcC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence            4679999998 899999999998  46889999999988766654    456 2 111 111110  10100 1135899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+-...      .  ..++...+.|+++|+++.-..
T Consensus       217 vld~~g------~--~~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         217 AVDPVG------G--KTLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             EEECCc------H--HHHHHHHHHhhcCCEEEEEee
Confidence            874322      1  356788899999999988653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=93.09  E-value=0.47  Score=43.88  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----c--cc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----K--EK  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~--~~  199 (284)
                      ...++.+||-.|+|.+|..++.+|+  ..|.+ |++++.+++..+.+++    .| ..   .++..+-.++    .  ..
T Consensus       162 ~~~~g~~VlV~g~g~vg~~~~~la~--~~g~~~v~~~~~s~~~~~~~~~----~g-~~---~~~~~~~~~~~~~i~~~~~  231 (343)
T cd08235         162 GIKPGDTVLVIGAGPIGLLHAMLAK--ASGARKVIVSDLNEFRLEFAKK----LG-AD---YTIDAAEEDLVEKVRELTD  231 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hC-Cc---EEecCCccCHHHHHHHHhC
Confidence            4578899999999989999999998  46888 9999999888776643    45 21   2222111111    0  11


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+|+-...-       ...+....+.|+++|.++.-.
T Consensus       232 ~~~vd~vld~~~~-------~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         232 GRGADVVIVATGS-------PEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             CcCCCEEEECCCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence            2358999854331       246778889999999988754

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK09242 tropinone reductase; Provisional

Probab=93.07  E-value=2.3  Score=37.67  Aligned_cols=80  Identities=11%  Similarity=0.070  Sum_probs=51.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------c
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------E  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------~  198 (284)
                      .+++++..|++ .|+... ++++ ...|++|+.++.+++..+...+.+.... -..++.++.+|+.+..          .
T Consensus         8 ~~k~~lItGa~-~gIG~~-~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGAS-KGIGLA-IAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVSDDEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCC-chHHHH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            46799999974 233322 2221 2378999999999887766555554431 1247889999987522          2


Q ss_pred             cCCCccEEEecccc
Q 036061          199 KLGEYDCIFLAALV  212 (284)
Q Consensus       199 ~~~~fD~V~~aa~v  212 (284)
                      ..+..|+|+.++..
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence            24578999877643

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.05  E-value=1.7  Score=39.25  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+|+..|+ |++|..++.+|+  ..|++|.+++.+++..+.+++    +|. . . .+...+  +...  +.+|+
T Consensus       129 ~~~~~~~vli~g~~~~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~----~g~-~-~-~~~~~~--~~~~--~~~d~  195 (305)
T cd08270         129 GPLLGRRVLVTGASGGVGRFAVQLAA--LAGAHVVAVVGSPARAEGLRE----LGA-A-E-VVVGGS--ELSG--APVDL  195 (305)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-c-E-EEeccc--cccC--CCceE
Confidence            3345899999998 788999899998  478999999998877666544    552 2 1 111111  1111  36899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++-...      .  ..+....+.|+++|+++.-.
T Consensus       196 vl~~~g------~--~~~~~~~~~l~~~G~~v~~g  222 (305)
T cd08270         196 VVDSVG------G--PQLARALELLAPGGTVVSVG  222 (305)
T ss_pred             EEECCC------c--HHHHHHHHHhcCCCEEEEEe
Confidence            884322      1  25688899999999988654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=93.04  E-value=0.43  Score=43.50  Aligned_cols=96  Identities=13%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------cc
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------EK  199 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~~  199 (284)
                      ...++.+||..|+ |.+|..++.+|+  ..|++++.+.-+++..+..+    ..| ..   .++..+-.++.      ..
T Consensus       136 ~~~~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~~~~~~~i~~~~~  205 (324)
T cd08292         136 GVKPGQWLIQNAAGGAVGKLVAMLAA--ARGINVINLVRRDAGVAELR----ALG-IG---PVVSTEQPGWQDKVREAAG  205 (324)
T ss_pred             CCCCCCEEEEcccccHHHHHHHHHHH--HCCCeEEEEecCHHHHHHHH----hcC-CC---EEEcCCCchHHHHHHHHhC
Confidence            4577899999875 789999999999  47888888877766544443    346 21   22211111111      11


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+|+-...      .  ..+....+.++++|+++.-.
T Consensus       206 ~~~~d~v~d~~g------~--~~~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         206 GAPISVALDSVG------G--KLAGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             CCCCcEEEECCC------C--hhHHHHHHhhcCCcEEEEEe
Confidence            135999984322      1  23567788999999988653

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.00  E-value=2.1  Score=37.75  Aligned_cols=79  Identities=14%  Similarity=0.057  Sum_probs=52.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------  198 (284)
                      -.+++|+..|++ .++.. .++++. ..|++|+.++.+++.++...+.++..|   .++.++.+|+.+...         
T Consensus         9 ~~~k~ilItGas-~~IG~-~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~   83 (256)
T PRK06124          9 LAGQVALVTGSA-RGLGF-EIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARID   83 (256)
T ss_pred             CCCCEEEEECCC-chHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHH
Confidence            357899999985 23332 233321 369999999999887766655555555   368899999876321         


Q ss_pred             -cCCCccEEEecccc
Q 036061          199 -KLGEYDCIFLAALV  212 (284)
Q Consensus       199 -~~~~fD~V~~aa~v  212 (284)
                       ..+..|.|+.++..
T Consensus        84 ~~~~~id~vi~~ag~   98 (256)
T PRK06124         84 AEHGRLDILVNNVGA   98 (256)
T ss_pred             HhcCCCCEEEECCCC
Confidence             23467988866543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
3fpe_A	298	Crystal Structure Of Mtnas In Complex With Thermoni		1e-10
3o31_A	296	E81q Mutant Of Mtnas In Complex With A Reaction Int		3e-10
3fpg_A	298	Crystal Structure Of E81q Mutant Of Mtnas Length =		3e-10

>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With Thermonicotianamine Length = 298

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85  LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
           LE+E A    ++  P   L  F +Y  Y++L   E  +         ++  F+G GP+PL
Sbjct: 80  LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
           T I+++  H+     +  +I+    +++R+++   +  +  +  +T D   V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
            + +AAL     E K ++ ++I +Y+     ++ R+  G RA LY  V   D+  F    
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 VFHPTNEVINSVVLVRK 281
           V  P+ +V N+ VLV K
Sbjct: 247 VVLPSGKVNNTSVLVFK 263

>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction Intermediate Length = 296

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85  LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
           L++E A    ++  P   L  F +Y  Y++L   E  +         ++  F+G GP+PL
Sbjct: 79  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 135
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
           T I+++  H+     +  +I+    +++R+++   +  +  +  +T D   V + L E+D
Sbjct: 136 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 189
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
            + +AAL     E K ++ ++I +Y+     ++ R+  G RA LY  V   D+  F    
Sbjct: 190 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 265 VFHPTNEVINSVVLVRK 281
           V  P+ +V N+ VLV K
Sbjct: 246 VVLPSGKVNNTSVLVFK 262

>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas Length = 298

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85  LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
           L++E A    ++  P   L  F +Y  Y++L   E  +         ++  F+G GP+PL
Sbjct: 80  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
           T I+++  H+     +  +I+    +++R+++   +  +  +  +T D   V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
            + +AAL     E K ++ ++I +Y+     ++ R+  G RA LY  V   D+  F    
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 VFHPTNEVINSVVLVRK 281
           V  P+ +V N+ VLV K
Sbjct: 247 VVLPSGKVNNTSVLVFK 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-67
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-05
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-04
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-04
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	3e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	6e-04

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score =  211 bits (537), Expect = 2e-67
 Identities = 56/275 (20%), Positives = 116/275 (42%), Gaps = 20/275 (7%)

Query: 15  AELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKL--CTPPSSIDIKTLPQ-----EV 67
             +   ++ +I + +  +         + +   L ++      S+ID ++        E+
Sbjct: 3   CYIYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEM 62

Query: 68  QEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENG 127
                 +          LE+E A    ++  P   L  F +Y  Y++L   E  +     
Sbjct: 63  NHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALG---R 119

Query: 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK 187
               ++  F+G GP+PLT I+++  H+     +  +I+    +++R+++      +  + 
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGL-GVD-GVN 175

Query: 188 FVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF 247
            +T D   +     E+D + +AAL     E K ++ ++I +Y+     ++ R+  G RA 
Sbjct: 176 VITGDETVID--GLEFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAI 229

Query: 248 LYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKP 282
           LY  V   D+  F    V  P+ +V N+ VLV K 
Sbjct: 230 LYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKC 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 78/312 (25%)

Query: 9   NESHIPAELLIARVMQIHASIANLESLKPS------------KQV---NSLFTHLVKLCT 53
           N++ + A+  ++R+         L  L+P+            K     +   ++ V+ C 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CK 179

Query: 54  PPSSI---DIKTL--PQEVQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPY 108
               I   ++K    P+ V EM +    L  + +       +   +     ++++     
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWT-SRSDHSSNIKLRIHSIQ---- 231

Query: 109 YGNYVK--LANLEYR----ILDENGVVNPKKV-AF-------VGSGPMPLTSIVMAKN-- 152
               ++  L +  Y     +L    V N K   AF       + +    +T  + A    
Sbjct: 232 --AELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 153 HLKSTHF-DNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI---FL 208
           H+   H       DE  + +               K++ C      + L           
Sbjct: 288 HISLDHHSMTLTPDEVKSLLL--------------KYLDCRP----QDLPREVLTTNPRR 329

Query: 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHP 268
            +++  S  + +    + +    D    L    + +   L P   +     F+ LSVF P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSLNVLEPAEYRK---MFDRLSVF-P 382

Query: 269 TNEVINSVVLVR 280
            +  I +++L  
Sbjct: 383 PSAHIPTILLSL 394

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 8/104 (7%)

Query: 137 VGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV 196
            G+G     +  +          D  +  +   + A++ ++         KF+   +   
Sbjct: 100 CGAGI-GRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETA 152

Query: 197 KEKLGEYDCIFLAALVG-MSKEEKVKIIKHIRKYMKDGGVLLVR 239
                 YD I +      ++  + VK  KH ++ +   G +  +
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 137 VGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           +  G     + V+ ++  L       +D+    +   + I + D+    R++F   +++ 
Sbjct: 186 LAGGHGTYLAQVLRRHPQLTGQ---IWDLPTTRDAARKTIHAHDLG--GRVEFFEKNLLD 240

Query: 196 -VKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
               + G  D + L   L      E  ++I H    +K GG LL+
Sbjct: 241 ARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI 285

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 137 VGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195
           + +        V   N + +       D      +VA++          R   +      
Sbjct: 172 ISASHGLFGIAVAQHNPNAEIF---GVDWASVL-EVAKENARIQ-GVASRYHTIAGS-AF 225

Query: 196 VKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
             +   +YD + L   L         ++++ I+  +   G ++V
Sbjct: 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIV 269

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 14/112 (12%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 130 NPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKF 188
           +PK++  +G       +  +  N  ++ T     D+ +   ++ R+  +      +R+  
Sbjct: 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVT---IVDLPQQL-EMMRKQTAGL-SGSERIHG 233

Query: 189 VTCDIMQVKEKLGE-YDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
              +++         +D ++++  L   S+EE + I+  + + +     + +
Sbjct: 234 HGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 137 VGSGPMPLTSIVMAKN-HLKSTHFDNFD----IDEAANDVARQIVSSDIEFEKRMKFVTC 191
           VG G   +++ ++     L ST     +    ID    + A + V+       RM+ +  
Sbjct: 197 VGGGIGDISAAMLKHFPELDST---ILNLPGAIDLVNENAAEKGVAD------RMRGIAV 247

Query: 192 DIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
           DI   KE   E D +     L   +++    + K     M+ GG LL+
Sbjct: 248 DIY--KESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 293

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 144 LTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY 203
           L S  + +       F   D+ E   ++A+     +     ++K++  D  +   +  +Y
Sbjct: 57  LLSAFLME-KYPEATFTLVDMSEKMLEIAKNRFRGN----LKVKYIEADYSKYDFE-EKY 110

Query: 204 DCIFLA-ALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238
           D +  A ++  +  E+K ++ K     +K+ G+ + 
Sbjct: 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.76
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.72
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.69
3ocj_A	305	Putative exported protein; structural genomics, PS	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.66
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.65
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.65
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.65
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.65
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.65
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.65
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.64
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.64
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.64
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.64
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.63
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.63
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.63
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.62
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.62
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.61
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.61
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.61
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.61
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.61
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.6
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.6
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.6
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.6
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.59
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.59
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.59
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.59
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.58
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.58
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.58
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.58
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.57
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.57
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.57
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.57
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.57
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.56
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.56
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.56
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.55
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.55
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.55
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.55
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.54
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.54
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.54
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.54
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.54
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.53
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.53
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.53
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.53
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.53
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.52
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.52
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.52
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.52
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.52
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.52
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.52
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.51
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.51
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.5
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.5
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.5
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.5
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.5
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.5
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.5
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.49
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.49
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.49
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.49
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.49
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.49
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.49
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.48
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.48
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.48
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.48
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.48
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.48
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.48
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.48
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.48
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.48
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.47
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.47
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.47
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.46
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.46
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.46
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.46
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.45
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.45
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.44
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.44
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.44
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.44
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.44
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.44
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.44
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.44
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.44
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.44
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.43
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.43
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.43
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.43
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.43
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.43
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.43
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.42
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.42
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.42
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.42
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.42
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.42
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.42
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.42
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.42
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.41
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.41
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.41
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.41
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.41
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.41
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.41
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.41
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.4
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.4
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.4
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.4
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.39
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.39
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.39
2o07_A	304	Spermidine synthase; structural genomics, structur	99.38
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.38
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.38
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.38
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.37
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.37
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.36
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.36
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.36
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.36
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.35
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.35
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.35
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.35
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.35
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.34
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.34
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.34
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.33
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.33
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.32
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.32
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.32
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.29
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.28
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.28
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.28
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.26
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.26
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.26
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.25
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.25
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.24
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.24
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.24
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.23
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.23
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.22
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.22
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.22
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.21
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.21
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.21
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.2
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.19
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.18
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.16
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.16
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.16
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.15
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.14
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.13
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.13
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.13
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.13
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.13
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.12
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.11
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.11
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.06
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.06
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.04
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.02
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.02
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.0
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.0
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.99
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.99
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.99
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.98
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.97
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.96
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.96
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.93
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.88
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.87
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.87
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.86
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.85
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.83
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.81
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.77
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.77
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.74
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.69
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.67
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.66
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.64
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.63
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.51
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.51
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.51
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.41
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.39
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.18
3lkd_A	542	Type I restriction-modification system methyltrans	98.18
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.13
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.12
3khk_A	544	Type I restriction-modification system methylation	98.11
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.98
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.97
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.97
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.96
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.9
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.82
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.82
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.8
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.78
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.78
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.77
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.75
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.7
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.69
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.69
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.69
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.62
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.6
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.59
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.59
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.58
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.57
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.57
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.56
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.54
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.53
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.52
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.52
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.51
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.5
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.49
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.48
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.47
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.47
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.47
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.47
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.47
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.46
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.45
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.44
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.43
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.39
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.39
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.39
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.38
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.37
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.37
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.36
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.36
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.35
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.33
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.32
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.27
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.26
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.25
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.25
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.24
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.24
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.22
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.2
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.18
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.18
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.17
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.16
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.15
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.15
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.13
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.1
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.1
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.1
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.08
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.08
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.08
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.07
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.07
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.06
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.05
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.04
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.04
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.03
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.02
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.02
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.01
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.99
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.96
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.92
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.92
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.91
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.88
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.85
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.84
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.82
3ufb_A	530	Type I restriction-modification system methyltran	96.8
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.77
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.76
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.76
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.72
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.69
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.69
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.67
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.65
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.64
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.64
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.63
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.62
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.62
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.6
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.58
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.58
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.55
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.55
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.54
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.52
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.5
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.49
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.47
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.45
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.42
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.4
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.37
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.37
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.35
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.33
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.32
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.32
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.29
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.26
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.26
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.25
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.21
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.17
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.13
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.12
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.12
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.11
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.09
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.05
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.01
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.98
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.95
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	95.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.91
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.91
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.9
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.88
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.86
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.83
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.81
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.81
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.8
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.8
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.77
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.76
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.76
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.75
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.73
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.7
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.65
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.64
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.61
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.58
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.53
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.52
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.52
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.52
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.48
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.45
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.43
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.41
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.41
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.37
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.37
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	95.33
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.33
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.32
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.3
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.28
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.22
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.18
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.18
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.14
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.12
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.12
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.12
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.11
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.1
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.09
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.03
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.0
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.98
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.96
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.87
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	94.85
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.84
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.83
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.83
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.81
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.81

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=100.00  E-value=9e-53  Score=388.33  Aligned_cols=253  Identities=21%  Similarity=0.340  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh---ccC-Cccc---ccccCchhHHHHHHHHHHHHHHhhHhhhHHH
Q 036061           17 LLIARVMQIHASIANLESLKPSKQVNSLFTHLVKL---CTP-PSSI---DIKTLPQEVQEMRESLIVLCGRAEGLLELEF   89 (284)
Q Consensus        17 ~~i~~i~~~~~~~~~l~~l~p~~~vn~lf~~Lv~l---c~~-~~~~---~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~   89 (284)
                      ....||.++|+.|+++++|+|++.||+||++|++|   |.. +.+.   +...-+++++++++.++++|+++++.+|.+|
T Consensus         5 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~w   84 (298)
T 3fpf_A            5 IYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEK   84 (298)
T ss_dssp             HHHHHHHHHHHHHGGGTTCGGGCCTTTTHHHHHHHHHHHTCTTSCHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcccCCcCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999966666   442 3332   3333458999999999999999999999999


Q ss_pred             HHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH
Q 036061           90 ATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN  169 (284)
Q Consensus        90 a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai  169 (284)
                      |++++++++||++++.||||+||+++++.|+.+   ..+.++++|||||||++|+|++.+|+  .+|++|+|||+|++++
T Consensus        85 a~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~l---a~l~~g~rVLDIGcG~G~~ta~~lA~--~~ga~V~gIDis~~~l  159 (298)
T 3fpf_A           85 AQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPLTGILLSH--VYGMRVNVVEIEPDIA  159 (298)
T ss_dssp             HHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHH---TTCCTTCEEEEECCCSSCHHHHHHHH--TTCCEEEEEESSHHHH
T ss_pred             HHHHhccCChHHhhccCCCcccHHHHHHHHHHH---cCCCCcCEEEEECCCccHHHHHHHHH--ccCCEEEEEECCHHHH
Confidence            999999999999999999999999999999864   36789999999999999999999998  5799999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccC
Q 036061          170 DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLY  249 (284)
Q Consensus       170 ~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lY  249 (284)
                      +.|++++++.| + ++|+|+++|+.+++  .+.||+||+++.+    ++|.++++++.+.|||||+|++++++|+|+++|
T Consensus       160 ~~Ar~~~~~~g-l-~~v~~v~gDa~~l~--d~~FDvV~~~a~~----~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~  231 (298)
T 3fpf_A          160 ELSRKVIEGLG-V-DGVNVITGDETVID--GLEFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILY  231 (298)
T ss_dssp             HHHHHHHHHHT-C-CSEEEEESCGGGGG--GCCCSEEEECTTC----SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSS
T ss_pred             HHHHHHHHhcC-C-CCeEEEECchhhCC--CCCcCEEEECCCc----cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhcc
Confidence            99999999999 6 89999999999865  3689999988775    789999999999999999999999999999999


Q ss_pred             ccCCCccCCCcEEEEEecCCcceeeeEEEEeec
Q 036061          250 PVVEKHDLLDFELLSVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       250 p~v~~~dl~gfe~~~~~hP~~~v~nsvi~~r~~  282 (284)
                      |.+++.++.||+.+.+.||+++|+||||++||.
T Consensus       232 ~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          232 APVSDDDITGFRRAGVVLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             CCCCTGGGTTEEEEEEECCCTTCCCEEEEEEEC
T ss_pred             ccCChhhhhhhhheeEECCCCCcCcEEEEEEcc
Confidence            999999999999999999999999999999993

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.76  E-value=8.9e-18  Score=151.66  Aligned_cols=126  Identities=15%  Similarity=0.215  Sum_probs=101.6

Q ss_pred             CCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 036061          107 PYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKR  185 (284)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~  185 (284)
                      |+|+....++..   + .....+++.+|||||||+ |..++.||++. .+|++|+|||+|++|++.|++.+...| ...+
T Consensus        51 P~Y~~~~~~i~~---l-~~~~~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~~  124 (261)
T 4gek_A           51 PGYSNIISMIGM---L-AERFVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTP  124 (261)
T ss_dssp             TTHHHHHHHHHH---H-HHHHCCTTCEEEEETCTT-THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSSC
T ss_pred             CCHHHHHHHHHH---H-HHHhCCCCCEEEEEeCCC-CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCce
Confidence            776665555432   2 222357889999999997 56667788743 368999999999999999999999998 6889


Q ss_pred             eEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          186 MKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       186 I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+++|+.+++.  .+||+|++...+ .++.+++.++++++++.|||||+|++..
T Consensus       125 v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          125 VDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            9999999987654  579999876544 5577889999999999999999999864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.72  E-value=1.4e-16  Score=134.76  Aligned_cols=107  Identities=20%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+...| + .+++++++|+.+.+. .+.||+|
T Consensus        29 ~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~-~~~~D~v  101 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGN-GRNSLYLAA---NGYDVDAWDKNAMSIANVERIKSIEN-L-DNLHTRVVDLNNLTF-DRQYDFI  101 (199)
T ss_dssp             TTSCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECCGGGCCC-CCCEEEE
T ss_pred             hccCCCeEEEEcCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhCC-C-CCcEEEEcchhhCCC-CCCceEE
Confidence            345778999999997 566778888   48899999999999999999999888 3 469999999988665 5689999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..... .++.++..++++++.+.|+|||.+++-+
T Consensus       102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            976544 4566688999999999999999987755

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.69  E-value=1.1e-16  Score=140.86  Aligned_cols=106  Identities=13%  Similarity=0.263  Sum_probs=92.3

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEeccccccccC--CCccEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEKL--GEYDCI  206 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~~--~~fD~V  206 (284)
                      ++.+|||||||+ |+++++||++..++++|+++|+|+++++.|++++++.| +. ++|+|+++|+.+....+  +.||+|
T Consensus        56 ~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           56 GSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-YSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             TCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            345999999996 89999999854568999999999999999999999999 67 79999999998876554  579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..    ....++++.+.+.|+|||++++.+.
T Consensus       134 ~~d~~~----~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          134 FGQVSP----MDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             EECCCT----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             EEcCcH----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            988654    6677899999999999999999763

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.68  E-value=1.9e-16  Score=144.60  Aligned_cols=111  Identities=15%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..++.+|....++++|+++|+|+.+++.|++++...| +.++++|+++|+.+++.+ +.||+|
T Consensus       115 ~l~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~fD~v  191 (305)
T 3ocj_A          115 HLRPGCVVASVPCGW-MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDAWKLDTR-EGYDLL  191 (305)
T ss_dssp             HCCTTCEEEETTCTT-CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCGGGCCCC-SCEEEE
T ss_pred             hCCCCCEEEEecCCC-CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECchhcCCcc-CCeEEE
Confidence            357889999999997 56667775324789999999999999999999999999 678899999999987766 789999


Q ss_pred             Eecccc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..... ++ +.+...++++++.+.|+|||++++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            976543 44 44555579999999999999999976

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.67  E-value=1.8e-16  Score=137.03  Aligned_cols=108  Identities=13%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC------C----CCCCeEEEEeccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI------E----FEKRMKFVTCDIMQV  196 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G------~----l~~~I~f~~~D~~~~  196 (284)
                      ...++.+|||+|||+ |..+.+||+   .|++|+|+|+|++|++.|++.....+      .    ...+++|+++|+.++
T Consensus        19 ~~~~~~~vLD~GCG~-G~~~~~la~---~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           19 NVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             CCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             ccCCCCEEEEeCCCC-cHhHHHHHH---CCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            456789999999997 677788998   48899999999999999999764310      0    025899999999987


Q ss_pred             cccC-CCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          197 KEKL-GEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       197 ~~~~-~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +... +.||+|+... +..++.+++.++++++++.|||||++++
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            7653 6899999644 3356777888999999999999998433

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.66  E-value=1.3e-15  Score=131.22  Aligned_cols=152  Identities=16%  Similarity=0.104  Sum_probs=110.2

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ......++.+|||||||+ |..+..+++...++.+|+++|+|+++++.|++.+...| + .+++|+++|+.+.+...+.|
T Consensus        31 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~f  107 (219)
T 3dh0_A           31 KEFGLKEGMTVLDVGTGA-GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-L-KNVEVLKSEENKIPLPDNTV  107 (219)
T ss_dssp             HHHTCCTTCEEEESSCTT-CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECBTTBCSSCSSCE
T ss_pred             HHhCCCCCCEEEEEecCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEecccccCCCCCCCe
Confidence            344567889999999998 45566777743467899999999999999999999988 4 48999999998877655679


Q ss_pred             cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecCccccc----cCccCCCccC------CCcEEEEEecCCcce
Q 036061          204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF----LYPVVEKHDL------LDFELLSVFHPTNEV  272 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~----lYp~v~~~dl------~gfe~~~~~hP~~~v  272 (284)
                      |+|+....+ .+  .+...+++++.+.|+|||.+++.........    .......+++      .||++.....-.+  
T Consensus       108 D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--  183 (219)
T 3dh0_A          108 DFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK--  183 (219)
T ss_dssp             EEEEEESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT--
T ss_pred             eEEEeehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC--
Confidence            999976554 33  4668899999999999999999763211111    0111122221      6999987765433  


Q ss_pred             eeeEEEEeec
Q 036061          273 INSVVLVRKP  282 (284)
Q Consensus       273 ~nsvi~~r~~  282 (284)
                      ..-.+++||+
T Consensus       184 ~~~~~~~~k~  193 (219)
T 3dh0_A          184 YCFGVYAMIV  193 (219)
T ss_dssp             TEEEEEEECC
T ss_pred             ceEEEEEEec
Confidence            2346677763

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.66  E-value=6.7e-16  Score=133.94  Aligned_cols=107  Identities=15%  Similarity=0.230  Sum_probs=90.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-----CCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-----GEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-----~~f  203 (284)
                      .++.+|||||||+ |..++++|++..++++|+++|+|+++++.|++++++.| +.++++++++|+.+....+     +.|
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           57 QGARNILEIGTLG-GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             hCCCEEEEecCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            4679999999997 67888898833338999999999999999999999999 7888999999997654332     469


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+||+++..    +...++++.+.+.|+|||++++.+.
T Consensus       135 D~v~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          135 DFIFIDADK----QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             SEEEECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CEEEEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999987653    6677899999999999999998764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.65  E-value=1.6e-15  Score=127.77  Aligned_cols=110  Identities=14%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~  205 (284)
                      ...++.+|||+|||+ |..++.+|+   .+.+|+|+|+|+++++.|+++++..| + ++++|+++|..++... .+.||+
T Consensus        19 ~~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~~~~~l~~~~~~~fD~   92 (185)
T 3mti_A           19 VLDDESIVVDATMGN-GNDTAFLAG---LSKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELILDGHENLDHYVREPIRA   92 (185)
T ss_dssp             TCCTTCEEEESCCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEESCGGGGGGTCCSCEEE
T ss_pred             hCCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCcHHHHHhhccCCcCE
Confidence            457889999999997 567788888   38999999999999999999999999 5 7899999888765422 346999


Q ss_pred             EEecc-cccC-------ChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          206 IFLAA-LVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       206 V~~aa-~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      |+++. .+..       ..+...++++++.+.|||||++++....
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            98762 3222       3366778999999999999999887643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.65  E-value=1.7e-15  Score=129.49  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++++...| +. +++|+++|+.+.+ ..+.||+|+..
T Consensus        65 ~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~-~~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGP-GLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELK-LE-NIEPVQSRVEEFP-SEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-CS-SEEEEECCTTTSC-CCSCEEEEECS
T ss_pred             CCCeEEEECCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEecchhhCC-ccCCcCEEEEe
Confidence            478999999997 555677776 4578999999999999999999999998 44 4999999998765 23579999965


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEEEE---EecCCcceeeeEEEEeec
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS---VFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~~~---~~hP~~~v~nsvi~~r~~  282 (284)
                      ..     .+..++++.+.+.|+|||.+++..+..-..-+    . .-..||++..   ..+|...-..++++++|.
T Consensus       140 ~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~----~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          140 AF-----ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEI----A-LLPEEYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             CS-----SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHH----H-TSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             cc-----CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHH----H-HHhcCCceeeeeeeccCCCCCceEEEEEEec
Confidence            43     45678999999999999999998542111100    0 0123898765   367877777888888874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=1.2e-15  Score=135.77  Aligned_cols=107  Identities=18%  Similarity=0.270  Sum_probs=91.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~fD~  205 (284)
                      .++.+|||||||+ |..++.+|+...++++|+++|+|+++++.|++++++.| +.++|+|+++|+.+.....   +.||+
T Consensus        62 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           62 TQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             cCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            4689999999997 67888899833338999999999999999999999999 6789999999998754432   37999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+++..    .....+++.+.+.|+|||+|++.+.
T Consensus       140 V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDADK----PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECSCG----GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECCch----HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9987653    6778899999999999999999774

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.65  E-value=8e-16  Score=138.14  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---------cC------CCCCCeEEEEecc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---------DI------EFEKRMKFVTCDI  193 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---------~G------~l~~~I~f~~~D~  193 (284)
                      .++.+|||+|||+ |..+.+||+   .|++|+|||+|+.|++.|++....         .+      ....+|+|+++|+
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~---~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFAD---RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHH---CCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            5778999999997 677889998   689999999999999999876531         00      0125899999999


Q ss_pred             ccccccC-CCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          194 MQVKEKL-GEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       194 ~~~~~~~-~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .+++... +.||+|+... +..++.+++.++++++.+.|||||++++.
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9987653 6899999654 33556778899999999999999998654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.65  E-value=9e-17  Score=143.15  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      .++++|||||||+ |.+++++|+...++++|+++|+|+++++.|++++++.| +.++|+|+++|+.+....      .+.
T Consensus        59 ~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           59 TRAKKVLELGTFT-GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HTCSEEEEEESCC-SHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             cCcCEEEEeeCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            4678999999996 78889999843358999999999999999999999999 788999999999876554      368


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    ....++++.+.+.|+|||+|++.+.
T Consensus       137 fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          137 FDFIFIDADK----TNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEESCG----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EeEEEEcCCh----HHhHHHHHHHHHhcCCCeEEEEECC
Confidence            9999988653    6778899999999999999999774

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.65  E-value=5.1e-16  Score=137.05  Aligned_cols=144  Identities=16%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---~~~fD~  205 (284)
                      .++.+|||||||+ |..++.+|+ ..++++|+++|+|+++++.|+++++..| +. +++|+++|+.+++..   .+.||+
T Consensus        69 ~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGA-GFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEeccHHHhcccccccCCccE
Confidence            4678999999997 677788886 4588999999999999999999999999 44 699999999887642   357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEEEEE---ecCCcceeeeEEEEee
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSV---FHPTNEVINSVVLVRK  281 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~~~~---~hP~~~v~nsvi~~r~  281 (284)
                      |+..+.     .+...+++.+.+.|+|||.+++..+.....-+-.....-.-.||++...   .+|..+-...+++++|
T Consensus       145 V~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k  218 (240)
T 1xdz_A          145 VTARAV-----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRK  218 (240)
T ss_dssp             EEEECC-----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEecc-----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEe
Confidence            997653     4577899999999999999988643211100000000001147776543   4677655555777766

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.65  E-value=5e-16  Score=136.71  Aligned_cols=106  Identities=19%  Similarity=0.287  Sum_probs=91.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-c-CCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-K-LGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~-~~~fD~V  206 (284)
                      .++.+|||||||+ |.+++.+|+ ..++.+|+++|+|+++++.|+++++..| +.++++|+++|+.+... . .+.||+|
T Consensus        70 ~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAI-GYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSS-SHHHHHHHT-TCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhhccCCccEE
Confidence            4688999999996 788888988 5679999999999999999999999999 67899999999987654 2 3579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..    ....++++.+.+.|+|||+|++.+.
T Consensus       147 ~~~~~~----~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          147 FIDAAK----AQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             EEETTS----SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             EEcCcH----HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            987654    5677899999999999999999663

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.65  E-value=2.4e-15  Score=128.88  Aligned_cols=110  Identities=14%  Similarity=0.170  Sum_probs=93.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +......++.+|||||||+ |..++.+|+ ..++.+|+++|+|+++++.|+++++..| + ++++++++|+.+.......
T Consensus        33 l~~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           33 LSKLRLQDDLVMWDIGAGS-ASVSIEASN-LMPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHTTCCTTCEEEEETCTT-CHHHHHHHH-HCTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCTTTTCTTSCC
T ss_pred             HHHcCCCCCCEEEEECCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCChhhhhhcCCC
Confidence            3445668889999999997 566777887 3667999999999999999999999999 4 7899999999776665578


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+.+...    .+..++++++.+.|+|||++++..
T Consensus       109 ~D~i~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          109 PDRVFIGGSG----GMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             CSEEEESCCT----TCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCEEEECCCC----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999977654    366789999999999999999975

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.64  E-value=4.5e-16  Score=139.01  Aligned_cols=107  Identities=18%  Similarity=0.276  Sum_probs=92.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-------LG  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-------~~  201 (284)
                      .++++|||||||+ |++++++|++..++++|+++|+|+++++.|++++++.| +.++|+|+++|+.+....       .+
T Consensus        78 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hCcCEEEEeCCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            4678999999996 88999999843448999999999999999999999999 678999999999875432       35


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+++..    .....+++.+.+.|+|||+|++.+.
T Consensus       156 ~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          156 SYDFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             CBSEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             CEEEEEEcCch----HHHHHHHHHHHHhCCCCeEEEEecC
Confidence            79999988654    5678899999999999999999773

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.64  E-value=3.4e-16  Score=136.33  Aligned_cols=109  Identities=14%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------GE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~~  202 (284)
                      .++++|||||||+ |..++.+|+...++++|+++|+|+++++.|++++++.| +.++|+|+++|+.+....+      +.
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           57 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            4678999999997 67888999843458999999999999999999999999 6788999999997754433      47


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++.... ..+..++++.+ +.|+|||+|++.+.
T Consensus       135 fD~V~~d~~~~~-~~~~~~~~~~~-~~LkpgG~lv~~~~  171 (221)
T 3u81_A          135 LDMVFLDHWKDR-YLPDTLLLEKC-GLLRKGTVLLADNV  171 (221)
T ss_dssp             CSEEEECSCGGG-HHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred             eEEEEEcCCccc-chHHHHHHHhc-cccCCCeEEEEeCC
Confidence            999998875421 23444677777 99999999999763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.64  E-value=7.6e-16  Score=136.38  Aligned_cols=107  Identities=22%  Similarity=0.314  Sum_probs=92.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-------LG  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-------~~  201 (284)
                      .++++|||||||+ |.+++++|++..++++|+++|+|+++++.|++++++.| +.++|+++++|+.+....       .+
T Consensus        69 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            4678999999996 78899999844448999999999999999999999999 678999999999875432       35


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+++..    .....+++.+.+.|+|||++++.+.
T Consensus       147 ~fD~I~~d~~~----~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          147 SYDFGFVDADK----PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CcCEEEECCch----HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            79999988653    6788999999999999999999874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.64  E-value=3.5e-15  Score=129.21  Aligned_cols=109  Identities=9%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++......++.+|||||||+ |..++.+|+   .+++|+++|+|+++++.|++++++.| +.++++++++|+.+......
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~  121 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQGTAPAALADLP  121 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCTTGGGTTSC
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeCchhhhcccCC
Confidence            34445678889999999998 677788888   38999999999999999999999999 56689999999988555556


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+....     +.. +++.+.+.|+|||++++...
T Consensus       122 ~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          122 LPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             CCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            89999977632     334 99999999999999999764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.64  E-value=6e-15  Score=132.77  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=89.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+...| +  +++|+++|+.+.+. .+.||+|+.
T Consensus       119 ~~~~~vLD~GcG~-G~~~~~l~~---~g~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~-~~~fD~i~~  190 (286)
T 3m70_A          119 ISPCKVLDLGCGQ-GRNSLYLSL---LGYDVTSWDHNENSIAFLNETKEKEN-L--NISTALYDINAANI-QENYDFIVS  190 (286)
T ss_dssp             SCSCEEEEESCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEeccccccc-cCCccEEEE
Confidence            4789999999997 566777888   48899999999999999999999988 4  89999999987665 567999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .... .++.+...++++.+.+.|+|||.+++..
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7644 4566778899999999999999977755

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.64  E-value=1.7e-15  Score=132.40  Aligned_cols=106  Identities=20%  Similarity=0.231  Sum_probs=89.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   ++.+|+|+|+|+.+++.|++.+...| ...+++|+++|+.+.+. ...||+|+.
T Consensus        65 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~fD~v~~  138 (235)
T 3lcc_A           65 LPLGRALVPGCGG-GHDVVAMAS---PERFVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFTWRP-TELFDLIFD  138 (235)
T ss_dssp             SCCEEEEEETCTT-CHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTTCCC-SSCEEEEEE
T ss_pred             CCCCCEEEeCCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhcCCC-CCCeeEEEE
Confidence            3456999999997 566677877   78999999999999999999998876 56789999999988653 348999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .... .++.++..++++.+.+.|+|||.+++..
T Consensus       139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            6544 5566788999999999999999999865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=8.1e-16  Score=133.43  Aligned_cols=107  Identities=19%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------GE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~~  202 (284)
                      .++.+|||||||+ |..++.+|+...++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.....      +.
T Consensus        63 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           63 MQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-LSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            4678999999997 67888898832338999999999999999999999999 6888999999997654322      57


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    .....+++.+.+.|+|||+|++.+.
T Consensus       141 fD~v~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          141 YDLIYIDADK----ANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             EEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999977653    6778899999999999999999774

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.63  E-value=8e-15  Score=124.30  Aligned_cols=117  Identities=10%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-  199 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-  199 (284)
                      ..+......++.+|||+|||++. .++.+++  ....+|+++|+|+++++.|+++++..| + ++++|+++|+.+.+.. 
T Consensus        35 ~~l~~~~~~~~~~vLDlgcG~G~-~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~  109 (189)
T 3p9n_A           35 NIVTARRDLTGLAVLDLYAGSGA-LGLEALS--RGAASVLFVESDQRSAAVIARNIEALG-L-SGATLRRGAVAAVVAAG  109 (189)
T ss_dssp             HHHHHHSCCTTCEEEEETCTTCH-HHHHHHH--TTCSEEEEEECCHHHHHHHHHHHHHHT-C-SCEEEEESCHHHHHHHC
T ss_pred             HHHHhccCCCCCEEEEeCCCcCH-HHHHHHH--CCCCeEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEccHHHHHhhc
Confidence            33433334678999999999854 4555555  255689999999999999999999999 4 7899999999887543 


Q ss_pred             -CCCccEEEecccccCChHHHHHHHHHHHh--hcCCCcEEEEEecC
Q 036061          200 -LGEYDCIFLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSAK  242 (284)
Q Consensus       200 -~~~fD~V~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~~  242 (284)
                       .+.||+|+++...+...++..++++.+.+  .|+|||++++....
T Consensus       110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence             35799999876544444778899999999  99999999998753

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.63  E-value=3e-15  Score=129.26  Aligned_cols=109  Identities=15%  Similarity=0.245  Sum_probs=89.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEeccccccccCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .++.+|||||||+ |..+..+++ ..+..+|+|+|+|+.+++.|++.+...+ +..    +++|+++|+...+...+.||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (219)
T 3jwg_A           28 VNAKKVIDLGCGE-GNLLSLLLK-DKSFEQITGVDVSYSVLERAKDRLKIDR-LPEMQRKRISLFQSSLVYRDKRFSGYD  104 (219)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHT-STTCCEEEEEESCHHHHHHHHHHHTGGG-SCHHHHTTEEEEECCSSSCCGGGTTCS
T ss_pred             cCCCEEEEecCCC-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHHHhhc-cccccCcceEEEeCcccccccccCCCC
Confidence            5788999999997 455677776 3455899999999999999999998877 554    89999999976665556899


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ .++.++..++++++.+.|||||+++...
T Consensus       105 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          105 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99976544 5566677899999999999999776654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.63  E-value=1.7e-15  Score=135.57  Aligned_cols=140  Identities=11%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---~~~fD~  205 (284)
                      .++.+|||||||+ |..++.+|. ..++++|+++|+|+++++.|+++++++| +. +|+|+++|+.++...   .+.||+
T Consensus        79 ~~~~~vLDiG~G~-G~~~i~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~-~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGA-GFPGLPLKI-VRPELELVLVDATRKKVAFVERAIEVLG-LK-GARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTT-TTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-ceEEEECcHHHhhcccccCCCceE
Confidence            5678999999997 677888887 4689999999999999999999999999 54 599999999887653   257999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCc----cCCCcEEEEE---ecCCcceeeeEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH----DLLDFELLSV---FHPTNEVINSVVL  278 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~----dl~gfe~~~~---~hP~~~v~nsvi~  278 (284)
                      |+..+.     .+...+++.+.+.|+|||++++-.+....    ..+...    ...||++..+   ..|..+-.-.+++
T Consensus       155 I~s~a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~----~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~  225 (249)
T 3g89_A          155 AVARAV-----APLCVLSELLLPFLEVGGAAVAMKGPRVE----EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVV  225 (249)
T ss_dssp             EEEESS-----CCHHHHHHHHGGGEEEEEEEEEEECSCCH----HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCc-----CCHHHHHHHHHHHcCCCeEEEEEeCCCcH----HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEE
Confidence            997654     34568999999999999998876532111    011110    1137766544   3566544444666


Q ss_pred             Eee
Q 036061          279 VRK  281 (284)
Q Consensus       279 ~r~  281 (284)
                      .+|
T Consensus       226 ~~k  228 (249)
T 3g89_A          226 LEK  228 (249)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.62  E-value=1e-15  Score=135.39  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GE  202 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~  202 (284)
                      +....++.||||||||+ |.++..+++  ..+.+||+||+||++++.|++.++..+.   +++++.+|+.++....  +.
T Consensus        55 ~~~~~~G~rVLdiG~G~-G~~~~~~~~--~~~~~v~~id~~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~  128 (236)
T 3orh_A           55 AAASSKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDVAPTLPDGH  128 (236)
T ss_dssp             HHHTTTCEEEEEECCTT-SHHHHHHTT--SCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHHGGGSCTTC
T ss_pred             HhhccCCCeEEEECCCc-cHHHHHHHH--hCCcEEEEEeCCHHHHHHHHHHHhhCCC---ceEEEeehHHhhcccccccC
Confidence            33457889999999995 788899987  3567999999999999999999988773   8999999998765433  46


Q ss_pred             ccEEEecccc----cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV----GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v----~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||.|+++..+    ..+..++..+++++.|+|||||+|++-+
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            9999876532    3355788999999999999999998865

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.62  E-value=3.6e-15  Score=132.92  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=91.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++  .++++|+|+|+|+.+++.|++.++..| +.++++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLDiGcG~-G~~~~~la~--~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~i~  119 (267)
T 3kkz_A           44 LTEKSLIADIGCGT-GGQTMVLAG--HVTGQVTGLDFLSGFIDIFNRNARQSG-LQNRVTGIVGSMDDLPFRNEELDLIW  119 (267)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHT--TCSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHh--ccCCEEEEEeCCHHHHHHHHHHHHHcC-CCcCcEEEEcChhhCCCCCCCEEEEE
Confidence            47889999999997 566777887  377899999999999999999999999 78889999999988776566899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+..-  +..++++++.+.|+|||++++.+
T Consensus       120 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          120 SEGAIYNI--GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EcCCceec--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            76654221  46789999999999999999976

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.61  E-value=1.3e-15  Score=134.12  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=91.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------GE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~~  202 (284)
                      .++++|||||||+ |++++++|+...++++|+++|+|+++++.|++++++.| +.++++|+++|+.+....+      +.
T Consensus        71 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVFR-GYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            4678999999995 78899999843348899999999999999999999999 6778999999987643322      57


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    ++..++++.+.+.|+|||++++.+.
T Consensus       149 fD~V~~d~~~----~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          149 FDLIFIDADK----RNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEECSCG----GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             cCEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            9999987653    6788899999999999999999874

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.61  E-value=6.3e-15  Score=127.25  Aligned_cols=109  Identities=10%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEeccccccccCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .++.+|||||||+ |..+..+++ ..+..+|+++|+|+++++.|++.+...| +.+    +++|+++|+...+...+.||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (217)
T 3jwh_A           28 SNARRVIDLGCGQ-GNLLKILLK-DSFFEQITGVDVSYRSLEIAQERLDRLR-LPRNQWERLQLIQGALTYQDKRFHGYD  104 (217)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHH-CTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHh-hCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcccCcceEEEeCCcccccccCCCcC
Confidence            5778999999998 455667777 3556899999999999999999998888 554    89999999876555556899


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ .++.++..++++++.+.|||||++++..
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          105 AATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99976654 5566677899999999999999877755

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.61  E-value=7.1e-15  Score=122.20  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=88.7

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~  202 (284)
                      ......++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|++++...| +.+++ ++++|+.+..... +.
T Consensus        19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGS-GSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHCCCTTEEEEEESTTT-THHHHHHHT-TSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTGGGGGCCSC
T ss_pred             HHhcccCCCeEEEeCCCC-CHHHHHHHH-HCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHhhhhccCCC
Confidence            344567888999999997 666777777 4578999999999999999999999999 56689 8899986544433 67


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|++....+.     .++++++.+.|+|||.+++...
T Consensus        95 ~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           95 PDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence            999997765422     6799999999999999998763

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.61  E-value=1.3e-15  Score=131.23  Aligned_cols=106  Identities=17%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V~  207 (284)
                      .++.+|||||||+ |.+++.+|+...++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.... .+ ||+||
T Consensus        55 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~-fD~v~  131 (210)
T 3c3p_A           55 KQPQLVVVPGDGL-GCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG-LIDRVELQVGDPLGIAAGQRD-IDILF  131 (210)
T ss_dssp             HCCSEEEEESCGG-GHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-GGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred             hCCCEEEEEcCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCceEEEEEecHHHHhccCCC-CCEEE
Confidence            3678999999996 78889999832238999999999999999999999999 678899999999875332 24 99999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++..    .....+++.+.+.|+|||++++.+.
T Consensus       132 ~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          132 MDCDV----FNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EETTT----SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EcCCh----hhhHHHHHHHHHhcCCCeEEEEECc
Confidence            87543    5677899999999999999999663

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.61  E-value=4e-15  Score=131.09  Aligned_cols=109  Identities=13%  Similarity=0.104  Sum_probs=90.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||+ |..+..+|+.  .+++|+++|+|+++++.|++.++..| +.++++|+++|+.+.+. .+.||+
T Consensus        32 ~~~~~~~~VLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~fD~  106 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGS-GEMLCTWARD--HGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYVA-NEKCDV  106 (256)
T ss_dssp             TCCCTTCEEEEETCTT-CHHHHHHHHH--TCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCCC-SSCEEE
T ss_pred             cCCCCCCEEEEECCCC-CHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECChHhCCc-CCCCCE
Confidence            3567889999999998 5566777773  37899999999999999999999999 67799999999988766 567999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+...... ...+..++++++.+.|||||.+++..
T Consensus       107 V~~~~~~~-~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          107 AACVGATW-IAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEESCGG-GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEECCChH-hcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            99654331 12357889999999999999999976

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.61  E-value=4.4e-15  Score=130.88  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++. . +++|+|+|+|+.+++.|++.+...| +.++++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLDiG~G~-G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~  119 (257)
T 3f4k_A           44 LTDDAKIADIGCGT-GGQTLFLADY-V-KGQITGIDLFPDFIEIFNENAVKAN-CADRVKGITGSMDNLPFQNEELDLIW  119 (257)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHH-C-CSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHh-C-CCeEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCCCCCCEEEEE
Confidence            46778999999997 5667778772 3 3599999999999999999999999 78889999999988776667899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+..-  +..++++++.+.|+|||++++..
T Consensus       120 ~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYNI--GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCCC--CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecChHhhc--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            77654322  46789999999999999999976

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.61  E-value=1.1e-14  Score=126.81  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++   .+.+|+++|+|+.+++.|++.+...| +  +++|+++|+.+.+.. +.||+|+.
T Consensus        36 ~~~~~vLdiG~G~G-~~~~~l~~---~~~~~~~~D~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~-~~fD~v~~  107 (246)
T 1y8c_A           36 LVFDDYLDLACGTG-NLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQG-L--KPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTS-TTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTT-C--CCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEeCCCCC-HHHHHHHH---CCCcEEEEECCHHHHHHHHHHHhhcC-C--CeEEEecccccCCcc-CCceEEEE
Confidence            47789999999974 55677777   47899999999999999999998887 3  899999999887655 68999997


Q ss_pred             cc-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AA-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .. .+ ++ +.++..++++++.+.|+|||.+++..
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            65 43 33 44778899999999999999999844

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.60  E-value=1.2e-14  Score=123.41  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=91.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~  205 (284)
                      ...++.+|||+|||+ |..++.++++..++++|+++|+|+++++.|+++++..| +..+++|+++|+.+++. ..+.||+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             cCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHhhhccCCceE
Confidence            457789999999998 56667777744466899999999999999999999998 67899999999988763 2357999


Q ss_pred             EEecccc-c-------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALV-G-------MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v-~-------~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++... .       ...+...++++++.+.|+|||++++...
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            9976422 1       1234567799999999999999998764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.60  E-value=6.1e-15  Score=125.92  Aligned_cols=108  Identities=21%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++ +|||||||+ |..+..+++.  ++.+|+++|+|+.+++.|++.+...| +..+++|+++|+.+++...+.||+|
T Consensus        41 ~~~~~-~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v  115 (219)
T 3dlc_A           41 GITAG-TCIDIGSGP-GALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVHNIPIEDNYADLI  115 (219)
T ss_dssp             CCCEE-EEEEETCTT-SHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             CCCCC-EEEEECCCC-CHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHHHCCCCcccccEE
Confidence            33444 999999997 5566777773  78999999999999999999999999 6789999999998877666789999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....+.. .++..++++++.+.|+|||.+++..
T Consensus       116 ~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          116 VSRGSVFF-WEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECchHhh-ccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            97654422 2567789999999999999999975

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.60  E-value=8.4e-15  Score=132.92  Aligned_cols=112  Identities=17%  Similarity=0.112  Sum_probs=92.2

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEeccccccccC-
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFVTCDIMQVKEKL-  200 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~~~-  200 (284)
                      +......++.+|||||||+ |..+..+++...++.+|+|+|+|+.+++.|+++++.. | ...+++|+++|+.+++... 
T Consensus        29 l~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~  106 (299)
T 3g5t_A           29 IDEYHDGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD-TYKNVSFKISSSDDFKFLGA  106 (299)
T ss_dssp             HHHHCCSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCCGGGCT
T ss_pred             HHHHhcCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC-CCCceEEEEcCHHhCCcccc
Confidence            3344456889999999997 5667778853238999999999999999999999987 4 4679999999999877655 


Q ss_pred             -----CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          201 -----GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       201 -----~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                           +.||+|+....+++-  +..++++++.+.|+|||.|++
T Consensus       107 ~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          107 DSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEE
Confidence                 689999977655333  778899999999999999988

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=1.2e-14  Score=130.64  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||++ ..+..+++.  .|++|+|+|+|+++++.|++.+...| +..+++|+++|+.+++   +.||
T Consensus        59 ~~~~~~~~~vLDiGcG~G-~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~---~~fD  131 (287)
T 1kpg_A           59 KLGLQPGMTLLDVGCGWG-ATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD---EPVD  131 (287)
T ss_dssp             TTTCCTTCEEEEETCTTS-HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC---CCCS
T ss_pred             HcCCCCcCEEEEECCccc-HHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCC---CCee
Confidence            345678899999999984 556677752  46799999999999999999999998 6789999999997755   6899


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ +++.++..++++++.+.|||||.+++..
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99976544 4455678899999999999999999976

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.60  E-value=1.5e-14  Score=131.39  Aligned_cols=111  Identities=13%  Similarity=0.057  Sum_probs=92.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +......++.+|||||||+ |..+..+++.  .|++|+|+|+|+++++.|++.+...| +.++++|+++|+.++   .+.
T Consensus        65 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~---~~~  137 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIGCGW-GSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEEF---DEP  137 (302)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCGGGC---CCC
T ss_pred             HHHcCCCCcCEEEEeeccC-cHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCHHHc---CCC
Confidence            3444567889999999998 5556777772  36999999999999999999999999 688999999999875   468


Q ss_pred             ccEEEecccc-cC-------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GM-------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~-------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+....+ ++       ..+...++++++.+.|||||++++..
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999976544 44       23567899999999999999999976

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.60  E-value=1.7e-14  Score=128.35  Aligned_cols=113  Identities=13%  Similarity=0.259  Sum_probs=93.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +......++.+|||||||+ |..+..+++.  .+++|+++|+|+.+++.|++.+...| +.++++|+++|+.+++...+.
T Consensus        54 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~  129 (273)
T 3bus_A           54 IALLDVRSGDRVLDVGCGI-GKPAVRLATA--RDVRVTGISISRPQVNQANARATAAG-LANRVTFSYADAMDLPFEDAS  129 (273)
T ss_dssp             HHHSCCCTTCEEEEESCTT-SHHHHHHHHH--SCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCSCTTC
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECccccCCCCCCC
Confidence            3444567889999999998 4556677763  48999999999999999999999999 678999999999887766668


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+....+. ..+++.++++++.+.|||||++++..
T Consensus       130 fD~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          130 FDAVWALESLH-HMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEEEESCTT-TSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEechhh-hCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99999665432 12456889999999999999999876

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.59  E-value=1.4e-14  Score=124.65  Aligned_cols=106  Identities=18%  Similarity=0.173  Sum_probs=86.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+...+    +++|+++|+.+.+ ..+.||+|
T Consensus        48 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~-~~~~fD~v  118 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAA-GAFTEKLAP---HCKRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQFS-TAELFDLI  118 (216)
T ss_dssp             TTSSEEEEEEECCTT-SHHHHHHGG---GEEEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTTCC-CSCCEEEE
T ss_pred             ccCCCCcEEEEcCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhhCC-CCCCccEE
Confidence            446778999999997 556677777   46899999999999999999876643    7999999998876 45689999


Q ss_pred             Eecccc-cCC-hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMS-KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~-~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....+ +++ .+...++++++.+.|+|||.+++.+.
T Consensus       119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            977544 443 35567899999999999999999764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.59  E-value=5.3e-15  Score=134.28  Aligned_cols=108  Identities=10%  Similarity=0.159  Sum_probs=89.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEeccccccccCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE--KRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~--~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..++.+|||||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+...| +.  .+++|+++|+.+++. .+.||+
T Consensus        80 ~~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~-~~~fD~  153 (299)
T 3g2m_A           80 GPVSGPVLELAAGM-GRLTFPFLD---LGWEVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDMSAFAL-DKRFGT  153 (299)
T ss_dssp             CCCCSCEEEETCTT-TTTHHHHHT---TTCCEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBTTBCCC-SCCEEE
T ss_pred             CCCCCcEEEEeccC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCchhcCCc-CCCcCE
Confidence            34556999999997 566777887   48899999999999999999998876 32  589999999998765 467999


Q ss_pred             EEeccc-c-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAAL-V-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~-v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++.. . ..+.++..++++++.+.|+|||+|++...
T Consensus       154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            886533 3 34566789999999999999999999763

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.59  E-value=7.8e-15  Score=125.21  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||++..+...+++   +|.+|+++|+|+++++.|++.+...+   .+++++++|+.+.+...+.||+|+.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEE
Confidence            56789999999986555666666   78999999999999999999998877   3799999999887655568999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .... +++.++..++++++.+.|+|||.+++..
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6433 5566888999999999999999999876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.59  E-value=7.3e-15  Score=127.91  Aligned_cols=106  Identities=17%  Similarity=0.338  Sum_probs=88.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..+++ ..++.+|+++|+|+.+++.|++.+...+    +++|+++|+.+.+.. +.||+|+
T Consensus        42 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~~-~~fD~v~  114 (234)
T 3dtn_A           42 DTENPDILDLGAGTG-LLSAFLME-KYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYDFE-EKYDMVV  114 (234)
T ss_dssp             SCSSCEEEEETCTTS-HHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCCCC-SCEEEEE
T ss_pred             CCCCCeEEEecCCCC-HHHHHHHH-hCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccCCC-CCceEEE
Confidence            367799999999985 55566766 3679999999999999999999876544    899999999887766 7899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+ .++..++.++++++.+.|+|||.+++.+
T Consensus       115 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            77544 5566777789999999999999999866

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.59  E-value=5.3e-14  Score=131.22  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=110.7

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ......++.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++.++..| +.++++|+.+|+.+.+  ..++
T Consensus       184 ~~~~~~~~~~vLDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~  257 (359)
T 1x19_A          184 EEAKLDGVKKMIDVGGGIG-DISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YPEA  257 (359)
T ss_dssp             HHCCCTTCCEEEEESCTTC-HHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CTTTEEEEECCTTTSC--CCCC
T ss_pred             HhcCCCCCCEEEEECCccc-HHHHHHHH-HCCCCeEEEEec-HHHHHHHHHHHHhcC-CCCCEEEEeCccccCC--CCCC
Confidence            3444577899999999985 55666776 468899999999 999999999999988 6788999999998653  3456


Q ss_pred             cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecC---c----cccc---c--Cc---c----CCCccC------
Q 036061          204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAK---G----ARAF---L--YP---V----VEKHDL------  257 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~---g----lr~~---l--Yp---~----v~~~dl------  257 (284)
                      |+|++...+ .++.++..++++++.+.|+|||++++.+..   .    ...+   +  ..   .    ...+++      
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~  337 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES  337 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHH
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHH
Confidence            999876544 566677899999999999999999776521   0    0000   0  00   0    122222      


Q ss_pred             CCcEEEEEecCCcceeeeEEEEeec
Q 036061          258 LDFELLSVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       258 ~gfe~~~~~hP~~~v~nsvi~~r~~  282 (284)
                      .||++..+....   ..++|++|||
T Consensus       338 aGf~~v~~~~~~---~~~vi~a~kp  359 (359)
T 1x19_A          338 LGYKDVTMVRKY---DHLLVQAVKP  359 (359)
T ss_dssp             HTCEEEEEEEET---TEEEEEEECC
T ss_pred             CCCceEEEEecC---CceEEEEeCC
Confidence            599987766533   5789999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.58  E-value=2.1e-14  Score=129.73  Aligned_cols=108  Identities=13%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||++ ..+..+++.  .|++|+++|+|+.+++.|++.++..| +..+++|+++|+.+++...+.||+|
T Consensus        79 ~~~~~~~vLDiGcG~G-~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYG-GAARFLVRK--FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEETCTTS-HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCCC-HHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEcCcccCCCCCCCEeEE
Confidence            4578899999999974 556667762  37899999999999999999999999 6889999999999877666789999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....+ ++  .++.++++++.+.|||||.+++..
T Consensus       155 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          155 WSQDAFLHS--PDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eecchhhhc--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            976443 33  347889999999999999999976

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.58  E-value=2.2e-14  Score=131.06  Aligned_cols=109  Identities=12%  Similarity=0.054  Sum_probs=91.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++.  .|++|+++|+|+++++.|++.+...| +.++++|+++|+.+++   +.||
T Consensus        85 ~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~---~~fD  157 (318)
T 2fk8_A           85 KLDLKPGMTLLDIGCGW-GTTMRRAVER--FDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA---EPVD  157 (318)
T ss_dssp             TSCCCTTCEEEEESCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC---CCCS
T ss_pred             hcCCCCcCEEEEEcccc-hHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChHHCC---CCcC
Confidence            34557889999999998 5556777772  27899999999999999999999999 6788999999998754   6799


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ +++.++..++++++.+.|+|||++++..
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99976544 4455788899999999999999999876

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.58  E-value=5.3e-15  Score=128.60  Aligned_cols=107  Identities=15%  Similarity=0.236  Sum_probs=90.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------GE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~~  202 (284)
                      .++++|||||||+ |.+++.+|+...++++|+++|+|+++++.|+++++..| +.++++|+++|+.+....+      +.
T Consensus        68 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            5678999999995 78889999833338999999999999999999999999 6889999999997653322      57


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    ....++++.+.+.|+|||++++.+.
T Consensus       146 ~D~v~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          146 FDVAVVDADK----ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEEECSCS----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            9999987653    5677899999999999999999764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.58  E-value=1.7e-14  Score=131.95  Aligned_cols=106  Identities=8%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..++++  .+++|+|+|+|+++++.|++++...| +.++++|+++|+.+++...+.||+|+
T Consensus       115 ~~~~~~vLDiGcG~G-~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRG-GSMVMAHRR--FGSRVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNMLDTPFDKGAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCTTS-HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEecCCCC-HHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhcCCCCCCCEeEEE
Confidence            577899999999985 556777772  38999999999999999999999999 67899999999988776557899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+ .+   +..++++++.+.|||||++++.+
T Consensus       191 ~~~~l~~~---~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMYV---DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGGS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            76544 33   27889999999999999999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.58  E-value=1.4e-14  Score=128.47  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.+...|.  .+++|+++|+.+++...+.||+|
T Consensus        34 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~l~~~~~~fD~V  107 (260)
T 1vl5_A           34 ALKGNEEVLDVATGG-GHVANAFAP---FVKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERFHIV  107 (260)
T ss_dssp             TCCSCCEEEEETCTT-CHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCEEEE
T ss_pred             CCCCCCEEEEEeCCC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEecHHhCCCCCCCEEEE
Confidence            457889999999997 556677877   346999999999999999999998883  47999999998877666789999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....+ .+  .+...+++++.+.|||||.+++..
T Consensus       108 ~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          108 TCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEhhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            976543 33  456789999999999999999864

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.57  E-value=3.6e-14  Score=124.85  Aligned_cols=108  Identities=19%  Similarity=0.370  Sum_probs=88.4

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.+...|.   +++|+++|+.+.+.+ +.||
T Consensus        36 ~~~~~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD  107 (252)
T 1wzn_A           36 EDAKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIAFK-NEFD  107 (252)
T ss_dssp             HTCSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCCCC-SCEE
T ss_pred             HhcccCCCEEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEECChhhcccC-CCcc
Confidence            33446778999999998 455677887   588999999999999999999988873   799999999886543 5799


Q ss_pred             EEEec--ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLA--ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~a--a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|++.  .....+.++..++++.+.+.|+|||.+++..
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            99864  2234456788899999999999999998753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.57  E-value=1.1e-14  Score=128.42  Aligned_cols=109  Identities=23%  Similarity=0.335  Sum_probs=90.7

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++.  .+++|+++|+|+.+++.|++.+...    .+++|+++|+.+.+...+.||
T Consensus        50 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           50 DIELNENSKVLDIGSGL-GGGCMYINEK--YGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             TCCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCTTCEE
T ss_pred             hcCCCCCCEEEEECCCC-CHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCCCcEE
Confidence            34567889999999997 5666777773  2899999999999999999965543    589999999988766667899


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ +++.++..++++++.+.|+|||.+++..
T Consensus       123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            99976544 5566889999999999999999999976

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.57  E-value=6.8e-15  Score=126.33  Aligned_cols=99  Identities=20%  Similarity=0.296  Sum_probs=81.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCC-Ccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLG-EYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~-~fD  204 (284)
                      .++.+|||||||+ |..+..+++   .|++|+++|+|+.+++.|++.    +    ++++.++|+.++   +.... .||
T Consensus        51 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~----~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGE-GWLLRALAD---RGIEAVGVDGDRTLVDAARAA----G----AGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHT----C----SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHH---CCCEEEEEcCCHHHHHHHHHh----c----ccccchhhHHhhcccccccCCCcc
Confidence            5679999999997 566777887   488999999999999999985    2    578999998876   33334 499


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+....+.  ..+..++++++.+.|+|||.+++...
T Consensus       119 ~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALL--HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            999765544  36677899999999999999999774

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=3.4e-14  Score=118.87  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=102.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+       .+++++++|+.+.+...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQ-GRIGGYLSK---QGHDVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             SCTTCEEEEETCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEEEEE
T ss_pred             ccCCCeEEEECCCC-CHHHHHHHH---CCCcEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCceeEEE
Confidence            56889999999997 556677887   4789999999999999999853       258999999987665556799999


Q ss_pred             ec-ccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCcc------CCCcEEEEEecCCc------cee
Q 036061          208 LA-ALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHD------LLDFELLSVFHPTN------EVI  273 (284)
Q Consensus       208 ~a-a~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~d------l~gfe~~~~~hP~~------~v~  273 (284)
                      .. ... ..+.++..++++.+.+.|+|||.+++....+- .  |   ...+      -.||++........      ..-
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-~--~---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  186 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-G--W---VFGDFLEVAERVGLELENAFESWDLKPFVQGSE  186 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-S--C---CHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCS
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-C--c---CHHHHHHHHHHcCCEEeeeecccccCcCCCCCc
Confidence            86 333 44567789999999999999999998764321 0  1   1111      15899987755422      233


Q ss_pred             eeEEEEeec
Q 036061          274 NSVVLVRKP  282 (284)
Q Consensus       274 nsvi~~r~~  282 (284)
                      .-++++||+
T Consensus       187 ~~~~v~~k~  195 (195)
T 3cgg_A          187 FLVAVFTKK  195 (195)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            447777875

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.57  E-value=2e-14  Score=129.20  Aligned_cols=108  Identities=20%  Similarity=0.269  Sum_probs=89.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-ccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-EKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-~~~~~fD~V  206 (284)
                      ..++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.+...| +..+++|+++|+.+.+ ...+.||+|
T Consensus        66 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v  140 (285)
T 4htf_A           66 GPQKLRVLDAGGGE-GQTAIKMAE---RGHQVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAAQDVASHLETPVDLI  140 (285)
T ss_dssp             CSSCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred             CCCCCEEEEeCCcc-hHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCHHHhhhhcCCCceEE
Confidence            34578999999997 567788888   48999999999999999999999998 6789999999999876 344689999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....+.. .++..++++++.+.|+|||++++...
T Consensus       141 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          141 LFHAVLEW-VADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECchhhc-ccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            97654422 14557899999999999999998763

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.56  E-value=4.2e-14  Score=120.40  Aligned_cols=104  Identities=12%  Similarity=0.188  Sum_probs=88.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++ +|||||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+...|.   +++|+++|+.+.+...+.||+|+.
T Consensus        29 ~~~-~vLdiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           29 PQG-KILCLAEGE-GRNACFLAS---LGYEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             CSS-EEEECCCSC-THHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCC-CEEEECCCC-CHhHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCCCcCCccEEEE
Confidence            345 999999997 566677887   478999999999999999999998883   899999999887655568999986


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      . ...++.++..++++.+.+.|+|||.+++...
T Consensus       101 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A          101 I-FCHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             E-CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             E-hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4 4455668889999999999999999999873

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.56  E-value=8.7e-15  Score=128.05  Aligned_cols=105  Identities=21%  Similarity=0.345  Sum_probs=89.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---~~~fD~  205 (284)
                      .++.+|||||||+ |..++.+|+ ..++.+|+++|+|+++++.|+++++..| +.++++++++|+.+....   .+.||+
T Consensus        53 ~~~~~vLdiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (233)
T 2gpy_A           53 AAPARILEIGTAI-GYSAIRMAQ-ALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDALQLGEKLELYPLFDV  129 (233)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHH-HCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred             cCCCEEEEecCCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhcccCCCccE
Confidence            4678999999996 677788887 4568999999999999999999999999 677899999999875332   357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||++...    +...++++.+.+.|+|||++++.+
T Consensus       130 I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          130 LFIDAAK----GQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEEGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EEECCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            9987654    467789999999999999999975

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.56  E-value=3e-14  Score=126.51  Aligned_cols=99  Identities=10%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+       .+++|+++|+.+++. .+.||+|+.
T Consensus        49 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGT-GMHLRHLAD---SFGTVEGLELSADMLAIARRRN-------PDAVLHHGDMRDFSL-GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHTT---TSSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTCCC-SCCEEEEEE
T ss_pred             CCCCcEEEeCCcC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChHHCCc-cCCcCEEEE
Confidence            5678999999997 556677777   4789999999999999999853       268999999988665 468999997


Q ss_pred             cc-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AA-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .. .+ .+ +.++..++++++.+.|+|||.+++.
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            64 43 33 3367789999999999999999995

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.56  E-value=1.9e-14  Score=124.01  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+.      .+++|+++|+.+++.. +.||+|+.
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~  112 (220)
T 3hnr_A           44 KSFGNVLEFGVGT-GNLTNKLLL---AGRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVS  112 (220)
T ss_dssp             TCCSEEEEECCTT-SHHHHHHHH---TTCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHh---CCCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEE
Confidence            5788999999997 566677887   48899999999999999998644      4789999999987766 78999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+ .++..++.++++++.+.|||||.+++..
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            7654 5566666779999999999999999975

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.55  E-value=6.9e-14  Score=116.91  Aligned_cols=112  Identities=19%  Similarity=0.249  Sum_probs=91.5

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEeccccccccCCCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~~~~~~~~~~f  203 (284)
                      .....++.+|||+|||+ |..+..+++   .+.+|+++|+|+.+++.|++++...| +.+ +++++++|+.+... .+.|
T Consensus        47 ~~~~~~~~~vLdiG~G~-G~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~-~~~~  120 (194)
T 1dus_A           47 NVVVDKDDDILDLGCGY-GVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENVK-DRKY  120 (194)
T ss_dssp             HCCCCTTCEEEEETCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTCT-TSCE
T ss_pred             HcccCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECchhcccc-cCCc
Confidence            33456888999999997 566677887   28999999999999999999999988 444 59999999977433 4579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      |+|+.+.......+...++++.+.+.|+|||.+++....
T Consensus       121 D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             eEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            999987654444577789999999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.55  E-value=1.3e-14  Score=127.73  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=89.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--------  200 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--------  200 (284)
                      .++.+|||||||+ |..++.+|+...++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.....        
T Consensus        59 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             hCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHHHHHHHhhccccc
Confidence            4678999999996 67788888843337999999999999999999999999 6778999999997643211        


Q ss_pred             ---------CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 ---------GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ---------~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                               +.||+||++...    +...++++.+.+.|+|||++++.+.
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                     579999987543    6677899999999999999999763

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.55  E-value=3.8e-14  Score=130.06  Aligned_cols=107  Identities=17%  Similarity=0.258  Sum_probs=89.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++ ..++.+++++|+| .+++.|++.+.+.| +.++++|+++|..+.+.+ ..||+|++
T Consensus       164 ~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~~-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHG-LFGIAVAQ-HNPNAEIFGVDWA-SVLEVAKENARIQG-VASRYHTIAGSAFEVDYG-NDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTC-HHHHHHHH-HCTTCEEEEEECH-HHHHHHHHHHHHHT-CGGGEEEEESCTTTSCCC-SCEEEEEE
T ss_pred             CCCCEEEEECCCcC-HHHHHHHH-HCCCCeEEEEecH-HHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCcEEEE
Confidence            67899999999985 55666776 3678999999999 99999999999988 677899999999764332 34999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+ .++.++..++++++.+.|+|||.+++..
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            5543 5666788899999999999999888765

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.55  E-value=7.1e-14  Score=120.85  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=87.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V  206 (284)
                      .++.+|||||||+ |..++.+|+ ..++++|+|+|+|+.+++.|++++...| + ++++|+++|+.+++  ...+.||+|
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCc-CHHHHHHHH-HCCCCCEEEEEcCHHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            4678999999997 556677777 4678999999999999999999999998 4 68999999998865  334579999


Q ss_pred             EecccccCChH-------HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKE-------EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~-------~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++.....+...       ....+++.+.+.|+|||.+++.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            97643222110       125799999999999999999874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=1.5e-14  Score=126.90  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=86.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc--cccCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV--KEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~--~~~~~~fD~  205 (284)
                      ..++.+|||||||+ |..+..+++  ....+|+++|+|+.+++.|++.++..|   .+++|+++|+.++  +...+.||+
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHh--cCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEE
Confidence            46788999999997 566677776  344599999999999999999888776   4899999999887  444467999


Q ss_pred             EEeccc---c-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAAL---V-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~---v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+.+..   . ......+..++++++++|||||+|++-+.
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            987221   1 22346677899999999999999998653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.55  E-value=3.6e-14  Score=124.70  Aligned_cols=107  Identities=13%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..+.++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+...|.  .+++|+++|+.+++...+.||+
T Consensus        17 ~~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCEEE
T ss_pred             hCcCCCCEEEEEccCc-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcCC--CCeEEEecccccCCCCCCcEEE
Confidence            3567899999999997 566777877   456999999999999999999998883  4799999999887766568999


Q ss_pred             EEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+..... ++  .+..++++++.+.|+|||.+++..
T Consensus        91 v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           91 ITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCchhhc--cCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9976443 33  456789999999999999999865

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.54  E-value=1.1e-13  Score=127.59  Aligned_cols=144  Identities=15%  Similarity=0.090  Sum_probs=107.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++ ..++.+++++|+ |.+++.|++.+...| +.++|+|+.+|..+ +.+. .||+|++
T Consensus       168 ~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~p~-~~D~v~~  241 (332)
T 3i53_A          168 AALGHVVDVGGGSG-GLLSALLT-AHEDLSGTVLDL-QGPASAAHRRFLDTG-LSGRAQVVVGSFFD-PLPA-GAGGYVL  241 (332)
T ss_dssp             GGGSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCCC-SCSEEEE
T ss_pred             CCCCEEEEeCCChh-HHHHHHHH-HCCCCeEEEecC-HHHHHHHHHhhhhcC-cCcCeEEecCCCCC-CCCC-CCcEEEE
Confidence            55789999999985 55666776 478999999999 999999999999988 68899999999963 2222 7999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecC---ccc--c--c------cCccCCCc---cC---CCcEEEEEecC
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAK---GAR--A--F------LYPVVEKH---DL---LDFELLSVFHP  268 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~---glr--~--~------lYp~v~~~---dl---~gfe~~~~~hP  268 (284)
                      ...+ .++.++..++++++++.|+|||++++.+..   ...  .  +      .......+   .+   .||++..+.. 
T Consensus       242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-  320 (332)
T 3i53_A          242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP-  320 (332)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE-
T ss_pred             ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE-
Confidence            7644 567777899999999999999999886631   100  0  0      00011111   12   6999987764 


Q ss_pred             CcceeeeEEEEee
Q 036061          269 TNEVINSVVLVRK  281 (284)
Q Consensus       269 ~~~v~nsvi~~r~  281 (284)
                      .+.  -|+|.+|+
T Consensus       321 ~~~--~~vie~r~  331 (332)
T 3i53_A          321 ISY--VSIVEMTA  331 (332)
T ss_dssp             CSS--SEEEEEEE
T ss_pred             CCC--cEEEEEee
Confidence            444  78998886

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.54  E-value=1.6e-13  Score=128.89  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .+...++.+|||||||+ |..+..+++ ..++.+++++|+ |.+++.|++.+...| +.++|+|+.+|..+ +.+. .||
T Consensus       197 ~~~~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-l~~~v~~~~~d~~~-~~p~-~~D  270 (369)
T 3gwz_A          197 AYDFSGAATAVDIGGGR-GSLMAAVLD-AFPGLRGTLLER-PPVAEEARELLTGRG-LADRCEILPGDFFE-TIPD-GAD  270 (369)
T ss_dssp             HSCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTT-CCCS-SCS
T ss_pred             hCCCccCcEEEEeCCCc-cHHHHHHHH-HCCCCeEEEEcC-HHHHHHHHHhhhhcC-cCCceEEeccCCCC-CCCC-Cce
Confidence            33456789999999998 456667776 478999999999 999999999999998 78899999999973 2222 799


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec---Cc-c-----ccc------cCccCCCc---cC---CCcEE
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA---KG-A-----RAF------LYPVVEKH---DL---LDFEL  262 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~---~g-l-----r~~------lYp~v~~~---dl---~gfe~  262 (284)
                      +|++...+ .++.++..++++++++.|+|||++++...   .. .     ..+      .......+   .+   .||++
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~  350 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV  350 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence            99976644 56777777999999999999999998652   10 0     000      00001111   11   69999


Q ss_pred             EEEecCCcceeeeEEEEee
Q 036061          263 LSVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       263 ~~~~hP~~~v~nsvi~~r~  281 (284)
                      ..+....+. ..|+|.+||
T Consensus       351 ~~~~~~~~~-~~svie~~~  368 (369)
T 3gwz_A          351 ERSLPCGAG-PVRIVEIRR  368 (369)
T ss_dssp             EEEEECSSS-SEEEEEEEE
T ss_pred             EEEEECCCC-CcEEEEEEe
Confidence            888662332 247888887

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.54  E-value=5.6e-14  Score=122.24  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=86.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V  206 (284)
                      .++.+|||||||+ |..++.+|+ ..++.+|+|||+|+++++.|++++.+.| + .+++|+++|+.+++  .+.+.||.|
T Consensus        37 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-~-~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCC-CHHHHHHHH-HCCCCCEEEEEechHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            4678999999997 566677887 4689999999999999999999999998 4 57999999998864  234579999


Q ss_pred             EecccccCChH--H-----HHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKE--E-----KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~--~-----k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...-.+...  .     ...+++.+.+.|+|||.|++.+
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            86432222111  0     2578999999999999999987

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=1.4e-13  Score=118.66  Aligned_cols=106  Identities=17%  Similarity=0.204  Sum_probs=87.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++   .+.+|+++|+|+++++.|++.+...+   .+++++++|+.+.+...+.||+|+.
T Consensus        37 ~~~~~vLDlG~G~G-~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGVG-GFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             CSCCEEEEETCTTS-HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCC-HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCCCCCcEEEEEE
Confidence            45889999999985 45577777   35599999999999999999998876   4899999999886654568999987


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .... ..+..+..++++++.+.|+|||.+++...
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            6542 34557778999999999999999988764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.54  E-value=5.8e-14  Score=125.32  Aligned_cols=108  Identities=21%  Similarity=0.338  Sum_probs=90.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..+++ ..++.+|+++|+|+.+++.|++.+...|.  .+++|+++|+.+++...+.||+|+
T Consensus        35 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~  110 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIG-AQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGI--KNVKFLQANIFSLPFEDSSFDHIF  110 (276)
T ss_dssp             CCTTCEEEETTCTTS-HHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGCCSCTTCEEEEE
T ss_pred             CCCCCeEEEecCCCC-HHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEcccccCCCCCCCeeEEE
Confidence            478899999999974 55667777 46789999999999999999999999884  479999999998776667899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ....+ ..  .+...+++++.+.|+|||++++...
T Consensus       111 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          111 VCFVLEHL--QSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Eechhhhc--CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            76544 32  3456899999999999999999763

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.53  E-value=5.4e-14  Score=121.46  Aligned_cols=107  Identities=19%  Similarity=0.283  Sum_probs=89.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEeccccccccCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF----EKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l----~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+...+ +    ..+++|+++|+.+.+...+.||
T Consensus        29 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGS-GKISLELAS---KGYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecccccCCCCCcee
Confidence            5788999999997 566777888   48899999999999999999998877 4    3469999999988776667899


Q ss_pred             EEEecccc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|++...+ .+ +.+.+.++++++.+.|+|||.+++..
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            99976544 44 34556799999999999999999875

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=131.53  Aligned_cols=108  Identities=20%  Similarity=0.320  Sum_probs=83.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--------------------------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE--------------------------  183 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~--------------------------  183 (284)
                      ++++|||||||+ |..++.+|+ .+++.+|+|+|+|+.+++.|++.+...+ ..                          
T Consensus        46 ~~~~VLDiGCG~-G~~~~~la~-~~~~~~v~gvDis~~~i~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           46 RGRDVLDLGCNV-GHLTLSIAC-KWGPSRMVGLDIDSRLIHSARQNIRHYL-SEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             TTSEEEEESCTT-CHHHHHHHH-HTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             CCCcEEEeCCCC-CHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHHHHhhh-hhhccccccccccccccccccccccccc
Confidence            689999999998 556677777 4678999999999999999999887655 22                          


Q ss_pred             -------------------------------CCeEEEEecccccc-----ccCCCccEEEecccc-cC----ChHHHHHH
Q 036061          184 -------------------------------KRMKFVTCDIMQVK-----EKLGEYDCIFLAALV-GM----SKEEKVKI  222 (284)
Q Consensus       184 -------------------------------~~I~f~~~D~~~~~-----~~~~~fD~V~~aa~v-~~----~~~~k~~i  222 (284)
                                                     .+|+|+++|..+..     ...+.||+|+..... ..    +.+...++
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                           58999999997543     234679999976543 11    34578899


Q ss_pred             HHHHHhhcCCCcEEEEEe
Q 036061          223 IKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       223 l~~l~~~l~pGg~lv~r~  240 (284)
                      ++++++.|+|||+|++..
T Consensus       203 l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCcEEEEec
Confidence            999999999999999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.53  E-value=7.3e-14  Score=121.36  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++   .+.+|+++|+|+++++.|++..       .+++++++|+.+.+. .+.||+|+.
T Consensus        39 ~~~~~vLdiG~G~G-~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGTG-THLEHFTK---EFGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTTS-HHHHHHHH---HHSEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred             CCCCeEEEecccCC-HHHHHHHH---hCCcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEE
Confidence            67789999999975 55667777   3459999999999999999852       368999999987665 457999994


Q ss_pred             cc-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AA-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .. .+ .+ +.++..++++++.+.|+|||.+++..
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            32 32 33 44778899999999999999999964

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.53  E-value=2.7e-14  Score=125.22  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD~  205 (284)
                      .++.+|||||||+ |..++.+|+ ..+++.|+|||+|+++++.|++++++.| + .+++|+++|+.++.   .+.+.||.
T Consensus        33 ~~~~~vLDiGcG~-G~~~~~lA~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-l-~nv~~~~~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           33 REAPVTLEIGFGM-GASLVAMAK-DRPEQDFLGIEVHSPGVGACLASAHEEG-L-SNLRVMCHDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             SCCCEEEEESCTT-CHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHTT-C-SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred             CCCCeEEEEeeeC-hHHHHHHHH-HCCCCeEEEEEecHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHcCCCChhe
Confidence            3678999999996 667788887 5788999999999999999999999998 4 46999999998852   23467999


Q ss_pred             EEecccccCCh--HHH-----HHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSK--EEK-----VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~--~~k-----~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |++...-.++.  ..+     ..+++.+.+.|||||.+++.+.
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            98753222221  111     2599999999999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.53  E-value=7.5e-14  Score=116.51  Aligned_cols=107  Identities=15%  Similarity=0.167  Sum_probs=88.9

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||+|||+ |..++.+++   .+.+|+++|+|+++++.|++++...| +..+++++++|+.+.....+.||+
T Consensus        29 ~~~~~~~~vldiG~G~-G~~~~~l~~---~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~  103 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGT-GGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKIPDIDI  103 (192)
T ss_dssp             HCCCTTCEEEEESCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTSCCEEE
T ss_pred             cCCCCCCEEEEECCCC-CHHHHHHHH---hcCEEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecCHHHhcccCCCCCE
Confidence            3567889999999998 566677777   33899999999999999999999998 677999999999773333358999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+.....    ....++++.+.+.|+|||.+++...
T Consensus       104 v~~~~~~----~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          104 AVVGGSG----GELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EEESCCT----TCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCch----HHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9976543    4557899999999999999998763

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.52  E-value=5.3e-14  Score=124.02  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             HHHHHHhcC-CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc
Q 036061          119 EYRILDENG-VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV  196 (284)
Q Consensus       119 E~~~l~~~~-~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~  196 (284)
                      +...+.+.. ..++.+|||||||+ |..+..+++   .+. +|+++|+|+++++.|++.+.     ..+++|+++|+.++
T Consensus        32 ~~~~l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~---~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~  102 (253)
T 3g5l_A           32 EWHELKKMLPDFNQKTVLDLGCGF-GWHCIYAAE---HGAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDI  102 (253)
T ss_dssp             HHHHHHTTCCCCTTCEEEEETCTT-CHHHHHHHH---TTCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGC
T ss_pred             hHHHHHHhhhccCCCEEEEECCCC-CHHHHHHHH---cCCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhC
Confidence            333343433 35789999999998 556677777   344 99999999999999999765     25899999999887


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+.||+|+....+.. .++..++++++.+.|+|||.+++..
T Consensus       103 ~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          103 AIEPDAYNVVLSSLALHY-IASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CCCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCeEEEEEchhhhh-hhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            765678999997664422 2567889999999999999999964

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.52  E-value=1.7e-13  Score=119.03  Aligned_cols=150  Identities=15%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             hcCCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCC
Q 036061          125 ENGVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGE  202 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~  202 (284)
                      .....++.+|||+||| + |..++.+|+.  .+.+|+++|+|+++++.|++++...| +  +++++++|+..... ..+.
T Consensus        50 ~~~~~~~~~vLDlG~G~~-G~~~~~la~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~  123 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHT-AMMALMAEKF--FNCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGIIKGVVEGT  123 (230)
T ss_dssp             HTTCCSSCEEEEECCTTT-CHHHHHHHHH--HCCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCSSTTTCCSC
T ss_pred             HhhcCCCCEEEEcCCCHH-HHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchhhhhcccCc
Confidence            3345788999999999 7 5666778872  28999999999999999999999998 4  89999999743322 2257


Q ss_pred             ccEEEecccc-cCC-----------------hHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEEEE
Q 036061          203 YDCIFLAALV-GMS-----------------KEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS  264 (284)
Q Consensus       203 fD~V~~aa~v-~~~-----------------~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~~~  264 (284)
                      ||+|+.+... ...                 .+...++++++.+.|+|||.+++-..++....- .....-.-.||++..
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~l~~~g~~~~~  202 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLN-VIKERGIKLGYSVKD  202 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHH-HHHHHHHHTTCEEEE
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHH-HHHHHHHHcCCceEE
Confidence            9999976321 111                 122378999999999999999986544321100 000000115787766


Q ss_pred             EecCCcceeeeEEEEee
Q 036061          265 VFHPTNEVINSVVLVRK  281 (284)
Q Consensus       265 ~~hP~~~v~nsvi~~r~  281 (284)
                      .....+..+..++...|
T Consensus       203 ~~~~~g~~~~~~l~f~~  219 (230)
T 3evz_A          203 IKFKVGTRWRHSLIFFK  219 (230)
T ss_dssp             EEECCCC-CEEEEEEEC
T ss_pred             EEecCCCeEEEEEEEec
Confidence            65555555555554444

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.52  E-value=5e-14  Score=123.65  Aligned_cols=106  Identities=11%  Similarity=0.253  Sum_probs=87.0

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||||||+ |..+..+++.  .+.+|+++|+|+.+++.|++.+...|  ..+++|+++|+.+++...+.||+|+..
T Consensus        79 ~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGI-GRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTT-THHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCC-CHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            589999999997 5556667662  36799999999999999999988765  257999999998877655579999977


Q ss_pred             ccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+ .++.++..++++++.+.|+|||++++..
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            544 4555567799999999999999999966

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.52  E-value=1e-13  Score=124.25  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V  206 (284)
                      ..++.+|||||||++..+ ..+++  .+..+|+|+|+|+.+++.|++.+...| +..+++|+++|+.+.+. ..+.||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~-~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDL-LKYER--AGIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTH-HHHHH--HTCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHH-HHHHH--CCCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEEECCccccccCCCCCcCEE
Confidence            467899999999986554 55776  244599999999999999999999888 67789999999987665 34579999


Q ss_pred             Eeccccc---CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVG---MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~---~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....++   .+.++..++++++.+.|+|||.+++...
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            8764432   3567888999999999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.52  E-value=1.1e-13  Score=122.86  Aligned_cols=110  Identities=12%  Similarity=0.083  Sum_probs=89.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|+|||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|++++++.| ++++|+++.+|+.+.......||+|+
T Consensus        13 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l~~l~~~~~~D~Iv   89 (225)
T 3kr9_A           13 VSQGAILLDVGSDH-AYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGLAAFEETDQVSVIT   89 (225)
T ss_dssp             SCTTEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEeCCCc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchhhhcccCcCCCEEE
Confidence            46778999999998 566788888 4667899999999999999999999999 78899999999975443222699998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ++..   ...--.++++...++|+|||+|++..-.+
T Consensus        90 iaG~---Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~  122 (225)
T 3kr9_A           90 IAGM---GGRLIARILEEGLGKLANVERLILQPNNR  122 (225)
T ss_dssp             EEEE---CHHHHHHHHHHTGGGCTTCCEEEEEESSC
T ss_pred             EcCC---ChHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            7643   23445789999999999999999976443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=2.3e-14  Score=122.11  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=84.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.   .    .+++|+++|+.+++...+.||+|+...
T Consensus        42 ~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~---~----~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGT-GRWTGHLAS---LGHQIEGLEPATRLVELARQT---H----PSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTT-CHHHHHHHH---TTCCEEEECCCHHHHHHHHHH---C----TTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             CCeEEEecCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHh---C----CCCeEEeCcccccccCCCCeEEEEehh
Confidence            88999999997 556677887   488999999999999999985   2    378999999998776667899999765


Q ss_pred             cc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          211 LV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       211 ~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+ +++.++..++++++.+.|+|||.+++...
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          111 SLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            44 55556889999999999999999999774

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.52  E-value=2.2e-13  Score=127.17  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++.+...| +.++|+|+++|+.+ ..+ ..||+|
T Consensus       179 ~~~~~~~vlDvG~G~G-~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D~v  252 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNG-GMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-PLP-VTADVV  252 (374)
T ss_dssp             CCTTCCEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCS-CCEEEE
T ss_pred             CCCCCCEEEEECCCcC-HHHHHHHH-HCCCCEEEEEeC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCC-cCC-CCCCEE
Confidence            4567899999999974 55666776 467899999999 999999999999998 67899999999875 222 249999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++...+ .++.++..++++++.+.|+|||++++...
T Consensus       253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            876644 56666667999999999999998887553

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.51  E-value=9.4e-14  Score=123.60  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=91.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|+|||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| ++++|+++++|+.+...+...||+|+
T Consensus        19 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~~~~~~~~~D~Iv   95 (230)
T 3lec_A           19 VPKGARLLDVGSDH-AYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLSAFEEADNIDTIT   95 (230)
T ss_dssp             SCTTEEEEEETCST-THHHHHHHH-TTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccccccccCEEE
Confidence            46779999999998 566788888 4566789999999999999999999999 78999999999988665433699998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      ++..   -.+--.++++...+.++++|.|++..-.
T Consensus        96 iaGm---Gg~lI~~IL~~~~~~l~~~~~lIlqp~~  127 (230)
T 3lec_A           96 ICGM---GGRLIADILNNDIDKLQHVKTLVLQPNN  127 (230)
T ss_dssp             EEEE---CHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred             EeCC---chHHHHHHHHHHHHHhCcCCEEEEECCC
Confidence            7643   2355678999999999999999997743

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.51  E-value=5e-14  Score=121.38  Aligned_cols=107  Identities=9%  Similarity=0.159  Sum_probs=84.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc--CCC-ccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK--LGE-YDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~--~~~-fD~  205 (284)
                      ++.+|||+|||++.+ ++.+++  ....+|+++|+|+++++.|+++++..| +. ++++|+++|+.+....  .+. ||+
T Consensus        53 ~~~~vLDlGcGtG~~-~~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSL-GFEALS--RQAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHH-HHHHHH--TTCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHH-HHHHHH--ccCCEEEEEECCHHHHHHHHHHHHHhC-CCccceEEEECCHHHHHHhhccCCCCCE
Confidence            578999999998655 454454  133699999999999999999999998 54 6899999999876543  357 999


Q ss_pred             EEecccccCChHHHHHHHHHH--HhhcCCCcEEEEEecC
Q 036061          206 IFLAALVGMSKEEKVKIIKHI--RKYMKDGGVLLVRSAK  242 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l--~~~l~pGg~lv~r~~~  242 (284)
                      |+++....  .....++++.+  .+.|+|||.+++....
T Consensus       129 I~~~~~~~--~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          129 VFLDPPFH--FNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EEECCCSS--SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EEECCCCC--CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            99875422  35667888998  6679999999987743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=1.3e-13  Score=120.03  Aligned_cols=145  Identities=10%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~f  203 (284)
                      .+.++.+|||||||++ ..+..+|+. .++++|+|+|+|+.+++.+.+.+++.    .++.++++|+.+.   ....+.|
T Consensus        54 ~~~~g~~VLDlGcGtG-~~~~~la~~-~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAASG-TTVSHLADI-VDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTTS-HHHHHHHHH-TTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEECCcCC-HHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccccce
Confidence            3568899999999985 566677773 33679999999999988777776653    3689999998764   1112579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCC-----ccC-CCcEEEEEec--CCcceeee
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEK-----HDL-LDFELLSVFH--PTNEVINS  275 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~-----~dl-~gfe~~~~~h--P~~~v~ns  275 (284)
                      |+|+.+..   ...+...+++++++.|||||.+++....+......+.-+.     +.+ ..|++.....  |..+ .+-
T Consensus       128 D~V~~~~~---~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~~~-~h~  203 (210)
T 1nt2_A          128 DLIYQDIA---QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHR-DHI  203 (210)
T ss_dssp             EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCT-TEE
T ss_pred             eEEEEecc---ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEeeeecCCCCCC-CcE
Confidence            99997632   2244555699999999999999987532210011110010     012 1288888754  5444 455


Q ss_pred             EEEEee
Q 036061          276 VVLVRK  281 (284)
Q Consensus       276 vi~~r~  281 (284)
                      .|++||
T Consensus       204 ~~~~~~  209 (210)
T 1nt2_A          204 FIHAYR  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            777775

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.51  E-value=8.5e-14  Score=119.09  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++    .|.  .+++|+++|+.+. ...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~~~~~~D~v~  112 (218)
T 3ou2_A           44 GNIRGDVLELASGT-GYWTRHLSG---LADRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-TPDRQWDAVF  112 (218)
T ss_dssp             TTSCSEEEEESCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-CCSSCEEEEE
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-CCCCceeEEE
Confidence            35678999999998 566677887   38899999999999999998    452  5899999999886 4456899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ....+ +.+.+....+++++.+.|+|||.+++...
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            77654 55555578999999999999999998764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.51  E-value=1e-13  Score=118.15  Aligned_cols=124  Identities=10%  Similarity=0.272  Sum_probs=92.5

Q ss_pred             CCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCC
Q 036061          106 FPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEK  184 (284)
Q Consensus       106 fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~  184 (284)
                      |.+|..|..+...    +.+. ..++.+|||||||+ |..+..+++   .|. +|+++|+|+.+++.|++.+...    .
T Consensus        23 ~~~~~~~~~~~~~----l~~~-~~~~~~vLdiGcG~-G~~~~~l~~---~~~~~v~~~D~s~~~~~~a~~~~~~~----~   89 (215)
T 2pxx_A           23 YDWFGDFSSFRAL----LEPE-LRPEDRILVLGCGN-SALSYELFL---GGFPNVTSVDYSSVVVAAMQACYAHV----P   89 (215)
T ss_dssp             CCTTCCHHHHHHH----HGGG-CCTTCCEEEETCTT-CSHHHHHHH---TTCCCEEEEESCHHHHHHHHHHTTTC----T
T ss_pred             cccccCHHHHHHH----HHHh-cCCCCeEEEECCCC-cHHHHHHHH---cCCCcEEEEeCCHHHHHHHHHhcccC----C
Confidence            5666666554332    2222 36789999999998 555677777   233 8999999999999999987642    4


Q ss_pred             CeEEEEeccccccccCCCccEEEecccc-cCC-------------hHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          185 RMKFVTCDIMQVKEKLGEYDCIFLAALV-GMS-------------KEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       185 ~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~-------------~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +++++++|+.+++...+.||+|+..... .+.             ..+..++++++.+.|+|||.+++.+..
T Consensus        90 ~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A           90 QLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             TCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            8999999998876555679999965432 111             356689999999999999999998753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.50  E-value=1e-13  Score=124.11  Aligned_cols=110  Identities=17%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCC-C----------------------
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIE-F----------------------  182 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~-l----------------------  182 (284)
                      +..++.+|||||||++ .-++.++.   .|+ +|+|+|+|+.|++.|++.++..+. .                      
T Consensus        52 ~~~~g~~vLDiGCG~G-~~~~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~  127 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPT-IYQVLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK  127 (263)
T ss_dssp             TSCCEEEEEESSCTTC-CGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCCCCceEEEeCCCcc-HHHHHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhH
Confidence            5567899999999984 44444555   555 699999999999999998765320 0                      


Q ss_pred             ----CCCeE-EEEeccccccc----cCCCccEEEecccc---cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          183 ----EKRMK-FVTCDIMQVKE----KLGEYDCIFLAALV---GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       183 ----~~~I~-f~~~D~~~~~~----~~~~fD~V~~aa~v---~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ..+|+ ++++|+.+...    ..+.||+|+.....   ..+.++..++++++++.|||||.|++..
T Consensus       128 ~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          128 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                01344 99999987321    23579999865432   2244778899999999999999999986

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.50  E-value=1.7e-13  Score=126.18  Aligned_cols=146  Identities=17%  Similarity=0.229  Sum_probs=106.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...+ .+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++.+...| +.++|+|+.+|..+ +.+ +.||+|
T Consensus       165 ~~~~-~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D~v  237 (334)
T 2ip2_A          165 DFRG-RSFVDVGGGSG-ELTKAILQ-AEPSARGVMLDR-EGSLGVARDNLSSLL-AGERVSLVGGDMLQ-EVP-SNGDIY  237 (334)
T ss_dssp             CCTT-CEEEEETCTTC-HHHHHHHH-HCTTCEEEEEEC-TTCTHHHHHHTHHHH-HTTSEEEEESCTTT-CCC-SSCSEE
T ss_pred             CCCC-CEEEEeCCCch-HHHHHHHH-HCCCCEEEEeCc-HHHHHHHHHHHhhcC-CCCcEEEecCCCCC-CCC-CCCCEE
Confidence            3345 89999999985 55666776 468899999999 999999999998888 67899999999976 332 579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecC----ccc--cccC----------ccCCCc---cC---CCcEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAK----GAR--AFLY----------PVVEKH---DL---LDFELL  263 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~----glr--~~lY----------p~v~~~---dl---~gfe~~  263 (284)
                      ++...+ .++.++..++++++++.|+|||++++....    +-.  ...+          .....+   ++   .||++.
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  317 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVE  317 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCcee
Confidence            977654 467777789999999999999999887521    000  0000          001111   12   699987


Q ss_pred             EEecCCcceeeeEEEEee
Q 036061          264 SVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       264 ~~~hP~~~v~nsvi~~r~  281 (284)
                      .+....+  ..|+|.++|
T Consensus       318 ~~~~~~~--~~~~i~~~~  333 (334)
T 2ip2_A          318 RIVDLPM--ETRMIVAAR  333 (334)
T ss_dssp             EEEEETT--TEEEEEEEE
T ss_pred             EEEECCC--CCEEEEEEe
Confidence            7765322  368999987

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.50  E-value=9.6e-14  Score=125.31  Aligned_cols=108  Identities=16%  Similarity=0.254  Sum_probs=89.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++.+|||||||+ |..+..+++ ..+ +++|+|+|+|+.+++.|++.+...+.   +++|+++|+.+++.+ +.||+|
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~v   93 (284)
T 3gu3_A           20 ITKPVHIVDYGCGY-GYLGLVLMP-LLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELN-DKYDIA   93 (284)
T ss_dssp             CCSCCEEEEETCTT-THHHHHHTT-TSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCS-SCEEEE
T ss_pred             cCCCCeEEEecCCC-CHHHHHHHH-hCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcCcC-CCeeEE
Confidence            46889999999997 566777887 344 69999999999999999999988873   899999999987653 579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +....++. ..+..++++++.+.|+|||.+++....
T Consensus        94 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           94 ICHAFLLH-MTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEESCGGG-CSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECChhhc-CCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            97665422 245578999999999999999987654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.50  E-value=1.6e-13  Score=117.70  Aligned_cols=105  Identities=14%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|+++++..| + .+++|+++|+.+.....+.||
T Consensus        72 ~l~~~~~~~vLdiG~G~-G~~~~~la~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           72 LLELTPQSRVLEIGTGS-GYQTAILAH---LVQHVCSVERIKGLQWQARRRLKNLD-L-HNVSTRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEecCHHHHHHHHHHHHHcC-C-CceEEEECCcccCCccCCCcc
Confidence            34567889999999997 667788888   37999999999999999999999998 4 479999999987665556899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +|+.......-       .+.+.+.|+|||++++....
T Consensus       146 ~i~~~~~~~~~-------~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          146 AIIVTAAPPEI-------PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEESSBCSSC-------CTHHHHTEEEEEEEEEEECS
T ss_pred             EEEEccchhhh-------hHHHHHhcccCcEEEEEEcC
Confidence            99987654221       13688999999999997754

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.50  E-value=1.7e-13  Score=128.49  Aligned_cols=107  Identities=11%  Similarity=0.195  Sum_probs=90.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V  206 (284)
                      ..+.+|||||||+ |..+..+++ ..|+.+++++|+ |++++.|++.+.+.| +.++|+|+.+|..+..  .+ +.||+|
T Consensus       178 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNT-GKWATQCVQ-YNKEVEVTIVDL-PQQLEMMRKQTAGLS-GSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTT-CHHHHHHHH-HSTTCEEEEEEC-HHHHHHHHHHHTTCT-TGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeC-HHHHHHHHHHHHhcC-cccceEEEEccccccCCCCC-CCcCEE
Confidence            5678999999997 566677777 478999999999 999999999999988 6789999999997642  22 579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...+ .++.++..++++++++.|+|||+|++..
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            977655 5677788899999999999999998865

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.50  E-value=7.5e-14  Score=128.39  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-----CeEEEEecc------cccc-
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK-----RMKFVTCDI------MQVK-  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-----~I~f~~~D~------~~~~-  197 (284)
                      ++.+|||||||+++.+..+++.   .+++|+|+|+|++|++.|++.....+ ...     +++|+++|+      .++. 
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~~~d~~~~~l~~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETIRSDTFVSSVRE  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred             CCCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhcccchhhhhhhc
Confidence            5789999999986655544433   56899999999999999999888776 221     278988888      3322 


Q ss_pred             -ccCCCccEEEeccccc--CChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          198 -EKLGEYDCIFLAALVG--MSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v~--~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                       .+.+.||+|+....++  ++.+++..+++++++.|||||++++.+.+
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             2235799998554332  23356789999999999999999997753

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.50  E-value=1.1e-13  Score=115.49  Aligned_cols=108  Identities=14%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V  206 (284)
                      ..++.+|||+|||+ |..++.+++  .+..+|+++|+|+++++.|+++++..| +.++++|+++|+.+... ..+.||+|
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~i  104 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVS--RGMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLV  104 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcHHHhHHhhcCCCCEE
Confidence            35788999999997 555677777  245799999999999999999999998 67789999999987432 23569999


Q ss_pred             EecccccCChHHHHHHHHHHH--hhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIR--KYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~--~~l~pGg~lv~r~~  241 (284)
                      +.+...  ......++++.+.  +.|+|||++++...
T Consensus       105 ~~~~~~--~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          105 FLDPPY--AKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             EECCSS--HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EECCCC--CcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            976432  1245667788887  99999999999774

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.50  E-value=4.4e-13  Score=128.49  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHH-------HhcCCC-CCCeEEEEec
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIV-------SSDIEF-EKRMKFVTCD  192 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~-------~~~G~l-~~~I~f~~~D  192 (284)
                      ++....+.++.+|||||||+ |..++.+|+.  .|+ +|+|||+|+.+++.|++++       +..| + ..+|+|++||
T Consensus       165 il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~--~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD  240 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAA--TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHHH--CCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECC
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECc
Confidence            34445678999999999997 5666777762  455 5999999999999999865       3456 4 3689999999


Q ss_pred             cccccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+.+...  ..||+||+.....  .++..+.|.++.+.|||||+|++-.
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F--~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF--GPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC--CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             ccCCccccccCCccEEEEccccc--CchHHHHHHHHHHcCCCCcEEEEee
Confidence            98876532  4799999765542  2677788899999999999998754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=2.4e-13  Score=119.23  Aligned_cols=104  Identities=9%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-----CC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-----GE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-----~~  202 (284)
                      ..++.+|||||||+ |..+..+|+   .+.+|+++|+|+.+++.|++.+   +  ..+++|+++|+.+.....     ..
T Consensus        54 ~~~~~~vLD~GcG~-G~~~~~la~---~~~~v~gvD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~  124 (245)
T 3ggd_A           54 FNPELPLIDFACGN-GTQTKFLSQ---FFPRVIGLDVSKSALEIAAKEN---T--AANISYRLLDGLVPEQAAQIHSEIG  124 (245)
T ss_dssp             SCTTSCEEEETCTT-SHHHHHHHH---HSSCEEEEESCHHHHHHHHHHS---C--CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHH---hCCCEEEEECCHHHHHHHHHhC---c--ccCceEEECcccccccccccccccC
Confidence            46788999999997 566777887   3459999999999999999965   2  248999999998754321     24


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+..... ..+.++..++++++.+.|||||++++..
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            8999977655 4566688999999999999999977765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.49  E-value=2e-13  Score=127.36  Aligned_cols=105  Identities=20%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|||||||++ .-++.+|+  ....+|+|+|+|+ +++.|+++++..| +.++++++++|+.+++.+.+.||+|+
T Consensus        62 ~~~~~~VLDiGcGtG-~ls~~la~--~g~~~v~gvD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Iv  136 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTG-ILSMFAAK--AGAKKVLGVDQSE-ILYQAMDIIRLNK-LEDTITLIKGKIEEVHLPVEKVDVII  136 (340)
T ss_dssp             GTTTCEEEEETCTTS-HHHHHHHH--TTCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             hcCCCEEEEeeccCc-HHHHHHHH--cCCCEEEEEChHH-HHHHHHHHHHHcC-CCCcEEEEEeeHHHhcCCCCcEEEEE
Confidence            467899999999974 55677887  2335999999997 9999999999999 78899999999988765556899999


Q ss_pred             eccc--ccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          208 LAAL--VGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       208 ~aa~--v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      ....  ..........++..+.+.|||||+++
T Consensus       137 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            6542  12233566789999999999999998

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.49  E-value=1.7e-13  Score=129.49  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=88.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++++|||||||+ |..++.+|+   .|+ +|+|+|+| ++++.|+++++..| +.++++|+++|+.++..+ +.||+|
T Consensus        61 ~~~~~~VLDlGcGt-G~ls~~la~---~g~~~V~gvD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~I  133 (376)
T 3r0q_C           61 HFEGKTVLDVGTGS-GILAIWSAQ---AGARKVYAVEAT-KMADHARALVKANN-LDHIVEVIEGSVEDISLP-EKVDVI  133 (376)
T ss_dssp             TTTTCEEEEESCTT-THHHHHHHH---TTCSEEEEEESS-TTHHHHHHHHHHTT-CTTTEEEEESCGGGCCCS-SCEEEE
T ss_pred             cCCCCEEEEeccCc-CHHHHHHHh---cCCCEEEEEccH-HHHHHHHHHHHHcC-CCCeEEEEECchhhcCcC-CcceEE
Confidence            47889999999997 566788888   355 99999999 99999999999999 788999999999887655 689999


Q ss_pred             Eecccc--cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV--GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v--~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+.  .........+++.+.+.|+|||++++..
T Consensus       134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            975422  2223457789999999999999998744

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.49  E-value=4.8e-13  Score=124.36  Aligned_cols=150  Identities=16%  Similarity=0.210  Sum_probs=108.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++++...| +.++++|+++|+.+.. + ..||+|
T Consensus       180 ~~~~~~~vLDvG~G~G-~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-~-~~~D~v  253 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKG-GFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFEPL-P-RKADAI  253 (360)
T ss_dssp             CCTTCSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTSCC-S-SCEEEE
T ss_pred             CCccCcEEEEeCCcCc-HHHHHHHH-hCCCCEEEEecC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCCCC-C-CCccEE
Confidence            4567899999999985 55566776 467899999999 999999999999998 6789999999987522 1 249999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecC--c------cccc--c-------CccCCCcc---C---CCcEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAK--G------ARAF--L-------YPVVEKHD---L---LDFEL  262 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~--g------lr~~--l-------Yp~v~~~d---l---~gfe~  262 (284)
                      ++...+ .++.++..++++++.+.|+|||++++....  .      ...+  +       ......++   +   .||++
T Consensus       254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  333 (360)
T 1tw3_A          254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV  333 (360)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence            876654 556666689999999999999998876532  1      0000  0       01111222   1   69999


Q ss_pred             EEEecCCc---ceeeeEEEEeec
Q 036061          263 LSVFHPTN---EVINSVVLVRKP  282 (284)
Q Consensus       263 ~~~~hP~~---~v~nsvi~~r~~  282 (284)
                      ..+....+   ....++|.+||+
T Consensus       334 ~~~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          334 EEVRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             EEEEEEECSSSSCEEEEEEEEEC
T ss_pred             EEEEeCCCCcccCccEEEEEEeC
Confidence            87765332   234789999885

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.49  E-value=2.2e-13  Score=122.20  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| ++++|+++++|+.+...+...||+|+
T Consensus        19 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l~~~~~~~~~D~Iv   95 (244)
T 3gnl_A           19 ITKNERIADIGSDH-AYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGLAVIEKKDAIDTIV   95 (244)
T ss_dssp             CCSSEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCcc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchhhccCccccccEEE
Confidence            46779999999998 556788888 4566799999999999999999999999 78899999999987665433599998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ++..   -.+--.++++...++|++++.||+..-.|
T Consensus        96 iagm---Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           96 IAGM---GGTLIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             EEEE---CHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             EeCC---chHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            7533   23556789999999999999999977433

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.49  E-value=1.6e-13  Score=117.29  Aligned_cols=102  Identities=20%  Similarity=0.297  Sum_probs=85.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..++.+++  .+..+|+++|+|+.+++.|++++...| +.+ ++++++|+.+..  .+.||+|+
T Consensus        58 ~~~~~~vLDiG~G~-G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~~~--~~~fD~i~  130 (205)
T 3grz_A           58 MVKPLTVADVGTGS-GILAIAAHK--LGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLADV--DGKFDLIV  130 (205)
T ss_dssp             CSSCCEEEEETCTT-SHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTTTC--CSCEEEEE
T ss_pred             ccCCCEEEEECCCC-CHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccccC--CCCceEEE
Confidence            46789999999998 556677887  355699999999999999999999998 444 999999997643  36899999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+...    ....++++++.+.|+|||.+++..
T Consensus       131 ~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          131 ANILA----EILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             EESCH----HHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             ECCcH----HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            76544    556789999999999999999864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.49  E-value=1e-13  Score=131.00  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----C-CCCCCeEEEEeccccc-----
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-----I-EFEKRMKFVTCDIMQV-----  196 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----G-~l~~~I~f~~~D~~~~-----  196 (284)
                      ..++.+|||||||+ |..++.+++...++++|+++|+|+.+++.|+++++..     | ....+++|+++|+.++     
T Consensus        81 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGT-GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTT-SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred             CCCCCEEEEecCcc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence            35788999999997 5667778874457899999999999999999998765     4 1236899999999886     


Q ss_pred             -cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 -KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 -~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       +...+.||+|+....+.+ ..++.++++++.+.|||||+|++..
T Consensus       160 ~~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNL-STNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhc-CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             444568999997765432 2467899999999999999999975

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.49  E-value=1.6e-13  Score=117.78  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=84.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+        +++++++|+.+++ ..+.||+|+
T Consensus        41 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           41 LPAGAKILELGCGA-GYQAEAMLA---AGFDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             SCTTCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHH---cCCeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCCcEEEEE
Confidence            35788999999997 556677887   4889999999999999999976        3578899998877 456899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ....+ .++.++..++++++.+.|+|||++++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            77544 55667889999999999999999999764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.49  E-value=3.3e-13  Score=118.42  Aligned_cols=109  Identities=13%  Similarity=0.120  Sum_probs=88.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||++ ..+..+++.  ...+|+++|+|+.+++.|++.+...    .+++|+++|+.+++...+.||
T Consensus        88 ~l~~~~~~~vLDiG~G~G-~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           88 SLPGHGTSRALDCGAGIG-RITKNLLTK--LYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             TSTTCCCSEEEEETCTTT-HHHHHTHHH--HCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSSCEE
T ss_pred             hhcccCCCEEEEECCCcC-HHHHHHHHh--hcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCCCCCeE
Confidence            334567899999999974 555666662  2568999999999999999976543    479999999988765556899


Q ss_pred             EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ +++.++..++++++.+.|+|||.+++..
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            99976544 5555778899999999999999999977

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.48  E-value=4.2e-14  Score=127.40  Aligned_cols=98  Identities=14%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+.+|||||||+ |..+..|++   .+.+|+|+|+|+.|++.|++        ..+++|+++|+.+++.+.+.||+|+.
T Consensus        38 ~~~~~vLDvGcGt-G~~~~~l~~---~~~~v~gvD~s~~ml~~a~~--------~~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGS-GQASLGLAE---FFERVHAVDPGEAQIRQALR--------HPRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTT-TTTHHHHHT---TCSEEEEEESCHHHHHTCCC--------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCC-CHHHHHHHH---hCCEEEEEeCcHHhhhhhhh--------cCCceeehhhhhhhcccCCcccEEEE
Confidence            4567999999998 566788887   67899999999999987764        14799999999988877778999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..+++-  +..+++++++|.|||||+|++-.
T Consensus       106 ~~~~h~~--~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHWF--DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTTC--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhHh--hHHHHHHHHHHHcCCCCEEEEEE
Confidence            6555553  34579999999999999998855

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.48  E-value=1.5e-13  Score=120.97  Aligned_cols=105  Identities=16%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.+ ..  ...+++|+++|+.+++...+.||+|
T Consensus        36 ~~~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~-~~--~~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           36 PKGEEPVFLELGVGT-GRIALPLIA---RGYRYIALDADAAMLEVFRQKI-AG--VDRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             CSSSCCEEEEETCTT-STTHHHHHT---TTCEEEEEESCHHHHHHHHHHT-TT--SCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCcC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHh-hc--cCCceEEEEcccccCCCCCCCeeEE
Confidence            346789999999998 455677877   4789999999999999999988 32  2468999999998876555679999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +....++.- .+..++++++.+.|+|||.+++.
T Consensus       109 ~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          109 IVVHLWHLV-PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCchhhc-CCHHHHHHHHHHHCCCCcEEEEE
Confidence            976544322 35678999999999999999886

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.48  E-value=1.6e-13  Score=119.88  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=83.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC--CCCeEEEEecccccc---------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF--EKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l--~~~I~f~~~D~~~~~---------  197 (284)
                      .++++||+||||   +|++++|+  .++++|+++|.|++..+.|++++++.| +  .++|+++.||+.+..         
T Consensus        29 ~~a~~VLEiGtG---ySTl~lA~--~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           29 EEAEVILEYGSG---GSTVVAAE--LPGKHVTSVESDRAWARMMKAWLAANP-PAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHCSEEEEESCS---HHHHHHHT--STTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             hCCCEEEEECch---HHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCceEEEEeCchhhhcccccccch
Confidence            568999999996   79999998  348999999999999999999999999 7  789999999976531         


Q ss_pred             --------------c-cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 --------------E-KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --------------~-~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                                    . ..+.||+||+++-.    .  ...+..+.++|+|||+|++.+
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k----~--~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF----R--VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSS----H--HHHHHHHHHHCSSCEEEEETT
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCC----c--hhHHHHHHHhcCCCeEEEEeC
Confidence                          0 12579999999753    2  356777889999999999876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.48  E-value=2.9e-13  Score=121.79  Aligned_cols=109  Identities=13%  Similarity=0.187  Sum_probs=87.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEecccccc---ccCCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVK---EKLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~---~~~~~f  203 (284)
                      .++.+|||||||+ |..+..+++   .|.+|+|+|+|+.+++.|++.+...+.  ...++.+..+|+.+++   ...+.|
T Consensus        56 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             cCCCEEEEecCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCe
Confidence            4678999999997 566788888   578999999999999999998755431  0147899999998876   445689


Q ss_pred             cEEEec-c-cccCCh-----HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLA-A-LVGMSK-----EEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~a-a-~v~~~~-----~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+.. . +-++..     ++..++++++.+.|||||++++...
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999975 3 324433     6688999999999999999998663

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.48  E-value=2.7e-13  Score=119.50  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=84.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCC------------------------
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIE------------------------  181 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~------------------------  181 (284)
                      ...++.+|||||||++ ..++.+++   .+. +|+++|+|+.+++.|++.+...+.                        
T Consensus        53 ~~~~~~~vLDlGcG~G-~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
T 2i62_A           53 GAVKGELLIDIGSGPT-IYQLLSAC---ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK  128 (265)
T ss_dssp             SSCCEEEEEEESCTTC-CGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred             cccCCCEEEEECCCcc-HHHHHHhh---cccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence            4567889999999985 45566666   455 999999999999999998865431                        


Q ss_pred             ---CCCCe-EEEEeccccccc-cC---CCccEEEeccccc---CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          182 ---FEKRM-KFVTCDIMQVKE-KL---GEYDCIFLAALVG---MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       182 ---l~~~I-~f~~~D~~~~~~-~~---~~fD~V~~aa~v~---~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         +.+++ +++++|+.+... ..   +.||+|+....+.   .+.++..++++++.+.|+|||.+++...
T Consensus       129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence               00128 999999987543 23   5799998665431   1345788999999999999999999763

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.48  E-value=3.1e-13  Score=120.55  Aligned_cols=109  Identities=14%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             CC-CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCcc
Q 036061          128 VV-NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYD  204 (284)
Q Consensus       128 ~~-~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD  204 (284)
                      .. ++.+|||+|||+ |..++.+|++  ...+|+++|+|+.+++.|++++...| +.++++++++|+.+....  .+.||
T Consensus        46 ~~~~~~~vLDlG~G~-G~~~~~la~~--~~~~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~~~~~~~~~~fD  121 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGN-GIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKKITDLIPKERAD  121 (259)
T ss_dssp             CCSSCCEEEETTCTT-THHHHHHHTT--CCCEEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGGGGGTSCTTCEE
T ss_pred             CCCCCCEEEEcCCch-hHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHHhhhhhccCCcc
Confidence            45 789999999998 5566778772  33499999999999999999999999 788999999999987643  35799


Q ss_pred             EEEecccc-c-----C-------------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV-G-----M-------------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v-~-----~-------------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+.+... .     .             ......++++.+.+.|+|||++++-.
T Consensus       122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            99985321 0     0             01234679999999999999999854

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.48  E-value=1.2e-13  Score=122.15  Aligned_cols=149  Identities=16%  Similarity=0.265  Sum_probs=107.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||+|||+ |..++.+++...++.+|+++|+|+++++.|+++++..| +.++++++++|+.+.. ..+.||
T Consensus        88 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-~~~~~D  164 (255)
T 3mb5_A           88 YAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYEGI-EEENVD  164 (255)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGGCC-CCCSEE
T ss_pred             hhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhhcc-CCCCcC
Confidence            33567889999999998 55667777744678999999999999999999999999 6778999999998643 335699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc---------ccccc--CccCCCcc--CCCcEEEE-EecCCc
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG---------ARAFL--YPVVEKHD--LLDFELLS-VFHPTN  270 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g---------lr~~l--Yp~v~~~d--l~gfe~~~-~~hP~~  270 (284)
                      +|+++.      ++..++++++.+.|+|||.+++-....         ++..-  |-.++..+  ...|++.. ..+|..
T Consensus       165 ~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~~~~~~~~rp~~  238 (255)
T 3mb5_A          165 HVILDL------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRT  238 (255)
T ss_dssp             EEEECS------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCCCCCEEEETTEEEECS
T ss_pred             EEEECC------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEeeeeeEecCCccCCCc
Confidence            999742      334578999999999999999876321         12222  22222222  24565542 256766


Q ss_pred             cee-ee--EEEEeec
Q 036061          271 EVI-NS--VVLVRKP  282 (284)
Q Consensus       271 ~v~-ns--vi~~r~~  282 (284)
                      ..+ ++  +++|||.
T Consensus       239 ~~~~htg~l~~ark~  253 (255)
T 3mb5_A          239 TALVHTGYITFARRI  253 (255)
T ss_dssp             CCCCCSCEEEEEEBC
T ss_pred             ccccccEEEEEEEEe
Confidence            533 44  7788884

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.48  E-value=4.2e-13  Score=111.08  Aligned_cols=137  Identities=14%  Similarity=0.171  Sum_probs=95.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.    .   .++++.++|   .+...+.||+|+
T Consensus        15 ~~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~---~~v~~~~~d---~~~~~~~~D~v~   80 (170)
T 3i9f_A           15 EGKKGVIVDYGCGN-GFYCKYLLE---FATKLYCIDINVIALKEVKEK----F---DSVITLSDP---KEIPDNSVDFIL   80 (170)
T ss_dssp             SSCCEEEEEETCTT-CTTHHHHHT---TEEEEEEECSCHHHHHHHHHH----C---TTSEEESSG---GGSCTTCEEEEE
T ss_pred             cCCCCeEEEECCCC-CHHHHHHHh---hcCeEEEEeCCHHHHHHHHHh----C---CCcEEEeCC---CCCCCCceEEEE
Confidence            46788999999997 556677777   335999999999999999997    2   489999999   344446799999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCcc----CCCc----cCCCcEEEEEecCCcceeeeEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPV----VEKH----DLLDFELLSVFHPTNEVINSVVLV  279 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~----v~~~----dl~gfe~~~~~hP~~~v~nsvi~~  279 (284)
                      ....+.. .++..++++++.+.|+|||.+++.....-.....|.    .+.+    -+.||++.........-  -.+++
T Consensus        81 ~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~~~--~~l~~  157 (170)
T 3i9f_A           81 FANSFHD-MDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYH--FGLVL  157 (170)
T ss_dssp             EESCSTT-CSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSSTTE--EEEEE
T ss_pred             Eccchhc-ccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCCce--EEEEE
Confidence            7655422 246788999999999999999997632111111111    1111    12499998887765433  24445


Q ss_pred             ee
Q 036061          280 RK  281 (284)
Q Consensus       280 r~  281 (284)
                      ++
T Consensus       158 ~~  159 (170)
T 3i9f_A          158 KR  159 (170)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.48  E-value=9.8e-13  Score=117.10  Aligned_cols=147  Identities=12%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--c-CCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--K-LGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~-~~~f  203 (284)
                      .+.++.+|||+||||++ .+..+|+...++++|+++|+|+.+++...+.+++.    .+++++++|+.....  . .+.|
T Consensus        73 ~l~~g~~VLDlG~GtG~-~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGT-TISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             SCCTTCEEEEETCTTSH-HHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEEeecCCH-HHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccce
Confidence            46889999999999965 55667775567889999999999986665555443    379999999976432  1 2479


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc-ccccCccCCCc----cC--CCcEEEEEec--CCcceee
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA-RAFLYPVVEKH----DL--LDFELLSVFH--PTNEVIN  274 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl-r~~lYp~v~~~----dl--~gfe~~~~~h--P~~~v~n  274 (284)
                      |+||.+...   ..+..-+...+.+.|||||.|++....+- ..-..|.-...    .+  .||+++...+  |..+ ..
T Consensus       148 D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~-~h  223 (232)
T 3id6_C          148 DVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDK-DH  223 (232)
T ss_dssp             EEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCS-SC
T ss_pred             EEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcC-ce
Confidence            999977543   23333344556669999999998742211 11111211111    12  4899998876  5544 55


Q ss_pred             eEEEEeec
Q 036061          275 SVVLVRKP  282 (284)
Q Consensus       275 svi~~r~~  282 (284)
                      ..|++|++
T Consensus       224 ~~v~~~~~  231 (232)
T 3id6_C          224 AIVLSKYK  231 (232)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            57788774

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.48  E-value=1.7e-13  Score=120.55  Aligned_cols=110  Identities=15%  Similarity=0.253  Sum_probs=87.9

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      .++......++.+|||||||+ |..+..+++ ..++++|+++|+|+.+++.|++.    .   .+++|+++|+.+++ ..
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~----~---~~~~~~~~d~~~~~-~~   93 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGP-GNSTELLTD-RYGVNVITGIDSDDDMLEKAADR----L---PNTNFGKADLATWK-PA   93 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTT-THHHHHHHH-HHCTTSEEEEESCHHHHHHHHHH----S---TTSEEEECCTTTCC-CS
T ss_pred             HHHHhcCCCCCCEEEEecCcC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHh----C---CCcEEEECChhhcC-cc
Confidence            344455567889999999997 455666776 34689999999999999999986    2   47899999998876 45


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.||+|+....+++- .+..++++++.+.|+|||.+++...
T Consensus        94 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           94 QKADLLYANAVFQWV-PDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             SCEEEEEEESCGGGS-TTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCcCEEEEeCchhhC-CCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            679999976654322 4677899999999999999999763

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.48  E-value=1.5e-13  Score=122.46  Aligned_cols=159  Identities=15%  Similarity=0.164  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 036061          114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI  193 (284)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~  193 (284)
                      +|+-.-...+....++++++|||+|||+ |.++..+|+...++++|+++|+++++++.+++++++.+    ++..+.+|+
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~  135 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDA  135 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCT
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEec
Confidence            4443333333445679999999999997 78888899866799999999999999999999877654    689999998


Q ss_pred             ccccc---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCcc--CC--CccC--CCcEEE
Q 036061          194 MQVKE---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPV--VE--KHDL--LDFELL  263 (284)
Q Consensus       194 ~~~~~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~--v~--~~dl--~gfe~~  263 (284)
                      .+...   ....+|+||.+...   .+++..++.++.+.|||||.+++.. +.......-|.  ..  ...|  .||++.
T Consensus       136 ~~p~~~~~~~~~vDvVf~d~~~---~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~  212 (233)
T 4df3_A          136 RFPEKYRHLVEGVDGLYADVAQ---PEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIK  212 (233)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEE
T ss_pred             cCccccccccceEEEEEEeccC---ChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEE
Confidence            75332   23469999865332   3677889999999999999998753 11111111010  00  0122  599987


Q ss_pred             EEe--cCCcceeeeEEEEee
Q 036061          264 SVF--HPTNEVINSVVLVRK  281 (284)
Q Consensus       264 ~~~--hP~~~v~nsvi~~r~  281 (284)
                      ...  .|..+ -...||+|-
T Consensus       213 e~i~L~pf~~-~H~lv~~~~  231 (233)
T 4df3_A          213 DVVHLDPFDR-DHAMIYAVM  231 (233)
T ss_dssp             EEEECTTTST-TEEEEEECC
T ss_pred             EEEccCCCCC-ceEEEEEEE
Confidence            765  46433 345566653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.48  E-value=5e-13  Score=121.10  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             CCCCEEEEeccCC---ChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          129 VNPKKVAFVGSGP---MPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~---lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      ....+|||||||+   + ..+..+++ ..++++|+++|+||.+++.|++++..    ..+++|+++|+.+..        
T Consensus        76 ~~~~~vLDlGcG~pt~G-~~~~~~~~-~~p~~~v~~vD~sp~~l~~Ar~~~~~----~~~v~~~~~D~~~~~~~~~~~~~  149 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQ-NTHEVAQS-VNPDARVVYVDIDPMVLTHGRALLAK----DPNTAVFTADVRDPEYILNHPDV  149 (274)
T ss_dssp             TCCCEEEEETCCSCCSS-CHHHHHHH-HCTTCEEEEEESSHHHHHHHHHHHTT----CTTEEEEECCTTCHHHHHHSHHH
T ss_pred             cCCCEEEEECCCCCCCC-hHHHHHHH-hCCCCEEEEEECChHHHHHHHHhcCC----CCCeEEEEeeCCCchhhhccchh
Confidence            3458999999996   5 44444444 46899999999999999999998743    258999999997632        


Q ss_pred             ---ccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          198 ---EKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         .+...||+|++...+ .++.++..++++++++.|+|||.|++...
T Consensus       150 ~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          150 RRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence               233579999877654 44555688999999999999999998774

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.47  E-value=4.2e-13  Score=119.02  Aligned_cols=110  Identities=12%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh------cCCCCCCeEEEEecccc-cc--c
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS------DIEFEKRMKFVTCDIMQ-VK--E  198 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~------~G~l~~~I~f~~~D~~~-~~--~  198 (284)
                      ..++.+|||||||+ |..++.||+ ..+++.|+|||+|+.+++.|++++++      .+  ..+++|+++|+.+ ++  .
T Consensus        44 ~~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~--~~nv~~~~~d~~~~l~~~~  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGY-GGLLVELSP-LFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG--FQNIACLRSNAMKHLPNFF  119 (235)
T ss_dssp             --CCEEEEEETCTT-CHHHHHHGG-GSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC--CTTEEEEECCTTTCHHHHC
T ss_pred             cCCCCeEEEEccCC-cHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC--CCeEEEEECcHHHhhhhhC
Confidence            35678999999997 566778887 56889999999999999999998865      34  2589999999987 43  2


Q ss_pred             cCCCccEEEecccccCCh--HHH-----HHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGMSK--EEK-----VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~--~~k-----~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+.||.|++...-.+.+  ..|     ..+++.+.+.|+|||.|++.+.
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            346799998643211111  111     4699999999999999999764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.47  E-value=1.2e-13  Score=115.69  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD  204 (284)
                      .++.+|||+|||++ ..++.+++  .+..+|+++|+|+++++.|++++...| +.++++|+++|+.+....    .+.||
T Consensus        43 ~~~~~vLD~GcG~G-~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSG-GLAIEAVS--RGMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTC-HHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCccC-HHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhC-CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            57889999999985 55565666  355799999999999999999999988 667899999999874431    45799


Q ss_pred             EEEecccccCChHHHHHHHHHH--HhhcCCCcEEEEEecC
Q 036061          205 CIFLAALVGMSKEEKVKIIKHI--RKYMKDGGVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l--~~~l~pGg~lv~r~~~  242 (284)
                      +|+++....  .....++++.+  .+.|+|||++++....
T Consensus       119 ~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            999774321  13345566777  8889999999988743

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.47  E-value=7.4e-14  Score=122.46  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=81.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc--cccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV--KEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~--~~~~~~fD~V  206 (284)
                      .++.+|||||||++ ..+..+++   .|++|+|+|+|+++++.|++.          ++++++|+.+.  +...+.||+|
T Consensus        40 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRG-EFLELCKE---EGIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTT-HHHHHHHH---HTCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCC-HHHHHHHh---CCCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEE
Confidence            57799999999985 45677887   478999999999999999874          78999999875  3344679999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....+ +++.++..++++++.+.|||||.+++...
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            976554 55656778999999999999999999774

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.46  E-value=1.4e-13  Score=124.62  Aligned_cols=103  Identities=15%  Similarity=0.074  Sum_probs=85.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++.+|||+|||+++ -++.+|+   .++ +|+|+|+|+.+++.|+++++..| +.++++|+++|+.+... .+.||+|
T Consensus       123 ~~~~~~VLDlgcG~G~-~~~~la~---~~~~~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~~~~-~~~fD~V  196 (278)
T 2frn_A          123 AKPDELVVDMFAGIGH-LSLPIAV---YGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPG-ENIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTT-THHHHHH---HTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCC-CSCEEEE
T ss_pred             CCCCCEEEEecccCCH-HHHHHHH---hCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHHhcc-cCCccEE
Confidence            3678999999999855 5677777   233 79999999999999999999999 67789999999998776 4579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++..     ....++++.+.+.|+|||.+++.+.
T Consensus       197 i~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          197 LMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence            98643     2335789999999999999998774

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.46  E-value=3.6e-14  Score=120.77  Aligned_cols=108  Identities=12%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD  204 (284)
                      .++.+|||+|||+ |..++.+++ ..++++|+++|+|+.+++.|++++...| .  +++|+++|+.+...+    .+.||
T Consensus        29 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGS-GCIAVSIAL-ACPGVSVTAVDLSMDALAVARRNAERFG-A--VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSB-CHHHHHHHH-HCTTEEEEEEECC----------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHhC-C--ceEEEEcchHhhhhhhhhccCccc
Confidence            6789999999997 556677777 4678999999999999999999999888 4  899999999873332    26899


Q ss_pred             EEEecccc-------cCChHH------------------HHHHHHHHHhhcCCCcE-EEEEec
Q 036061          205 CIFLAALV-------GMSKEE------------------KVKIIKHIRKYMKDGGV-LLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v-------~~~~~~------------------k~~il~~l~~~l~pGg~-lv~r~~  241 (284)
                      +|+.+...       .++...                  ..++++++.+.|+|||+ +++...
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            99975311       111111                  17899999999999999 666543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=8.4e-13  Score=109.45  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||+|||+ |..+..+++   ++.+|+++|+|+.+++.|+++++..| + .+++++++|+.+ ....+.||+
T Consensus        31 ~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~-~~~~~~~D~  103 (183)
T 2yxd_A           31 LNLNKDDVVVDVGCGS-GGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KNCQIIKGRAED-VLDKLEFNK  103 (183)
T ss_dssp             HCCCTTCEEEEESCCC-SHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-C-CSEEEEESCHHH-HGGGCCCSE
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CcEEEEECCccc-cccCCCCcE
Confidence            3557888999999997 556677776   88999999999999999999999998 4 679999999987 333357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+....     ....++++.+.+.  |||.+++...
T Consensus       104 i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          104 AFIGGT-----KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             EEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             EEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence            997644     4567889999988  9999998763

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=7.5e-14  Score=129.68  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=100.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~  208 (284)
                      +.+||+||||. |..+..+++ ..++.+|++||+|+++++.|++.+...+  ..+++++++|+.++....  +.||+||+
T Consensus        90 ~~rVLdIG~G~-G~la~~la~-~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGA-CTMARYFAD-VYPQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGG-GHHHHHHHH-HSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCc-CHHHHHHHH-HCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            44999999996 666777777 4688999999999999999999875432  368999999998875432  57999998


Q ss_pred             cccccCChHH---HHHHHHHHHhhcCCCcEEEEEecCccccccCccCC--CccC-CCcEEEEEec-C----CcceeeeEE
Q 036061          209 AALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE--KHDL-LDFELLSVFH-P----TNEVINSVV  277 (284)
Q Consensus       209 aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~--~~dl-~gfe~~~~~h-P----~~~v~nsvi  277 (284)
                      +..-+.....   ..++++.+++.|+|||++++....+..   ++...  ...+ .-|..+..++ |    ..+.-|.|+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~---~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl  242 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSD---LRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIIL  242 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTT---CHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcc---hHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEE
Confidence            7643221111   268999999999999999998753211   00000  0112 1254444443 2    235779999


Q ss_pred             EEee
Q 036061          278 LVRK  281 (284)
Q Consensus       278 ~~r~  281 (284)
                      +|.+
T Consensus       243 ~As~  246 (317)
T 3gjy_A          243 MGSD  246 (317)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9977

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.45  E-value=6.3e-13  Score=118.33  Aligned_cols=115  Identities=16%  Similarity=0.056  Sum_probs=87.8

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH------HHHHHHHHHHhcCCCCCCeEEEEec---
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA------ANDVARQIVSSDIEFEKRMKFVTCD---  192 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~------ai~~Ar~~~~~~G~l~~~I~f~~~D---  192 (284)
                      ++......++.+|||||||+ |..+..++++..++++|+++|+|+.      +++.|++.+...| +.++++|+++|   
T Consensus        35 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           35 IAEAWQVKPGEKILEIGCGQ-GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEECSCCTT
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEECChhh
Confidence            34445678889999999997 5556777773335689999999997      9999999999988 67799999998   


Q ss_pred             cccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+++...+.||+|+....+ +.+  +...+++.+.+.++|||.+++..
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             hccCCCCCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence            44444445689999976544 332  33447778888878899999865

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.45  E-value=2e-12  Score=120.66  Aligned_cols=116  Identities=14%  Similarity=0.102  Sum_probs=92.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||+|||++ .-++.+|....++.+|+|+|+|+.+++.|+++++..| +. +++|.++|+.+++.....||
T Consensus       198 ~~~~~~~~~vLD~gcGsG-~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-~i~~~~~D~~~~~~~~~~~D  274 (354)
T 3tma_A          198 LADARPGMRVLDPFTGSG-TIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-WIRFLRADARHLPRFFPEVD  274 (354)
T ss_dssp             HTTCCTTCCEEESSCTTS-HHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-TCEEEECCGGGGGGTCCCCS
T ss_pred             HhCCCCCCEEEeCCCCcC-HHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEeCChhhCccccCCCC
Confidence            345578899999999985 4556677632367999999999999999999999999 56 99999999999877667799


Q ss_pred             EEEecccccCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          205 CIFLAALVGMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       205 ~V~~aa~v~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +|+.+..-+...       ..+.++++.+.+.|+|||.+++-+.+.
T Consensus       275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            999865332211       224789999999999999999987643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.45  E-value=5.9e-13  Score=115.84  Aligned_cols=103  Identities=17%  Similarity=0.300  Sum_probs=85.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   . .+|+++|+|+.+++.|++.+...+   .+++++++|+.+.+.+ +.||+|++
T Consensus        32 ~~~~~vLdiG~G~-G~~~~~l~~---~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGT-GTATLLLAD---H-YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVDAITI  102 (243)
T ss_dssp             CTTCEEEEESCTT-CHHHHHHTT---T-SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHhh---C-CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcCEEEE
Confidence            5668999999998 555677777   3 899999999999999999998877   3799999999886654 67999997


Q ss_pred             cc-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AA-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .. .+ .+ +.++..++++++.+.|+|||.+++..
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            53 22 33 55778899999999999999999843

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.45  E-value=1.1e-13  Score=122.55  Aligned_cols=100  Identities=10%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCC-
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLG-  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~-  201 (284)
                      .++.+|||||||+ |..+++||+.   ..++++|++||+|+++++.|+      + +..+|+|+++|+.+.   +.... 
T Consensus        80 ~~~~~VLDiG~Gt-G~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~-~~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           80 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S-DMENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             cCCCEEEEEeCCC-CHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------c-cCCceEEEECcchhHHHHHhhccC
Confidence            3578999999997 6677788883   257899999999999999887      2 346899999999874   32223 


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHh-hcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRK-YMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~-~l~pGg~lv~r~  240 (284)
                      .||+|++++..    .+..+++.++.+ .|||||++++.+
T Consensus       152 ~fD~I~~d~~~----~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNAH----ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESSC----SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCch----HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            69999987653    356679999997 999999999965

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.44  E-value=4.7e-13  Score=124.08  Aligned_cols=114  Identities=19%  Similarity=0.310  Sum_probs=92.7

Q ss_pred             HHhcCCCC-CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cC
Q 036061          123 LDENGVVN-PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KL  200 (284)
Q Consensus       123 l~~~~~~~-~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~  200 (284)
                      +..+...+ +.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++.+...| +.++++|+.+|..+.+. ..
T Consensus       171 l~~~~~~~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~  246 (352)
T 3mcz_A          171 VSELGVFARARTVIDLAGGHG-TYLAQVLR-RHPQLTGQIWDL-PTTRDAARKTIHAHD-LGGRVEFFEKNLLDARNFEG  246 (352)
T ss_dssp             HHTCGGGTTCCEEEEETCTTC-HHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CGGGEEEEECCTTCGGGGTT
T ss_pred             HHhCCCcCCCCEEEEeCCCcC-HHHHHHHH-hCCCCeEEEEEC-HHHHHHHHHHHHhcC-CCCceEEEeCCcccCcccCC
Confidence            33333455 899999999985 55666776 478899999999 899999999999988 67899999999987542 23


Q ss_pred             CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.||+|++...+ .++.++..++++++++.|+|||++++..
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            469999976644 5677778999999999999999998865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.44  E-value=4.4e-13  Score=125.22  Aligned_cols=110  Identities=22%  Similarity=0.384  Sum_probs=87.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEecccccccc--CCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEF-EKRMKFVTCDIMQVKEK--LGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l-~~~I~f~~~D~~~~~~~--~~~  202 (284)
                      ...+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++++...  | + ..+++|+++|+.+....  .+.
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~-~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEECCHHHHHHhccCCC
Confidence            35779999999996 667788887 456789999999999999999998753  4 3 36899999999876433  257


Q ss_pred             ccEEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+++..-.....+   ..++++.+.+.|+|||++++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9999987642221122   4789999999999999999974

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.44  E-value=4.4e-13  Score=115.50  Aligned_cols=105  Identities=10%  Similarity=0.074  Sum_probs=82.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~  208 (284)
                      ++.+|||+|||++ ..++.+++  ....+|+++|+|+++++.|+++++..| + ++++|+++|+.+... ..+.||+|++
T Consensus        54 ~~~~vLDlgcG~G-~~~~~l~~--~~~~~V~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSG-ALGLEALS--RYAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTC-HHHHHHHH--TTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcC-HHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            5789999999985 55565555  123599999999999999999999998 4 789999999987433 3357999998


Q ss_pred             cccccCChHHHHHHHHHHHh--hcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~  241 (284)
                      +...+  .....++++.+.+  .|+|||++++...
T Consensus       129 ~~p~~--~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFR--RGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSS--TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCC--CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            75422  2456678888876  4999999988764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=2.6e-13  Score=121.69  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCCCCCCeEEEEeccccccc------
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIEFEKRMKFVTCDIMQVKE------  198 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~l~~~I~f~~~D~~~~~~------  198 (284)
                      ..++.+|||+|||+ |..++.+|+ ..++.+|+++|+|+++++.|++++..   .| +.++++++++|+.+...      
T Consensus        34 ~~~~~~VLDlG~G~-G~~~l~la~-~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           34 DDRACRIADLGAGA-GAAGMAVAA-RLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             CCSCEEEEECCSSS-SHHHHHHHH-HCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHHHHHHTT
T ss_pred             ccCCCEEEEeCChH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhhhhhhhc
Confidence            45778999999997 556677777 46789999999999999999999998   88 67789999999987632      


Q ss_pred             -cCCCccEEEeccc-cc----------------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 -KLGEYDCIFLAAL-VG----------------MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~-v~----------------~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ..+.||+|+.+.- ..                ........+++.+.+.|+|||.+++-.
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             2357999998732 11                011225689999999999999998865

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.44  E-value=3.4e-13  Score=116.97  Aligned_cols=105  Identities=20%  Similarity=0.148  Sum_probs=83.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEeccccccccCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF----EKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l----~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..++.+|||||||++ ..+..+++...+..+|+++|+|+.+++.|++++.+.| +    .++++++++|+.+.....+.|
T Consensus        75 ~~~~~~vLDiG~G~G-~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGSG-ILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTTS-HHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCcC-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECCcccCcccCCCc
Confidence            578899999999985 5556677633455799999999999999999998876 3    368999999998654444679


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+......       .+++++.+.|||||++++...
T Consensus       153 D~i~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          153 DAIHVGAAAP-------VVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEECSBBS-------SCCHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCchH-------HHHHHHHHhcCCCcEEEEEEe
Confidence            9999776541       245788999999999999764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=4.7e-13  Score=116.58  Aligned_cols=102  Identities=15%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   .|++|+++|+|+.+++.|++..   .  ..+++|+++|+.+++...+.||+|+.
T Consensus        52 ~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           52 KKEAEVLDVGCGD-GYGTYKLSR---TGYKAVGVDISEVMIQKGKERG---E--GPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHTTT---C--BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhc---c--cCCceEEEcchhcCCCCCCCccEEEE
Confidence            5788999999997 566777888   4889999999999999999863   2  36899999999987766678999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+.. .++..++++++.+.|+|||.+++..
T Consensus       123 ~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          123 INSLEW-TEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             ESCTTS-SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHhh-ccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            654422 2566789999999999999999976

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.44  E-value=2.3e-13  Score=118.19  Aligned_cols=100  Identities=16%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+.+++.|++.+..      +++|+++|+.+.. ..+.||+|+.
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~~-~~~~fD~v~~  109 (250)
T 2p7i_A           41 FRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGRLKD------GITYIHSRFEDAQ-LPRRYDNIVL  109 (250)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGCC-CSSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHH---hCCcEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHcC-cCCcccEEEE
Confidence            4678999999997 566677877   467999999999999999985322      7999999998863 3467999997


Q ss_pred             cccc-cCChHHHHHHHHHHH-hhcCCCcEEEEEec
Q 036061          209 AALV-GMSKEEKVKIIKHIR-KYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~-~~l~pGg~lv~r~~  241 (284)
                      ...+ +.  .+..++++++. +.|||||.+++...
T Consensus       110 ~~~l~~~--~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          110 THVLEHI--DDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhHHHhh--cCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            6654 33  35578999999 99999999999774

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.44  E-value=9.4e-13  Score=123.23  Aligned_cols=146  Identities=21%  Similarity=0.227  Sum_probs=106.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .....+|+|||||+ |..++.+++ .+|+.+++.+|. |++++.|++.+...+  .+||+|+.+|..+.  +..++|+|+
T Consensus       177 ~~~~~~v~DvGgG~-G~~~~~l~~-~~p~~~~~~~dl-p~v~~~a~~~~~~~~--~~rv~~~~gD~~~~--~~~~~D~~~  249 (353)
T 4a6d_A          177 LSVFPLMCDLGGGA-GALAKECMS-LYPGCKITVFDI-PEVVWTAKQHFSFQE--EEQIDFQEGDFFKD--PLPEADLYI  249 (353)
T ss_dssp             GGGCSEEEEETCTT-SHHHHHHHH-HCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTTS--CCCCCSEEE
T ss_pred             cccCCeEEeeCCCC-CHHHHHHHH-hCCCceeEeccC-HHHHHHHHHhhhhcc--cCceeeecCccccC--CCCCceEEE
Confidence            46678999999997 555667777 589999999998 889999999887554  58999999998653  345789999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec----Cc---cccccC---cc--C---C--Cc---cC---CCcEEE
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA----KG---ARAFLY---PV--V---E--KH---DL---LDFELL  263 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~----~g---lr~~lY---p~--v---~--~~---dl---~gfe~~  263 (284)
                      +...+ .++.++..++|+++++.|+|||++++.+.    .+   ....+|   ..  .   +  .+   ++   .||+..
T Consensus       250 ~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v  329 (353)
T 4a6d_A          250 LARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDF  329 (353)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred             eeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence            77654 67888889999999999999999888662    11   000000   00  0   0  01   22   699986


Q ss_pred             EEecCCcceeeeEEEEeec
Q 036061          264 SVFHPTNEVINSVVLVRKP  282 (284)
Q Consensus       264 ~~~hP~~~v~nsvi~~r~~  282 (284)
                      .+ +|.+.. .++|+|||+
T Consensus       330 ~v-~~~~~~-~~~i~ArKg  346 (353)
T 4a6d_A          330 QF-KKTGAI-YDAILARKG  346 (353)
T ss_dssp             EE-ECCSSS-CEEEEEECC
T ss_pred             EE-EEcCCc-eEEEEEEec
Confidence            55 566544 579999996

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.44  E-value=3.6e-12  Score=122.97  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=87.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHH-------HHHHHhcCCCC-CCeEEEEecc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVA-------RQIVSSDIEFE-KRMKFVTCDI  193 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~A-------r~~~~~~G~l~-~~I~f~~~D~  193 (284)
                      ++......++.+|||||||+ |..++.+|+. .+..+|+|||+|+++++.|       +++++..| +. .+++|+++|.
T Consensus       234 ml~~l~l~~g~~VLDLGCGs-G~la~~LA~~-~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~gD~  310 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLKKS  310 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEESSC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEcCc
Confidence            33444667889999999997 5667778872 3445899999999999999       99998888 54 7899999876


Q ss_pred             cccc----ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQVK----EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~~~----~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....    ...+.||+|+++... +. ++..++++++.+.|||||++++..
T Consensus       311 ~~~~~~~~~~~~~FDvIvvn~~l-~~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILVNNFL-FD-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTT-CC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccccccCCCCEEEEeCcc-cc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence            5311    123579999975433 22 566778999999999999999874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.44  E-value=6.3e-13  Score=118.77  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=91.0

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      .....+.-...+.+. ..++.+|||+|||+ |..++.+++   .|.+|+++|+|+.+++.|+++++..| +.  +++.++
T Consensus       103 ~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~-G~l~~~la~---~g~~v~gvDi~~~~v~~a~~n~~~~~-~~--v~~~~~  174 (254)
T 2nxc_A          103 HHETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNG-VR--PRFLEG  174 (254)
T ss_dssp             CSHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTT-CC--CEEEES
T ss_pred             CCHHHHHHHHHHHHh-cCCCCEEEEecCCC-cHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEEC
Confidence            334444444455444 46789999999998 566777887   46699999999999999999999988 43  999999


Q ss_pred             ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.+.. ..+.||+|+.+...    .....+++.+.+.|+|||++++..
T Consensus       175 d~~~~~-~~~~fD~Vv~n~~~----~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          175 SLEAAL-PFGPFDLLVANLYA----ELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             CHHHHG-GGCCEEEEEEECCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhcC-cCCCCCEEEECCcH----HHHHHHHHHHHHHcCCCCEEEEEe
Confidence            997632 23579999976443    556789999999999999999864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.44  E-value=1e-12  Score=116.94  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=90.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..+++ ..++.+|+++|+|+.+++.|++..       .+++|..+|+.+++...+.||+|+
T Consensus        83 ~~~~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~  153 (269)
T 1p91_A           83 DDKATAVLDIGCGE-GYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAII  153 (269)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHH-TCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeEEE
Confidence            35788999999998 556667777 346899999999999999998842       368999999988766556899998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC-----ccccccCccCCCc-----cCCCcEEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK-----GARAFLYPVVEKH-----DLLDFELLSV  265 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~-----glr~~lYp~v~~~-----dl~gfe~~~~  265 (284)
                      .....        ..++++.+.|+|||++++....     .++..+|+.....     ...||++...
T Consensus       154 ~~~~~--------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~  213 (269)
T 1p91_A          154 RIYAP--------CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQS  213 (269)
T ss_dssp             EESCC--------CCHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEEEE
T ss_pred             EeCCh--------hhHHHHHHhcCCCcEEEEEEcCHHHHHHHHHHhhcccccccchhhHhcCCcEEEE
Confidence            53221        2579999999999999987742     2344566654432     1268988654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=1.2e-12  Score=112.45  Aligned_cols=109  Identities=19%  Similarity=0.138  Sum_probs=84.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++...++.+|+++|+|+++++.|++++...| + .+++++++|+.+.....+.||
T Consensus        72 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD  148 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-Y-DNVIVIVGDGTLGYEPLAPYD  148 (215)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEESCGGGCCGGGCCEE
T ss_pred             hhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCCCCCee
Confidence            34567889999999997 56667777743355899999999999999999999988 3 469999999865433345799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +|+.......       +.+.+.+.|+|||++++....+
T Consensus       149 ~v~~~~~~~~-------~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          149 RIYTTAAGPK-------IPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEESSBBSS-------CCHHHHHTEEEEEEEEEEESSS
T ss_pred             EEEECCchHH-------HHHHHHHHcCCCcEEEEEECCC
Confidence            9998765522       1148899999999999877543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.43  E-value=9.8e-14  Score=120.36  Aligned_cols=105  Identities=13%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||. |..|+.++. ..|+++|+++|+|+.|++.|+++++.+| +..+++|  +|..+. ...+.||+|+.
T Consensus        48 ~~~~~VLDlGCG~-GplAl~l~~-~~p~a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~--~d~~~~-~~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGF-NPLALYQWN-ENEKIIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF--LNKESD-VYKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTT-HHHHHHHHC-SSCCCEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE--ECCHHH-HTTSEEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE--eccccc-CCCCCcChhhH
Confidence            5689999999997 555666765 5789999999999999999999999999 5666777  666543 23356999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...++.- ++....+..+.+.|+|||++|--.
T Consensus       122 ~k~LHlL-~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          122 LKMLPVL-KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ETCHHHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhHHHhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            7655333 566667779999999999998755

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.43  E-value=2.5e-14  Score=125.36  Aligned_cols=105  Identities=19%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||+ |..++.+|+   .|.+|+|+|+|+.+++.|+++++..| +..+++|+++|+.+.+. ...||+|++
T Consensus        77 ~~~~~vLD~gcG~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~-~~~~D~v~~  150 (241)
T 3gdh_A           77 FKCDVVVDAFCGV-GGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLLLAS-FLKADVVFL  150 (241)
T ss_dssp             SCCSEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHGG-GCCCSEEEE
T ss_pred             cCCCEEEECcccc-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHHhcc-cCCCCEEEE
Confidence            3789999999997 566677888   57999999999999999999999999 66799999999988763 358999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+. .......+.++.+.|+|||.+++..
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGG-PDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSS-GGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCC-cchhhhHHHHHHhhcCCcceeHHHH
Confidence            764422 2333336678999999999988765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.43  E-value=1.5e-13  Score=113.21  Aligned_cols=102  Identities=10%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD~  205 (284)
                      ++.+|||+|||+ |..++.+++   .+.+|+++|+|+++++.|++++...| +  +++|+++|+.+....    .+.||+
T Consensus        41 ~~~~vLD~GcG~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGS-GAVGLEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-L--GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSS-CHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-C--CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHcC-C--ceEEEeccHHHHHHhhhccCCceEE
Confidence            678999999997 566677887   46679999999999999999999988 4  899999999874321    236999


Q ss_pred             EEecccccCChHHHHHHHHHHH--hhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIR--KYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~--~~l~pGg~lv~r~~  241 (284)
                      |+.+...+   ....++++.+.  +.|+|||.+++...
T Consensus       114 i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          114 AFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            99875332   23345666666  99999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.43  E-value=2.4e-13  Score=118.08  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcC----CCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEecccccc-
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHL----KSTHFDNFDIDEAANDVARQIVSSDIEF----EKRMKFVTCDIMQVK-  197 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~----~g~~V~~iDid~~ai~~Ar~~~~~~G~l----~~~I~f~~~D~~~~~-  197 (284)
                      ...++.+|||||||+ |..+..+++...    ++++|+++|+|+++++.|+++++..| +    ..+++|+++|+.+.. 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC-ccccccCCEEEEECChHhccc
Confidence            357789999999998 566777887433    45799999999999999999999887 3    468999999998754 


Q ss_pred             ---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          198 ---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                         ...+.||+|+......       .+++.+.+.|+|||++++-...
T Consensus       155 ~~~~~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASAS-------ELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBS-------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchH-------HHHHHHHHhcCCCcEEEEEEcc
Confidence               3346799999876652       2468889999999999987753

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.43  E-value=1.2e-13  Score=119.15  Aligned_cols=109  Identities=12%  Similarity=0.105  Sum_probs=79.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHH----HHhcCCCCCCeEEEEeccccccccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQI----VSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~----~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      ...++.+|||||||+ |..+..+|+ ..++++|+|+|+|+++++.+.+.    ....| + .+++|+++|+.+++...+.
T Consensus        24 ~~~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGD-GKHPYKVAR-QNPSRLVVALDADKSRMEKISAKAAAKPAKGG-L-PNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HTTSSEEEEEESCTT-CHHHHHHHH-HCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-C-TTEEEEECCSTTCCSCCCE
T ss_pred             hccCCCEEEEecCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-C-CceEEEecchhhCCCCCCC
Confidence            357889999999997 566677887 47799999999999988864333    33455 2 5899999999987765444


Q ss_pred             ccEEEeccccc-C---ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVG-M---SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~-~---~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       |.|++..... .   ..++..++++++.+.|||||.+++..
T Consensus       100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence             7776322100 0   01223789999999999999999965

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.43  E-value=6.2e-13  Score=124.39  Aligned_cols=107  Identities=16%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|||||||+ |..++.+|+  .+..+|+|+|+|+ +++.|+++++..| +.++++|+++|+.+++.+.+.||+|+.
T Consensus        65 ~~~~~VLDvGcG~-G~~~~~la~--~g~~~v~gvD~s~-~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           65 FKDKVVLDVGSGT-GILCMFAAK--AGARKVIGIECSS-ISDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HTTCEEEEESCTT-SHHHHHHHH--TTCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             CCCCEEEEEeccc-hHHHHHHHH--CCCCEEEEECcHH-HHHHHHHHHHHcC-CCCcEEEEECcHHHccCCCCceEEEEE
Confidence            5789999999998 456777888  2445999999995 9999999999999 788899999999987665578999997


Q ss_pred             ccc--ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AAL--VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~--v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...  ..........++..+.+.|||||+++...
T Consensus       140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            532  11233567789999999999999987543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.43  E-value=2.6e-13  Score=125.76  Aligned_cols=110  Identities=21%  Similarity=0.305  Sum_probs=83.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEeccccccc-cCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEF-EKRMKFVTCDIMQVKE-KLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l-~~~I~f~~~D~~~~~~-~~~~fD  204 (284)
                      ..+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++++...  | + ..+++++++|+.+... ..+.||
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCce
Confidence            5678999999996 667788887 456789999999999999999988754  4 3 4699999999987543 235799


Q ss_pred             EEEecccccCChHHH---HHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEK---VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k---~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|++++.-+......   .++++.+.+.|+|||++++..+
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            999876432211111   6899999999999999999864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.43  E-value=1e-12  Score=114.35  Aligned_cols=104  Identities=12%  Similarity=0.182  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+|||||||++ ..+..+++   .|. +|+++|+|+.+++.|++....     .+++++++|+.+.+...+.||+
T Consensus        40 ~~~~~~~vLdiG~G~G-~~~~~l~~---~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           40 PEVGGLRIVDLGCGFG-WFCRWAHE---HGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             CCCTTCEEEEETCTTC-HHHHHHHH---TTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEE
T ss_pred             cccCCCEEEEEcCcCC-HHHHHHHH---CCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceE
Confidence            3467899999999984 55667777   356 999999999999999985432     4799999999887655568999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+....++. .++..++++++.+.|+|||++++..
T Consensus       111 v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          111 AYSSLALHY-VEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccccc-cchHHHHHHHHHHhcCcCcEEEEEe
Confidence            997654321 1467789999999999999999866

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=1.2e-12  Score=118.39  Aligned_cols=107  Identities=12%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~f  203 (284)
                      .....++.+|||||||+ |..++.||+   .|++|+++|+|+.|++.|++++....   -.+.+...+.. .... .+.|
T Consensus        40 ~l~l~~g~~VLDlGcGt-G~~a~~La~---~g~~V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~-~~~~~~~~f  111 (261)
T 3iv6_A           40 LENIVPGSTVAVIGAST-RFLIEKALE---RGASVTVFDFSQRMCDDLAEALADRC---VTIDLLDITAE-IPKELAGHF  111 (261)
T ss_dssp             TTTCCTTCEEEEECTTC-HHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSC-CCGGGTTCC
T ss_pred             hcCCCCcCEEEEEeCcc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHhcc---ceeeeeecccc-cccccCCCc
Confidence            44567889999999997 677788988   68999999999999999999765432   12223222210 0111 2579


Q ss_pred             cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+.+..+ ++..++..++++.+.+.+ |||++++..
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            999987655 456778889999999999 999999865

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.42  E-value=7.2e-13  Score=115.93  Aligned_cols=147  Identities=10%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCCC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGE  202 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~  202 (284)
                      ....++.+|||+|||+ |..+..+|+...++.+|+++|+|+.+++.+.+++++.    .+++|+++|+.+.   +...+.
T Consensus        73 ~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCC
T ss_pred             ecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCc
Confidence            3457789999999998 5666778874346789999999999999888888765    4799999999873   223457


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcccccc------CccCCCccC--CCcEEEEEe--cCCcce
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFL------YPVVEKHDL--LDFELLSVF--HPTNEV  272 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~l------Yp~v~~~dl--~gfe~~~~~--hP~~~v  272 (284)
                      ||+|+.+..   .......++.++.+.|+|||.+++.....-..+.      |.. +...+  .||++....  .|...-
T Consensus       148 ~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~Gf~~~~~~~~~~~~~~  223 (233)
T 2ipx_A          148 VDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFAS-EVKKMQQENMKPQEQLTLEPYERD  223 (233)
T ss_dssp             EEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHH-HHHTTGGGTEEEEEEEECTTTSSS
T ss_pred             EEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHH-HHHHHHHCCCceEEEEecCCccCC
Confidence            999997543   2344566788999999999999994421100010      110 01122  599988753  344332


Q ss_pred             eeeEEEEeec
Q 036061          273 INSVVLVRKP  282 (284)
Q Consensus       273 ~nsvi~~r~~  282 (284)
                       ..+|+++++
T Consensus       224 -~~~v~~~~~  232 (233)
T 2ipx_A          224 -HAVVVGVYR  232 (233)
T ss_dssp             -EEEEEEEEC
T ss_pred             -cEEEEEEeC
Confidence             346677664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.42  E-value=1.1e-12  Score=121.07  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+.+++.+++++++.| + .+++++++|+.+++...+.||+|
T Consensus       115 ~~~~g~~VLDlg~G~G~~t-~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~I  191 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-V-LNVILFHSSSLHIGELNVEFDKI  191 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-C-CSEEEESSCGGGGGGGCCCEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-C-CeEEEEECChhhcccccccCCEE
Confidence            5678899999999997665 5566633456899999999999999999999999 4 47999999998876544579999


Q ss_pred             Eeccc---ccC---Ch---------------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAAL---VGM---SK---------------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~---v~~---~~---------------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++.   .|.   .+               ....++++++.+.|||||++++.+
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            98642   111   11               112689999999999999999965

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.42  E-value=6.6e-13  Score=125.72  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC--CeEEEEeccccccccCCC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK--RMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~--~I~f~~~D~~~~~~~~~~  202 (284)
                      .....++.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++...| +.+  +++|+++|+.+. ...+.
T Consensus       217 ~l~~~~~~~VLDlGcG~-G~~s~~la~-~~p~~~V~gvD~s~~al~~Ar~n~~~ng-l~~~~~v~~~~~D~~~~-~~~~~  292 (375)
T 4dcm_A          217 HLPENLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSG-VEPFR  292 (375)
T ss_dssp             TCCCSCCSEEEEETCTT-CHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGGGEEEEECSTTTT-CCTTC
T ss_pred             hCcccCCCeEEEEeCcc-hHHHHHHHH-HCCCCEEEEEECcHHHHHHHHHHHHHcC-CCcCceEEEEechhhcc-CCCCC
Confidence            33445668999999997 555677777 4679999999999999999999999988 553  588999999873 23357


Q ss_pred             ccEEEeccccc----CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVG----MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~----~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+++...+    .......++++++.+.|+|||.+++..
T Consensus       293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            99999875432    122344579999999999999998854

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.42  E-value=4.5e-13  Score=120.62  Aligned_cols=105  Identities=17%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ...++.+|||+|||++ ..++.+++...++.+|+++|+|+++++.|+++++.. |.  ++++|+++|+.+ ....+.||+
T Consensus       107 ~~~~~~~VLD~G~G~G-~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~-~~~~~~fD~  182 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSG-NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--GNVRTSRSDIAD-FISDQMYDA  182 (275)
T ss_dssp             CCCTTCEEEEECCTTS-HHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--TTEEEECSCTTT-CCCSCCEEE
T ss_pred             CCCCcCEEEEecCCCC-HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC--CcEEEEECchhc-cCcCCCccE
Confidence            4578899999999975 555677773357899999999999999999999988 73  689999999987 333357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++.      ++..++++++.+.|+|||++++...
T Consensus       183 Vi~~~------~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          183 VIADI------PDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EEECC------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             EEEcC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99732      3446799999999999999999774

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=6.3e-13  Score=119.19  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   ++++|+|+|+|+.+++.|++..       .+++|+++|+.+++. .+.||+|
T Consensus        54 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v  121 (279)
T 3ccf_A           54 NPQPGEFILDLGCGT-GQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLDAV  121 (279)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEEEE
T ss_pred             CCCCCCEEEEecCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcCEE
Confidence            456789999999997 566677877   8899999999999999999853       368999999988765 3579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....++. ..+..++++++.+.|+|||.+++...
T Consensus       122 ~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          122 FSNAMLHW-VKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhh-CcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            97654422 14567899999999999999998663

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.42  E-value=7.5e-13  Score=116.59  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEeccccccccCCCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      .....++.+|||+|||+ |..++.+++...++.+|+++|+|+++++.|+++++.. |  .++++++++|+.+.+...+.|
T Consensus        91 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~~~~~~~~~  167 (258)
T 2pwy_A           91 LLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEEAELEEAAY  167 (258)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGGCCCCTTCE
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhhcCCCCCCc
Confidence            34567889999999997 5666778874356899999999999999999999887 7  368999999998764444579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.      ++..++++++.+.|+|||.+++-..
T Consensus       168 D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          168 DGVALDL------MEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             EEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            9999742      2345789999999999999999774

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.42  E-value=1.2e-12  Score=117.65  Aligned_cols=108  Identities=16%  Similarity=0.229  Sum_probs=86.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..++.+++ ..++++|+++|+|+++++.|+++++..| +. +++|+++|+.+... .+.||+|+.
T Consensus       108 ~~~~~vLDlG~GsG-~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~~-~v~~~~~d~~~~~~-~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGTG-AIALALAS-ERPDCEIIAVDRMPDAVSLAQRNAQHLA-IK-NIHILQSDWFSALA-GQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTTS-HHHHHHHH-HCTTSEEEEECSSHHHHHHHHHHHHHHT-CC-SEEEECCSTTGGGT-TCCEEEEEE
T ss_pred             cCCCEEEEecCCcc-HHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEEcchhhhcc-cCCccEEEE
Confidence            56789999999984 55677776 3678999999999999999999999998 44 79999999987432 357999997


Q ss_pred             cc-cccCC-----------------------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AA-LVGMS-----------------------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa-~v~~~-----------------------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +. +++..                       .....++++++.+.|+|||.+++..+
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            63 22110                       03567899999999999999999753

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.42  E-value=1.3e-12  Score=120.15  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..++.+|+....+.+|+++|+|+++++.|+++++..| +. +++|+++|+.+.+...+.||
T Consensus        70 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~~-~v~~~~~d~~~~~~~~~~fD  146 (317)
T 1dl5_A           70 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IE-NVIFVCGDGYYGVPEFSPYD  146 (317)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CeEEEECChhhccccCCCeE
Confidence            34567889999999998 55667788732235789999999999999999999999 44 59999999987554456899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+.......-       .+.+.+.|||||++++...
T Consensus       147 ~Iv~~~~~~~~-------~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          147 VIFVTVGVDEV-------PETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             EEEECSBBSCC-------CHHHHHHEEEEEEEEEEBC
T ss_pred             EEEEcCCHHHH-------HHHHHHhcCCCcEEEEEEC
Confidence            99987655211       1578889999999999753

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.41  E-value=1.8e-12  Score=118.32  Aligned_cols=110  Identities=14%  Similarity=0.074  Sum_probs=84.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-----CCCCeEEEEecccccc----c-
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-----FEKRMKFVTCDIMQVK----E-  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-----l~~~I~f~~~D~~~~~----~-  198 (284)
                      .++.+|||||||++..+ ..+++  .++.+|+++|+|+++++.|++.....+.     ...+++|+++|+.+.+    . 
T Consensus        33 ~~~~~VLDlGcG~G~~~-~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~  109 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDL-LKWKK--GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR  109 (313)
T ss_dssp             --CCEEEEETCTTTTTH-HHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS
T ss_pred             CCCCEEEEECCCCcHHH-HHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc
Confidence            47889999999986554 55655  3688999999999999999998876420     1247999999998764    2 


Q ss_pred             -cCCCccEEEecccccC---ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 -KLGEYDCIFLAALVGM---SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~---~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                       ..+.||+|+....+++   +.++...+++++.+.|+|||.+++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence             1247999997654432   446678999999999999999999774

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.41  E-value=5e-13  Score=121.46  Aligned_cols=108  Identities=15%  Similarity=0.229  Sum_probs=84.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC--------CCCeEEEEeccccccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEF--------EKRMKFVTCDIMQVKE  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l--------~~~I~f~~~D~~~~~~  198 (284)
                      ..+++||+||||+ |..+..+++ + +..+|+++|+|+++++.|++++ +.  | +        ..+++++++|+.+...
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~-~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-C-CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhc
Confidence            5678999999997 667778887 3 6789999999999999999988 54  3 2        4689999999976543


Q ss_pred             cCCCccEEEecccccCCh-HH--HHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGMSK-EE--KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~-~~--k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..+.||+|+++..-+... ..  ..++++.+.+.|+|||++++...
T Consensus       149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            345799999876532211 11  26799999999999999999753

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.41  E-value=9.4e-13  Score=114.43  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--cc-CCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EK-LGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~-~~~f  203 (284)
                      ...++.+|||+|||+ |..++.+|+...++.+|+++|+|+++++.++++++..    .+++|+++|+.+..  .. .+.|
T Consensus        70 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~  144 (227)
T 1g8a_A           70 PIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCCc
Confidence            357889999999997 5667778874345689999999999999999988764    48999999998732  11 2469


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+.+...   ......+++++.+.|+|||.+++..
T Consensus       145 D~v~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVAQ---PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCC---HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999976442   2334455999999999999998864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.41  E-value=1.5e-12  Score=118.60  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc---cEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY---DCI  206 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f---D~V  206 (284)
                      ++.+|||+|||+ |.-++.+|+ . ++++|+++|+|+++++.|+++++..| +.++++|+++|+.+...  +.|   |+|
T Consensus       123 ~~~~vLDlG~Gs-G~~~~~la~-~-~~~~v~~vDis~~al~~A~~n~~~~~-l~~~v~~~~~D~~~~~~--~~f~~~D~I  196 (284)
T 1nv8_A          123 GIKTVADIGTGS-GAIGVSVAK-F-SDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFK--EKFASIEMI  196 (284)
T ss_dssp             TCCEEEEESCTT-SHHHHHHHH-H-SSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGG--GGTTTCCEE
T ss_pred             CCCEEEEEeCch-hHHHHHHHH-C-CCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcchhhcc--cccCCCCEE
Confidence            567999999997 566788888 3 89999999999999999999999999 67789999999987432  468   999


Q ss_pred             Eecc-cccCC--------hHH---------HHHHHHHHH-hhcCCCcEEEEEecC
Q 036061          207 FLAA-LVGMS--------KEE---------KVKIIKHIR-KYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa-~v~~~--------~~~---------k~~il~~l~-~~l~pGg~lv~r~~~  242 (284)
                      +.+. +++..        -++         ...+++++. +.++|||.+++..++
T Consensus       197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            9863 22110        011         237899999 999999999997653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.41  E-value=9.1e-13  Score=117.90  Aligned_cols=110  Identities=18%  Similarity=0.246  Sum_probs=88.6

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEeccccccccCCCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      .....++.+|||+|||+ |..+..+++...++.+|+++|+|+++++.|+++++.. |.+.++++++++|+.+.+...+.|
T Consensus        94 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~  172 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV  172 (280)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred             HcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCce
Confidence            34567889999999997 4556677774456899999999999999999999887 523578999999998865445679


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++..      +..++++++.+.|+|||.+++-..
T Consensus       173 D~v~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          173 DRAVLDML------APWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEEEESS------CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             eEEEECCc------CHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99997422      334789999999999999999774

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.41  E-value=7e-13  Score=119.22  Aligned_cols=107  Identities=17%  Similarity=0.165  Sum_probs=88.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||+|||+ |..++.+++...++.+|+++|+|+++++.|+++++..| +.++++++++|+.+.. ..+.||+
T Consensus       108 ~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-~~~~~D~  184 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEGF-DEKDVDA  184 (277)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGCC-SCCSEEE
T ss_pred             hCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHcc-cCCccCE
Confidence            3567889999999998 55667777744568999999999999999999999988 6678999999998752 2357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++.      ++..++++++.+.|+|||.+++...
T Consensus       185 V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          185 LFLDV------PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             EEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99752      2345789999999999999999775

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.41  E-value=9.1e-13  Score=119.01  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~  201 (284)
                      .+.++.+|||+|||+++.|. .+|+ ..++ .+|+++|+|+.+++.+++++++.| +. +++++++|+.+++..    .+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTT-HLAQ-LMKNKGTIVAVEISKTRTKALKSNINRMG-VL-NTIIINADMRKYKDYLLKNEI  155 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHH-HHHH-HTTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCCcCEEEEeCCCccHHHH-HHHH-HcCCCCEEEEECCCHHHHHHHHHHHHHhC-CC-cEEEEeCChHhcchhhhhccc
Confidence            45788999999999977664 4555 2445 899999999999999999999999 44 899999999876542    45


Q ss_pred             CccEEEecccc---cC-------C-------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV---GM-------S-------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v---~~-------~-------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|++++-.   |.       .       .....++++++.+.|||||++++.+
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            79999987421   11       0       0234789999999999999999976

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.41  E-value=1.3e-12  Score=111.86  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061          117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      +.+...+.+.. .++.+|||||||++.++ ..+      +. +|+++|+|+++++.|++..       .+++++++|+.+
T Consensus        24 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~-~~l------~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~   88 (211)
T 2gs9_A           24 AEEERALKGLL-PPGESLLEVGAGTGYWL-RRL------PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEA   88 (211)
T ss_dssp             HHHHHHHHTTC-CCCSEEEEETCTTCHHH-HHC------CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTS
T ss_pred             HHHHHHHHHhc-CCCCeEEEECCCCCHhH-HhC------CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEccccc
Confidence            33445565554 48899999999985433 222      56 9999999999999999865       368999999988


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++...+.||+|+....+.. .++..++++++.+.|||||.+++...
T Consensus        89 ~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           89 LPFPGESFDVVLLFTTLEF-VEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             CCSCSSCEEEEEEESCTTT-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCcEEEEEEcChhhh-cCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            7665568999997654422 24667899999999999999999764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.41  E-value=4.4e-13  Score=118.04  Aligned_cols=105  Identities=14%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC-hHHHHHH---HHHHHhcCCCCCCeEEEEeccccccccC-CC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID-EAANDVA---RQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid-~~ai~~A---r~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~  202 (284)
                      ..++.+|||||||+ |..++.+|+ ..++++|+|||+| +.+++.|   ++.+.+.|.  .+++|+++|+.+++... ..
T Consensus        22 ~~~~~~vLDiGCG~-G~~~~~la~-~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~~~d~~~l~~~~~d~   97 (225)
T 3p2e_A           22 GQFDRVHIDLGTGD-GRNIYKLAI-NDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFVIAAAESLPFELKNI   97 (225)
T ss_dssp             TTCSEEEEEETCTT-SHHHHHHHH-TCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEECCBTTBCCGGGTTC
T ss_pred             CCCCCEEEEEeccC-cHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEcCHHHhhhhccCe
Confidence            36788999999997 566777885 3689999999999 5555555   888888883  57999999998875422 23


Q ss_pred             ccEEEecccccCCh------HHHHHHHHHHHhhcCCCcEEEE
Q 036061          203 YDCIFLAALVGMSK------EEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       203 fD~V~~aa~v~~~~------~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +|.|++...  ++.      .+..++++++++.|||||++++
T Consensus        98 v~~i~~~~~--~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           98 ADSISILFP--WGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEEESC--CHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEEeCC--CcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            555543321  111      1124689999999999999998

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.40  E-value=2e-12  Score=113.11  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||+|||+ |..++.+++.   +.+|+++|+|+++++.|+++++..| +..+++++++|+.+.....+.||
T Consensus        86 ~~~~~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           86 KLNLNKEKRVLEFGTGS-GALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTTSCCCTTCBS
T ss_pred             hcCCCCCCEEEEeCCCc-cHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhhcccCCCccc
Confidence            33557889999999996 6677788882   8899999999999999999999988 67899999999987542335799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+.+.      ++..++++++.+.|+|||++++...
T Consensus       161 ~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          161 AAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             EEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999742      2345789999999999999999775

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.40  E-value=1.4e-12  Score=114.22  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc----ccccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ----VKEKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~----~~~~~~~  202 (284)
                      ...++.+|||||||+ |..+..+|+. .+..+|+++|+|+++++.|+++++..    .+++++++|+.+    .+.. ..
T Consensus        71 ~~~~~~~VLDlGcG~-G~~~~~la~~-~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-~~  143 (230)
T 1fbn_A           71 PIKRDSKILYLGASA-GTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIV-EK  143 (230)
T ss_dssp             CCCTTCEEEEESCCS-SHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-CC
T ss_pred             CCCCCCEEEEEcccC-CHHHHHHHHH-cCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-cc
Confidence            456789999999998 6677788873 34589999999999999999987654    589999999987    4433 57


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||+|+..  + ........+++++.+.|+|||.+++.
T Consensus       144 ~D~v~~~--~-~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYED--V-AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEEC--C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEe--c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999943  2 12244577899999999999999885

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=5.4e-13  Score=118.83  Aligned_cols=100  Identities=10%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..+..+++   ++++|+|+|+|+.+++.|++..        +++|+++|+.+++...+.||+|
T Consensus        31 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           31 NLPKGSVIADIGAGT-GGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCSCTTCBSEE
T ss_pred             CCCCCCEEEEEcCcc-cHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCCCCCCEeEE
Confidence            457889999999997 566778887   8899999999999988776522        7999999998877666789999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....++. .++..++++++.+.|| ||.+++-+
T Consensus        99 ~~~~~l~~-~~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A           99 ISILAIHH-FSHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             EEESCGGG-CSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             EEcchHhh-ccCHHHHHHHHHHHhC-CcEEEEEE
Confidence            97764422 2667889999999999 99776655

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.40  E-value=1.4e-12  Score=115.32  Aligned_cols=108  Identities=13%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--------CCCCCCeEEEEecccc-cc--
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--------IEFEKRMKFVTCDIMQ-VK--  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--------G~l~~~I~f~~~D~~~-~~--  197 (284)
                      .++.+|||||||++ ..++.+|+ ..++++|+|+|+|+.+++.|+++++..        | + .+++|+++|+.+ ++  
T Consensus        48 ~~~~~vLDiGcG~G-~~~~~la~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFG-GLMIDLSP-AFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-F-QNINVLRGNAMKFLPNF  123 (246)
T ss_dssp             SCCEEEEEETCTTS-HHHHHHHH-HSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-T-TTEEEEECCTTSCGGGT
T ss_pred             CCCCEEEEEcCCCC-HHHHHHHH-hCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-C-CcEEEEeccHHHHHHHh
Confidence            56789999999975 45566777 457889999999999999999999876        6 3 579999999987 33  


Q ss_pred             ccCCCccEEEecccccCChHH-------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEE-------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~-------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+.||.|++...-.+.+..       ..++++.+.+.|+|||.|++.+
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            234579988754211111000       0479999999999999999965

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.40  E-value=1.5e-12  Score=121.54  Aligned_cols=107  Identities=19%  Similarity=0.209  Sum_probs=85.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++++|||||||++. -++.+|+  .+..+|+++|+|+ +++.|+++++..| +.++++++++|+.+++.+ +.||+|
T Consensus        47 ~~~~~~~VLDiGcGtG~-ls~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~-l~~~v~~~~~d~~~~~~~-~~~D~I  120 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGI-LSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-EQVDII  120 (348)
T ss_dssp             GGTTTCEEEEETCTTSH-HHHHHHH--TTCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEcCCCccH-HHHHHHh--CCCCEEEEECCHH-HHHHHHHHHHHcC-CCCcEEEEEcchhhCCCC-CceeEE
Confidence            34678999999999854 5677777  2446999999996 8899999999999 788999999999876543 579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +..... ++..+...+.+.++.+.|+|||++++.
T Consensus       121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            976432 333455667888999999999999854

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.40  E-value=1.2e-12  Score=121.92  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=86.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEecccccccc----CCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDIMQVKEK----LGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~~~~~~~----~~~f  203 (284)
                      .++.+|||+|||+++ .++.+|+   .|++|+++|+|+.+++.|+++++..| +.+ +++|+++|+.+....    ...|
T Consensus       152 ~~~~~VLDlgcGtG~-~sl~la~---~ga~V~~VD~s~~al~~a~~n~~~~g-l~~~~v~~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTGV-ASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTCH-HHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             CCCCcEEEcccccCH-HHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECcHHHHHHHHHhcCCCc
Confidence            467899999999854 5677777   57799999999999999999999999 565 599999999886542    3579


Q ss_pred             cEEEeccc-ccCC--------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAAL-VGMS--------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~-v~~~--------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.- .+..        ..+..++++.+.+.|+|||.+++...
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            99998642 1111        24567899999999999999777653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.40  E-value=1.3e-12  Score=124.12  Aligned_cols=131  Identities=11%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||+ |..++.+++   .+++|+++|+|+.+++.|++++...|.   +++|+++|+.+.....+.||+|++
T Consensus       232 ~~~~~VLDlGcG~-G~~~~~la~---~g~~V~gvDis~~al~~A~~n~~~~~~---~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          232 VRGRQVLDLGAGY-GALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEANAL---KAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTTCEEEEETCTT-STTHHHHHH---TTCEEEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCCEEEEEeeeC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEcchhhccccCCCeEEEEE
Confidence            4678999999997 566677888   478999999999999999999999884   499999999887665568999998


Q ss_pred             ccccc----CChHHHHHHHHHHHhhcCCCcEEEEEecCcc--ccc---cCccCCCccCCCcEEEEEe
Q 036061          209 AALVG----MSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA--RAF---LYPVVEKHDLLDFELLSVF  266 (284)
Q Consensus       209 aa~v~----~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl--r~~---lYp~v~~~dl~gfe~~~~~  266 (284)
                      +...+    ...+...++++++.+.|+|||.+++.....+  ...   .|..+..-.-.||+++...
T Consensus       305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l~~~gF~Vl~a~  371 (381)
T 3dmg_A          305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTLKVAEYKVLFAE  371 (381)
T ss_dssp             CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEEEESSSEEEEEE
T ss_pred             CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEEeCCCEEEEEEE
Confidence            75332    2246778999999999999999998753221  111   1122221122688887664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.39  E-value=5.3e-13  Score=118.15  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=83.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhc---CCCCCC-------------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSD---IEFEKR-------------------  185 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~---G~l~~~-------------------  185 (284)
                      .++.+|||+|||+ |..++.+++.. .++.+|+|+|+|+.+++.|++++...   | +..+                   
T Consensus        50 ~~~~~vLD~gcGs-G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           50 DGPVTLWDPCCGS-GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG-LTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             CSCEEEEETTCTT-SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCeEEECCCCC-CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc-ccccchhhhhhhhhcccccchhh
Confidence            4678999999997 55667777721 35789999999999999999998876   5 3333                   


Q ss_pred             ------eE-------------EEEeccccccc-----cCCCccEEEecc-cccCC-------hHHHHHHHHHHHhhcCCC
Q 036061          186 ------MK-------------FVTCDIMQVKE-----KLGEYDCIFLAA-LVGMS-------KEEKVKIIKHIRKYMKDG  233 (284)
Q Consensus       186 ------I~-------------f~~~D~~~~~~-----~~~~fD~V~~aa-~v~~~-------~~~k~~il~~l~~~l~pG  233 (284)
                            ++             |+++|+.+...     ....||+|+.+. ++...       .+....+++++.+.|+||
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                  77             99999987442     223799999764 22211       366779999999999999


Q ss_pred             cEEEEE
Q 036061          234 GVLLVR  239 (284)
Q Consensus       234 g~lv~r  239 (284)
                      |++++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999983

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.39  E-value=8.6e-13  Score=115.06  Aligned_cols=91  Identities=10%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-ccccc-CCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-QVKEK-LGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-~~~~~-~~~fD~V  206 (284)
                      .++.+|||||||+ |..+..+++   .+++|+++|+|+.+++.|+++    .   .+++|+++|+. .++.. .+.||+|
T Consensus        47 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGH-GPDAARFGP---QAARWAAYDFSPELLKLARAN----A---PHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHH----C---TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHh----C---CCceEEEcchhhccCCcCCCCEEEE
Confidence            6789999999997 567788888   388999999999999999997    2   37999999994 44444 4579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +...       +..++++++.+.|||||.++
T Consensus       116 ~~~~-------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSRR-------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEES-------CCSGGGGGHHHHEEEEEEEE
T ss_pred             EeCC-------CHHHHHHHHHHHcCCCcEEE
Confidence            8762       34578899999999999998

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.39  E-value=1e-12  Score=121.98  Aligned_cols=111  Identities=21%  Similarity=0.264  Sum_probs=85.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEeccccccc-cCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEF-EKRMKFVTCDIMQVKE-KLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l-~~~I~f~~~D~~~~~~-~~~~fD  204 (284)
                      ..+++||+||||+ |..+..+++ +.++.+|+++|+|+++++.|++++...  + + ..+++++++|+.+... ..+.||
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDis~~~l~~ar~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEEccHHHHHhhcCCCce
Confidence            5678999999997 566777777 456799999999999999999988762  3 2 4689999999987532 235799


Q ss_pred             EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEecC
Q 036061          205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +|+++..-......   ..++++.+.+.|+|||++++....
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99987632211111   168999999999999999997643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.38  E-value=1.1e-12  Score=120.86  Aligned_cols=110  Identities=19%  Similarity=0.260  Sum_probs=84.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCC-CCCeEEEEecccccccc-CCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS--DIEF-EKRMKFVTCDIMQVKEK-LGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~G~l-~~~I~f~~~D~~~~~~~-~~~f  203 (284)
                      ...+++||+||||+ |..+..+++ +.+..+|+++|+|+++++.|++++..  .| + ..+++++++|+.+.... .+.|
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHhhCCCCc
Confidence            35779999999997 667788887 45678999999999999999999865  34 3 46899999999875332 3579


Q ss_pred             cEEEecccccCCh---HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSK---EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~---~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+||++..-....   ....++++.+.+.|+|||++++..
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            9999876432111   123578999999999999999976

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.38  E-value=3.3e-12  Score=118.77  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=83.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +..+...++.+|||||||+ |..+..+++ ..++.+++++|+ +.++.  ++.++..| +.++|+|+.+|..+ +.+  .
T Consensus       177 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~--~~~~~~~~-~~~~v~~~~~d~~~-~~p--~  247 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGR-GGFLLTVLR-EHPGLQGVLLDR-AEVVA--RHRLDAPD-VAGRWKVVEGDFLR-EVP--H  247 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTT-SHHHHHHHH-HCTTEEEEEEEC-HHHHT--TCCCCCGG-GTTSEEEEECCTTT-CCC--C
T ss_pred             HHhCCccCCceEEEECCcc-CHHHHHHHH-HCCCCEEEEecC-HHHhh--cccccccC-CCCCeEEEecCCCC-CCC--C
Confidence            3344457789999999998 555666776 478999999999 45555  44444456 57899999999963 222  8


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|++...+ .++.++..++++++++.|||||+|++.+
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999977654 5676777899999999999999998866

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.38  E-value=1.9e-12  Score=117.81  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=86.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEecccccccc-CCCcc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F-EKRMKFVTCDIMQVKEK-LGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l-~~~I~f~~~D~~~~~~~-~~~fD  204 (284)
                      ..++++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++.+...+. + ..+++++++|+.+.... .+.||
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence            35779999999997 556677776 45678999999999999999998765420 1 36899999999875432 35799


Q ss_pred             EEEecccccCChHHH---HHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEK---VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k---~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++..-+......   .++++.+.+.|+|||++++...
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            999876432222222   6899999999999999999854

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.38  E-value=1.5e-12  Score=119.57  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEecccccccc--CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEK--LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~--~~~fD  204 (284)
                      .++++||+||||. |..+..+++ +.+..+|+++|+|+.+++.|++.+...  +....+++++++|+.+.+..  .+.||
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLR-HGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            5779999999997 566677777 456789999999999999999987421  11246899999999886653  45799


Q ss_pred             EEEecccccCChHHH---HHHHHHHHhhcCCCcEEEEEecC
Q 036061          205 CIFLAALVGMSKEEK---VKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k---~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +|+++..........   .++++.+.+.|+|||++++....
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            999876432111111   58999999999999999997643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.37  E-value=1.4e-12  Score=113.38  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=80.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.+...|    +++++++|+.+.....+.||
T Consensus        65 ~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           65 ELDLHKGQKVLEIGTGI-GYYTALIAE---IVDKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCCCEEEEEcCCC-CHHHHHHHH---HcCEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccccccCCCcc
Confidence            33567889999999998 566677777   34899999999999999999887765    79999999987333345799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+.......       +.+.+.+.|+|||++++...
T Consensus       137 ~v~~~~~~~~-------~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          137 RVVVWATAPT-------LLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEESSBBSS-------CCHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCcHHH-------HHHHHHHHcCCCcEEEEEEc
Confidence            9998765521       12468899999999998764

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.37  E-value=1.6e-12  Score=119.18  Aligned_cols=111  Identities=21%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCC-CCCeEEEEecccccccc-CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS--DIEF-EKRMKFVTCDIMQVKEK-LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~G~l-~~~I~f~~~D~~~~~~~-~~~fD  204 (284)
                      ..+.+||+||||+ |..+..+++ +.++.+|+++|+|+.+++.|++++..  .+ + ..+++++++|+.+.... .+.||
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCce
Confidence            4678999999997 556677777 34678999999999999999998864  23 2 36899999999875432 35799


Q ss_pred             EEEeccccc-CChH---HHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          205 CIFLAALVG-MSKE---EKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v~-~~~~---~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +|+++..-+ ....   ...++++.+.+.|+|||++++....
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999865321 1001   1268999999999999999998643

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.36  E-value=2.7e-12  Score=118.94  Aligned_cols=105  Identities=18%  Similarity=0.272  Sum_probs=84.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|||||||++ ..++.+|+  ....+|+++|+| .+++.|+++++..| +.++|+++++|+.+++.+.+.||+|+.
T Consensus        37 ~~~~~VLDiGcGtG-~ls~~la~--~g~~~v~~vD~s-~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           37 FKDKIVLDVGCGTG-ILSMFAAK--HGAKHVIGVDMS-SIIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HTTCEEEEETCTTS-HHHHHHHH--TCCSEEEEEESS-THHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             cCCCEEEEecCccH-HHHHHHHH--CCCCEEEEEChH-HHHHHHHHHHHHcC-CCCCEEEEECchhhccCCCCcccEEEE
Confidence            56789999999985 55677877  233599999999 59999999999999 788999999999887655567999997


Q ss_pred             cccc--cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALV--GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v--~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ....  .........++..+.+.|+|||.++.
T Consensus       112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            5321  11334566899999999999999973

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.36  E-value=6.5e-12  Score=113.79  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=77.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeC-ChHHHHHHHHHH-----HhcCCCC----CCeEEEEecccccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDI-DEAANDVARQIV-----SSDIEFE----KRMKFVTCDIMQVK  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDi-d~~ai~~Ar~~~-----~~~G~l~----~~I~f~~~D~~~~~  197 (284)
                      .++++|||||||+ |..++.+|+   .|+ +|+++|+ |+++++.|++++     +..| +.    ++++++..|..+..
T Consensus        78 ~~~~~vLDlG~G~-G~~~~~~a~---~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~-~~~~~~~~v~~~~~~~~~~~  152 (281)
T 3bzb_A           78 IAGKTVCELGAGA-GLVSIVAFL---AGADQVVATDYPDPEILNSLESNIREHTANSCS-SETVKRASPKVVPYRWGDSP  152 (281)
T ss_dssp             TTTCEEEETTCTT-SHHHHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCT
T ss_pred             cCCCeEEEecccc-cHHHHHHHH---cCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc-cccCCCCCeEEEEecCCCcc
Confidence            5778999999997 566788888   355 9999999 899999999999     6666 44    57999876654321


Q ss_pred             c------cCCCccEEEecccccCChHHHHHHHHHHHhhcC---C--CcEEEEEe
Q 036061          198 E------KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMK---D--GGVLLVRS  240 (284)
Q Consensus       198 ~------~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~---p--Gg~lv~r~  240 (284)
                      .      ..+.||+|+.+..+ ...++...+++.+.+.|+   |  ||++++-.
T Consensus       153 ~~~~~~~~~~~fD~Ii~~dvl-~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          153 DSLQRCTGLQRFQVVLLADLL-SFHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHHHHHSCSSBSEEEEESCC-SCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             HHHHhhccCCCCCEEEEeCcc-cChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            1      13579999864433 335678899999999999   9  99876643

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.36  E-value=1.4e-12  Score=118.22  Aligned_cols=112  Identities=20%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEecccccccc-CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEK-LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~-~~~fD~  205 (284)
                      ..+++||+||||. |..+..+++ +.+..+|+++|+|+++++.|++++...  +.-..+++++++|+.+.... .+.||+
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHh-CCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeE
Confidence            4679999999996 566777777 345689999999999999999988642  31146899999999875432 357999


Q ss_pred             EEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          206 IFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       206 V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      |+++..-+....   -..++++.+.+.|+|||++++....
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            998764321111   1257999999999999999998643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.36  E-value=1.6e-12  Score=120.10  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=85.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEeccccccc-cCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEF-EKRMKFVTCDIMQVKE-KLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l-~~~I~f~~~D~~~~~~-~~~~fD  204 (284)
                      ..+++||+||||+ |..+..+++ +.++.+|+++|+|+++++.|++.+...  |.+ ..+++++++|+.+... ..+.||
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            5678999999997 566777877 456789999999999999999988652  201 3689999999987532 335799


Q ss_pred             EEEecccccC---ChHH---HHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGM---SKEE---KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~---~~~~---k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++...+.   ....   ..++++.+.+.|+|||++++...
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9998765422   1111   46899999999999999999753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=2.2e-12  Score=116.50  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||+++ -++.+|+ ..++++|+++|+|+++++.|+++++..| + ++++|+++|+.+. ...+.||+|+
T Consensus       117 ~~~~~~VLDlgcG~G~-~s~~la~-~~~~~~V~~vD~s~~av~~a~~n~~~n~-l-~~~~~~~~d~~~~-~~~~~~D~Vi  191 (272)
T 3a27_A          117 SNENEVVVDMFAGIGY-FTIPLAK-YSKPKLVYAIEKNPTAYHYLCENIKLNK-L-NNVIPILADNRDV-ELKDVADRVI  191 (272)
T ss_dssp             CCTTCEEEETTCTTTT-THHHHHH-HTCCSEEEEEECCHHHHHHHHHHHHHTT-C-SSEEEEESCGGGC-CCTTCEEEEE
T ss_pred             cCCCCEEEEecCcCCH-HHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCEEEEECChHHc-CccCCceEEE
Confidence            5788999999999855 4567777 3456799999999999999999999998 4 4689999999887 3345799999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++..-     ...+++..+.+.|+|||++++..
T Consensus       192 ~d~p~-----~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          192 MGYVH-----KTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             ECCCS-----SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCcc-----cHHHHHHHHHHHcCCCCEEEEEE
Confidence            87542     34568899999999999998765

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.35  E-value=4.8e-12  Score=129.73  Aligned_cols=109  Identities=11%  Similarity=0.121  Sum_probs=88.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CCCCCCeEEEEeccccccccCCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD------IEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      .++.+|||||||+ |..++.||+...+..+|+|||+|+.+++.|++.++..      |.  .+++|+++|+.+++...+.
T Consensus       720 ~~g~rVLDVGCGT-G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl--~nVefiqGDa~dLp~~d~s  796 (950)
T 3htx_A          720 SSASTLVDFGCGS-GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV--KSATLYDGSILEFDSRLHD  796 (950)
T ss_dssp             SCCSEEEEETCSS-SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC--SEEEEEESCTTSCCTTSCS
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC--CceEEEECchHhCCcccCC
Confidence            4789999999997 5667788872124489999999999999999977643      42  4899999999998877778


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|+....+ +++.+....+++.+.+.|+|| .+++.+.
T Consensus       797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9999976555 566677778999999999999 7777664

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.35  E-value=4.3e-12  Score=115.52  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=85.6

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcC--C-CcEEEEEeCChHHHHHHHHHHHh-----------------------cC
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHL--K-STHFDNFDIDEAANDVARQIVSS-----------------------DI  180 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~--~-g~~V~~iDid~~ai~~Ar~~~~~-----------------------~G  180 (284)
                      ++.+|+++|||++-.   -|+.|++...  + +++|+|+|+|++|++.|++.+-.                       .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            467999999998531   3566766212  1 57999999999999999986410                       00


Q ss_pred             ------CCCCCeEEEEecccccccc-CCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          181 ------EFEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       181 ------~l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                            .+.++|+|.++|+.+.+.+ .+.||+|+... ++..+.+.+.++++.+++.|+|||.|++.....+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~~  256 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF  256 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecccc
Confidence                  0114799999999874333 35799999754 3356778889999999999999999999765543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.35  E-value=3.1e-12  Score=124.88  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ .-++.+|+  .+..+|+++|+|+ +++.|+++++..| +.++|+|+.+|+.++..+ +.||+|+
T Consensus       156 ~~~~~~VLDiGcGtG-~la~~la~--~~~~~V~gvD~s~-~l~~A~~~~~~~g-l~~~v~~~~~d~~~~~~~-~~fD~Iv  229 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSG-ILSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-EQVDIII  229 (480)
T ss_dssp             GTTTCEEEEESCSTT-HHHHHHHH--TTCSEEEEEECHH-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             hcCCCEEEEecCccc-HHHHHHHH--cCCCEEEEEEcHH-HHHHHHHHHHHcC-CCCcEEEEECchhhCccC-CCeEEEE
Confidence            457889999999985 55677777  3567999999998 9999999999999 788999999999875432 4799999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ..... .+..+...+.+.++.+.|+|||.+++.
T Consensus       230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            76432 223355667888999999999999853

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.35  E-value=2.3e-12  Score=112.98  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||+ |..+..+++. .+ .+|+++|+|+++++.|++++...| + .+++|+++|+.....+.+.||+
T Consensus        87 l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~  161 (235)
T 1jg1_A           87 ANLKPGMNILEVGTGS-GWNAALISEI-VK-TDVYTIERIPELVEFAKRNLERAG-V-KNVHVILGDGSKGFPPKAPYDV  161 (235)
T ss_dssp             HTCCTTCCEEEECCTT-SHHHHHHHHH-HC-SCEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCCCEEEEEeCCc-CHHHHHHHHH-hC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CCcEEEECCcccCCCCCCCccE
Confidence            3567889999999996 5666777772 23 899999999999999999999998 4 4599999997432222235999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |++......       +.+.+.+.|+|||++++....+
T Consensus       162 Ii~~~~~~~-------~~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          162 IIVTAGAPK-------IPEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EEECSBBSS-------CCHHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHH-------HHHHHHHhcCCCcEEEEEEecC
Confidence            997765421       2247889999999999977543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.34  E-value=2.9e-12  Score=121.62  Aligned_cols=105  Identities=22%  Similarity=0.282  Sum_probs=83.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++|||||||+ |+-+++.|+   .|+ +|++||.|+ +++.|+++++..| ++++|+++.+|+.++..+ .+||+|+
T Consensus        82 ~~~k~VLDvG~Gt-GiLs~~Aa~---aGA~~V~ave~s~-~~~~a~~~~~~n~-~~~~i~~i~~~~~~~~lp-e~~Dviv  154 (376)
T 4hc4_A           82 LRGKTVLDVGAGT-GILSIFCAQ---AGARRVYAVEASA-IWQQAREVVRFNG-LEDRVHVLPGPVETVELP-EQVDAIV  154 (376)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECST-THHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             cCCCEEEEeCCCc-cHHHHHHHH---hCCCEEEEEeChH-HHHHHHHHHHHcC-CCceEEEEeeeeeeecCC-ccccEEE
Confidence            4789999999998 556677777   554 799999996 8899999999999 899999999999887544 5799998


Q ss_pred             eccc--ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAAL--VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~--v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..-+  .......-..++....+.|+|||.++-..
T Consensus       155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            5321  11222356678888999999999987543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.34  E-value=2.6e-12  Score=114.14  Aligned_cols=98  Identities=21%  Similarity=0.280  Sum_probs=78.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|||||||+ |..+..+++   .|.+|+++|+|+++++.|++...      .  .++++|+.+++...+.||+|+..
T Consensus        54 ~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~------~--~~~~~d~~~~~~~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREKGV------K--NVVEAKAEDLPFPSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHHTC------S--CEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHhhcC------C--CEEECcHHHCCCCCCCEEEEEEc
Confidence            788999999997 556677877   47899999999999999998633      1  28999998877655689999876


Q ss_pred             ccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+ ++. .+..++++++.+.|+|||.+++..
T Consensus       122 ~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          122 GDVLSYV-ENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             SSHHHHC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhcc-ccHHHHHHHHHHHcCCCeEEEEEe
Confidence            432 322 337889999999999999999865

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.34  E-value=2.2e-12  Score=120.02  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=86.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++...|.   .++++.+|+.+..  .+.||+|+
T Consensus       194 ~~~~~~VLDlGcG~-G~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Iv  266 (343)
T 2pjd_A          194 PHTKGKVLDVGCGA-GVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAANGV---EGEVFASNVFSEV--KGRFDMII  266 (343)
T ss_dssp             TTCCSBCCBTTCTT-SHHHHHHHH-HCTTCBCEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTC--CSCEEEEE
T ss_pred             cCCCCeEEEecCcc-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCEEEEccccccc--cCCeeEEE
Confidence            45678999999997 455667777 46778999999999999999999999883   4788999987643  35799999


Q ss_pred             ecccccC----ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGM----SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~----~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+...+.    +.....++++++.+.|+|||.+++...
T Consensus       267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            8654322    346678999999999999999988653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.33  E-value=1.6e-12  Score=115.07  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-cccC-----CCc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-KEKL-----GEY  203 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~~~~-----~~f  203 (284)
                      ++.+|||+|||++.++ +.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+. ...+     +.|
T Consensus        65 ~~~~vLDlG~G~G~~~-~~la~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIY-PLLGA-TLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHH-HHHHH-HHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHH-HHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            5789999999985554 55665 2467999999999999999999999999 677899999998662 2111     469


Q ss_pred             cEEEecc-cccCC-------------hHHHHHHHHHHHhhcCCCcEEEE
Q 036061          204 DCIFLAA-LVGMS-------------KEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       204 D~V~~aa-~v~~~-------------~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      |+|+.+. +....             .+++..++..+.+.|||||.+.+
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            9999873 22111             02234567778888888886654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.33  E-value=4.9e-11  Score=112.32  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=83.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cccc-CCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKEK-LGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~~-~~~fD  204 (284)
                      ...++++||||| |+ |..++.+|+ ..++.+|+++|+|+++++.|++++++.| +. +++|+++|+.+ ++.. .+.||
T Consensus       169 ~~~~~~~VLDlG-G~-G~~~~~la~-~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          169 GDLENKDIFVLG-DD-DLTSIALML-SGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRKPLPDYALHKFD  243 (373)
T ss_dssp             TCSTTCEEEEES-CT-TCHHHHHHH-HTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTSCCCTTTSSCBS
T ss_pred             CCCCCCEEEEEC-CC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhhhchhhccCCcc
Confidence            345689999999 97 556677777 3456799999999999999999999999 55 89999999988 4432 24799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcE-EEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGV-LLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~-lv~r~  240 (284)
                      +|+++...+  .....++++++.+.|+|||+ +++..
T Consensus       244 ~Vi~~~p~~--~~~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          244 TFITDPPET--LEAIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             EEEECCCSS--HHHHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             EEEECCCCc--hHHHHHHHHHHHHHcccCCeEEEEEE
Confidence            999875332  12347899999999999994 34443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.32  E-value=6.4e-12  Score=116.17  Aligned_cols=108  Identities=20%  Similarity=0.229  Sum_probs=82.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC---------CCCCCeEEEEecccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI---------EFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G---------~l~~~I~f~~~D~~~~~  197 (284)
                      ...++.+|||||||+ |..++.+++...+..+|+++|+|+++++.|+++++..|         .+..+++|+++|+.+..
T Consensus       102 ~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          102 DINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence            567889999999998 55566777733466899999999999999999998642         02368999999998764


Q ss_pred             cc--CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          198 EK--LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 ~~--~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..  .+.||+|+++..-      ...+++++.+.|+|||.+++-..
T Consensus       181 ~~~~~~~fD~V~~~~~~------~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          181 EDIKSLTFDAVALDMLN------PHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             -------EEEEEECSSS------TTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cccCCCCeeEEEECCCC------HHHHHHHHHHhcCCCcEEEEEeC
Confidence            22  3469999975432      22388999999999999998664

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.32  E-value=2.4e-12  Score=116.59  Aligned_cols=109  Identities=9%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             CCCCEEEEeccCCChhHHHHH---HhhcCCCcEE--EEEeCChHHHHHHHHHHHhcCCCCCCeE--EEEecccccc----
Q 036061          129 VNPKKVAFVGSGPMPLTSIVM---AKNHLKSTHF--DNFDIDEAANDVARQIVSSDIEFEKRMK--FVTCDIMQVK----  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~L---A~~~~~g~~V--~~iDid~~ai~~Ar~~~~~~G~l~~~I~--f~~~D~~~~~----  197 (284)
                      .++.+|||||||++.+|...+   +. ..++.+|  +++|+|++|++.|++.++..+.+ .+++  +.++|+.+++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~-~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQA-QYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHH-HSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHh-hCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhc
Confidence            567899999999875553322   22 1367755  99999999999999998765212 4554  4567766544    


Q ss_pred             --ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...+.||+|+....+++ .++..+.+++++++|||||.+++-.
T Consensus       129 ~~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCceeEEEEeeeeee-cCCHHHHHHHHHHHcCCCcEEEEEE
Confidence              23467999987654422 2567789999999999999999854

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.32  E-value=2e-12  Score=116.58  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----------------CCC--------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----------------FEK--------  184 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----------------l~~--------  184 (284)
                      .++.+|||||||++. +++.+++  ..+.+|+|+|+|+.|++.|++.+++.+.                ...        
T Consensus        70 ~~~~~vLDiGcG~G~-~~~l~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  146 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV-YQLLSAC--SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  146 (289)
T ss_dssp             SCCSEEEEETCTTCC-GGGTTGG--GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCeEEEECCCcCh-HHHHhhc--cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence            477899999999855 5555544  3578999999999999999986643210                000        


Q ss_pred             ----CeEEEEecccc-cccc-----CCCccEEEecccccC---ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          185 ----RMKFVTCDIMQ-VKEK-----LGEYDCIFLAALVGM---SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       185 ----~I~f~~~D~~~-~~~~-----~~~fD~V~~aa~v~~---~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          .++++++|+.+ .+..     .+.||+|+....+..   +.++..++++++.+.|||||.|++..
T Consensus       147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                26788889977 3321     234999997654311   14578999999999999999999864

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.32  E-value=1.1e-11  Score=117.60  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=85.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEecccccccc----CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDIMQVKEK----LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~~~~~~~----~~~  202 (284)
                      .++++|||+|||+++ -++.+|+   .|+ +|+++|+|++|++.|+++++..| +.+ +++|+++|+.+....    ...
T Consensus       211 ~~~~~VLDl~cGtG~-~sl~la~---~ga~~V~~vD~s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAA-FSVAAAM---GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTH-HHHHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEeeccCH-HHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHHhCCC
Confidence            578899999999854 5577777   455 89999999999999999999999 565 899999999875432    237


Q ss_pred             ccEEEecccc-----cC---ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALV-----GM---SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v-----~~---~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|+++.--     +.   ......+++..+.+.|+|||.+++.+.
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999986421     11   124456788899999999999998774

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=1.5e-12  Score=113.42  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEeccccccc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK-----STHFDNFDIDEAANDVARQIVSSDIEF----EKRMKFVTCDIMQVKE  198 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~G~l----~~~I~f~~~D~~~~~~  198 (284)
                      ..++.+|||||||+ |..+..+++....     ..+|+++|+|+++++.|++++.+.| +    ..+++++++|+.+...
T Consensus        82 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~  159 (227)
T 1r18_A           82 LKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGYP  159 (227)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCCG
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEEECCcccCCC
Confidence            56788999999998 5566667762111     3599999999999999999998865 1    2589999999987333


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +.+.||+|+......       .+.+++.+.|||||++++-...
T Consensus       160 ~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 PNAPYNAIHVGAAAP-------DTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGCSEEEEEECSCBS-------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             cCCCccEEEECCchH-------HHHHHHHHHhcCCCEEEEEEec
Confidence            335799999876552       1347889999999999997753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.29  E-value=6.8e-12  Score=119.88  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=78.3

Q ss_pred             CCCCEEEEeccC------CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---
Q 036061          129 VNPKKVAFVGSG------PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---  199 (284)
Q Consensus       129 ~~~~~VL~IGsG------~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---  199 (284)
                      .++.+|||||||      ++|. ++.+++..+++++|+|+|+|+++.        . .  ..+|+|+++|+.+++..   
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~-Sl~la~~~fP~a~V~GVDiSp~m~--------~-~--~~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGG-SLRMWKSFFPRGQIYGLDIMDKSH--------V-D--ELRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCH-HHHHHHHHCTTCEEEEEESSCCGG--------G-C--BTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHH-HHHHHHHhCCCCEEEEEECCHHHh--------h-c--CCCcEEEEecccccchhhhh
Confidence            567999999999      5454 455555456899999999999972        1 1  36899999999886554   


Q ss_pred             ---CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          200 ---LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       200 ---~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         .+.||+||.+...  ...+..+.|++++++|||||++++.+-
T Consensus       283 ~~~d~sFDlVisdgsH--~~~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          283 ARRYGPFDIVIDDGSH--INAHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             HHHHCCEEEEEECSCC--CHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             hcccCCccEEEECCcc--cchhHHHHHHHHHHhcCCCeEEEEEec
Confidence               4689999976542  347788999999999999999999764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.28  E-value=1.3e-11  Score=119.96  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~  205 (284)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+.+++.+++++++.| + .+|+++++|+.++.. ..+.||.
T Consensus       102 ~~~~g~~VLDlcaGpGgkt-~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~-~nv~v~~~Da~~l~~~~~~~FD~  178 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKS-TQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-V-SNAIVTNHAPAELVPHFSGFFDR  178 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHH-HHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-C-SSEEEECCCHHHHHHHHTTCEEE
T ss_pred             CCCCCCEEEEECCCcCHHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhhhccccCCE
Confidence            4678899999999997766 4566533455899999999999999999999999 4 479999999987653 2357999


Q ss_pred             EEeccc---ccC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAAL---VGM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~---v~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++-   .|+   +++.               ..++++++.+.|||||+|++.+
T Consensus       179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            998753   111   1111               1389999999999999999866

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.28  E-value=1.4e-11  Score=116.82  Aligned_cols=109  Identities=20%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD  204 (284)
                      .++++|||+|||+++ -++.+|+  ....+|+++|+|+++++.|+++++..| +.++++|+++|+.+....    ...||
T Consensus       216 ~~~~~VLDl~~G~G~-~~~~la~--~g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYTGG-FAIHAAI--AGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTTTH-HHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCCCH-HHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHHHHHHHHhhCCCCC
Confidence            478999999999854 5677787  223499999999999999999999999 566899999999876542    35799


Q ss_pred             EEEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++.-- +.+.       ....+++..+.+.|+|||.+++.+.
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99987522 1111       4567899999999999999988764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.28  E-value=1.7e-11  Score=111.90  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=84.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||.++++ +.+|+  ...++|+++|+||.|++.++++++..| ++++|+++++|+.+++.. +.||.|+
T Consensus       123 ~~~g~~VlD~~aG~G~~~-i~~a~--~g~~~V~avD~np~a~~~~~~N~~~N~-v~~~v~~~~~D~~~~~~~-~~~D~Vi  197 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLS-LPIAV--YGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGE-NIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTT-HHHHH--HTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred             cCCCCEEEEecCcCcHHH-HHHHH--hcCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCcHHHhccc-cCCCEEE
Confidence            478999999999987665 66676  245799999999999999999999999 799999999999887643 5799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...-     ...++++...+.++|||++.+..
T Consensus       198 ~~~p~-----~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYVV-----RTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCCS-----SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCC-----cHHHHHHHHHHHcCCCCEEEEEe
Confidence            76432     12357788889999999986643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.26  E-value=4.2e-11  Score=114.15  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V  206 (284)
                      ..++++|||+|||++++ ++.+|+   .|+.|+++|+|+.|++.|+++++..| +..  ++.++|+.+..... +.||+|
T Consensus       212 ~~~g~~VLDlg~GtG~~-sl~~a~---~ga~V~avDis~~al~~a~~n~~~ng-~~~--~~~~~D~~~~l~~~~~~fD~I  284 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGF-ALRAAR---KGAYALAVDKDLEALGVLDQAALRLG-LRV--DIRHGEALPTLRGLEGPFHHV  284 (393)
T ss_dssp             CCTTCEEEEESCTTTHH-HHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-CCC--EEEESCHHHHHHTCCCCEEEE
T ss_pred             hcCCCeEEEcccchhHH-HHHHHH---cCCeEEEEECCHHHHHHHHHHHHHhC-CCC--cEEEccHHHHHHHhcCCCCEE
Confidence            35689999999998654 577777   57889999999999999999999999 443  57799998865432 359999


Q ss_pred             Eecccc-cCC-------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMS-------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~-------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++... ...       .....++++.+.+.|+|||.|++-+.
T Consensus       285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            987532 111       13457899999999999999997664

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.26  E-value=1.3e-11  Score=114.83  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||++++ ++. |+   .+.+|+++|+|+.+++.|+++++..| +.++++|+++|+.+..   +.||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~-~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~~~---~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPF-SIA-CK---NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVREVD---VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHH-HHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEccCccCHH-HHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHHhc---CCCcEEEE
Confidence            5789999999998655 455 66   57899999999999999999999999 6779999999998765   68999998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +..-     .-.++++.+.+.|+|||.+++.+.
T Consensus       265 dpP~-----~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          265 NLPK-----FAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             CCTT-----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcH-----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence            7421     112789999999999999988663

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.26  E-value=2.1e-10  Score=97.77  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||++ ..++.+++  ....+|+++|+|+.+++.|++++...| +  +++++++|+.+++   ..||+|
T Consensus        46 ~~~~~~~vlD~g~G~G-~~~~~l~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~---~~~D~v  116 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTG-VLSYGALL--LGAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSEFN---SRVDIV  116 (207)
T ss_dssp             TSSTTCEEEEETCTTC-HHHHHHHH--TTCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGGCC---CCCSEE
T ss_pred             CCCCcCEEEEeeCCCC-HHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHHcC---CCCCEE
Confidence            4567899999999985 55667777  223479999999999999999999888 4  8999999998753   379999


Q ss_pred             EecccccC-ChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          207 FLAALVGM-SKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       207 ~~aa~v~~-~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.+...+. ......++++.+.+.+  |+.+++.
T Consensus       117 ~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          117 IMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             EECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            98754322 2244567899999988  7766655

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.26  E-value=2.1e-11  Score=119.05  Aligned_cols=108  Identities=17%  Similarity=0.190  Sum_probs=85.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~  208 (284)
                      ++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++.| + .+++++++|+.++.. ..+.||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~-~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~-~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTT-QISARMNNEGAILANEFSASRVKVLHANISRCG-I-SNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHH-HHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHhhhhccccCCEEEE
Confidence            88999999999977664 566633446899999999999999999999999 4 479999999987654 3357999998


Q ss_pred             cccc---cC-----------Ch-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV---GM-----------SK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v---~~-----------~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++-.   |+           +.       ....++++++.+.|||||+|++.+
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            5321   11           11       113579999999999999999966

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.26  E-value=1.7e-11  Score=111.73  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=80.3

Q ss_pred             CCCEEEEeccCC--ChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----c--CC
Q 036061          130 NPKKVAFVGSGP--MPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----K--LG  201 (284)
Q Consensus       130 ~~~~VL~IGsG~--lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~--~~  201 (284)
                      ...+|||||||+  .+.+ ..+|++..|+++|+++|.||.|++.||+++...+  ..+++|+++|+.+...    .  .+
T Consensus        78 g~~q~LDLGcG~pT~~~~-~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNL-HEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCH-HHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHH-HHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccChhhhhccccccc
Confidence            457999999994  3444 3344445789999999999999999999887654  2579999999987521    0  12


Q ss_pred             Ccc-----EEEecccc-cCChHH-HHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYD-----CIFLAALV-GMSKEE-KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD-----~V~~aa~v-~~~~~~-k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||     .|++.+.+ .++..+ ...+++.+++.|+|||+|++..
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            344     45555544 445444 4789999999999999999986

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.25  E-value=1.2e-11  Score=120.22  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~  205 (284)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+.+++.+++++++.| +.  |+++++|+.++.. ..+.||+
T Consensus        98 ~~~~g~~VLDlgaGpG~kt-~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~l~~~~~~~FD~  173 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKT-THLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRALAEAFGTYFHR  173 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHHHHHHHCSCEEE
T ss_pred             CcCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHHhhhhccccCCE
Confidence            4578899999999997765 5566533445799999999999999999999999 44  9999999988663 3357999


Q ss_pred             EEecccc---cC---Ch---------------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---GM---SK---------------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~~---~~---------------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++-.   |+   ++               ....++++++.+.|||||+|++.+
T Consensus       174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9975421   11   01               112789999999999999999865

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.25  E-value=2e-11  Score=105.54  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=79.1

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      +...+.+..  ++.+|||||||++ ..+..+++   .    +++|+|+++++.|++.         +++++++|+.+++.
T Consensus        38 ~~~~l~~~~--~~~~vLDiG~G~G-~~~~~l~~---~----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~   98 (219)
T 1vlm_A           38 ELQAVKCLL--PEGRGVEIGVGTG-RFAVPLKI---K----IGVEPSERMAEIARKR---------GVFVLKGTAENLPL   98 (219)
T ss_dssp             HHHHHHHHC--CSSCEEEETCTTS-TTHHHHTC---C----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCS
T ss_pred             HHHHHHHhC--CCCcEEEeCCCCC-HHHHHHHH---H----hccCCCHHHHHHHHhc---------CCEEEEcccccCCC
Confidence            334444444  3889999999985 45566665   2    9999999999999985         47899999988765


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..+.||+|+....+.. .++..++++++.+.|+|||.+++...
T Consensus        99 ~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           99 KDESFDFALMVTTICF-VDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             CTTCEEEEEEESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCeeEEEEcchHhh-ccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            5567999997654421 14567899999999999999999763

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.24  E-value=2.4e-11  Score=115.20  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=86.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC-CCCeEEEEecccccccc----CCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF-EKRMKFVTCDIMQVKEK----LGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l-~~~I~f~~~D~~~~~~~----~~~f  203 (284)
                      .++++|||+|||++++ ++.+|+  ....+|+++|+|+++++.|+++++..| + .++++|+++|+.+....    ...|
T Consensus       219 ~~~~~VLDl~cG~G~~-sl~la~--~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGF-AVSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSH-HHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEeeccCCHH-HHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHhcCCCC
Confidence            5788999999998655 567777  124599999999999999999999998 6 55899999999886543    2479


Q ss_pred             cEEEecccc-cC-------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALV-GM-------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v-~~-------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.-- +.       ......+++..+.+.|+|||++++.+.
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999987521 11       114567899999999999999998774

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.24  E-value=4.5e-11  Score=115.49  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=85.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~f  203 (284)
                      .+.++.+|||+||||++.|. .+|+. .++ ++|+++|+|+.+++.+++++++.| + .+++++++|+.+.+..+  +.|
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~-~la~~-~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~~f  331 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTT-HLAEL-MKNKGKIYAFDVDKMRMKRLKDFVKRMG-I-KIVKPLVKDARKAPEIIGEEVA  331 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHH-HHHHH-TTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCTTCCSSSSCSSCE
T ss_pred             CCCCcCEEEEeCCCccHHHH-HHHHH-cCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEEEcChhhcchhhccCCC
Confidence            46788999999999977665 45652 445 899999999999999999999999 4 57999999998765323  469


Q ss_pred             cEEEeccc---ccC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAAL---VGM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~---v~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|++++-   .|.   .+..               ..++++++.+.|||||++++.+
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99997532   111   1111               1579999999999999999876

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.24  E-value=6.2e-12  Score=113.54  Aligned_cols=100  Identities=19%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..+++||+||||. |..+..+++ + + .+|+++|+|+++++.|++.+...  +.-..+++++.+|+.+..   +.||+|
T Consensus        71 ~~~~~VL~iG~G~-G~~~~~ll~-~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~I  143 (262)
T 2cmg_A           71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLI  143 (262)
T ss_dssp             SCCCEEEEESSCC-HHHHHHHTT-S-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred             CCCCEEEEEeCCc-CHHHHHHHh-C-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEE
Confidence            5678999999996 667777777 3 5 89999999999999999876431  201358999999998765   679999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++++.-    +  ..+++.+.+.|+|||++++..+
T Consensus       144 i~d~~d----p--~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          144 FCLQEP----D--IHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             EESSCC----C--HHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EECCCC----h--HHHHHHHHHhcCCCcEEEEEcC
Confidence            987431    2  2389999999999999999754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.23  E-value=5.3e-11  Score=106.63  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=80.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+|.+|||||||.+|++.-++     ++.+++++|||+.+++.+++++...|.   +.+|.++|....+.. +.||+|++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g~---~~~~~v~D~~~~~~~-~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKDW---DFTFALQDVLCAPPA-EAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTTC---EEEEEECCTTTSCCC-CBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeecccCCCC-CCcchHHH
Confidence            578999999999887764332     789999999999999999999988884   789999999765543 47999986


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-.+ .+..++|...+ .+.+.|++++++|--.
T Consensus       175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            6443 33445565555 7888999999887654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.23  E-value=5e-11  Score=112.43  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=79.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||++ ..++.+|+ ..+.++|+|+|+|+.+++.|+++++..| ++++++|+++|+.+++...+.||+|+
T Consensus       215 ~~~~~~vLD~gCGsG-~~~i~~a~-~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~i~~~~~D~~~~~~~~~~fD~Ii  291 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSG-TILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDKIKFIQGDATQLSQYVDSVDFAI  291 (373)
T ss_dssp             TCCSCCEEETTCTTC-HHHHHHHH-TTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred             cCCCCEEEEccCcCc-HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCcccCCcCEEE
Confidence            577899999999985 55677777 3333499999999999999999999999 78899999999999877667899999


Q ss_pred             ecccccCC-------hHHHHHHHHHHHhhc
Q 036061          208 LAALVGMS-------KEEKVKIIKHIRKYM  230 (284)
Q Consensus       208 ~aa~v~~~-------~~~k~~il~~l~~~l  230 (284)
                      .+..-+..       ...+.++++.+.+.+
T Consensus       292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             ECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            86432211       123477889999988

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.22  E-value=3.1e-11  Score=122.90  Aligned_cols=108  Identities=10%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc-CCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK-LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~-~~~fD~  205 (284)
                      .++++|||+|||++++ ++.+|+   .|+ +|+++|+|+.++++|+++++..| +. ++++|+++|+.++... .+.||+
T Consensus       538 ~~g~~VLDlg~GtG~~-sl~aa~---~ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSA-TVHAGL---GGARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             CTTCEEEEESCTTCHH-HHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             cCCCcEEEeeechhHH-HHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHhcCCCccE
Confidence            4788999999998665 566676   444 69999999999999999999999 56 6899999999885443 357999


Q ss_pred             EEecccc-c---------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALV-G---------MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v-~---------~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++.-- +         .......+++..+.+.|+|||+|++.+.
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9987521 1         1125677899999999999999998764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.22  E-value=3e-11  Score=103.56  Aligned_cols=98  Identities=17%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc--cccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV--KEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~--~~~~~~fD~V  206 (284)
                      .++.+|||||||+ |..+..+++  . |.+|+++|+|+.+++.|++..         .+++++|+.+.  +...+.||+|
T Consensus        31 ~~~~~vLdiG~G~-G~~~~~l~~--~-~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSS-GALGAAIKE--N-GTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHT--T-TCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEE
Confidence            6789999999997 556677777  2 699999999999999988732         27899998763  3333579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +....+ ++  .+..++++++.+.|+|||.+++...
T Consensus        98 ~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           98 IFGDVLEHL--FDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEESCGGGS--SCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             EECChhhhc--CCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            976544 33  3456899999999999999999764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.22  E-value=2.7e-11  Score=114.48  Aligned_cols=106  Identities=14%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD~  205 (284)
                      ++.+|||+|||++ .-++.+|+   .+.+|+++|+|+.+++.|+++++..| +.+ ++|+++|+.+....    ...||+
T Consensus       209 ~~~~VLDlg~G~G-~~~~~la~---~~~~v~~vD~s~~~~~~a~~n~~~n~-~~~-~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAG-GFALHLAL---GFREVVAVDSSAEALRRAEENARLNG-LGN-VRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTT-HHHHHHHH---HEEEEEEEESCHHHHHHHHHHHHHTT-CTT-EEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccC-HHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-CCC-ceEEECCHHHHHHHHHhcCCCeeE
Confidence            7789999999985 45677887   26899999999999999999999999 444 99999999886543    347999


Q ss_pred             EEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..- +.+.       ....+++..+.+.|+|||.+++.+.
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9987532 2111       4557899999999999999998774

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.22  E-value=2.3e-11  Score=99.49  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------cc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------EK  199 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------~~  199 (284)
                      ..++.+|||+|||+ |..+..+++...++.+|+++|+|+ +++.            .+++++++|+.+.+        ..
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCC
Confidence            47788999999998 555667777334679999999999 6421            47999999998764        34


Q ss_pred             CCCccEEEecccccC---ChHH-H------HHHHHHHHhhcCCCcEEEEEec
Q 036061          200 LGEYDCIFLAALVGM---SKEE-K------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~---~~~~-k------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+.||+|+.+.....   ...+ .      .++++.+.+.|+|||.+++...
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            457999997653311   1111 1      6899999999999999998664

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.21  E-value=1.4e-11  Score=116.83  Aligned_cols=107  Identities=11%  Similarity=0.140  Sum_probs=80.8

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEeccccccccCCC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM-KFVTCDIMQVKEKLGE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I-~f~~~D~~~~~~~~~~  202 (284)
                      ......++.+|||||||+ |..+..+++   .|.+|+|+|+|+.+++.|++.    | +.... .|..+++.+++...+.
T Consensus       101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~gvD~s~~~~~~a~~~----~-~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCND-GIMLRTIQE---AGVRHLGFEPSSGVAAKAREK----G-IRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HTTTCSSSCEEEEETCTT-TTTHHHHHH---TTCEEEEECCCHHHHHHHHTT----T-CCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHH---cCCcEEEECCCHHHHHHHHHc----C-CCcceeeechhhHhhcccCCCC
Confidence            344556788999999997 566777887   578999999999999999885    4 22222 2344555555544568


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|+....+ +.  ++..++++++++.|||||++++...
T Consensus       172 fD~I~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          172 ANVIYAANTLCHI--PYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEEESCGGGC--TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEECChHHhc--CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999976554 33  4788999999999999999999764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.21  E-value=1.9e-11  Score=121.32  Aligned_cols=104  Identities=16%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~V  206 (284)
                      ..|.|||||||| +|+-+..||+   .|++|||||+++.+++.|+..+...|.  .+|+|.++|+.++..  ..++||+|
T Consensus        65 ~~~~~vLDvGCG-~G~~~~~la~---~ga~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCA-QGFFSLSLAS---KGATIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCT-TSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCC-CcHHHHHHHh---CCCEEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHHHHhhhccCCCccEE
Confidence            467899999999 5788999999   799999999999999999999998873  379999999998743  34579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +....+ +.+..+...-+..+.+.+++++...+
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            876654 33223323334456666777765433

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.21  E-value=7.6e-11  Score=113.06  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD  204 (284)
                      .+.++.+|||+||||++.|. .+|+ ..++++|+++|+|+.+++.+++++++.|.   +++++++|+.+...  ..+.||
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~~~~~l~~~~~~~~~~g~---~~~~~~~D~~~~~~~~~~~~fD  317 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTT-HILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFD  317 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHH-HHHH-HCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHTTCCEE
T ss_pred             CCCCcCeEEEECCCchHHHH-HHHH-HcCCCEEEEECCCHHHHHHHHHHHHHcCC---CeEEEeCchhhchhhcccCCCC
Confidence            45788999999999977665 4565 35568999999999999999999999993   58999999987652  235799


Q ss_pred             EEEecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|++++-.   |.   .+..               ..++++++.+.|||||++++.+
T Consensus       318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99975421   11   1111               1589999999999999999976

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.20  E-value=4.8e-11  Score=108.58  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++.+|||||||++.+ +..|++   .+.+|+++|+|+.+++.|++.+...| +.++++++++|+.+.+  +..||
T Consensus        23 ~~~~~~~~~VLDiG~G~G~l-t~~L~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~D~~~~~--~~~fD   95 (285)
T 1zq9_A           23 KAALRPTDVVLEVGPGTGNM-TVKLLE---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTD--LPFFD   95 (285)
T ss_dssp             HTCCCTTCEEEEECCTTSTT-HHHHHH---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSC--CCCCS
T ss_pred             hcCCCCCCEEEEEcCcccHH-HHHHHh---hCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcceeccc--chhhc
Confidence            34567889999999998655 566776   46799999999999999999998877 5568999999998654  34799


Q ss_pred             EEEecccccCChHHHHHHHHH--------------H--HhhcCCCcEE
Q 036061          205 CIFLAALVGMSKEEKVKIIKH--------------I--RKYMKDGGVL  236 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~--------------l--~~~l~pGg~l  236 (284)
                      +|+.+....+..+.-.+++++              +  ++.++|||.+
T Consensus        96 ~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~  143 (285)
T 1zq9_A           96 TCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL  143 (285)
T ss_dssp             EEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred             EEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence            998754332222323334332              1  3578888875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.19  E-value=9.9e-11  Score=99.24  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCC--CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK--STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~--g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      ..++.+|||||||++.++ ..++++ .+  +++|+|+|+|+.+           .  ..+++|+++|+.+..        
T Consensus        20 ~~~~~~vLDlGcG~G~~~-~~l~~~-~~~~~~~v~gvD~s~~~-----------~--~~~v~~~~~d~~~~~~~~~~~~~   84 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWC-QVILER-TKNYKNKIIGIDKKIMD-----------P--IPNVYFIQGEIGKDNMNNIKNIN   84 (201)
T ss_dssp             CCTTEEEEEESCTTCHHH-HHHHHH-TTTSCEEEEEEESSCCC-----------C--CTTCEEEECCTTTTSSCCC----
T ss_pred             CCCCCEEEEeCCCCCHHH-HHHHHH-cCCCCceEEEEeCCccC-----------C--CCCceEEEccccchhhhhhcccc
Confidence            467789999999996655 556662 44  7999999999832           2  247999999998754        


Q ss_pred             -----------------ccCCCccEEEecccccC---ChHHH-------HHHHHHHHhhcCCCcEEEEEec
Q 036061          198 -----------------EKLGEYDCIFLAALVGM---SKEEK-------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 -----------------~~~~~fD~V~~aa~v~~---~~~~k-------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                                       .....||+|+.+.....   ...+.       .++++.+.+.|+|||.+++...
T Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             -------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                             23357999997643222   11221       2488999999999999998653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.19  E-value=2.4e-11  Score=109.96  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||.+|++..++.  ..+.++++++|+|+.+++.+++++..+|.   +.+|.++|...-+ .-+.||+|++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~--~~p~a~y~a~DId~~~le~a~~~l~~~g~---~~~~~v~D~~~~~-p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMG--LPAETVYIASDIDARLVGFVDEALTRLNV---PHRTNVADLLEDR-LDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTT--CCTTCEEEEEESBHHHHHHHHHHHHHTTC---CEEEEECCTTTSC-CCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHh--hCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeeecccC-CCCCcchHHH
Confidence            5589999999998888755443  36899999999999999999999999994   5899999986533 3357999987


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-.+ .++.+.|...+ .+.+.|+|||++|--.
T Consensus       205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp  236 (281)
T 3lcv_B          205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP  236 (281)
T ss_dssp             TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred             HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence            6555 44556666777 8999999999988754

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.18  E-value=4.5e-11  Score=100.13  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||+ |..++.+++   .+ +|+|+|+|+.+++.        .   .+++|+++|+.+ +...+.||+|+.
T Consensus        22 ~~~~~vLD~GcG~-G~~~~~l~~---~~-~v~gvD~s~~~~~~--------~---~~~~~~~~d~~~-~~~~~~fD~i~~   84 (170)
T 3q87_B           22 LEMKIVLDLGTST-GVITEQLRK---RN-TVVSTDLNIRALES--------H---RGGNLVRADLLC-SINQESVDVVVF   84 (170)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHTT---TS-EEEEEESCHHHHHT--------C---SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred             CCCCeEEEeccCc-cHHHHHHHh---cC-cEEEEECCHHHHhc--------c---cCCeEEECChhh-hcccCCCCEEEE
Confidence            4677999999997 566777877   44 99999999999987        2   478999999987 333367999997


Q ss_pred             cccccC-Ch-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGM-SK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~-~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..... +.       .+..++++.+.+.+ |||.+++..
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            653321 11       13456888999998 999998865

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.16  E-value=9.3e-11  Score=110.12  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+..+|||||||+ |..+..+++ .+|+.+++++|+ |.+++.|++        ..+|+|+.+|..+ +.+ .. |+|+
T Consensus       201 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p-~~-D~v~  266 (368)
T 3reo_A          201 FEGLTTIVDVGGGT-GAVASMIVA-KYPSINAINFDL-PHVIQDAPA--------FSGVEHLGGDMFD-GVP-KG-DAIF  266 (368)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCC-CC-SEEE
T ss_pred             ccCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeh-HHHHHhhhh--------cCCCEEEecCCCC-CCC-CC-CEEE
Confidence            45678999999997 556677776 478999999999 898877764        1489999999976 333 23 9998


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+ .++.++..++++++++.|+|||+|++.+
T Consensus       267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            77655 5677888899999999999999998865

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.16  E-value=6.4e-11  Score=111.46  Aligned_cols=100  Identities=10%  Similarity=0.105  Sum_probs=77.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---------  200 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---------  200 (284)
                      .+.+|||+|||++. -++.+|+   ...+|+++|+|++|++.|+++++..| + ++++|+++|+.++...+         
T Consensus       213 ~~~~vLDl~cG~G~-~~l~la~---~~~~V~gvd~~~~ai~~a~~n~~~ng-~-~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGNGN-FSLALAR---NFDRVLATEIAKPSVAAAQYNIAANH-I-DNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTTSH-HHHHHGG---GSSEEEEECCCHHHHHHHHHHHHHTT-C-CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCCCH-HHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHHHHHhhccccccc
Confidence            46899999999755 4568887   46799999999999999999999999 4 58999999998764321         


Q ss_pred             -------CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          201 -------GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       201 -------~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                             ..||+|+++.--       ..+...+.+.++++|.+++-+.+
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred             cccccccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEECC
Confidence                   269999987432       12334566667799999888743

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.16  E-value=1.4e-10  Score=108.91  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=80.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+..+|||||||++ ..+..+++ .+|+.+++++|+ |.+++.|++        ..+|+|+.+|..+ +.+. . |+|+
T Consensus       199 ~~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~p~-~-D~v~  264 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVG-ATVAAIAA-HYPTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDMFK-EVPS-G-DTIL  264 (364)
T ss_dssp             TTTCSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC-C-SEEE
T ss_pred             ccCCCEEEEeCCCCC-HHHHHHHH-HCCCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCcCC-CCCC-C-CEEE
Confidence            467799999999985 55666766 478999999999 888877664        1489999999976 4332 3 9998


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+ .++.++..++++++++.|+|||+|++.+
T Consensus       265 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          265 MKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            77655 5777888899999999999999998865

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.15  E-value=3.7e-10  Score=104.29  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~f  203 (284)
                      .+.++.+|||+||||++.|.. +|+....+++|+++|+|+.+++.++++++++| + .+++++++|+.++....   ..|
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~-la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSH-LAALLKNQGKIFAFDLDAKRLASMATLLARAG-V-SCCELAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHH-HHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGSCTTCGGGTTE
T ss_pred             CCCCCCEEEEeCCChhHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCChHhcCccccccCCC
Confidence            467889999999999877654 56533456899999999999999999999999 4 57999999998765432   469


Q ss_pred             cEEEecccc---cC-Ch--H-----------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV---GM-SK--E-----------------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v---~~-~~--~-----------------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|++++--   |. ..  +                 ...+++++..+.++ ||+|++.+
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            999986421   21 00  1                 01357888888876 99999866

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=99.97  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=84.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++.+ +..+      +.+|+++|+|+.                 +++++++|+.+.+...+.||+|+.
T Consensus        66 ~~~~~vLDiG~G~G~~-~~~l------~~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           66 PASLVVADFGCGDCRL-ASSI------RNPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             CTTSCEEEETCTTCHH-HHHC------CSCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             CCCCeEEEECCcCCHH-HHHh------hccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEE
Confidence            5678999999998543 3322      378999999987                 357889999886655567999997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCcc------CCCcEEEEEecCCcceeeeEEEEee
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHD------LLDFELLSVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~d------l~gfe~~~~~hP~~~v~nsvi~~r~  281 (284)
                      ...++.  .+..++++++.+.|+|||.+++.....  .  ++  .+++      -.||++.......+.  -.++++||
T Consensus       122 ~~~l~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~--~--~~--~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~~~~k  190 (215)
T 2zfu_A          122 CLSLMG--TNIRDFLEEANRVLKPGGLLKVAEVSS--R--FE--DVRTFLRAVTKLGFKIVSKDLTNSH--FFLFDFQK  190 (215)
T ss_dssp             ESCCCS--SCHHHHHHHHHHHEEEEEEEEEEECGG--G--CS--CHHHHHHHHHHTTEEEEEEECCSTT--CEEEEEEE
T ss_pred             ehhccc--cCHHHHHHHHHHhCCCCeEEEEEEcCC--C--CC--CHHHHHHHHHHCCCEEEEEecCCCe--EEEEEEEe
Confidence            655442  667889999999999999999976322  1  11  2221      169998775543332  24566776

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.13  E-value=4.4e-10  Score=108.11  Aligned_cols=99  Identities=23%  Similarity=0.327  Sum_probs=79.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||++ .-++.+|+   .+.+|+++|+|++|++.|+++++..| +.  ++|+++|+.++...  .||+|+
T Consensus       288 ~~~~~~VLDlgcG~G-~~sl~la~---~~~~V~gvD~s~~ai~~A~~n~~~ng-l~--v~~~~~d~~~~~~~--~fD~Vv  358 (425)
T 2jjq_A          288 LVEGEKILDMYSGVG-TFGIYLAK---RGFNVKGFDSNEFAIEMARRNVEINN-VD--AEFEVASDREVSVK--GFDTVI  358 (425)
T ss_dssp             HCCSSEEEEETCTTT-HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-CC--EEEEECCTTTCCCT--TCSEEE
T ss_pred             cCCCCEEEEeeccch-HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEECChHHcCcc--CCCEEE
Confidence            467889999999975 55677888   47899999999999999999999999 44  99999999886543  799999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++..- ++.    ..+++.+. .++|||++++..
T Consensus       359 ~dPPr~g~~----~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          359 VDPPRAGLH----PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             ECCCTTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred             EcCCccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence            87542 322    34666665 489999988864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.13  E-value=4.1e-10  Score=95.76  Aligned_cols=100  Identities=19%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||+|||++ ..++.+++  ....+|+++|+|+.+++.|++++.       +++|+++|+.+++   +.||+|
T Consensus        48 ~~~~~~~vlD~gcG~G-~~~~~l~~--~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v  114 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNG-ILACGSYL--LGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTW  114 (200)
T ss_dssp             TSSBTSEEEEETCTTC-HHHHHHHH--TTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEE
T ss_pred             CCCCCCEEEEEeCCcc-HHHHHHHH--cCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEE
Confidence            4567899999999974 55677877  233479999999999999999654       6899999998754   579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++... ........++++.+.+.+  |+++++.+.
T Consensus       115 ~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~  148 (200)
T 1ne2_A          115 IMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA  148 (200)
T ss_dssp             EECCCC-------CHHHHHHHHHHE--EEEEEEEEG
T ss_pred             EECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC
Confidence            987643 222233457899999998  666655543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.13  E-value=7.8e-11  Score=111.75  Aligned_cols=102  Identities=19%  Similarity=0.100  Sum_probs=82.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc---------------CCCCCCeEEEEeccc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD---------------IEFEKRMKFVTCDIM  194 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~---------------G~l~~~I~f~~~D~~  194 (284)
                      ++.+|||+|||++. -++.+|+ ..++.+|+++|+|+++++.|+++++..               | +.+ ++++++|+.
T Consensus        47 ~~~~VLDl~aGtG~-~~l~~a~-~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~~-i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATGI-RGIRFAL-ETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EKT-IVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTSH-HHHHHHH-HSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SSE-EEEEESCHH
T ss_pred             CCCEEEECCCchhH-HHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CCc-eEEEcCcHH
Confidence            68899999999855 4566776 245678999999999999999999998               7 544 999999998


Q ss_pred             cccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.... ..||+|+++..-     ...++++...+.++|||++.+..
T Consensus       123 ~~~~~~~~~fD~I~lDP~~-----~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLMAERHRYFHFIDLDPFG-----SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHSTTCEEEEEECCSS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhccCCCCEEEeCCCC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence            765443 469999987642     12578999999999999887754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.13  E-value=1.7e-10  Score=107.19  Aligned_cols=99  Identities=13%  Similarity=0.262  Sum_probs=79.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..+++ .+|+.+++++|+ +.+++.|++    .    .+++|+.+|..+ +  ...||+|+
T Consensus       186 ~~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~~~-~--~p~~D~v~  251 (352)
T 1fp2_A          186 FDGLESIVDVGGGTG-TTAKIICE-TFPKLKCIVFDR-PQVVENLSG----S----NNLTYVGGDMFT-S--IPNADAVL  251 (352)
T ss_dssp             HTTCSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC----B----TTEEEEECCTTT-C--CCCCSEEE
T ss_pred             cccCceEEEeCCCcc-HHHHHHHH-HCCCCeEEEeeC-HHHHhhccc----C----CCcEEEeccccC-C--CCCccEEE
Confidence            356789999999974 55666776 468899999999 999988775    1    359999999865 2  23599999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCC---CcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKD---GGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~p---Gg~lv~r~  240 (284)
                      +...+ .++.++..++++++++.|+|   ||++++..
T Consensus       252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            76554 56666777999999999999   99988865

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.12  E-value=3.2e-10  Score=103.90  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ....++.+|||||||++.+ +..|++   .+.+|+++|+|+.+++.|++++...| + .+++|+++|+.+.+.  ..||+
T Consensus        38 ~~~~~~~~VLDiG~G~G~l-t~~La~---~~~~v~~vDi~~~~~~~a~~~~~~~~-~-~~v~~~~~D~~~~~~--~~~D~  109 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGNL-TVKLLP---LAKKVITIDIDSRMISEVKKRCLYEG-Y-NNLEVYEGDAIKTVF--PKFDV  109 (299)
T ss_dssp             HCCCTTCEEEEECCTTSTT-HHHHTT---TSSEEEEECSCHHHHHHHHHHHHHTT-C-CCEEC----CCSSCC--CCCSE
T ss_pred             cCCCCcCEEEEEcCcCcHH-HHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECchhhCCc--ccCCE
Confidence            3567889999999998555 566777   47899999999999999999998877 3 689999999987543  58999


Q ss_pred             EEeccc
Q 036061          206 IFLAAL  211 (284)
Q Consensus       206 V~~aa~  211 (284)
                      |+.+..
T Consensus       110 Vv~n~p  115 (299)
T 2h1r_A          110 CTANIP  115 (299)
T ss_dssp             EEEECC
T ss_pred             EEEcCC
Confidence            997643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.11  E-value=1.6e-10  Score=108.37  Aligned_cols=99  Identities=16%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++       . .+|+|+.+|..+ +  ...||+|+
T Consensus       207 ~~~~~~vLDvG~G~G-~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~-~--~~~~D~v~  272 (372)
T 1fp1_D          207 FEGISTLVDVGGGSG-RNLELIIS-KYPLIKGINFDL-PQVIENAPP-------L-SGIEHVGGDMFA-S--VPQGDAMI  272 (372)
T ss_dssp             TTTCSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC-------C-TTEEEEECCTTT-C--CCCEEEEE
T ss_pred             cCCCCEEEEeCCCCc-HHHHHHHH-HCCCCeEEEeCh-HHHHHhhhh-------c-CCCEEEeCCccc-C--CCCCCEEE
Confidence            467799999999985 55666776 468899999999 999987765       1 369999999976 3  23499999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+ .++.++..++++++++.|+|||++++..
T Consensus       273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            76654 5666666799999999999999998864

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.11  E-value=1.1e-10  Score=111.34  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEeccccccc-cC-CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKR-MKFVTCDIMQVKE-KL-GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~-I~f~~~D~~~~~~-~~-~~fD  204 (284)
                      .++.+|||++||+++++ +.+|++ ..| .+|+++|+|+++++.++++++..| ++++ ++++++|+.++.. .. +.||
T Consensus        51 ~~g~~VLDlfaGtG~~s-l~aa~~-~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da~~~l~~~~~~~fD  127 (392)
T 3axs_A           51 GRPVKVADPLSASGIRA-IRFLLE-TSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEANFFLRKEWGFGFD  127 (392)
T ss_dssp             CSCEEEEESSCTTSHHH-HHHHHH-CSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred             CCCCEEEECCCcccHHH-HHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCHHHHHHHhhCCCCc
Confidence            45789999999987665 555552 345 689999999999999999999999 6777 9999999988765 44 3699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++.. +.    ..++++.+.+.++|||+|.+..
T Consensus       128 ~V~lDP~-g~----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          128 YVDLDPF-GT----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEECCS-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCC-cC----HHHHHHHHHHHhCCCCEEEEEe
Confidence            9999874 21    1358899999999999887755

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.08  E-value=1.4e-11  Score=109.21  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             HHHhcCC-CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCC-CCCeEEEE-ecccccc
Q 036061          122 ILDENGV-VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEF-EKRMKFVT-CDIMQVK  197 (284)
Q Consensus       122 ~l~~~~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l-~~~I~f~~-~D~~~~~  197 (284)
                      ++..+.. .++++|||||||++. .+..+++   .| .+|+|+|+|++|++.|++...+.+.. ..++++.. +|.....
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~-~t~~la~---~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGG-FTDVMLQ---NGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR  103 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSH-HHHHHHH---TTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred             HHHHcCCCCCCCEEEEEccCCCH-HHHHHHh---cCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence            3444444 456799999999855 5566777   35 49999999999999988754332200 01233322 1211100


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .+...||++|.. +        .++++++.+.|||||.+++-
T Consensus       104 ~d~~~~D~v~~~-l--------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFIS-L--------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSC-G--------GGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhh-H--------HHHHHHHHHhccCCCEEEEE
Confidence            111234444322 1        56999999999999999885

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.06  E-value=1.2e-09  Score=104.94  Aligned_cols=102  Identities=13%  Similarity=0.128  Sum_probs=79.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~  202 (284)
                      ...++.+|||+|||+ |.-++.||+   .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.+...    ..+.
T Consensus       283 ~~~~~~~VLDlgcG~-G~~~~~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          283 DVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNG-L-QNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             TCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             cCCCCCEEEECCCCC-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHhhhhhhhcCC
Confidence            456778999999997 566788888   47899999999999999999999998 4 489999999987432    2347


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+++.-- +.     .++++.+.+ ++|++++.+..
T Consensus       357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEES
T ss_pred             CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEEC
Confidence            9999987542 32     146666664 68888776643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.06  E-value=4.6e-10  Score=96.22  Aligned_cols=121  Identities=21%  Similarity=0.374  Sum_probs=82.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------C-
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------L-  200 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~-  200 (284)
                      ..++.+|||+||||++.| ..+|+   .+++|+|+|+++.+           .  ..+++|+++|+++....      . 
T Consensus        23 ~~~g~~VLDlG~G~G~~s-~~la~---~~~~V~gvD~~~~~-----------~--~~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWT-QVLNS---LARKIISIDLQEME-----------E--IAGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             SCTTCEEEEESCTTCHHH-HHHTT---TCSEEEEEESSCCC-----------C--CTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHH-HHHHH---cCCcEEEEeccccc-----------c--CCCeEEEEccccCHHHHHHHHHHhh
Confidence            467899999999997765 56777   38999999999852           2  25799999999874310      0 


Q ss_pred             ----CCccEEEecccc---cCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCcccc--ccCccCCCccC-CCcEEE
Q 036061          201 ----GEYDCIFLAALV---GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKGARA--FLYPVVEKHDL-LDFELL  263 (284)
Q Consensus       201 ----~~fD~V~~aa~v---~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~glr~--~lYp~v~~~dl-~gfe~~  263 (284)
                          +.||+|+.+...   +...       +....+++.+.+.|||||.|++....|-..  ++.      .+ ..|+.+
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~------~l~~~F~~v  159 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIA------IWRKNFSSY  159 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHH------HHGGGEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHH------HHHHhcCEE
Confidence                379999976421   2111       113578899999999999999877544221  110      11 348888


Q ss_pred             EEecCCcc
Q 036061          264 SVFHPTNE  271 (284)
Q Consensus       264 ~~~hP~~~  271 (284)
                      ....|...
T Consensus       160 ~~~kP~as  167 (191)
T 3dou_A          160 KISKPPAS  167 (191)
T ss_dssp             EEECC---
T ss_pred             EEECCCCc
Confidence            88888553

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.04  E-value=7.1e-10  Score=101.85  Aligned_cols=111  Identities=16%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CC-CCCCeEEEEeccccccccC-CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IE-FEKRMKFVTCDIMQVKEKL-GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~-l~~~I~f~~~D~~~~~~~~-~~fD  204 (284)
                      ..|++||.||.|. |.++..+.+ +.+..+|+.+||||+.++.|++.+...  |. -..|++++.+|+....... +.||
T Consensus        82 p~pk~VLIiGgGd-G~~~revlk-~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           82 GHAKHVLIIGGGD-GAMLREVTR-HKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCeEEEECCCc-hHHHHHHHH-cCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            6789999999996 566666766 566789999999999999999987432  21 1469999999999876544 3699


Q ss_pred             EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++..=+.....   -.++++.+.+.|+|||++++.++
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            99988752111111   25789999999999999999764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.02  E-value=5e-10  Score=102.75  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=70.5

Q ss_pred             HHHhcCC-CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEeccccccc-
Q 036061          122 ILDENGV-VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK-FVTCDIMQVKE-  198 (284)
Q Consensus       122 ~l~~~~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~-f~~~D~~~~~~-  198 (284)
                      ++..+.+ .++.+|||||||++++| .++++  ....+|+|+|+|+.|++++.+   ..    .++. +...|+..+.. 
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t-~~L~~--~ga~~V~aVDvs~~mL~~a~r---~~----~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFT-DVMLQ--NGAKLVYAVDVGTNQLVWKLR---QD----DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHH-HHHHH--TTCSEEEEECSSSSCSCHHHH---TC----TTEEEECSCCGGGCCGG
T ss_pred             HHHhcCCCccccEEEecCCCccHHH-HHHHh--CCCCEEEEEECCHHHHHHHHH---hC----cccceecccCceecchh
Confidence            3445554 46789999999997776 45666  234599999999999998654   11    2333 23344443332 


Q ss_pred             --cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          199 --KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       199 --~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                        +...||+|+++... .+   -..++.++++.|+|||.+++-
T Consensus       146 ~l~~~~fD~v~~d~sf-~s---l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSF-IS---LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GCTTCCCSEEEECCSS-SC---GGGTHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCCCCEEEEEeeH-hh---HHHHHHHHHHHcCcCCEEEEE
Confidence              12249998865432 11   267999999999999999885

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.02  E-value=1.1e-09  Score=100.32  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEeccCC----ChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE-EEeccccccccCC
Q 036061          127 GVVNPKKVAFVGSGP----MPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKF-VTCDIMQVKEKLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~----lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f-~~~D~~~~~~~~~  201 (284)
                      ...++.+|||+|||.    +|-+ ..+++...++++|+|+|+|+.           .    .+++| +++|+.+.+.. +
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-----------v----~~v~~~i~gD~~~~~~~-~  122 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-----------V----SDADSTLIGDCATVHTA-N  122 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-----------B----CSSSEEEESCGGGCCCS-S
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-----------C----CCCEEEEECccccCCcc-C
Confidence            457889999999943    2333 445653344799999999998           1    26789 99999876543 5


Q ss_pred             CccEEEecccccC----------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGM----------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~----------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+|+.+.....          ......++++.+.++|||||.|++...
T Consensus       123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            7999997532111          012345899999999999999998653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.00  E-value=1.1e-09  Score=92.28  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCC--------cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-Eeccccccc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKS--------THFDNFDIDEAANDVARQIVSSDIEFEKRMKFV-TCDIMQVKE  198 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g--------~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~  198 (284)
                      ..++.+|||||||+ |..++.++++....        ++|+++|+|+.+           +  ..+++++ ++|+.+...
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~--~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P--LEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C--CTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c--CCCCeEEEeccCCCHHH
Confidence            46789999999998 55667777732222        899999999842           2  1478999 999875431


Q ss_pred             --------cCCCccEEEecccc---cCChHHH-------HHHHHHHHhhcCCCcEEEEEec
Q 036061          199 --------KLGEYDCIFLAALV---GMSKEEK-------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 --------~~~~fD~V~~aa~v---~~~~~~k-------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                              ..+.||+|+.+...   +....+.       ..+++.+.+.|+|||.+++...
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                    12479999965321   1111222       4789999999999999999864

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.00  E-value=2.1e-10  Score=95.63  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=72.5

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLG  201 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~  201 (284)
                      ..+..++.+||+||||.                  +++|+|++|++.|++..   +   .+++|+++|+.+++.   ..+
T Consensus         7 ~~g~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~---~---~~~~~~~~d~~~~~~~~~~~~   62 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALT---G---NEGRVSVENIKQLLQSAHKES   62 (176)
T ss_dssp             TTTCCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHT---T---TTSEEEEEEGGGGGGGCCCSS
T ss_pred             ccCCCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhc---c---cCcEEEEechhcCccccCCCC
Confidence            44678999999999984                  12799999999999853   2   258999999998776   456


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|+....++.-.++..++++++++.|||||++++..
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            799999754433211455789999999999999999965

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.99  E-value=1.1e-09  Score=100.15  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcC----CCcEEEEEeCCh--------------------------HHHHHHHHHHHh
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHL----KSTHFDNFDIDE--------------------------AANDVARQIVSS  178 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~----~g~~V~~iDid~--------------------------~ai~~Ar~~~~~  178 (284)
                      ..|.+||++|+. .|+|+++||....    ++.+|+++|..+                          ...+.+++++++
T Consensus       105 ~~pg~IlEiGv~-~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          105 NVPGDLVETGVW-RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TCCCEEEEECCT-TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             CCCCcEEEeecC-chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            568899999998 5899999987322    488999999642                          147889999999


Q ss_pred             cCCC-CCCeEEEEeccccccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          179 DIEF-EKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       179 ~G~l-~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .| + .++|+++.||+.+.....  +.||+||+++..   -+.....++.+.++|+|||++++.+.
T Consensus       184 ~g-l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 YD-LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TT-CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS---HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             cC-CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            99 6 489999999998866544  469999999863   24567899999999999999999885

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.99  E-value=1.2e-09  Score=101.72  Aligned_cols=98  Identities=15%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..+++ ..++.+++++|+ +.+++.|++       . .+++|+.+|..+ +  ...||+|++
T Consensus       192 ~~~~~vlDvG~G~G-~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~-~--~~~~D~v~~  257 (358)
T 1zg3_A          192 EGLESLVDVGGGTG-GVTKLIHE-IFPHLKCTVFDQ-PQVVGNLTG-------N-ENLNFVGGDMFK-S--IPSADAVLL  257 (358)
T ss_dssp             HTCSEEEEETCTTS-HHHHHHHH-HCTTSEEEEEEC-HHHHSSCCC-------C-SSEEEEECCTTT-C--CCCCSEEEE
T ss_pred             cCCCEEEEECCCcC-HHHHHHHH-HCCCCeEEEecc-HHHHhhccc-------C-CCcEEEeCccCC-C--CCCceEEEE
Confidence            46789999999984 55666776 468899999999 788877764       1 359999999976 3  336999997


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCC---CcEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKD---GGVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~p---Gg~lv~r~  240 (284)
                      ...+ .++.++..++++++++.|+|   ||++++..
T Consensus       258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            6654 46666667999999999999   99888855

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.99  E-value=4.3e-09  Score=96.66  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++......++.+|||||||++.+ +..|++   .+.+|++||+|+++++.+++.+...    .+++++++|+.++.....
T Consensus        42 Iv~~l~~~~~~~VLEIG~G~G~l-T~~La~---~~~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~~~~  113 (295)
T 3gru_A           42 AVESANLTKDDVVLEIGLGKGIL-TEELAK---NAKKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDLNKL  113 (295)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHH-HHHHHH---HSSEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCGGGS
T ss_pred             HHHhcCCCCcCEEEEECCCchHH-HHHHHh---cCCEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCcccC
Confidence            34445667889999999998655 456777   3789999999999999999998732    479999999987665545


Q ss_pred             CccEEEecc
Q 036061          202 EYDCIFLAA  210 (284)
Q Consensus       202 ~fD~V~~aa  210 (284)
                      .||.|+.+.
T Consensus       114 ~fD~Iv~Nl  122 (295)
T 3gru_A          114 DFNKVVANL  122 (295)
T ss_dssp             CCSEEEEEC
T ss_pred             CccEEEEeC
Confidence            699998653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.98  E-value=2.3e-09  Score=99.51  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=83.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCC----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK----STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~----g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..++.+|||+|||+++++. .++++...    +.+|+|+|+|+.+++.|+.++...| +  +++++++|..+.. ....|
T Consensus       128 ~~~~~~VlDp~cGsG~~l~-~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~~~-~~~~f  202 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLT-TVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLANL-LVDPV  202 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHH-HHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTSCC-CCCCE
T ss_pred             CCCCCEEEeCCCCccHHHH-HHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCCcc-ccCCc
Confidence            3467899999999977654 44442221    2899999999999999999999888 4  6899999987632 23579


Q ss_pred             cEEEecccccC-ChHH----------------HHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          204 DCIFLAALVGM-SKEE----------------KVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       204 D~V~~aa~v~~-~~~~----------------k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |+|+.+.-.+. +..+                ...+++++.+.|+|||++++-.+++
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            99998754221 1121                1368999999999999999988655

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.97  E-value=9.5e-10  Score=98.96  Aligned_cols=78  Identities=15%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-------HHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-------AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-  200 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-------~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-  200 (284)
                      .++.+|||+|||+ |..++.+|+   .|++|+++|+|+       ++++.|+++++..| +.++|+|+++|+.+....+ 
T Consensus        82 ~~~~~VLDlgcG~-G~~a~~lA~---~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~~d~~~~l~~~~  156 (258)
T 2r6z_A           82 TAHPTVWDATAGL-GRDSFVLAS---LGLTVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHFGNAAEQMPALV  156 (258)
T ss_dssp             GGCCCEEETTCTT-CHHHHHHHH---TTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEESCHHHHHHHHH
T ss_pred             CCcCeEEEeeCcc-CHHHHHHHH---hCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEECCHHHHHHhhh
Confidence            4568999999996 677788998   578999999999       99999999998888 5678999999998754322 


Q ss_pred             ---CCccEEEeccc
Q 036061          201 ---GEYDCIFLAAL  211 (284)
Q Consensus       201 ---~~fD~V~~aa~  211 (284)
                         ..||+|+++..
T Consensus       157 ~~~~~fD~V~~dP~  170 (258)
T 2r6z_A          157 KTQGKPDIVYLDPM  170 (258)
T ss_dssp             HHHCCCSEEEECCC
T ss_pred             ccCCCccEEEECCC
Confidence               57999998753

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.96  E-value=1.1e-09  Score=104.90  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC--CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL--GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~--~~fD  204 (284)
                      .++.+|||+|||+ |..++.+|+   .+.+|+++|+|+.+++.|+++++.+  | + ++++|+++|+.+.....  +.||
T Consensus        92 ~~g~~VLDLgcG~-G~~al~LA~---~g~~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGGL-GIDFIALMS---KASQGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCSS-SHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcHHHhhhhccCCCce
Confidence            3589999999996 677788988   5789999999999999999999998  8 4 78999999998753322  4799


Q ss_pred             EEEecc
Q 036061          205 CIFLAA  210 (284)
Q Consensus       205 ~V~~aa  210 (284)
                      +||++.
T Consensus       166 vV~lDP  171 (410)
T 3ll7_A          166 YIYVDP  171 (410)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999875

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.96  E-value=9.7e-09  Score=97.74  Aligned_cols=116  Identities=13%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhh---cCC----------------------------------CcEEEEEeCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKN---HLK----------------------------------STHFDNFDID  165 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~---~~~----------------------------------g~~V~~iDid  165 (284)
                      +...+..++.+|+|.|||++.+. +-.|..   ..|                                  ..+|+|+|+|
T Consensus       194 l~l~~~~~~~~vlDp~CGSGt~~-ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          194 VLLTSWHPDRPFYDPVCGSGTIP-IEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHSCCCTTSCEEETTCTTSHHH-HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHhCCCCCCeEEEcCCCCCHHH-HHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            33445677899999999986543 333331   112                                  2569999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh---HHHHHHHHHHHhhcCC--CcEEEEEe
Q 036061          166 EAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK---EEKVKIIKHIRKYMKD--GGVLLVRS  240 (284)
Q Consensus       166 ~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~---~~k~~il~~l~~~l~p--Gg~lv~r~  240 (284)
                      +.|++.|+++++..| +.++|+|+++|+.+++.+ ..||+|+++.--|...   ++-.+++..+.+.+++  |+.+.+-+
T Consensus       273 ~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAG-LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHHHHHHHHTT-CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999999999999 788899999999987654 4799999885433222   2334456666666665  77766655


Q ss_pred             c
Q 036061          241 A  241 (284)
Q Consensus       241 ~  241 (284)
                      +
T Consensus       351 ~  351 (393)
T 3k0b_A          351 S  351 (393)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.93  E-value=1.2e-08  Score=96.79  Aligned_cols=116  Identities=12%  Similarity=0.070  Sum_probs=85.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHh---hcCC----------------------------------CcEEEEEeCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAK---NHLK----------------------------------STHFDNFDID  165 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~---~~~~----------------------------------g~~V~~iDid  165 (284)
                      +...+..++..++|.|||++.+. +-.|.   ...|                                  ..+|+|+|+|
T Consensus       187 l~l~~~~~~~~llDp~CGSGt~l-IEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          187 ILLSNWFPDKPFVDPTCGSGTFC-IEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHHH-HHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHhCCCCCCeEEEeCCcCCHHH-HHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            33445578899999999975443 33332   1112                                  2569999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccC---ChHHHHHHHHHHHhhcCC--CcEEEEEe
Q 036061          166 EAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGM---SKEEKVKIIKHIRKYMKD--GGVLLVRS  240 (284)
Q Consensus       166 ~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~---~~~~k~~il~~l~~~l~p--Gg~lv~r~  240 (284)
                      +.|++.|+++++..| +.++|+|+++|+.+++.. ..||+|+++.--|.   +.++..+++..+.+.+++  |+.+.+-+
T Consensus       266 ~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          266 GRMVEIARKNAREVG-LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHHHHHHHHTT-CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            999999999999999 788999999999987654 47999998854321   335556777777777776  88776666


Q ss_pred             c
Q 036061          241 A  241 (284)
Q Consensus       241 ~  241 (284)
                      +
T Consensus       344 ~  344 (384)
T 3ldg_A          344 N  344 (384)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.89  E-value=1.6e-08  Score=95.88  Aligned_cols=115  Identities=16%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhc---CC----------------------------------CcEEEEEeCCh
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNH---LK----------------------------------STHFDNFDIDE  166 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~---~~----------------------------------g~~V~~iDid~  166 (284)
                      ...+..++.+|||.|||++.+ ++..|...   .|                                  ..+|+|+|+|+
T Consensus       189 ~~~~~~~~~~vlDp~CGSGt~-lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~  267 (385)
T 3ldu_A          189 YLTPWKAGRVLVDPMCGSGTI-LIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDE  267 (385)
T ss_dssp             HTSCCCTTSCEEETTCTTCHH-HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCH
T ss_pred             HhhCCCCCCeEEEcCCCCCHH-HHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCH
Confidence            344557789999999998644 34444311   11                                  26799999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh---HHHHHHHHHHHhhcCC--CcEEEEEec
Q 036061          167 AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK---EEKVKIIKHIRKYMKD--GGVLLVRSA  241 (284)
Q Consensus       167 ~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~---~~k~~il~~l~~~l~p--Gg~lv~r~~  241 (284)
                      .|++.|++++...| +++.|+|.++|+.+++.+ ..||+|+.+.--+...   ++..+++..+.+.+++  |+.+.+-++
T Consensus       268 ~ai~~Ar~Na~~~g-l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          268 ESIDIARENAEIAG-VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHHHHHHT-CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHHHHHHHcC-CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            99999999999999 677899999999987653 4799999876443222   3345667777777766  776666554

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=4.7e-09  Score=96.63  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---c--CC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---K--LG  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~--~~  201 (284)
                      .+.++.+|||+|||+++.| +.+++ ..++++|+++|+|++|++.|+++++..|   .+++|+++|..+++.   .  ..
T Consensus        23 ~~~~g~~vLD~g~G~G~~s-~~la~-~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHS-RAILE-HCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHH-HHHHH-HCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEEeCCcCHHH-HHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhcCCC
Confidence            5578899999999987666 45555 2458999999999999999999998877   489999999987642   1  14


Q ss_pred             CccEEEecccc
Q 036061          202 EYDCIFLAALV  212 (284)
Q Consensus       202 ~fD~V~~aa~v  212 (284)
                      .||.|+++..+
T Consensus        98 ~~D~Vl~D~gv  108 (301)
T 1m6y_A           98 KVDGILMDLGV  108 (301)
T ss_dssp             CEEEEEEECSC
T ss_pred             CCCEEEEcCcc
Confidence            79999977544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.88  E-value=5.3e-10  Score=101.66  Aligned_cols=105  Identities=11%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-hcCCCCCCeEEE--EeccccccccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-SDIEFEKRMKFV--TCDIMQVKEKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-~~G~l~~~I~f~--~~D~~~~~~~~~~f  203 (284)
                      ...++.+|||+||||+++| ..+|+   . .+|+|+|+++ ++..|++... ... ...+++|+  ++|+.+++  .+.|
T Consensus        79 ~~~~g~~VLDlGcGtG~~s-~~la~---~-~~V~gVD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~f  149 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWS-YYAAS---Q-PNVREVKAYT-LGTSGHEKPRLVET-FGWNLITFKSKVDVTKME--PFQA  149 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHH-HHHHT---S-TTEEEEEEEC-CCCTTSCCCCCCCC-TTGGGEEEECSCCGGGCC--CCCC
T ss_pred             CCCCCCEEEEeccCCCHHH-HHHHH---c-CCEEEEECch-hhhhhhhchhhhhh-cCCCeEEEeccCcHhhCC--CCCc
Confidence            3467899999999997765 66777   2 6899999998 5333322100 001 11278999  99998865  3579


Q ss_pred             cEEEeccc-c-cCChHH-H--HHHHHHHHhhcCCCc--EEEEEe
Q 036061          204 DCIFLAAL-V-GMSKEE-K--VKIIKHIRKYMKDGG--VLLVRS  240 (284)
Q Consensus       204 D~V~~aa~-v-~~~~~~-k--~~il~~l~~~l~pGg--~lv~r~  240 (284)
                      |+|+.+.. + +....+ .  .++++.+.+.|+|||  .+++..
T Consensus       150 D~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          150 DTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99997643 1 111111 1  248999999999999  998855

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.87  E-value=2.1e-08  Score=88.92  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~f  203 (284)
                      .....++.+|||||||++.+| ..+++   .+.+|+++|+|+++++.|++.+...    .+++++++|+.+++... ..|
T Consensus        25 ~~~~~~~~~VLDiG~G~G~lt-~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~~~~~~~   96 (244)
T 1qam_A           25 NIRLNEHDNIFEIGSGKGHFT-LELVQ---RCNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFPKNQSY   96 (244)
T ss_dssp             TCCCCTTCEEEEECCTTSHHH-HHHHH---HSSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCCSSCCC
T ss_pred             hCCCCCCCEEEEEeCCchHHH-HHHHH---cCCeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCcccCCCe
Confidence            345577899999999986554 56666   3589999999999999999987542    48999999998876543 245


Q ss_pred             c
Q 036061          204 D  204 (284)
Q Consensus       204 D  204 (284)
                      +
T Consensus        97 ~   97 (244)
T 1qam_A           97 K   97 (244)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.87  E-value=5.2e-09  Score=94.22  Aligned_cols=112  Identities=19%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc------CCC-----cEEEEEeCCh---HH-----------HHHHHHHHHhc----
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH------LKS-----THFDNFDIDE---AA-----------NDVARQIVSSD----  179 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~------~~g-----~~V~~iDid~---~a-----------i~~Ar~~~~~~----  179 (284)
                      .++.+||+||+| .|++++.+++..      .|+     .+|+++|.+|   +.           .+.|+++++..    
T Consensus        59 ~~~~~ILEiGfG-tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           59 HPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSEEEEEESCCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCEEEEECCC-hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            456799999999 589998877632      453     5899999987   33           44778887751    


Q ss_pred             ------C--CCCCCeEEEEeccccccccC-----CCccEEEecccccC-ChHH-HHHHHHHHHhhcCCCcEEEEEec
Q 036061          180 ------I--EFEKRMKFVTCDIMQVKEKL-----GEYDCIFLAALVGM-SKEE-KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       180 ------G--~l~~~I~f~~~D~~~~~~~~-----~~fD~V~~aa~v~~-~~~~-k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                            +  .-..+++++.||+.+....+     ..||+||++++... .++. ..++++.+++.|+|||+|+.-++
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence                  1  00146789999999865544     26999999876421 1111 46799999999999999986444

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.86  E-value=5.2e-10  Score=101.06  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-hcCCCCCCeEEE--EeccccccccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-SDIEFEKRMKFV--TCDIMQVKEKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-~~G~l~~~I~f~--~~D~~~~~~~~~~f  203 (284)
                      ...++.+||||||||+++| ..+|+   . .+|+|||+++ ++..+++... ... ...+++|+  ++|+.+++  .+.|
T Consensus        71 ~~~~g~~VLDlGcGtG~~s-~~la~---~-~~V~gvD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~f  141 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWS-YYAAS---R-PHVMDVRAYT-LGVGGHEVPRITES-YGWNIVKFKSRVDIHTLP--VERT  141 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHH-HHHHT---S-TTEEEEEEEC-CCCSSCCCCCCCCB-TTGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCCEEEEeCcCCCHHH-HHHHH---c-CcEEEEECch-hhhhhhhhhhhhhc-cCCCeEEEecccCHhHCC--CCCC
Confidence            4577899999999998775 66777   2 7899999998 4322221100 000 11268999  99998765  3579


Q ss_pred             cEEEeccc-c-cCChHHH---HHHHHHHHhhcCCCc--EEEEEe
Q 036061          204 DCIFLAAL-V-GMSKEEK---VKIIKHIRKYMKDGG--VLLVRS  240 (284)
Q Consensus       204 D~V~~aa~-v-~~~~~~k---~~il~~l~~~l~pGg--~lv~r~  240 (284)
                      |+|+.+.. + +....+.   .++++.+.+.|+|||  .+++..
T Consensus       142 D~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          142 DVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            99997533 1 1111111   248999999999999  999865

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.85  E-value=2e-09  Score=99.09  Aligned_cols=105  Identities=10%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC----ChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI----DEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi----d~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~  202 (284)
                      ..++.+||||||||++.| ..+|+   . .+|+++|+    ++.+++.++  .+..|  .++++|+++ |+.+++  ...
T Consensus        80 ~~~g~~VLDlGcG~G~~s-~~la~---~-~~V~gvD~~~~~~~~~~~~~~--~~~~~--~~~v~~~~~~D~~~l~--~~~  148 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWS-YYCGG---L-KNVREVKGLTKGGPGHEEPIP--MSTYG--WNLVRLQSGVDVFFIP--PER  148 (305)
T ss_dssp             SCCCEEEEEETCTTSHHH-HHHHT---S-TTEEEEEEECCCSTTSCCCCC--CCSTT--GGGEEEECSCCTTTSC--CCC
T ss_pred             CCCCCEEEEEcCCCCHHH-HHHHh---c-CCEEEEeccccCchhHHHHHH--hhhcC--CCCeEEEeccccccCC--cCC
Confidence            467789999999998775 56777   2 58999999    554432111  12223  157999999 988754  357


Q ss_pred             ccEEEecccc--cCChHHH---HHHHHHHHhhcCCCcEEEEEecCc
Q 036061          203 YDCIFLAALV--GMSKEEK---VKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       203 fD~V~~aa~v--~~~~~~k---~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ||+|+.+...  +....+.   ..++..+.+.|||||.|++....+
T Consensus       149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999976432  2111222   258899999999999999965433

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.83  E-value=8.7e-09  Score=97.22  Aligned_cols=102  Identities=19%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||+|||++++ ++.++++..++.+|+|+|+|+.+++.|           .+++++++|..+... .+.||+|+.
T Consensus        38 ~~~~~vLD~gcGtG~~-~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~-~~~fD~Ii~  104 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPF-LRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP-GEAFDLILG  104 (421)
T ss_dssp             CTTCEEEEETCTTCHH-HHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCEEEECCCCChHH-HHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc-cCCCCEEEE
Confidence            4567999999998655 455665333678999999999998766           378999999987543 257999998


Q ss_pred             ccc-c--c--------CChHHHH-----------------HHHHHHHhhcCCCcEEEEEecCc
Q 036061          209 AAL-V--G--------MSKEEKV-----------------KIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       209 aa~-v--~--------~~~~~k~-----------------~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +.- .  +        +..+.+.                 .+++++.+.|+|||.+++-...+
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            642 1  1        2233332                 67999999999999998877543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.81  E-value=1.6e-10  Score=102.37  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~f  203 (284)
                      .....++.+|||||||++.++ ..+++   .+.+|+|+|+|+++++.|++++.  +  ..+++++++|+.+++... +.|
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~-~~l~~---~~~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLT-TKLAK---ISKQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCS-HHHHH---HSSEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTCCCSSEE
T ss_pred             hcCCCCCCEEEEEeCCCCHHH-HHHHH---hCCeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCcccCCCc
Confidence            345678889999999986665 55666   35899999999999999988765  2  358999999998876442 357


Q ss_pred             cEEEecccccCChHHHHHHH--------------HHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKII--------------KHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il--------------~~l~~~l~pGg~lv~r  239 (284)
                       .|+.+..-......-..++              +.+.+.|+|||.+.+-
T Consensus        96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence             4554421111112222222              4567777777765543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.77  E-value=2.2e-08  Score=89.98  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---  200 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---  200 (284)
                      ......++.+|||||||++.+ +..|++   .+.+|+++|+|+++++.+++.+...    .+++++++|+.+++.+.   
T Consensus        23 ~~~~~~~~~~VLEIG~G~G~l-t~~La~---~~~~V~avEid~~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~   94 (255)
T 3tqs_A           23 SAIHPQKTDTLVEIGPGRGAL-TDYLLT---ECDNLALVEIDRDLVAFLQKKYNQQ----KNITIYQNDALQFDFSSVKT   94 (255)
T ss_dssp             HHHCCCTTCEEEEECCTTTTT-HHHHTT---TSSEEEEEECCHHHHHHHHHHHTTC----TTEEEEESCTTTCCGGGSCC
T ss_pred             HhcCCCCcCEEEEEcccccHH-HHHHHH---hCCEEEEEECCHHHHHHHHHHHhhC----CCcEEEEcchHhCCHHHhcc
Confidence            344667889999999998655 456776   4689999999999999999988652    48999999998875421   


Q ss_pred             -CCccE
Q 036061          201 -GEYDC  205 (284)
Q Consensus       201 -~~fD~  205 (284)
                       +.||+
T Consensus        95 ~~~~~v  100 (255)
T 3tqs_A           95 DKPLRV  100 (255)
T ss_dssp             SSCEEE
T ss_pred             CCCeEE
Confidence             35883

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.77  E-value=4.2e-08  Score=88.94  Aligned_cols=103  Identities=15%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~  202 (284)
                      ......++ +|||||||++.+| ..|++   .+.+|+++|+|+++++.+++.+.  +   .+++++++|+.++..+. ..
T Consensus        41 ~~~~~~~~-~VLEIG~G~G~lt-~~L~~---~~~~V~avEid~~~~~~l~~~~~--~---~~v~vi~~D~l~~~~~~~~~  110 (271)
T 3fut_A           41 EAARPFTG-PVFEVGPGLGALT-RALLE---AGAEVTAIEKDLRLRPVLEETLS--G---LPVRLVFQDALLYPWEEVPQ  110 (271)
T ss_dssp             HHHCCCCS-CEEEECCTTSHHH-HHHHH---TTCCEEEEESCGGGHHHHHHHTT--T---SSEEEEESCGGGSCGGGSCT
T ss_pred             HhcCCCCC-eEEEEeCchHHHH-HHHHH---cCCEEEEEECCHHHHHHHHHhcC--C---CCEEEEECChhhCChhhccC
Confidence            34466777 9999999986665 55677   46899999999999999999764  2   48999999998876532 36


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||.|+.+.-.....+--.+++++   ..-+.+++++-
T Consensus       111 ~~~iv~NlPy~iss~il~~ll~~---~~~~~~~lm~Q  144 (271)
T 3fut_A          111 GSLLVANLPYHIATPLVTRLLKT---GRFARLVFLVQ  144 (271)
T ss_dssp             TEEEEEEECSSCCHHHHHHHHHH---CCEEEEEEEEE
T ss_pred             ccEEEecCcccccHHHHHHHhcC---CCCCEEEEEee
Confidence            88887654322233333344443   11234555553

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.74  E-value=1.1e-08  Score=98.54  Aligned_cols=114  Identities=13%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhc------------CCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEecc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNH------------LKSTHFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDI  193 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~------------~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~  193 (284)
                      .+.++.+|+|.|||++++. +.++++.            ..+.+++|+|+|+.+++.|+.++...| +.. ++++.++|.
T Consensus       168 ~~~~~~~VlDpacGsG~fl-~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~~~~~i~~gD~  245 (445)
T 2okc_A          168 NPQMGETVCDPACGTGGFL-LTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGTDRSPIVCEDS  245 (445)
T ss_dssp             CCCTTCCEEETTCTTCHHH-HHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCSSCCSEEECCT
T ss_pred             CCCCCCEEeccCCCcchHH-HHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCcCCCCEeeCCC
Confidence            3466789999999997764 4444421            135789999999999999999998888 443 788999998


Q ss_pred             ccccccCCCccEEEecccc-cCChH---------------HHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          194 MQVKEKLGEYDCIFLAALV-GMSKE---------------EKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v-~~~~~---------------~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ...+.. ..||+|+.+.-. +....               ....+++++.+.|+|||++++-.++|
T Consensus       246 l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          246 LEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             TTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            765432 379999977532 21111               11478999999999999998776543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.69  E-value=3.9e-08  Score=93.15  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----CC-CCCCeEEEEeccccccc----
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-----IE-FEKRMKFVTCDIMQVKE----  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----G~-l~~~I~f~~~D~~~~~~----  198 (284)
                      .+|++||.||.|- |.++..+.+ + +..+|+.+||||+.++.|++.+...     .. -..+++++.+|+.++..    
T Consensus       204 ~~pkrVLIIGgGd-G~~~revlk-h-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGD-GGILCEIVK-L-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTT-CHHHHHHHT-T-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCc-HHHHHHHHh-c-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            5679999999996 556666666 3 5589999999999999999976321     10 12579999999987653    


Q ss_pred             cCCCccEEEecccc--------cCCh-HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALV--------GMSK-EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v--------~~~~-~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.||+|+++..-        +... .-..++++.+.+.|+|||++++..
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            23479999988531        1111 113678999999999999999865

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.67  E-value=7e-08  Score=90.91  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccC-C
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKL-G  201 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~-~  201 (284)
                      .+.++.+|||+.+||+|=|+. ||. ...+..|+++|+|+..++..+++++++|.    ...++.+.+.|+..+.... +
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~-la~-~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLA-LLQ-TGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHH-HHH-TTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             CCCCCCEEEEecCCccHHHHH-HHH-hcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence            678999999999999988865 455 35667899999999999999999998873    1257999999998765433 4


Q ss_pred             CccEEEecccc-c----C---C--------hH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV-G----M---S--------KE-------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v-~----~---~--------~~-------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||.|++++-- |    .   +        .+       -..++|.+..+.+||||+||+.+
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            79999988632 1    1   0        00       12578999999999999999977

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.66  E-value=9.1e-09  Score=92.78  Aligned_cols=82  Identities=9%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCCCC--CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------CCCCeEEEEecccccc
Q 036061          127 GVVNP--KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-------FEKRMKFVTCDIMQVK  197 (284)
Q Consensus       127 ~~~~~--~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-------l~~~I~f~~~D~~~~~  197 (284)
                      +..++  .+|||+|||. |..++.+|+   .|++|+++|+++.+.+.+++.+++.+.       +.++|+++++|+.++.
T Consensus        83 ~l~~g~~~~VLDl~~G~-G~dal~lA~---~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L  158 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGL-GRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (258)
T ss_dssp             TCBTTBCCCEEETTCTT-CHHHHHHHH---HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred             cccCCCCCEEEEcCCcC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence            34566  8999999995 778899998   478999999999988888877654320       1257999999998865


Q ss_pred             ccC-CCccEEEecccc
Q 036061          198 EKL-GEYDCIFLAALV  212 (284)
Q Consensus       198 ~~~-~~fD~V~~aa~v  212 (284)
                      ... ..||+||++..-
T Consensus       159 ~~~~~~fDvV~lDP~y  174 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMF  174 (258)
T ss_dssp             TTCSSCCSEEEECCCC
T ss_pred             HhCcccCCEEEEcCCC
Confidence            433 369999998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.64  E-value=1.4e-07  Score=95.97  Aligned_cols=117  Identities=22%  Similarity=0.163  Sum_probs=81.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhh---cC--------------------------------------CCcEEEE
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKN---HL--------------------------------------KSTHFDN  161 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~---~~--------------------------------------~g~~V~~  161 (284)
                      +...+..++.+|+|.+||++.+ ++-.|..   ..                                      +..+|+|
T Consensus       183 l~~~~~~~~~~llDP~CGSGt~-lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G  261 (703)
T 3v97_A          183 VMRSGWQPGTPLLDPMCGSGTL-LIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYG  261 (703)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred             HHhhCCCCCCeEEecCCCCcHH-HHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEE
Confidence            3344557788999999997654 3333321   11                                      2368999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccccC---ChHHHHHH---HHHHHhhcCCC
Q 036061          162 FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGM---SKEEKVKI---IKHIRKYMKDG  233 (284)
Q Consensus       162 iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~---~~~~k~~i---l~~l~~~l~pG  233 (284)
                      +|+|+.|++.|++++...| +.+.|+|.++|+.++..+.  +.||+|+.+.--|.   +.++-.++   +.++.+.+.||
T Consensus       262 ~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g  340 (703)
T 3v97_A          262 SDSDARVIQRARTNARLAG-IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG  340 (703)
T ss_dssp             EESCHHHHHHHHHHHHHTT-CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTT
T ss_pred             EECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999 7888999999998875443  27999998854332   11222333   44455555689


Q ss_pred             cEEEEEec
Q 036061          234 GVLLVRSA  241 (284)
Q Consensus       234 g~lv~r~~  241 (284)
                      |.+.+-++
T Consensus       341 ~~~~ilt~  348 (703)
T 3v97_A          341 WNLSLFSA  348 (703)
T ss_dssp             CEEEEEES
T ss_pred             CeEEEEeC
Confidence            98877553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.63  E-value=4.3e-08  Score=87.82  Aligned_cols=66  Identities=11%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      .....++.+|||||||++.+|.  +++  ....+|+++|+|+++++.+++.+...    .+++++++|+.+++.
T Consensus        16 ~~~~~~~~~VLEIG~G~G~lt~--l~~--~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A           16 AINPQKGQAMVEIGPGLAALTE--PVG--ERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHCCCTTCCEEEECCTTTTTHH--HHH--TTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH
T ss_pred             hcCCCCcCEEEEECCCCcHHHH--hhh--CCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH
Confidence            3356788999999999987776  554  22223999999999999999866432    379999999987643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.51  E-value=3.7e-07  Score=92.35  Aligned_cols=106  Identities=10%  Similarity=0.149  Sum_probs=76.4

Q ss_pred             CCCEEEEeccCCChhHHHH--HHhhcC---------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          130 NPKKVAFVGSGPMPLTSIV--MAKNHL---------KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~--LA~~~~---------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      .+..||+||||+++++...  -++.+.         ...+|.+||.++.|+...++... .| ++++|+++.+|++++..
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-TTTCSEEEESCGGGHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-CCCeEEEEeCchhhccc
Confidence            3568999999999997432  222111         23599999999988876666554 67 78999999999998865


Q ss_pred             c-----CCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          199 K-----LGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       199 ~-----~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +     ..+.|+|+..-+= ..+.|--.+.|..+.+.|||||+++
T Consensus       487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            2     4679999844321 1123444568888899999999865

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.51  E-value=3.9e-07  Score=91.56  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             CCCEEEEeccCCChhHHHHHHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKN--HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .+..|++||||.||++...+...  .....+|.+||-+| +...|++++++.| ++++|+++.||++++..+ .+.|+|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~-~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE-WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT-TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc-CCCeEEEEeCcceeccCC-cccCEEE
Confidence            44689999999999854433221  12234789999997 5678999999999 899999999999987654 4799997


Q ss_pred             ec---c-cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          208 LA---A-LVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       208 ~a---a-~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      ..   . +.+   |--..++....|.|||||+++
T Consensus       434 SEwMG~fLl~---E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADN---ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGG---GCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccc---cCCHHHHHHHHHhcCCCcEEc
Confidence            43   2 222   222368889999999999864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.51  E-value=3.7e-07  Score=81.45  Aligned_cols=104  Identities=14%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~  202 (284)
                      ......++.+|||||||+ |.-+..|++  .+..+|+++|+|+.+++.+++.    +  ..+++++++|+.+++.+. ..
T Consensus        25 ~~~~~~~~~~VLDiG~G~-G~lt~~L~~--~~~~~v~avEid~~~~~~~~~~----~--~~~v~~i~~D~~~~~~~~~~~   95 (249)
T 3ftd_A           25 EELNIEEGNTVVEVGGGT-GNLTKVLLQ--HPLKKLYVIELDREMVENLKSI----G--DERLEVINEDASKFPFCSLGK   95 (249)
T ss_dssp             HHTTCCTTCEEEEEESCH-HHHHHHHTT--SCCSEEEEECCCHHHHHHHTTS----C--CTTEEEECSCTTTCCGGGSCS
T ss_pred             HhcCCCCcCEEEEEcCch-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHhc----c--CCCeEEEEcchhhCChhHccC
Confidence            344567889999999997 455566776  2358999999999999999986    2  258999999998765432 11


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhc--CCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYM--KDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l--~pGg~lv~r~  240 (284)
                      ...|+.+.-.    ..-..++.++.+..  -+.+++++..
T Consensus        96 ~~~vv~NlPy----~i~~~il~~ll~~~~~~~~~~~m~Qk  131 (249)
T 3ftd_A           96 ELKVVGNLPY----NVASLIIENTVYNKDCVPLAVFMVQK  131 (249)
T ss_dssp             SEEEEEECCT----TTHHHHHHHHHHTGGGCSEEEEEEEH
T ss_pred             CcEEEEECch----hccHHHHHHHHhcCCCCceEEEEEeH
Confidence            1233333211    12234555555443  3455665543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.41  E-value=8.2e-07  Score=87.73  Aligned_cols=115  Identities=11%  Similarity=0.055  Sum_probs=82.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcC-----------------CCcEEEEEeCChHHHHHHHHHHHhcCCCCC----C
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHL-----------------KSTHFDNFDIDEAANDVARQIVSSDIEFEK----R  185 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~-----------------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~  185 (284)
                      .+.++.+|+|.|||++++... ++++..                 ...+++|+|+|+.+++.|+.++.-.| ...    +
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi~-a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-i~~~~~~~  243 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLIE-ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHG  243 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHHH-HHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGT
T ss_pred             ccCCCCeEecCCcccchHHHH-HHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-CCcccccc
Confidence            446678999999999877543 333211                 12479999999999999999988777 443    3


Q ss_pred             eEEEEecccccc-ccCCCccEEEecccccCC-------------hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          186 MKFVTCDIMQVK-EKLGEYDCIFLAALVGMS-------------KEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       186 I~f~~~D~~~~~-~~~~~fD~V~~aa~v~~~-------------~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +++.++|....+ .....||+|+.+.-.+..             ......+++++.+.|+|||++++-.++|
T Consensus       244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            889999987543 234579999987532111             1112478999999999999988876554

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.39  E-value=5.6e-07  Score=81.81  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=52.2

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ......++.+|||||||++.+|. .|+++... +++|+++|+|+++++.+++..   .   .+++++++|+.+++.
T Consensus        36 ~~~~~~~~~~VLEIG~G~G~lt~-~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           36 AAIRPERGERMVEIGPGLGALTG-PVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHCCCTTCEEEEECCTTSTTHH-HHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCG
T ss_pred             HhcCCCCcCEEEEEccccHHHHH-HHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCCh
Confidence            34466788999999999876654 55552222 345999999999999999983   2   479999999988654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.18  E-value=1.1e-06  Score=72.69  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~  207 (284)
                      .++.+|++||||+++..|..||+  ..|..|+++|++|.|++                 |++.|+.+...+. ..||+|+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~--~~g~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRK--HSKVDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHH--HSCCEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHH--hCCCeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEE
Confidence            56789999999987678999986  37899999999998855                 8889997633332 4799997


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-..    +.+-...+-.+++.+  |+-++++.
T Consensus        95 sirP----P~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           95 SIRP----PAEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             EESC----CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             EcCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence            4432    244455666777654  56777765

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.18  E-value=7.1e-06  Score=81.13  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEeccccc--cc-cCCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQV--KE-KLGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~--~~-~~~~  202 (284)
                      .++.+|+|.+||++++... ++++.  ....+++|+|+++.++..|+.++.-.| +. +++.+.++|....  +. ....
T Consensus       220 ~~~~~VlDPaCGSG~fLi~-a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~gDtL~~d~p~~~~~~  297 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLN-AKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNADTLDEDWPTQEPTN  297 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGG-HHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCTTTSCSCCSSCCC
T ss_pred             CCCCEEeecccchhHHHHH-HHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEecceeccccccccccc
Confidence            5678999999999877533 33322  236789999999999999999988888 44 5789999998764  22 2357


Q ss_pred             ccEEEecccc--cCChHH--------------------HHHHHHHHHhhcC-CCcEEEEEecCc
Q 036061          203 YDCIFLAALV--GMSKEE--------------------KVKIIKHIRKYMK-DGGVLLVRSAKG  243 (284)
Q Consensus       203 fD~V~~aa~v--~~~~~~--------------------k~~il~~l~~~l~-pGg~lv~r~~~g  243 (284)
                      ||+|+.+.--  .+...+                    -..++.++.+.|+ |||++.+-.++|
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            9999977422  111000                    1248999999999 999988877655

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.13  E-value=3.3e-06  Score=78.76  Aligned_cols=81  Identities=15%  Similarity=0.032  Sum_probs=61.8

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cC-
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KL-  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~-  200 (284)
                      ...+.++..++|..+|.+|.|...+ ++..++++|+|+|+||+|++.|++    +.  .+++++++++..++..   .. 
T Consensus        52 ~L~i~pggiyVD~TlG~GGHS~~iL-~~lg~~GrVig~D~Dp~Al~~A~r----L~--~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           52 GLNIRPDGIYIDGTFGRGGHSRLIL-SQLGEEGRLLAIDRDPQAIAVAKT----ID--DPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             HTCCCTTCEEEESCCTTSHHHHHHH-TTCCTTCEEEEEESCHHHHHHHTT----CC--CTTEEEEESCGGGHHHHHHHTT
T ss_pred             hhCCCCCCEEEEeCcCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHh----hc--CCcEEEEeCCHHHHHHHHHhcC
Confidence            3456888999999999888776655 435678999999999999999953    22  3699999999887643   22 


Q ss_pred             -C-CccEEEecccc
Q 036061          201 -G-EYDCIFLAALV  212 (284)
Q Consensus       201 -~-~fD~V~~aa~v  212 (284)
                       . .+|.|+++-.|
T Consensus       125 ~~~~vDgILfDLGV  138 (347)
T 3tka_A          125 LIGKIDGILLDLGV  138 (347)
T ss_dssp             CTTCEEEEEEECSC
T ss_pred             CCCcccEEEECCcc
Confidence             2 58999877655

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.12  E-value=5.3e-06  Score=75.59  Aligned_cols=77  Identities=14%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----C
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----L  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----~  200 (284)
                      ..+.++..++|.+||.+|.|.. +++   .+++|+|+|+||+|++.|++ ++.     ++++|+++|..++...     .
T Consensus        18 L~~~~gg~~VD~T~G~GGHS~~-il~---~~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~~~g~   87 (285)
T 1wg8_A           18 LAVRPGGVYVDATLGGAGHARG-ILE---RGGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLAALGV   87 (285)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHH-HHH---TTCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHHHTTC
T ss_pred             hCCCCCCEEEEeCCCCcHHHHH-HHH---CCCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHHHcCC
Confidence            3567889999999998877755 555   27899999999999999998 533     4899999999886432     2


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      +.||.|+++-.|
T Consensus        88 ~~vDgIL~DLGv   99 (285)
T 1wg8_A           88 ERVDGILADLGV   99 (285)
T ss_dssp             SCEEEEEEECSC
T ss_pred             CCcCEEEeCCcc
Confidence            469999876544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.11  E-value=2.4e-06  Score=84.51  Aligned_cols=110  Identities=12%  Similarity=-0.006  Sum_probs=78.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhcC--------------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHL--------------KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~--------------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      .+|+|.+||++++-... +++..              ...+++|+|+|+.+++.|+.++.-.| +..++.+.++|....+
T Consensus       246 ~~VlDPaCGSG~fLi~a-~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~i~i~~gDtL~~~  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSS-DKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-IDFNFGKKNADSFLDD  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHH-HHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-CCCBCCSSSCCTTTSC
T ss_pred             CeEeCcccCcCcHHHHH-HHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-CCcccceeccchhcCc
Confidence            49999999998764332 22100              15689999999999999999998888 5666666899986544


Q ss_pred             cc-CCCccEEEecccccC---ChH-------------------------HHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          198 EK-LGEYDCIFLAALVGM---SKE-------------------------EKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       198 ~~-~~~fD~V~~aa~v~~---~~~-------------------------~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      .. ...||+|+.+.--+.   ..+                         .-..+++++.+.|+|||++++-.++|
T Consensus       324 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          324 QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            32 247999997753221   100                         01258999999999999987766544

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.98  E-value=3.9e-05  Score=71.03  Aligned_cols=101  Identities=15%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec---cccccc
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD---IMQVKE  198 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D---~~~~~~  198 (284)
                      +......++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|.  +  .++..+   ..++..
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~~Vi~~~~~~~~~~~a~~----lGa--~--~vi~~~~~~~~~~~~  233 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAK--AMGAAQVVVTDLSATRLSKAKE----IGA--D--LVLQISKESPQEIAR  233 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHH--HTTCSEEEEEESCHHHHHHHHH----TTC--S--EEEECSSCCHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----hCC--C--EEEcCcccccchHHH
Confidence            34446788999999999999999999999  3678 99999999998877754    563  2  222211   111110


Q ss_pred             ---c--CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ---K--LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ---~--~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         .  ...||+||-+...       ...++...+.|+|||++++-.
T Consensus       234 ~i~~~~~~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          234 KVEGQLGCKPEVTIECTGA-------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHTSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHhCCCCCEEEECCCC-------hHHHHHHHHHhcCCCEEEEEe
Confidence               0  1469999965442       235678889999999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.97  E-value=2.3e-05  Score=71.92  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=74.3

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccc-
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQV-  196 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~-  196 (284)
                      +..+......++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-..  |..+. 
T Consensus       156 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~~i~~~~~~~~~~~  226 (340)
T 3s2e_A          156 YKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR--AMGLRVAAVDIDDAKLNLARR----LGA---EVAVNARDTDPAAWL  226 (340)
T ss_dssp             HHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHH----cCC---CEEEeCCCcCHHHHH
Confidence            34455556789999999999999999999999  368999999999998887765    562   2222111  11111 


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+.+|+||.+...       ...++...+.|+|||++++-.
T Consensus       227 ~~~~g~~d~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          227 QKEIGGAHGVLVTAVS-------PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HHHHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             HHhCCCCCEEEEeCCC-------HHHHHHHHHHhccCCEEEEeC
Confidence            1111369999876542       246788889999999998754

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.97  E-value=1.8e-05  Score=81.32  Aligned_cols=113  Identities=9%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHH--HHHHHhcCCCC---CCeEEEEeccccccc-cC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVA--RQIVSSDIEFE---KRMKFVTCDIMQVKE-KL  200 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~A--r~~~~~~G~l~---~~I~f~~~D~~~~~~-~~  200 (284)
                      .++.+|+|.|||++++. +.++++..  ...+++|+|+|+.+++.|  +.++...+ +.   ....+...|..+... ..
T Consensus       320 ~~g~rVLDPaCGSG~FL-IaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~-LlhGi~~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLL-ATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ-LVSSNNAPTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CTTCEEEETTCTTSHHH-HHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT-TCBTTBCCEEECCCGGGCCGGGG
T ss_pred             CCCCEEEECCCCccHHH-HHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh-hhcCCCcceEEecchhccccccc
Confidence            46789999999987664 44554221  146899999999999999  55554322 11   224666677655321 23


Q ss_pred             CCccEEEecccc-c-CC-hHH-------------------------HHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          201 GEYDCIFLAALV-G-MS-KEE-------------------------KVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       201 ~~fD~V~~aa~v-~-~~-~~~-------------------------k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ..||+|+.+.-- . .. ...                         ...+++++.+.|+|||++.+-.++|
T Consensus       398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            579999987632 1 11 111                         2347889999999999998877654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.96  E-value=1.1e-05  Score=74.43  Aligned_cols=100  Identities=21%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      +..+.+....++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+  .|...+.  
T Consensus       166 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~v~--~~~~~~~--  232 (348)
T 3two_A          166 YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV--AMGAEVSVFARNEHKKQDALS----MGV---KHFY--TDPKQCK--  232 (348)
T ss_dssp             HHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH--HTTCEEEEECSSSTTHHHHHH----TTC---SEEE--SSGGGCC--
T ss_pred             HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHh----cCC---Ceec--CCHHHHh--
Confidence            34555667789999999999999999999999  468999999999998887765    663   2222  3432222  


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ..+|+||-+...  .     ..++...+.|+|||++++-.
T Consensus       233 -~~~D~vid~~g~--~-----~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          233 -EELDFIISTIPT--H-----YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             -SCEEEEEECCCS--C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             -cCCCEEEECCCc--H-----HHHHHHHHHHhcCCEEEEEC
Confidence             279999865432  1     24678888999999998864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.94  E-value=7.3e-06  Score=75.52  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE----eccccccccCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT----CDIMQVKEKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~----~D~~~~~~~~~~  202 (284)
                      .. ++++||.+|+|++|..++.+|+..++|++|+++|.+++..+.+++    +|.  +  .++.    .|..........
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~--~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA--D--YVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC--S--EEECHHHHHHHHHHHHTTCC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC--C--EEeccccchHHHHHhhcCCC
Confidence            56 899999999999999999999954448999999999998887765    462  2  1221    111111111226


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+||-+...       ...++...+.|+|||+++.-.
T Consensus       239 ~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          239 ASIAIDLVGT-------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             ccEEEECCCC-------hHHHHHHHHHhhcCCEEEEeC
Confidence            9999966442       235788889999999988754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.90  E-value=1e-05  Score=75.58  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-  199 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-  199 (284)
                      .+......++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|. ..-+.+...|..+.... 
T Consensus       174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR--LAGATTVILSTRQATKRRLAEE----VGA-TATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHH--HTTCSEEEEECSCHHHHHHHHH----HTC-SEEECTTSSCHHHHHHST
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC-CEEECCCCcCHHHHHHhh
Confidence            344557789999999999999999999999  4677 99999999998887766    562 21111112222211111 


Q ss_pred             ----CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 ----LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ----~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          .+.||+||-+...       ...++...+.|++||++++-.
T Consensus       247 ~~~~~gg~Dvvid~~G~-------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          247 VGLVPGGVDVVIECAGV-------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             TSSSTTCEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             hhccCCCCCEEEECCCC-------HHHHHHHHHHhccCCEEEEEe
Confidence                1369999965432       246788899999999998854

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.86  E-value=7.9e-05  Score=68.75  Aligned_cols=102  Identities=19%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---ccc-cccc
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIM-QVKE  198 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~-~~~~  198 (284)
                      +......++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-..   |.. .+..
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~~~~~~~~~~~~~~i~~  231 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAK--AYGAFVVCTARSPRRLEVAKN----CGA---DVTLVVDPAKEEESSIIE  231 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH----TTC---SEEEECCTTTSCHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHH----hCC---CEEEcCcccccHHHHHHH
Confidence            34446788999999999999999999999  368899999999998887764    562   2122111   111 1111


Q ss_pred             --c---CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 --K---LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 --~---~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        .   -..+|+||.+...       ...++...+.|+|||+++.-.
T Consensus       232 ~~~~~~g~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          232 RIRSAIGDLPNVTIDCSGN-------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHSSSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HhccccCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence              1   1369999966442       235678889999999998753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.82  E-value=4.5e-05  Score=70.63  Aligned_cols=104  Identities=23%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-----ecccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-----CDIMQ  195 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-----~D~~~  195 (284)
                      ++......++++||.+|+|++|..++.+|+  ..|++ |+++|.+++..+.++++ ..     .-+.+..     .|..+
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~~Vi~~~~~~~~~~~a~~l-~~-----~~~~~~~~~~~~~~~~~  242 (363)
T 3m6i_A          171 GLQRAGVRLGDPVLICGAGPIGLITMLCAK--AAGACPLVITDIDEGRLKFAKEI-CP-----EVVTHKVERLSAEESAK  242 (363)
T ss_dssp             HHHHHTCCTTCCEEEECCSHHHHHHHHHHH--HTTCCSEEEEESCHHHHHHHHHH-CT-----TCEEEECCSCCHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHHh-ch-----hcccccccccchHHHHH
Confidence            344556789999999999999999999999  46887 99999999999999986 21     1233321     11111


Q ss_pred             cc-c--cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VK-E--KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~-~--~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .. .  .-..+|+||-+..-       ...++...+.|++||++++-.
T Consensus       243 ~v~~~t~g~g~Dvvid~~g~-------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          243 KIVESFGGIEPAVALECTGV-------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHTSSCCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHhCCCCCCEEEECCCC-------hHHHHHHHHHhcCCCEEEEEc
Confidence            11 1  12369999965442       235678889999999998754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.82  E-value=8.7e-06  Score=75.25  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE---ecccccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT---CDIMQVK  197 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~---~D~~~~~  197 (284)
                      ++......++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|.   . .++.   .|..+..
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~-~vi~~~~~~~~~~v  227 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGAN--HLGAGRIFAVGSRKHCCDIALE----YGA---T-DIINYKNGDIVEQI  227 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSSEEEECCCHHHHHHHHH----HTC---C-EEECGGGSCHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hCC---c-eEEcCCCcCHHHHH
Confidence            444556789999999999999999999999  4687 89999999998887766    462   1 2221   1211111


Q ss_pred             c---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 E---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .   .-..||+||-+...       ...++...+.|+|||++++-.
T Consensus       228 ~~~t~g~g~D~v~d~~g~-------~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          228 LKATDGKGVDKVVIAGGD-------VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             HHHTTTCCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHcCCCCCCEEEECCCC-------hHHHHHHHHHHhcCCEEEEec
Confidence            1   11269999865432       136788889999999998754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.80  E-value=4.4e-05  Score=72.06  Aligned_cols=88  Identities=11%  Similarity=0.171  Sum_probs=60.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +.++++|+|+||+|+|.|-. +++   .|++|++||+.+=.    .. +...    .+|+++.+|+.+.....+.||+|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~-l~~---rg~~V~aVD~~~l~----~~-l~~~----~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQ-LVK---RNMWVYSVDNGPMA----QS-LMDT----GQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHH-HHH---TTCEEEEECSSCCC----HH-HHTT----TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHH-HHH---CCCEEEEEEhhhcC----hh-hccC----CCeEEEeCccccccCCCCCcCEEE
Confidence            47899999999999999865 556   58999999986421    11 1222    479999999988766556799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCC
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDG  233 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pG  233 (284)
                      .+-..     ...++++.+.+.+..|
T Consensus       276 sDm~~-----~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          276 CDMVE-----KPAKVAALMAQWLVNG  296 (375)
T ss_dssp             ECCSS-----CHHHHHHHHHHHHHTT
T ss_pred             EcCCC-----ChHHhHHHHHHHHhcc
Confidence            76432     2234444444444444

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.78  E-value=2.4e-05  Score=71.93  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc--cccc
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM--QVKE  198 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~--~~~~  198 (284)
                      ..+.+....++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  +  .++  |..  ++..
T Consensus       155 ~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----lGa--~--~~~--d~~~~~~~~  222 (339)
T 1rjw_A          155 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAK--AMGLNVVAVDIGDEKLELAKE----LGA--D--LVV--NPLKEDAAK  222 (339)
T ss_dssp             HHHHHHTCCTTCEEEEECCSTTHHHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TTC--S--EEE--CTTTSCHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----CCC--C--EEe--cCCCccHHH
Confidence            3444556788999999999999999999998  368999999999998887754    562  1  111  221  1110


Q ss_pred             c----CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 K----LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~----~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .    .+.+|+||.+...       ...++...+.|++||+++.-.
T Consensus       223 ~~~~~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          223 FMKEKVGGVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             HHHHHHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHhCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEec
Confidence            0    1469999866542       135788889999999988754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.78  E-value=1.6e-05  Score=73.97  Aligned_cols=102  Identities=20%  Similarity=0.128  Sum_probs=70.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc-cCC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE-KLG  201 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~-~~~  201 (284)
                      .....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|. ..-+.....|..+ +.. ..+
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~~~g  257 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKV--CGASIIIAVDIVESRLELAKQ----LGA-THVINSKTQDPVAAIKEITDG  257 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHH----HTC-SEEEETTTSCHHHHHHHHTTS
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCC-CEEecCCccCHHHHHHHhcCC
Confidence            4456889999999999999999999993  577 79999999999888765    452 1111111112111 111 112


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+||-+...       ...++...+.|++||++++-.
T Consensus       258 g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          258 GVNFALESTGS-------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             CEEEEEECSCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEECCCC-------HHHHHHHHHHHhcCCEEEEeC
Confidence            69999865442       246788899999999998754

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.77  E-value=0.0002  Score=64.38  Aligned_cols=140  Identities=13%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             CcccccccCCCcchhhhhhHHH-HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhh------cCCCcEEEEEe-----CC
Q 036061           98 QPLNNLNLFPYYGNYVKLANLE-YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKN------HLKSTHFDNFD-----ID  165 (284)
Q Consensus        98 ~p~~~L~~fpy~~ny~~l~~~E-~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~------~~~g~~V~~iD-----id  165 (284)
                      .|...|..|+.|..-..+++.- ...|.+....-|..|++.|+-- |-|++.+|+.      ..++-+|.++|     ..
T Consensus        36 ~~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~~vpG~ivE~GV~r-G~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~  114 (257)
T 3tos_A           36 PTEELVNNLPLFLRRHQMTDLLSMDALYRQVLDVPGVIMEFGVRF-GRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPD  114 (257)
T ss_dssp             CGGGGGGCGGGGCCHHHHHHHHHHHHHHHHTTTSCSEEEEECCTT-CHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCS
T ss_pred             ChHHHHHhHHhhhhHHHHHHHHHHHHHHHHhhCCCCeEEEEeccc-CHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCC
Confidence            3445567788776555555441 1122333446788999999975 6788887752      13568899999     33


Q ss_pred             hH----------------------HHHHH---HHHHHhcCCCCCCeEEEEecccccccc------CCCccEEEecccccC
Q 036061          166 EA----------------------ANDVA---RQIVSSDIEFEKRMKFVTCDIMQVKEK------LGEYDCIFLAALVGM  214 (284)
Q Consensus       166 ~~----------------------ai~~A---r~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~fD~V~~aa~v~~  214 (284)
                      +.                      .++..   +++.++.|...++|+++.|++.+....      ...||+|++++..  
T Consensus       115 ~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--  192 (257)
T 3tos_A          115 VNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--  192 (257)
T ss_dssp             CCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--
T ss_pred             CccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--
Confidence            21                      12211   122235774468999999999876543      2359999999853  


Q ss_pred             ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          215 SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       215 ~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                       -+.....++.+..+|+|||++++.+.
T Consensus       193 -Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          193 -YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             -cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence             35667889999999999999999885

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.75  E-value=2.8e-05  Score=72.70  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=72.0

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      ..+.+....++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  +  .++..+-.+.....
T Consensus       185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~Vi~~~~~~~~~~~a~~----lGa--~--~vi~~~~~~~~~~~  254 (369)
T 1uuf_A          185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH--AMGAHVVAFTTSEAKREAAKA----LGA--D--EVVNSRNADEMAAH  254 (369)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSGGGHHHHHH----HTC--S--EEEETTCHHHHHTT
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC--c--EEeccccHHHHHHh
Confidence            4455556789999999999999999999999  368999999999999888765    562  2  12211111111111


Q ss_pred             -CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 -GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 -~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       +.+|+||.+....       ..++...+.|+|||+++.-.
T Consensus       255 ~~g~Dvvid~~g~~-------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          255 LKSFDFILNTVAAP-------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TTCEEEEEECCSSC-------CCHHHHHTTEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCH-------HHHHHHHHHhccCCEEEEec
Confidence             4799998654421       13567788999999988754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.70  E-value=3.3e-05  Score=72.64  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-cc-cc-
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQ-VK-  197 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~-~~-  197 (284)
                      .+......++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +-+.+...|. .+ +. 
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARL--LGAACVIVGDQNPERLKLLSD----AGF--ETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHT----TTC--EEEETTSSSCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cCC--cEEcCCCcchHHHHHHH
Confidence            3444567889999999999999999999993  577 99999999998877654    562  2111111121 11 10 


Q ss_pred             -ccCCCccEEEecccccCC---h----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 -EKLGEYDCIFLAALVGMS---K----EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v~~~---~----~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ..-..||+||-+......   .    .+....++...+.|++||++++-.
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence             011269999865432100   0    001236788899999999987643

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.69  E-value=3.2e-05  Score=70.07  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      +....++.+|||+||||+|.|-....+  .+-..|+++|+.-+.....+.. ...|   .++.+..+++.........||
T Consensus        69 k~~l~~~~~VLDLGaAPGGWSQvAa~~--~~~~~v~g~dVGvDl~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           69 RGYVKLEGRVIDLGCGRGGWCYYAAAQ--KEVSGVKGFTLGRDGHEKPMNV-QSLG---WNIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             TTSSCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTCCCCCCC-CBTT---GGGEEEECSCCTTTSCCCCCS
T ss_pred             hCCCCCCCEEEEecCCCCHHHHHHHHh--cCCCcceeEEEeccCccccccc-CcCC---CCeEEEeccceehhcCCCCcc
Confidence            344578889999999999988554332  2334788899884431000000 0112   134444554322222234799


Q ss_pred             EEEecccc--cCChHHH---HHHHHHHHhhcCCC-cEEEEEecC
Q 036061          205 CIFLAALV--GMSKEEK---VKIIKHIRKYMKDG-GVLLVRSAK  242 (284)
Q Consensus       205 ~V~~aa~v--~~~~~~k---~~il~~l~~~l~pG-g~lv~r~~~  242 (284)
                      +|+.+...  |...-+-   ..+++.+.+.|+|| |.|++--..
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99976422  2211111   24578889999999 999997655

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.69  E-value=4.3e-05  Score=71.74  Aligned_cols=111  Identities=15%  Similarity=0.113  Sum_probs=72.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-ccc-ccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-IMQ-VKE  198 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-~~~-~~~  198 (284)
                      .+.+....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +-+.+...| ..+ +..
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~~i~~~~~~~~~~~v~~  248 (398)
T 1kol_A          177 GAVTAGVGPGSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDLNPARLAHAKA----QGF--EIADLSLDTPLHEQIAA  248 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TTC--EEEETTSSSCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCcHHHHHHHHHHHH--CCCCeEEEEcCCHHHHHHHHH----cCC--cEEccCCcchHHHHHHH
Confidence            3444567889999999999999999999993  577 79999999999888765    562  211111111 111 111


Q ss_pred             --cCCCccEEEeccccc--------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 --KLGEYDCIFLAALVG--------MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 --~~~~fD~V~~aa~v~--------~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ....+|+||-+....        +..+.+...++...+.|++||++++-.
T Consensus       249 ~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          249 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence              113699998654321        001122346788899999999998753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.69  E-value=7.8e-05  Score=68.51  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=73.6

Q ss_pred             HHHHHhc--CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccc
Q 036061          120 YRILDEN--GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQ  195 (284)
Q Consensus       120 ~~~l~~~--~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~  195 (284)
                      +..+.+.  ...++++||.+|+|++|..++.+|+. ..+++|+++|.+++..+.+++    +|.  +.  ++..  |..+
T Consensus       159 ~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~-~g~~~Vi~~~~~~~~~~~~~~----lGa--~~--~i~~~~~~~~  229 (345)
T 3jv7_A          159 YHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRA-VSAARVIAVDLDDDRLALARE----VGA--DA--AVKSGAGAAD  229 (345)
T ss_dssp             HHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESCHHHHHHHHH----TTC--SE--EEECSTTHHH
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----cCC--CE--EEcCCCcHHH
Confidence            3444453  56889999999999999999999983 447899999999999887765    563  21  2211  1111


Q ss_pred             ccc---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKE---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...   .-..+|+||-+..-       ...++...+.|++||++++-.
T Consensus       230 ~v~~~t~g~g~d~v~d~~G~-------~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          230 AIRELTGGQGATAVFDFVGA-------QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             HHHHHHGGGCEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHhCCCCCeEEEECCCC-------HHHHHHHHHHHhcCCEEEEEC
Confidence            100   11269999865442       236788899999999998765

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.62  E-value=3.2e-05  Score=71.75  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             HHHHhcCCC-CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          121 RILDENGVV-NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       121 ~~l~~~~~~-~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      ..+.+.... ++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.+++   ++|.  +.+ +-..|...+...
T Consensus       170 ~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~~~~~~~~~~~~---~lGa--~~v-i~~~~~~~~~~~  241 (357)
T 2cf5_A          170 SPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSNKKREEALQ---DLGA--DDY-VIGSDQAKMSEL  241 (357)
T ss_dssp             HHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSTTHHHHHHT---TSCC--SCE-EETTCHHHHHHS
T ss_pred             HHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH---HcCC--cee-eccccHHHHHHh
Confidence            344455666 89999999999999999999993  68899999999988777663   5673  222 211121111111


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+|+||-+....       ..++...+.|+|||+++.-.
T Consensus       242 ~~g~D~vid~~g~~-------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          242 ADSLDYVIDTVPVH-------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TTTEEEEEECCCSC-------CCSHHHHTTEEEEEEEEECS
T ss_pred             cCCCCEEEECCCCh-------HHHHHHHHHhccCCEEEEeC
Confidence            24699998654321       12456778999999998754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.60  E-value=6.2e-05  Score=70.07  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             HHHHhcCCC-CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          121 RILDENGVV-NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       121 ~~l~~~~~~-~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      ..+.+.+.. ++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++   ++|.   ...+-..|...+...
T Consensus       177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~--~~Ga~Vi~~~~~~~~~~~~~~---~lGa---~~v~~~~~~~~~~~~  248 (366)
T 1yqd_A          177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK--AFGSKVTVISTSPSKKEEALK---NFGA---DSFLVSRDQEQMQAA  248 (366)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHH---TSCC---SEEEETTCHHHHHHT
T ss_pred             HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH---hcCC---ceEEeccCHHHHHHh
Confidence            345555666 8999999999999999999998  368999999999988777653   5663   211211111111111


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+|+||.+....       ..++...+.|++||+++.-.
T Consensus       249 ~~~~D~vid~~g~~-------~~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          249 AGTLDGIIDTVSAV-------HPLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             TTCEEEEEECCSSC-------CCSHHHHHHEEEEEEEEECC
T ss_pred             hCCCCEEEECCCcH-------HHHHHHHHHHhcCCEEEEEc
Confidence            24699998654421       12356677899999988754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.59  E-value=3.2e-05  Score=72.44  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             HHHhcC-CCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe------cc
Q 036061          122 ILDENG-VVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC------DI  193 (284)
Q Consensus       122 ~l~~~~-~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~------D~  193 (284)
                      .+.+.. ..++++||.+|+|++|..++.+|+  ..| ++|+++|.+++..+.+++    +|.  +  .++..      |.
T Consensus       186 al~~~~~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~~Vi~~~~~~~~~~~~~~----lGa--~--~vi~~~~~~~~~~  255 (380)
T 1vj0_A          186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIAR--SLGAENVIVIAGSPNRLKLAEE----IGA--D--LTLNRRETSVEER  255 (380)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHH--HTTBSEEEEEESCHHHHHHHHH----TTC--S--EEEETTTSCHHHH
T ss_pred             HHHhcCCCCCCCEEEEECcCHHHHHHHHHHH--HcCCceEEEEcCCHHHHHHHHH----cCC--c--EEEeccccCcchH
Confidence            344456 778999999999999999999999  368 599999999998887764    562  2  22221      11


Q ss_pred             cc-ccc--cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQ-VKE--KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~-~~~--~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+ +..  .-..+|+||-+...       ...++...+.|++||++++-.
T Consensus       256 ~~~v~~~~~g~g~Dvvid~~g~-------~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          256 RKAIMDITHGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHHHHHHTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhCCCCCcEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence            11 111  11269999965442       135678889999999998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.59  E-value=0.00019  Score=66.73  Aligned_cols=100  Identities=17%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----cccccccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEK  199 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~  199 (284)
                      .....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  + -.+-..    |..+....
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~-~vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKA--AGASRIIGVGTHKDKFPKAIE----LGA--T-ECLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----TTC--S-EEECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCC--c-EEEecccccchHHHHHHH
Confidence            3456889999999999999999999993  577 89999999998887764    562  2 112111    11111111


Q ss_pred             --CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 --LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 --~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                        .+.+|+||-+...       ...++...+.|++| |+++.-.
T Consensus       257 ~t~gg~Dvvid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          257 KTNGGVDYAVECAGR-------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HTTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCCCEEEECCCC-------HHHHHHHHHHHhcCCCEEEEEc
Confidence              1369999965432       24578888999999 9988754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.58  E-value=0.00012  Score=67.02  Aligned_cols=107  Identities=12%  Similarity=0.099  Sum_probs=73.0

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--  198 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--  198 (284)
                      ..+......++++||.+|+|++|..++.+|+ ...|++|+++|.+++..+.+++    +|. ..-+.....|..+...  
T Consensus       154 ~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~-~~~g~~Vi~~~~~~~r~~~~~~----~Ga-~~~i~~~~~~~~~~v~~~  227 (348)
T 4eez_A          154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAK-NVFGAKVIAVDINQDKLNLAKK----IGA-DVTINSGDVNPVDEIKKI  227 (348)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTSCCEEEEEESCHHHHHHHHH----TTC-SEEEEC-CCCHHHHHHHH
T ss_pred             eeecccCCCCCCEEEEEcCCCccHHHHHHHH-HhCCCEEEEEECcHHHhhhhhh----cCC-eEEEeCCCCCHHHHhhhh
Confidence            3445556789999999999998888888887 4678999999999998776665    552 2222232333222111  


Q ss_pred             -cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 -KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .-..+|.++.++.-       ...+....+.+++||++++-.
T Consensus       228 t~g~g~d~~~~~~~~-------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          228 TGGLGVQSAIVCAVA-------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             TTSSCEEEEEECCSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCceEEEEeccC-------cchhheeheeecCCceEEEEe
Confidence             11257888766542       245678888999999988754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.57  E-value=0.00014  Score=67.87  Aligned_cols=100  Identities=20%  Similarity=0.148  Sum_probs=70.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----ccccccc-
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKE-  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~-  198 (284)
                      .....++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.|+    ++|.   ...+-..    |..+... 
T Consensus       188 ~~~~~~g~~VlV~GaG~vG~~a~q~a~--~~Ga~~Vi~~~~~~~~~~~a~----~lGa---~~vi~~~~~~~~~~~~i~~  258 (378)
T 3uko_A          188 TAKVEPGSNVAIFGLGTVGLAVAEGAK--TAGASRIIGIDIDSKKYETAK----KFGV---NEFVNPKDHDKPIQEVIVD  258 (378)
T ss_dssp             TTCCCTTCCEEEECCSHHHHHHHHHHH--HHTCSCEEEECSCTTHHHHHH----TTTC---CEEECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHH----HcCC---cEEEccccCchhHHHHHHH
Confidence            345688999999999999999999999  3577 8999999999988775    4663   2111111    1111111 


Q ss_pred             -cCCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          199 -KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                       ..+.+|+||-+...       ...++...+.+++| |++++-.
T Consensus       259 ~~~gg~D~vid~~g~-------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          259 LTDGGVDYSFECIGN-------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             HTTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             hcCCCCCEEEECCCC-------HHHHHHHHHHhhccCCEEEEEc
Confidence             11369999965442       24678889999997 9988754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.57  E-value=8.2e-05  Score=70.14  Aligned_cols=102  Identities=13%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE---eccccccc---c
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT---CDIMQVKE---K  199 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~---~D~~~~~~---~  199 (284)
                      ...++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.+++    +|.   . .++.   .|..+...   .
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak--~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~-~vi~~~~~~~~~~i~~~t~  279 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILK--HAGASKVILSEPSEVRRNLAKE----LGA---D-HVIDPTKENFVEAVLDYTN  279 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHH--HTTCSEEEEECSCHHHHHHHHH----HTC---S-EEECTTTSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC---C-EEEcCCCCCHHHHHHHHhC
Confidence            4688999999999999999999999  3678 99999999999888875    452   1 1221   12111111   1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -..+|+||-+...  .......+++.+++.+++||++++-.
T Consensus       280 g~g~D~vid~~g~--~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          280 GLGAKLFLEATGV--PQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             TCCCSEEEECSSC--HHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCCCCEEEECCCC--cHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            1369999965432  10122334444445559999998854

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.57  E-value=7.5e-05  Score=69.35  Aligned_cols=97  Identities=16%  Similarity=0.009  Sum_probs=69.8

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------c
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------K  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~  199 (284)
                      ....++++||.+|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   . .++..+..++..      .
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~-~vi~~~~~~~~~~v~~~~~  254 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAK--ATGAEVIVTSSSREKLDRAFA----LGA---D-HGINRLEEDWVERVYALTG  254 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH----HTC---S-EEEETTTSCHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEecCchhHHHHHH----cCC---C-EEEcCCcccHHHHHHHHhC
Confidence            45688999999999999999999999  478999999999998888765    562   2 122222111111      1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||-+.. +       ..++...+.|+|||++++-.
T Consensus       255 g~g~D~vid~~g-~-------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          255 DRGADHILEIAG-G-------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             TCCEEEEEEETT-S-------SCHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEECCC-h-------HHHHHHHHHhhcCCEEEEEe
Confidence            236999986543 1       24677888999999998865

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.56  E-value=0.00024  Score=66.06  Aligned_cols=99  Identities=18%  Similarity=0.098  Sum_probs=69.4

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----cccccccc-
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEK-  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~-  199 (284)
                      ....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  + -.+-..    |..+.... 
T Consensus       191 ~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~-~vi~~~~~~~~~~~~v~~~  261 (376)
T 1e3i_A          191 AKVTPGSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDINGEKFPKAKA----LGA--T-DCLNPRELDKPVQDVITEL  261 (376)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--S-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCC--c-EEEccccccchHHHHHHHH
Confidence            456889999999999999999999993  678 89999999998887754    562  1 111111    11111100 


Q ss_pred             -CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 -LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 -~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                       .+.+|+||-+...       ...++...+.|++| |++++-.
T Consensus       262 ~~~g~Dvvid~~G~-------~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          262 TAGGVDYSLDCAGT-------AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HTSCBSEEEESSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             hCCCccEEEECCCC-------HHHHHHHHHHhhcCCCEEEEEC
Confidence             1369999965442       24578888999999 9988754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.54  E-value=0.00027  Score=65.64  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----cccccccc-
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEK-  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~-  199 (284)
                      ....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +. .+-..    |..+.... 
T Consensus       188 ~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~~~~~~~~  258 (374)
T 1cdo_A          188 AKVEPGSTCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLNPDKFEKAKV----FGA--TD-FVNPNDHSEPISQVLSKM  258 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--CE-EECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hCC--ce-EEeccccchhHHHHHHHH
Confidence            456889999999999999999999993  677 89999999999887764    562  21 11111    11111100 


Q ss_pred             -CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 -LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 -~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                       .+.+|+||-+...       ...++...+.|++| |++++-.
T Consensus       259 ~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          259 TNGGVDFSLECVGN-------VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             hCCCCCEEEECCCC-------HHHHHHHHHHhhcCCcEEEEEc
Confidence             1369999865442       23578889999999 9988754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.53  E-value=0.0004  Score=55.67  Aligned_cols=96  Identities=10%  Similarity=-0.003  Sum_probs=66.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--c--cCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--E--KLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~--~~~~fD~V  206 (284)
                      ..+|+.+|+|.+|.......+  ..|..|+++|.|++.++.+++    .|     +.++.+|+.+..  .  ...++|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~--~~g~~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLL--ASDIPLVVIETSRTRVDELRE----RG-----VRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH----TT-----CEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----cC-----CCEEECCCCCHHHHHhcCcccCCEE
Confidence            468999999987776443333  368999999999999877664    34     578889987532  1  23468998


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++..-    ......+-...+.+.|+..++.|..
T Consensus        76 i~~~~~----~~~n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           76 ILTIPN----GYEAGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EECCSC----HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             EEECCC----hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            865331    2233334456677889999998874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.52  E-value=0.00024  Score=64.66  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             HHHHhcCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc
Q 036061          121 RILDENGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE  198 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~  198 (284)
                      ..+......++++||.+| +|++|..++.+|+  ..|++|++++ +++..+.    ++++|. .   .++..+-.+ +..
T Consensus       143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~--~~Ga~vi~~~-~~~~~~~----~~~lGa-~---~~i~~~~~~~~~~  211 (321)
T 3tqh_A          143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK--QKGTTVITTA-SKRNHAF----LKALGA-E---QCINYHEEDFLLA  211 (321)
T ss_dssp             HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEE-CHHHHHH----HHHHTC-S---EEEETTTSCHHHH
T ss_pred             HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH--HcCCEEEEEe-ccchHHH----HHHcCC-C---EEEeCCCcchhhh
Confidence            344455678999999997 9999999999999  4689999998 4444444    445673 2   122222122 233


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|+||-+..-        ..++...+.|++||+++.-.
T Consensus       212 ~~~g~D~v~d~~g~--------~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          212 ISTPVDAVIDLVGG--------DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CCSCEEEEEESSCH--------HHHHHHGGGEEEEEEEEECC
T ss_pred             hccCCCEEEECCCc--------HHHHHHHHhccCCCEEEEeC
Confidence            34579999865431        12378889999999998753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.52  E-value=0.00013  Score=67.87  Aligned_cols=95  Identities=11%  Similarity=0.077  Sum_probs=67.2

Q ss_pred             CCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-eccccccc--cCCCccE
Q 036061          130 NPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDIMQVKE--KLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~--~~~~fD~  205 (284)
                      ++++||.+| +|++|..++.+|+ +..|++|+++|.+++..+.+++    +|.  +. .+-. .|..+...  ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak-~~~g~~Vi~~~~~~~~~~~~~~----lGa--d~-vi~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIAR-QRTDLTVIATASRPETQEWVKS----LGA--HH-VIDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHH----TTC--SE-EECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHHHH----cCC--CE-EEeCCCCHHHHHHHhcCCCceE
Confidence            788999999 9999999999998 3368999999999998888765    562  21 1111 11111111  1236999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||-+...       ...++...+.|++||++++-
T Consensus       243 vid~~g~-------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTHT-------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSCH-------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCc-------hhhHHHHHHHhcCCCEEEEE
Confidence            9865432       24678889999999999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.51  E-value=4.1e-05  Score=72.08  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=68.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++|+.+|+|.+|..+..+++  ..|++|+++|++++..+.+++   ..|.   .+.....+..++.....++|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~--~~Ga~V~~~d~~~~~l~~~~~---~~g~---~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIAN--GMGATVTVLDINIDKLRQLDA---EFCG---RIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HTTT---SSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHH---hcCC---eeEeccCCHHHHHHHHcCCCEEEE
Confidence            46799999999999998888887  478899999999998877665   2342   232222222222222346899998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..+... +.+.-+.+...+.|+|||+++.-.
T Consensus       238 ~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCC-CCcceecHHHHhcCCCCcEEEEEe
Confidence            6654321 111112456778899999987655

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.50  E-value=0.00035  Score=64.94  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----cccccccc-
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEK-  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~-  199 (284)
                      ....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  + -.+-..    |..+.... 
T Consensus       187 ~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~-~vi~~~~~~~~~~~~~~~~  257 (374)
T 2jhf_A          187 AKVTQGSTCAVFGLGGVGLSVIMGCKA--AGAARIIGVDINKDKFAKAKE----VGA--T-ECVNPQDYKKPIQEVLTEM  257 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--S-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCC--c-eEecccccchhHHHHHHHH
Confidence            456889999999999999999999993  677 89999999999887754    562  1 111111    11111111 


Q ss_pred             -CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 -LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 -~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                       .+.+|+||-+...       ...++...+.|++| |++++-.
T Consensus       258 ~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          258 SNGGVDFSFEVIGR-------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             TTSCBSEEEECSCC-------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             hCCCCcEEEECCCC-------HHHHHHHHHHhhcCCcEEEEec
Confidence             1369999865442       23567888999999 9988754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.49  E-value=6.5e-05  Score=63.33  Aligned_cols=98  Identities=10%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--ccc-ccc--cC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQ-VKE--KL  200 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~-~~~--~~  200 (284)
                      ...++++||.+| +|.+|..+..+++  ..|++|+++|.+++..+.+++    +|.   ...+-..+  ..+ +..  ..
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~--~~G~~V~~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAK--MIGARIYTTAGSDAKREMLSR----LGV---EYVGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHT----TCC---SEEEETTCSTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC---CEEeeCCcHHHHHHHHHHhCC
Confidence            467889999999 6778888888887  368999999999988766643    562   22221111  111 111  11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..+|+|+.++.     .   ..++...+.|+|||+++.-..
T Consensus       106 ~~~D~vi~~~g-----~---~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          106 YGVDVVLNSLA-----G---EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             CCEEEEEECCC-----T---HHHHHHHHTEEEEEEEEECSC
T ss_pred             CCCeEEEECCc-----h---HHHHHHHHHhccCCEEEEEcC
Confidence            35999986543     1   357888999999999987653

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.48  E-value=5.6e-05  Score=68.65  Aligned_cols=112  Identities=9%  Similarity=0.097  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCCC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLGE  202 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~  202 (284)
                      .++...++.+|||+||||+|.+-....+  .+-..|+|+|+..++-..+.. ....|.  +-+.+... |+.++.  ...
T Consensus        84 eK~~Lk~~~~VLDLGaAPGGWsQvAa~~--~gv~sV~GvdvG~d~~~~pi~-~~~~g~--~ii~~~~~~dv~~l~--~~~  156 (282)
T 3gcz_A           84 ERGYVKPTGIVVDLGCGRGGWSYYAASL--KNVKKVMAFTLGVQGHEKPIM-RTTLGW--NLIRFKDKTDVFNME--VIP  156 (282)
T ss_dssp             HTTSCCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCC-CCBTTG--GGEEEECSCCGGGSC--CCC
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHh--cCCCeeeeEEeccCccccccc-cccCCC--ceEEeeCCcchhhcC--CCC
Confidence            3456688889999999999998655433  344579999998653222211 011221  22334333 444332  357


Q ss_pred             ccEEEecccc--cCChHHH---HHHHHHHHhhcCCC--cEEEEEecC
Q 036061          203 YDCIFLAALV--GMSKEEK---VKIIKHIRKYMKDG--GVLLVRSAK  242 (284)
Q Consensus       203 fD~V~~aa~v--~~~~~~k---~~il~~l~~~l~pG--g~lv~r~~~  242 (284)
                      +|+|+.+..-  |...-+-   ..+++-..+.|+||  |.|++--..
T Consensus       157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            9999966432  2211121   24577778999999  999998766

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.47  E-value=5.5e-05  Score=69.74  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=70.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---cccccc
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQVK  197 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~~~  197 (284)
                      .+.+... ++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +  .++..   |..+..
T Consensus       160 ~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~----~Ga--~--~~~~~~~~~~~~~v  228 (348)
T 2d8a_A          160 TVLAGPI-SGKSVLITGAGPLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKK----VGA--D--YVINPFEEDVVKEV  228 (348)
T ss_dssp             HHTTSCC-TTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH----HTC--S--EEECTTTSCHHHHH
T ss_pred             HHHhcCC-CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCC--C--EEECCCCcCHHHHH
Confidence            3444456 88999999999999999999983  688 99999999998887765    452  1  11111   111111


Q ss_pred             c---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 E---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .   .-..+|+||.+...       ...++...+.|++||+++.-.
T Consensus       229 ~~~~~g~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          229 MDITDGNGVDVFLEFSGA-------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHHTTTSCEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHcCCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence            1   11269999866442       245788889999999988754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.47  E-value=9e-05  Score=67.77  Aligned_cols=101  Identities=11%  Similarity=-0.012  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--cccccc--
Q 036061          124 DENGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQVKE--  198 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~~~~--  198 (284)
                      ......++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+.+   ++|.   ...+-..|  ..+...  
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~---~~g~---~~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIAR--LKGCRVVGIAGGAEKCRFLVE---ELGF---DGAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH---TTCC---SEEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH---HcCC---CEEEECCCHHHHHHHHHh
Confidence            3446789999999998 889999999998  478999999999988777632   5562   21221111  111000  


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.+|+||.++..        ..++...+.|++||++++-.
T Consensus       215 ~~~~~d~vi~~~g~--------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          215 CPKGIDVFFDNVGG--------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CTTCEEEEEESSCH--------HHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEECCCc--------chHHHHHHHHhhCCEEEEEe
Confidence            11369999865441        36788999999999998754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.47  E-value=8e-05  Score=68.94  Aligned_cols=94  Identities=13%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             CEEEEeccCCChhHH-HHHH-hhcCCCcE-EEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          132 KKVAFVGSGPMPLTS-IVMA-KNHLKSTH-FDNFDIDEA---ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA-~~~~~g~~-V~~iDid~~---ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ++||.+|+|++|..+ +.+| +  ..|++ |+++|.+++   ..+.+++    +|.  +.+.+...|..++....+.||+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k--~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa--~~v~~~~~~~~~i~~~~gg~Dv  245 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVD--DKGYENLYCLGRRDRPDPTIDIIEE----LDA--TYVDSRQTPVEDVPDVYEQMDF  245 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHC--TTCCCEEEEEECCCSSCHHHHHHHH----TTC--EEEETTTSCGGGHHHHSCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHH--HcCCcEEEEEeCCcccHHHHHHHHH----cCC--cccCCCccCHHHHHHhCCCCCE
Confidence            999999999999999 9999 8  46887 999999988   7777654    662  2221111121111100126999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||-+...       ...++...+.|++||+++.-.
T Consensus       246 vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          246 IYEATGF-------PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             EEECSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence            9865442       135778889999999988754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.47  E-value=1.9e-05  Score=73.24  Aligned_cols=106  Identities=22%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-cccc
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-QVKE  198 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-~~~~  198 (284)
                      +..+.+....++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  +  .++..+-. ++..
T Consensus       169 ~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~--~v~~~~~~~~~~~  238 (360)
T 1piw_A          169 YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMK----MGA--D--HYIATLEEGDWGE  238 (360)
T ss_dssp             HHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HTC--S--EEEEGGGTSCHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cCC--C--EEEcCcCchHHHH
Confidence            344455567889999999999999999999993  68899999999998887765    562  2  12221111 1111


Q ss_pred             cC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .. +.||+||.+.... +    ...++...+.|++||+++.-.
T Consensus       239 ~~~~~~D~vid~~g~~-~----~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          239 KYFDTFDLIVVCASSL-T----DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             HSCSCEEEEEECCSCS-T----TCCTTTGGGGEEEEEEEEECC
T ss_pred             HhhcCCCEEEECCCCC-c----HHHHHHHHHHhcCCCEEEEec
Confidence            11 4799998654320 0    123567788999999988754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.47  E-value=0.00078  Score=61.53  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cc
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KE  198 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~  198 (284)
                      +......++++||..|+|++|..++.+|++  .|+ .++++|.+++..+.|++    +|. ..-+.+...|..+.   ..
T Consensus       153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~--~G~~~vi~~~~~~~k~~~a~~----lGa-~~~i~~~~~~~~~~~~~~~  225 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDISSEKLALAKS----FGA-MQTFNSSEMSAPQMQSVLR  225 (346)
T ss_dssp             HHHTTCCTTSEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TTC-SEEEETTTSCHHHHHHHHG
T ss_pred             HHHhccCCCCEEEEECCCCcchHHHHHHHH--cCCcEEEEEechHHHHHHHHH----cCC-eEEEeCCCCCHHHHHHhhc
Confidence            344567899999999999999999999993  454 57899999998887765    562 21111111222111   11


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|+|+.+...       ...++...+.+++||.+++-.
T Consensus       226 ~~~g~d~v~d~~G~-------~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          226 ELRFNQLILETAGV-------PQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             GGCSSEEEEECSCS-------HHHHHHHHHHCCTTCEEEECC
T ss_pred             ccCCcccccccccc-------cchhhhhhheecCCeEEEEEe
Confidence            23468998865442       245678888999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.46  E-value=0.00011  Score=66.57  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      .++......++++||.+|+|++|..++.+|+.  .|++|+++| +++..+.+++    +|.  +  .++ .|..++   .
T Consensus       133 ~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~-~~~~~~~~~~----lGa--~--~v~-~d~~~v---~  197 (315)
T 3goh_A          133 QAFEKIPLTKQREVLIVGFGAVNNLLTQMLNN--AGYVVDLVS-ASLSQALAAK----RGV--R--HLY-REPSQV---T  197 (315)
T ss_dssp             HHHTTSCCCSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEC-SSCCHHHHHH----HTE--E--EEE-SSGGGC---C
T ss_pred             HHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEE-ChhhHHHHHH----cCC--C--EEE-cCHHHh---C
Confidence            34444567899999999999999999999993  688999999 9988887765    562  1  122 242222   3


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||-+..-        ..+....+.|+|||+++.-.
T Consensus       198 ~g~Dvv~d~~g~--------~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          198 QKYFAIFDAVNS--------QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             SCEEEEECC---------------TTGGGEEEEEEEEEEC
T ss_pred             CCccEEEECCCc--------hhHHHHHHHhcCCCEEEEEe
Confidence            479999855331        12256788999999988763

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.45  E-value=0.00015  Score=67.41  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccc--cCC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKE--KLG  201 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~--~~~  201 (284)
                      ...++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+-.  .|..+...  ...
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~~~~~~~~  230 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKK--AKCHVIGTCSSDEKSAFLKS----LGC---DRPINYKTEPVGTVLKQEYPE  230 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHCTT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHH----cCC---cEEEecCChhHHHHHHHhcCC
Confidence            568899999999 79999999999983  68999999999988887765    562   211211  11111111  113


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+||.++.     .   ..++...+.|++||++++-.
T Consensus       231 g~D~vid~~g-----~---~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          231 GVDVVYESVG-----G---AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             CEEEEEECSC-----T---HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCC-----H---HHHHHHHHHHhcCCEEEEEe
Confidence            6999986543     1   36788899999999988754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00021  Score=65.81  Aligned_cols=101  Identities=16%  Similarity=0.189  Sum_probs=71.0

Q ss_pred             HHHHhcCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc---cc
Q 036061          121 RILDENGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM---QV  196 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~---~~  196 (284)
                      .++.+....++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+   |..   ++
T Consensus       160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~--~~Ga~V~~~~~~~~~~~~~~~----~g~---~~~~---d~~~~~~~  227 (347)
T 2hcy_A          160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAK--AMGYRVLGIDGGEGKEELFRS----IGG---EVFI---DFTKEKDI  227 (347)
T ss_dssp             HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHH--HTTCEEEEEECSTTHHHHHHH----TTC---CEEE---ETTTCSCH
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHHHH--HCCCcEEEEcCCHHHHHHHHH----cCC---ceEE---ecCccHhH
Confidence            4455556788999999999 788888888888  368999999999988776654    562   2222   322   11


Q ss_pred             c---cc--CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 K---EK--LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~---~~--~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .   ..  .+.+|+||.++..       ...++...+.|++||+++.-.
T Consensus       228 ~~~~~~~~~~~~D~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          228 VGAVLKATDGGAHGVINVSVS-------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHHHHHHHTSCEEEEEECSSC-------HHHHHHHTTSEEEEEEEEECC
T ss_pred             HHHHHHHhCCCCCEEEECCCc-------HHHHHHHHHHHhcCCEEEEEe
Confidence            1   10  1269999866542       246788999999999998754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.43  E-value=0.0003  Score=65.23  Aligned_cols=99  Identities=20%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----cccccccc-
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEK-  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~-  199 (284)
                      ....++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +. .+-..    |..+.... 
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~avqla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~~~~v~~~  256 (373)
T 2fzw_A          186 AKLEPGSVCAVFGLGGVGLAVIMGCKV--AGASRIIGVDINKDKFARAKE----FGA--TE-CINPQDFSKPIQEVLIEM  256 (373)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----HTC--SE-EECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCC--ce-EeccccccccHHHHHHHH
Confidence            456889999999999999999999993  577 89999999999888765    462  11 11111    11111111 


Q ss_pred             -CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 -LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 -~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                       .+.+|+||-+...       ...++...+.|++| |++++-.
T Consensus       257 ~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          257 TDGGVDYSFECIGN-------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             TTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             hCCCCCEEEECCCc-------HHHHHHHHHhhccCCcEEEEEe
Confidence             1369999865442       23578888999999 9988754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.39  E-value=0.0012  Score=59.52  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC-------------CCeEEE
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIEFE-------------KRMKFV  189 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~l~-------------~~I~f~  189 (284)
                      -++|..||+|.+|.+ |..+++   .|.+|+.+|++++.++.+++.++       +.|.+.             .++++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            368999999988763 445555   68899999999999988765433       234211             134442


Q ss_pred             EeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       190 ~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                       .|..   ....+.|+|+.+..  .+...|..+++++.+.++||.+++.
T Consensus        92 -~~~~---~~~~~aD~Vi~avp--~~~~~~~~v~~~l~~~~~~~~iv~s  134 (302)
T 1f0y_A           92 -TDAA---SVVHSTDLVVEAIV--ENLKVKNELFKRLDKFAAEHTIFAS  134 (302)
T ss_dssp             -SCHH---HHTTSCSEEEECCC--SCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             -cCHH---HhhcCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence             3332   23457899998643  2335578899999999999887653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.39  E-value=0.00076  Score=56.06  Aligned_cols=96  Identities=13%  Similarity=0.106  Sum_probs=62.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cc--cCCCc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KE--KLGEY  203 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~--~~~~f  203 (284)
                      .+++|+.+|+|.+|.......+  .. |.+|+++|.|++.++.+++    .|     +.++.+|..+.   ..  ...++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~--~~~g~~V~vid~~~~~~~~~~~----~g-----~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELR--ARYGKISLGIEIREEAAQQHRS----EG-----RNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHH--HHHCSCEEEEESCHHHHHHHHH----TT-----CCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHH--hccCCeEEEEECCHHHHHHHHH----CC-----CCEEEcCCCCHHHHHhccCCCCC
Confidence            3569999999987766443333  25 7899999999988766543    34     35667777542   11  24579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+.+..-    .+....+-...+.+.|++.++.+.
T Consensus       107 d~vi~~~~~----~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMPH----HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCSS----HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeCCC----hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999875331    222223334566778888888876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.39  E-value=0.00048  Score=62.42  Aligned_cols=48  Identities=13%  Similarity=0.030  Sum_probs=42.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI  180 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G  180 (284)
                      .++..|||++||+ |.+++..++   .|.+++|+|+|+++++.|+++++...
T Consensus       234 ~~~~~vlD~f~Gs-Gt~~~~a~~---~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGT-GTTLIAAAR---WGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            6788999999996 778887776   78999999999999999999998764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.38  E-value=0.0001  Score=67.43  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------c
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------K  199 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~  199 (284)
                      ...++++||.+| +|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+ ..+-.++..      .
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~-~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLK--MKGAHTIAVASTDEKLKIAKE----YGA---EYLI-NASKEDILRQVLKFTN  214 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----TTC---SEEE-ETTTSCHHHHHHHHTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC---cEEE-eCCCchHHHHHHHHhC
Confidence            468899999999 8999999999998  478999999999998887765    552   2222 111111111      1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||.++..        ..++...+.|++||+++.-.
T Consensus       215 ~~g~D~vid~~g~--------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          215 GKGVDASFDSVGK--------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             TSCEEEEEECCGG--------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCh--------HHHHHHHHHhccCCEEEEEc
Confidence            2369999865442        35678889999999998854

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.37  E-value=5.5e-05  Score=71.66  Aligned_cols=100  Identities=16%  Similarity=0.260  Sum_probs=68.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec----------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD----------------  192 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D----------------  192 (284)
                      .++.+|+.||.|.+|..+..+++  ..|++|+.+|++++..+.+++    +|.     +|...+                
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~--~lGa~V~v~D~~~~~l~~~~~----lGa-----~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAK--RLGAKTTGYDVRPEVAEQVRS----VGA-----QWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHH--HHTCEEEEECSSGGGHHHHHH----TTC-----EECCCC-------------CHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccchhhhhHH
Confidence            47899999999999999998888  468999999999998887765    342     222110                


Q ss_pred             -----cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 -----IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 -----~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                           ..++.....+.|+|+.+.++.....++ -+-+++.+.||||++++--.
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~-Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAPR-LVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCC-CBCHHHHHTSCTTCEEEETT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccce-eecHHHHhcCCCCcEEEEEe
Confidence                 111223346799999776552111111 13468888999999887654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.37  E-value=0.00018  Score=64.85  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-ccccccCCCccE
Q 036061          128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~~~~fD~  205 (284)
                      ..++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  +  ..+..+- .++....+.+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~ga--~--~~~~~~~~~~~~~~~~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVAR--AMGLRVLAAASRPEKLALPLA----LGA--E--EAATYAEVPERAKAWGGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHH--HTTCEEEEEESSGGGSHHHHH----TTC--S--EEEEGGGHHHHHHHTTSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHh----cCC--C--EEEECCcchhHHHHhcCceE
Confidence            678999999998 889999999998  368999999999998877754    562  2  1221111 122222357999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||. ..  .      ..++...+.|++||+++.-.
T Consensus       193 vid-~g--~------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          193 VLE-VR--G------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEE-CS--C------TTHHHHHTTEEEEEEEEEC-
T ss_pred             EEE-CC--H------HHHHHHHHhhccCCEEEEEe
Confidence            986 33  1      25678889999999988743

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.36  E-value=0.0012  Score=61.01  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=72.0

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC---------CCeEEEEec
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE---------KRMKFVTCD  192 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~---------~~I~f~~~D  192 (284)
                      ...+|..||+|.+|-. |..+|.   .|..|+.+|+++++++.+++.+++       .|.+.         .+|++. .|
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~   80 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS---GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN   80 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence            4579999999987754 333444   799999999999999988877653       22111         234442 23


Q ss_pred             cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .   .......|+|+-+.  ..+.+-|.++++++-++++|+.+|...+
T Consensus        81 l---~~a~~~ad~ViEav--~E~l~iK~~lf~~l~~~~~~~aIlaSNT  123 (319)
T 3ado_A           81 L---AEAVEGVVHIQECV--PENLDLKRKIFAQLDSIVDDRVVLSSSS  123 (319)
T ss_dssp             H---HHHTTTEEEEEECC--CSCHHHHHHHHHHHHTTCCSSSEEEECC
T ss_pred             h---HhHhccCcEEeecc--ccHHHHHHHHHHHHHHHhhhcceeehhh
Confidence            2   22356789998653  3456889999999999999999987766

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.36  E-value=0.00028  Score=64.86  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             HHHHhcCCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---
Q 036061          121 RILDENGVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---  196 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---  196 (284)
                      ..+.+....++++||.+|+| ++|..++.+|+. ..|++|+++|.+++..+.+++    +|.   ...+...| .+.   
T Consensus       161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~-~~Ga~Vi~~~~~~~~~~~~~~----~g~---~~~~~~~~-~~~~~~  231 (347)
T 1jvb_A          161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKR----AGA---DYVINASM-QDPLAE  231 (347)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHH----HTC---SEEEETTT-SCHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----hCC---CEEecCCC-ccHHHH
Confidence            34445567889999999999 888888888883 228999999999998887765    452   22221111 111   


Q ss_pred             -cccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 -KEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 -~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ....  +.+|+||.++..       ...++...+.|+|||++++-.
T Consensus       232 ~~~~~~~~~~d~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          232 IRRITESKGVDAVIDLNNS-------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HHHHTTTSCEEEEEESCCC-------HHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHHhcCCCceEEEECCCC-------HHHHHHHHHHHhcCCEEEEEC
Confidence             1111  469999866542       236788889999999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.35  E-value=7.6e-05  Score=71.20  Aligned_cols=101  Identities=21%  Similarity=0.283  Sum_probs=69.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec----------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD----------------  192 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D----------------  192 (284)
                      .++.+|+.||+|++|..+..+++  ..|++|+.+|++++..+.+++    +|.     +|+..+                
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~--~lGa~V~v~D~~~~~l~~~~~----~G~-----~~~~~~~~~~~d~~~~~~ya~e  256 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATAR--RLGAVVSATDVRPAAKEQVAS----LGA-----KFIAVEDEEFKAAETAGGYAKE  256 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSTTHHHHHHH----TTC-----EECCCCC---------------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHHHH----cCC-----ceeecccccccccccccchhhh
Confidence            46799999999999999999988  478999999999998877765    341     121110                


Q ss_pred             ---------cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          193 ---------IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       193 ---------~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                               ...+.....+.|+||.+.++.....++ -+-+++.+.||||++++--+.
T Consensus       257 ~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~-Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          257 MSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPR-LVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             --CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCC-CBCHHHHTTSCTTCEEEETTG
T ss_pred             cchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCE-EecHHHHhcCCCCCEEEEEeC
Confidence                     001112235789999876652211221 134688899999999876553

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.33  E-value=0.00038  Score=63.13  Aligned_cols=90  Identities=10%  Similarity=0.099  Sum_probs=64.5

Q ss_pred             EEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCccEEEec
Q 036061          133 KVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYDCIFLA  209 (284)
Q Consensus       133 ~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD~V~~a  209 (284)
                      +||..|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   .-.+-..|... ...  .+.+|+||-+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~vi~~~~~~~-~~~~~~~~~d~v~d~  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLH--KLGYQVAAVSGRESTHGYLKS----LGA---NRILSRDEFAE-SRPLEKQLWAGAIDT  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHH--HTTCCEEEEESCGGGHHHHHH----HTC---SEEEEGGGSSC-CCSSCCCCEEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----cCC---CEEEecCCHHH-HHhhcCCCccEEEEC
Confidence            4999998 999999999999  468999999999999888876    562   21221112111 111  1369998854


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..     .   ..++...+.|+|||+++.-.
T Consensus       219 ~g-----~---~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          219 VG-----D---KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             SC-----H---HHHHHHHHTEEEEEEEEECC
T ss_pred             CC-----c---HHHHHHHHHHhcCCEEEEEe
Confidence            33     2   27889999999999998754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.32  E-value=8.2e-05  Score=67.88  Aligned_cols=97  Identities=8%  Similarity=-0.056  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--ccccc-c--cC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQVK-E--KL  200 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~~~-~--~~  200 (284)
                      ...++++||.+| +|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-..+  ..+.. .  ..
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAK--ALGAKLIGTVSSPEKAAHAKA----LGA---WETIDYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC---CEEEeCCCccHHHHHHHHhCC
Confidence            468899999999 8999999999998  368999999999999888765    452   22221111  11100 0  11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||.++..        ..++...+.|++||++++-.
T Consensus       208 ~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ--------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG--------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh--------HHHHHHHHHhcCCCEEEEEe
Confidence            369999865442        35678889999999998865

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.27  E-value=0.00041  Score=63.48  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=68.8

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---cccccccc--
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQVKEK--  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~~~~~--  199 (284)
                      ....++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+++   ++|.   ...+-..   |..+....  
T Consensus       151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~--~~G~~V~~~~~~~~~~~~~~~---~~g~---~~~~d~~~~~~~~~~~~~~~  222 (345)
T 2j3h_A          151 CSPKEGETVYVSAASGAVGQLVGQLAK--MMGCYVVGSAGSKEKVDLLKT---KFGF---DDAFNYKEESDLTAALKRCF  222 (345)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH---TSCC---SEEEETTSCSCSHHHHHHHC
T ss_pred             hCCCCCCEEEEECCCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH---HcCC---ceEEecCCHHHHHHHHHHHh
Confidence            45688999999996 889999999988  368999999999988877763   4562   2222111   11110100  


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+|+||.++.     .   ..++...+.|++||++++-.
T Consensus       223 ~~~~d~vi~~~g-----~---~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 PNGIDIYFENVG-----G---KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             TTCEEEEEESSC-----H---HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCcEEEECCC-----H---HHHHHHHHHHhcCCEEEEEc
Confidence            136999986644     1   26788899999999998753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.26  E-value=0.00087  Score=61.05  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=67.5

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---ccc--
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEK--  199 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~--  199 (284)
                      ....++++||..|+ |++|..++.+++  ..|++|+++|.+++..+.++    ++|.   ...+-..|..++   ...  
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~--~~G~~V~~~~~~~~~~~~~~----~~g~---~~~~d~~~~~~~~~~~~~~~  211 (333)
T 1v3u_A          141 CGVKGGETVLVSAAAGAVGSVVGQIAK--LKGCKVVGAAGSDEKIAYLK----QIGF---DAAFNYKTVNSLEEALKKAS  211 (333)
T ss_dssp             SCCCSSCEEEEESTTBHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHH----HTTC---SEEEETTSCSCHHHHHHHHC
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----hcCC---cEEEecCCHHHHHHHHHHHh
Confidence            35688999999997 888988888887  47899999999998887774    3462   222211110111   100  


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+|+|+.++..        ..++...+.|++||++++-.
T Consensus       212 ~~~~d~vi~~~g~--------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 PDGYDCYFDNVGG--------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             TTCEEEEEESSCH--------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCeEEEECCCh--------HHHHHHHHHHhcCCEEEEEe
Confidence            1469999866541        24788889999999998754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.25  E-value=0.00014  Score=66.90  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             hcCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----
Q 036061          125 ENGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----  198 (284)
                      .....++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  +.  ++..+ .++..     
T Consensus       154 ~~~~~~g~~VlV~Gasg~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~ga--~~--v~~~~-~~~~~~v~~~  222 (342)
T 4eye_A          154 RGQLRAGETVLVLGAAGGIGTAAIQIAK--GMGAKVIAVVNRTAATEFVKS----VGA--DI--VLPLE-EGWAKAVREA  222 (342)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESSGGGHHHHHH----HTC--SE--EEESS-TTHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----cCC--cE--EecCc-hhHHHHHHHH
Confidence            345688999999998 999999999998  468999999999998887776    462  21  22222 11111     


Q ss_pred             -cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 -KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ....+|+||-++..        ..++...+.|++||++++-.
T Consensus       223 ~~~~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGG--------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC----------CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCch--------hHHHHHHHhhcCCCEEEEEE
Confidence             11269999865542        25678889999999998754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.25  E-value=0.00027  Score=65.06  Aligned_cols=94  Identities=10%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             CCCEEEEe-ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-Eecccccc-c-cCCCccE
Q 036061          130 NPKKVAFV-GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV-TCDIMQVK-E-KLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~I-GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~-~-~~~~fD~  205 (284)
                      ++++||.+ |+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  +.+ +- ..|..+.. . ....+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~--~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~v-i~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAK--AYGLRVITTASRNETIEWTKK----MGA--DIV-LNHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH--HTTCEEEEECCSHHHHHHHHH----HTC--SEE-ECTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----cCC--cEE-EECCccHHHHHHHhCCCCccE
Confidence            78999999 79999999999999  478999999999998888776    452  111 10 01111111 1 1236999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||-+...       ...++...+.|++||+++.-
T Consensus       221 v~d~~g~-------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFNT-------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSCH-------HHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCCc-------hHHHHHHHHHhccCCEEEEE
Confidence            9865432       24567888999999999764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.24  E-value=0.00011  Score=67.53  Aligned_cols=99  Identities=6%  Similarity=-0.070  Sum_probs=67.3

Q ss_pred             hcCCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ecccccc-c--
Q 036061          125 ENGVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVK-E--  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~-~--  198 (284)
                      .....++++||.+|+| ++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-.  .|..+.. .  
T Consensus       139 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----lga---~~~~~~~~~~~~~~~~~~~  209 (340)
T 3gms_A          139 TLNLQRNDVLLVNACGSAIGHLFAQLSQ--ILNFRLIAVTRNNKHTEELLR----LGA---AYVIDTSTAPLYETVMELT  209 (340)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHH--HHTCEEEEEESSSTTHHHHHH----HTC---SEEEETTTSCHHHHHHHHT
T ss_pred             hcccCCCCEEEEeCCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----CCC---cEEEeCCcccHHHHHHHHh
Confidence            3456889999999997 88999999998  468999999999998888876    452   212211  1111100 0  


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-..+|+||-++..    .    ......+.|++||+++.-.
T Consensus       210 ~~~g~Dvvid~~g~----~----~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          210 NGIGADAAIDSIGG----P----DGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             TTSCEEEEEESSCH----H----HHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCC----h----hHHHHHHHhcCCCEEEEEe
Confidence            11369999976542    1    1234458999999998864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.24  E-value=0.00019  Score=66.40  Aligned_cols=97  Identities=10%  Similarity=0.037  Sum_probs=68.8

Q ss_pred             cCCCCCCEEEEe-ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----c
Q 036061          126 NGVVNPKKVAFV-GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----K  199 (284)
Q Consensus       126 ~~~~~~~~VL~I-GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~  199 (284)
                      ....++++||.+ |+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+ ..+-.++..     .
T Consensus       163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~~~-~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          163 AGLTEGESVLIHGGTSGIGTTAIQLAR--AFGAEVYATAGSTGKCEACER----LGA---KRGI-NYRSEDFAAVIKAET  232 (353)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----HTC---SEEE-ETTTSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----cCC---CEEE-eCCchHHHHHHHHHh
Confidence            356889999999 67999999999998  468999999999999888776    452   1112 111111111     1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||.++..        ..++...+.|++||+++.-.
T Consensus       233 ~~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          233 GQGVDIILDMIGA--------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SSCEEEEEESCCG--------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCCH--------HHHHHHHHHhccCCEEEEEE
Confidence            2369999866542        15677888999999988754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.22  E-value=0.0002  Score=65.80  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLG  201 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~  201 (284)
                      .... ++++||.+|+|++|..++.+|+  ..|+ +|+++|.+++..+.++++ ...-     +.....|..+...  ...
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~--~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v-----~~~~~~~~~~~~~~~~~~  230 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVR--ASGAGPILVSDPNPYRLAFARPY-ADRL-----VNPLEEDLLEVVRRVTGS  230 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHH--HTTCCSEEEECSCHHHHGGGTTT-CSEE-----ECTTTSCHHHHHHHHHSS
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHHh-HHhc-----cCcCccCHHHHHHHhcCC
Confidence            4456 8999999999999999999999  3688 899999999988877764 2110     0000011111110  123


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+|+||.+...       ...++...+.|++||+++.-.
T Consensus       231 g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          231 GVEVLLEFSGN-------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             CEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence            69999865442       235678889999999988754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.20  E-value=0.0017  Score=59.38  Aligned_cols=91  Identities=18%  Similarity=0.134  Sum_probs=62.6

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKST--HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++|.+||+|.+|.+ +..|++   .|.  +|+++|.+++.++.+++    .|. .+  + ...|..+.  ...+.|+||
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~---~G~~~~V~~~dr~~~~~~~a~~----~G~-~~--~-~~~~~~~~--~~~~aDvVi   99 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR---SGFKGKIYGYDINPESISKAVD----LGI-ID--E-GTTSIAKV--EDFSPDFVM   99 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH---TTCCSEEEEECSCHHHHHHHHH----TTS-CS--E-EESCTTGG--GGGCCSEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH----CCC-cc--h-hcCCHHHH--hhccCCEEE
Confidence            379999999988765 233444   566  99999999998877653    562 21  1 22333220  234689999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ++.-.    ....++++++.+.++||.+++-
T Consensus       100 lavp~----~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          100 LSSPV----RTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ECSCG----GGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EeCCH----HHHHHHHHHHhhccCCCcEEEE
Confidence            87554    4567899999999999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.18  E-value=0.00023  Score=66.47  Aligned_cols=103  Identities=19%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++++|+.+|+|..|..++.+++  ..|++|+.+|++++..+.+++....      .+.....+..++.....++|+|+.+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~--~~Ga~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAV--GLGAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence            4589999999999998888887  4678999999999988887765422      2222222222222223479999977


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..++....++ -+.+...+.|+|||+++.-..
T Consensus       238 ~~~~~~~~~~-li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          238 VLVPGRRAPI-LVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCTTSSCCC-CBCHHHHTTSCTTCEEEETTC
T ss_pred             CCcCCCCCCe-ecCHHHHhhCCCCCEEEEEec
Confidence            6653211110 023456678999998876553

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.18  E-value=0.00029  Score=64.86  Aligned_cols=98  Identities=10%  Similarity=0.042  Sum_probs=67.7

Q ss_pred             hcCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccC
Q 036061          125 ENGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKL  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~  200 (284)
                      .....++++||.+| +|++|..++.+|+  ..|++|+++ .+++..+.+++    +|. .. +. ...|..+..   ..-
T Consensus       145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~--~~Ga~Vi~~-~~~~~~~~~~~----lGa-~~-i~-~~~~~~~~~~~~~~~  214 (343)
T 3gaz_A          145 RAQVQDGQTVLIQGGGGGVGHVAIQIAL--ARGARVFAT-ARGSDLEYVRD----LGA-TP-ID-ASREPEDYAAEHTAG  214 (343)
T ss_dssp             TTCCCTTCEEEEETTTSHHHHHHHHHHH--HTTCEEEEE-ECHHHHHHHHH----HTS-EE-EE-TTSCHHHHHHHHHTT
T ss_pred             hcCCCCCCEEEEecCCCHHHHHHHHHHH--HCCCEEEEE-eCHHHHHHHHH----cCC-CE-ec-cCCCHHHHHHHHhcC
Confidence            34568899999999 7999999999998  478999999 88888776654    563 21 22 111111111   011


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||-+..     .   ..++...+.|++||++++-.
T Consensus       215 ~g~D~vid~~g-----~---~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          215 QGFDLVYDTLG-----G---PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             SCEEEEEESSC-----T---HHHHHHHHHEEEEEEEEESC
T ss_pred             CCceEEEECCC-----c---HHHHHHHHHHhcCCeEEEEc
Confidence            36999986543     1   36788889999999998743

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.17  E-value=0.00029  Score=65.96  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -++++|+.+|+|.+|..+..+++  ..|++|+++|++++..+.+++   ..|.   .+.....+..++......+|+|+.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~--~~Ga~V~~~d~~~~~~~~~~~---~~g~---~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIAL--GMGAQVTILDVNHKRLQYLDD---VFGG---RVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HTTT---SEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHH---hcCc---eEEEecCCHHHHHHHHhCCCEEEE
Confidence            35699999999999988887777  478999999999988766654   3452   333332232222222346899987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++..... ....-+.+...+.|++||+++.-.
T Consensus       236 ~~g~~~~-~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          236 AVLVPGA-KAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CCC--------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCCcc-ccchhHHHHHHHhhcCCCEEEEEe
Confidence            7654210 111113567788999999887655

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.16  E-value=0.0024  Score=57.20  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------C-CCC--------CCeEEEEeccc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------I-EFE--------KRMKFVTCDIM  194 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G-~l~--------~~I~f~~~D~~  194 (284)
                      ++|..||+|.+|..- ..+++   .|.+|+.+|++++.++.+++.+.+.       | .+.        .++++ +.|..
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAF---HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            689999999887653 23344   6899999999999999888764321       1 011        12343 23332


Q ss_pred             cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +   ...+.|+|+.+..  .+.+.|..+++++.+.++||.+++-.
T Consensus        81 ~---~~~~aDlVi~av~--~~~~~~~~v~~~l~~~~~~~~il~s~  120 (283)
T 4e12_A           81 Q---AVKDADLVIEAVP--ESLDLKRDIYTKLGELAPAKTIFATN  120 (283)
T ss_dssp             H---HTTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             H---HhccCCEEEEecc--CcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence            2   2457899997643  23468899999999999999887643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.15  E-value=0.00032  Score=64.38  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccc-ccc--cC
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQ-VKE--KL  200 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~-~~~--~~  200 (284)
                      ...++++||.+|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.  + ..+-..  |..+ +..  ..
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~--~~G~~Vi~~~~~~~~~~~~~~----~ga--~-~~~d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAK--LFGARVIATAGSEDKLRRAKA----LGA--D-ETVNYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----HTC--S-EEEETTSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHh----cCC--C-EEEcCCcccHHHHHHHHhCC
Confidence            5678899999999 899999999998  368999999999998888764    452  2 111111  1111 111  11


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||.++. +       ..++...+.|++||+++.-.
T Consensus       234 ~~~d~vi~~~g-~-------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-A-------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-S-------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCC-H-------HHHHHHHHhhccCCEEEEEe
Confidence            36999986654 2       24677888999999988754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.15  E-value=0.0047  Score=59.75  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=67.7

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHH---hcCCCC--------CCeEEEEeccccc
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVS---SDIEFE--------KRMKFVTCDIMQV  196 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~---~~G~l~--------~~I~f~~~D~~~~  196 (284)
                      +-++|.+||+|.+|.+ |..+++   .|..|+.+|++++. .+..++.++   +.|.+.        +++++. .|.   
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl---  125 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGL---AGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF---  125 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG---
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH---
Confidence            3479999999988765 445555   78999999999982 111222221   233111        356653 332   


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ....+.|+||.+..  .+..-|..+++++.+.++||.+|+..+
T Consensus       126 -~al~~aDlVIeAVp--e~~~vk~~v~~~l~~~~~~~aIlasnT  166 (460)
T 3k6j_A          126 -HKLSNCDLIVESVI--EDMKLKKELFANLENICKSTCIFGTNT  166 (460)
T ss_dssp             -GGCTTCSEEEECCC--SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             -HHHccCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCCEEEecC
Confidence             24567899998754  244678999999999999999887544

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.13  E-value=0.002  Score=62.66  Aligned_cols=100  Identities=24%  Similarity=0.219  Sum_probs=70.4

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEeccc
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCDIM  194 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D~~  194 (284)
                      -++|.+||+|.+|.+ |..+++   .|..|+.+|+++++++.+++.+++       .|.+.        .++++. .|..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS---HGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIH   80 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHH
Confidence            358999999988765 445555   688999999999999998875432       22111        145542 3321


Q ss_pred             cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ...+.|+||.+..  .+..-|..+++++.+.++||.+|+..+
T Consensus        81 ----~~~~aDlVIeAVp--e~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           81 ----ALAAADLVIEAAS--ERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             ----GGGGCSEEEECCC--CCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ----HhcCCCEEEEcCC--CcHHHHHHHHHHHHHhhccCcEEEecC
Confidence                3456899998643  244678899999999999999886533

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.10  E-value=0.00031  Score=63.92  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=65.4

Q ss_pred             cCCCCCC-EEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-cccccc--C
Q 036061          126 NGVVNPK-KVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEK--L  200 (284)
Q Consensus       126 ~~~~~~~-~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~--~  200 (284)
                      ....+++ +||.+|+ |++|..++.+|++  .|++|+++|.+++..+.+++    +|.  +. .+-..+. .+....  .
T Consensus       144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lGa--~~-~i~~~~~~~~~~~~~~~  214 (328)
T 1xa0_A          144 HGLTPERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRV----LGA--KE-VLAREDVMAERIRPLDK  214 (328)
T ss_dssp             TTCCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHH----TTC--SE-EEECC---------CCS
T ss_pred             cCCCCCCceEEEecCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHH----cCC--cE-EEecCCcHHHHHHHhcC
Confidence            3456665 8999997 9999999999983  68999999999988877754    562  21 1111111 111111  1


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+|+||-+..-        ..++...+.+++||++++-.
T Consensus       215 ~~~d~vid~~g~--------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          215 QRWAAAVDPVGG--------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             CCEEEEEECSTT--------TTHHHHHHTEEEEEEEEECS
T ss_pred             CcccEEEECCcH--------HHHHHHHHhhccCCEEEEEe
Confidence            369999865431        14678888999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.10  E-value=0.0032  Score=49.88  Aligned_cols=95  Identities=11%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V  206 (284)
                      .++|+.+|+|.+|........  ..|.+|+.+|.|++.++.+++    .|     +.++.+|+.+...    ...++|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~--~~g~~V~~id~~~~~~~~~~~----~~-----~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELT--AAGKKVLAVDKSKEKIELLED----EG-----FDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH----TT-----CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH----CC-----CcEEECCCCCHHHHHhCCcccCCEE
Confidence            468999999977765433322  268999999999998776654    23     5788899876321    23578999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.+..   + .+....+-...+.+. ...++.+..
T Consensus        75 i~~~~---~-~~~n~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           75 LITGS---D-DEFNLKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             EECCS---C-HHHHHHHHHHHHHHC-CCCEEEEES
T ss_pred             EEecC---C-HHHHHHHHHHHHHhC-CceEEEEEc
Confidence            86543   2 233334445556666 677777764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.10  E-value=0.0069  Score=55.39  Aligned_cols=106  Identities=14%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +..+|..||+|.+|.+............+|+.+|++++..+ .+..+.+....+...+++..++.    ..+.+.|+|++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~----~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH----HHhCCCCEEEE
Confidence            45799999999888775554432233458999999998555 35666665432323566665432    34567899998


Q ss_pred             cccccCCh------------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSK------------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~------------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.++...            +-+.++.+.+.++ .|++.+++-+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~t  123 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT  123 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeC
Confidence            87553221            3466777777777 5888877743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.10  E-value=0.00049  Score=62.81  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=67.9

Q ss_pred             cCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccc-cc--cc
Q 036061          126 NGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQ-VK--EK  199 (284)
Q Consensus       126 ~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~-~~--~~  199 (284)
                      ....++++||..| +|++|..++.+++  ..|++|+++|.+++..+.+++    +|.   ...+-..  |..+ +.  ..
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~--~~G~~Vi~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~i~~~~~  211 (333)
T 1wly_A          141 HKVKPGDYVLIHAAAGGMGHIMVPWAR--HLGATVIGTVSTEEKAETARK----LGC---HHTINYSTQDFAEVVREITG  211 (333)
T ss_dssp             SCCCTTCEEEETTTTSTTHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECCccHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC---CEEEECCCHHHHHHHHHHhC
Confidence            3567899999999 4899999999988  368999999999988887765    452   2112111  1110 00  01


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||.++..        ..++...+.|++||+++.-.
T Consensus       212 ~~~~d~vi~~~g~--------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          212 GKGVDVVYDSIGK--------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TCCEEEEEECSCT--------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCeEEEECCcH--------HHHHHHHHhhccCCEEEEEe
Confidence            1369999866541        35678889999999988754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.08  E-value=0.0016  Score=61.97  Aligned_cols=100  Identities=14%  Similarity=-0.003  Sum_probs=69.3

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-----------
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-----------  193 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-----------  193 (284)
                      ....++++||..|+ |++|..++.+|+  ..|++|++++.+++..+.+++    +|. ..-+.....|.           
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~--~~Ga~vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~~~~~~~~~~~~~  288 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVK--NGGGIPVAVVSSAQKEAAVRA----LGC-DLVINRAELGITDDIADDPRRV  288 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----TTC-CCEEEHHHHTCCTTGGGCHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh----cCC-CEEEeccccccccccccccccc
Confidence            45688999999997 999999999999  478999999999998887754    563 21111111111           


Q ss_pred             --------ccccc-cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 --------MQVKE-KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 --------~~~~~-~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                              ..+.. .-..+|+||-++..        ..++...+.|++||+++.-.
T Consensus       289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G~--------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          289 VETGRKLAKLVVEKAGREPDIVFEHTGR--------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEECSCH--------HHHHHHHHHSCTTCEEEESC
T ss_pred             chhhhHHHHHHHHHhCCCceEEEECCCc--------hHHHHHHHHHhcCCEEEEEe
Confidence                    00000 01369999865441        25678888999999998854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.08  E-value=0.00045  Score=64.24  Aligned_cols=97  Identities=13%  Similarity=0.037  Sum_probs=64.8

Q ss_pred             CCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccccCCCcc
Q 036061          128 VVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEKLGEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~~~~fD  204 (284)
                      ..++++||..| +|++|..++.+|+.  .|++|++++ +++..+.+    +++|.   ...+-.  .|..+.......+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~--~Ga~Vi~~~-~~~~~~~~----~~lGa---~~v~~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKA--WDAHVTAVC-SQDASELV----RKLGA---DDVIDYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHH----HHTTC---SEEEETTSSCHHHHHHTSCCBS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEe-ChHHHHHH----HHcCC---CEEEECCchHHHHHHhhcCCCC
Confidence            67889999999 79999999999983  689999999 66665555    45673   212211  11111111224699


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +||-+...    +  ...++...+.+++||+++.-.
T Consensus       251 ~vid~~g~----~--~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          251 FILDNVGG----S--TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEEESSCT----T--HHHHGGGGBCSSSCCEEEESC
T ss_pred             EEEECCCC----h--hhhhHHHHHhhcCCcEEEEeC
Confidence            99865442    1  123567778999999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.08  E-value=0.00099  Score=54.10  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--c--cCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--E--KLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~--~~~~fD  204 (284)
                      .++++|+.+|+|.+|.......+  ..|.+|+.+|.+++.++.+++   ..     .+.++.+|..+..  .  ...++|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~--~~g~~V~vid~~~~~~~~~~~---~~-----g~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLAS--SSGHSVVVVDKNEYAFHRLNS---EF-----SGFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCGGGGGGSCT---TC-----CSEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHh---cC-----CCcEEEecCCCHHHHHHcCcccCC
Confidence            56789999999988766544443  368899999999887543321   22     3456777764311  1  134689


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+.+..-    ......+..+.+.+.+...++.+.
T Consensus        87 ~Vi~~~~~----~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           87 MVFAFTND----DSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             EEEECSSC----HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEEeCC----cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            99876432    333445555666667777777776

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.07  E-value=0.0025  Score=58.36  Aligned_cols=99  Identities=18%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             CCCCCEEEEecc----CCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          128 VVNPKKVAFVGS----GPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGs----G~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      ...+++||++|+    |.-|-| ..+.+. .+ |+.|+++|+.|-.           .  ... .+++||..+... .+.
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS-~VLr~~-~p~g~~VVavDL~~~~-----------s--da~-~~IqGD~~~~~~-~~k  169 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT-AVLRQW-LPTGTLLVDSDLNDFV-----------S--DAD-STLIGDCATVHT-ANK  169 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHH-SCTTCEEEEEESSCCB-----------C--SSS-EEEESCGGGEEE-SSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH-HHHHHh-CCCCcEEEEeeCcccc-----------c--CCC-eEEEcccccccc-CCC
Confidence            478899999997    334555 456653 55 5799999999643           1  112 569999766444 367


Q ss_pred             ccEEEeccc---ccCChH-------HHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          203 YDCIFLAAL---VGMSKE-------EKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       203 fD~V~~aa~---v~~~~~-------~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ||+|+.+-.   -|....       -=+.+++-+.++|+|||.|++--.+|
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            999996632   132111       23566777788999999999988655

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.07  E-value=0.0029  Score=59.68  Aligned_cols=109  Identities=12%  Similarity=0.010  Sum_probs=62.7

Q ss_pred             CCEEEEeccCCChhHHHHHHh-------h------cCCCcEEEEEeCChHH-HHHHHHHHHh----------cCCCCCCe
Q 036061          131 PKKVAFVGSGPMPLTSIVMAK-------N------HLKSTHFDNFDIDEAA-NDVARQIVSS----------DIEFEKRM  186 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~-------~------~~~g~~V~~iDid~~a-i~~Ar~~~~~----------~G~l~~~I  186 (284)
                      +.+|+|+|||++|.|...+..       +      ..|..+|..-|+-.-- +.+-+.+-..          .+ ...+-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~-~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAA-DGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC----CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccc-cCCCc
Confidence            589999999998877654221       0      0145667666654422 2222221110          00 00112


Q ss_pred             EEEEecccc---ccccCCCccEEEecccccCCh-------------------------------------HHHHHHHHHH
Q 036061          187 KFVTCDIMQ---VKEKLGEYDCIFLAALVGMSK-------------------------------------EEKVKIIKHI  226 (284)
Q Consensus       187 ~f~~~D~~~---~~~~~~~fD~V~~aa~v~~~~-------------------------------------~~k~~il~~l  226 (284)
                      .|+.|....   -+.+.+.||+|+.+..++|-.                                     .+-..+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444433   123346799999877655521                                     1345679999


Q ss_pred             HhhcCCCcEEEEEe
Q 036061          227 RKYMKDGGVLLVRS  240 (284)
Q Consensus       227 ~~~l~pGg~lv~r~  240 (284)
                      ++.|+|||++++..
T Consensus       212 a~eL~pGG~mvl~~  225 (374)
T 3b5i_A          212 AAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEE
Confidence            99999999999865

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.06  E-value=0.00049  Score=63.80  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEe-cccc-ccccCCCccE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE---AANDVARQIVSSDIEFEKRMKFVTC-DIMQ-VKEKLGEYDC  205 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~---~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~-~~~~~~~fD~  205 (284)
                      +++||.+|+|++|..++.+|+  ..|++|+++|.++   +..+.+++    +|.  +.+   .. |..+ +....+.+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~--~~Ga~Vi~~~~~~~~~~~~~~~~~----~ga--~~v---~~~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFR--TYGLEVWMANRREPTEVEQTVIEE----TKT--NYY---NSSNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHH--HHTCEEEEEESSCCCHHHHHHHHH----HTC--EEE---ECTTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCCccchHHHHHHHH----hCC--cee---chHHHHHHHHHhCCCCCE
Confidence            899999999999999999998  3688999999998   77666654    562  222   11 1111 0000146999


Q ss_pred             EEecccccCChHHHHHHH-HHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKII-KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il-~~l~~~l~pGg~lv~r~  240 (284)
                      ||.++..    .   ..+ +...+.|++||+++.-.
T Consensus       250 vid~~g~----~---~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA----D---VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC----C---THHHHHHGGGEEEEEEEEECS
T ss_pred             EEECCCC----h---HHHHHHHHHHHhcCCEEEEEe
Confidence            9866542    1   145 78889999999988754

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.06  E-value=0.00061  Score=62.86  Aligned_cols=108  Identities=9%  Similarity=-0.035  Sum_probs=67.2

Q ss_pred             HHHhc-CCCCC-CEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE---ecccc
Q 036061          122 ILDEN-GVVNP-KKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT---CDIMQ  195 (284)
Q Consensus       122 ~l~~~-~~~~~-~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~---~D~~~  195 (284)
                      .+.+. ...++ ++||..|+ |++|..++.+|+.  .|++|+++..+++..+..++.++++|. ..-+....   .|..+
T Consensus       157 ~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~~~~lGa-~~vi~~~~~~~~~~~~  233 (364)
T 1gu7_A          157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELGA-TQVITEDQNNSREFGP  233 (364)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHTC-SEEEEHHHHHCGGGHH
T ss_pred             HHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHH--CCCEEEEEecCccccHHHHHHHHhcCC-eEEEecCccchHHHHH
Confidence            34443 56788 99999997 9999999999993  689999988776543333344456773 21111111   12111


Q ss_pred             ccc-----cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKE-----KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~-----~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...     ....+|+||-+..-     +  ... ...+.|++||+++.-.
T Consensus       234 ~i~~~t~~~~~g~Dvvid~~G~-----~--~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          234 TIKEWIKQSGGEAKLALNCVGG-----K--SST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHHHHHHTCCEEEEEESSCH-----H--HHH-HHHHTSCTTCEEEECC
T ss_pred             HHHHHhhccCCCceEEEECCCc-----h--hHH-HHHHHhccCCEEEEec
Confidence            111     12369999865431     1  122 5678999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.05  E-value=0.0068  Score=47.15  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=59.4

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V  206 (284)
                      +++|+.+|+|.+|........  ..|.+|+.+|.+++..+..++   ..|     +.++.+|..+..    ....++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~--~~g~~v~~~d~~~~~~~~~~~---~~~-----~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EID-----ALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HCS-----SEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---hcC-----cEEEEcCCCCHHHHHHcCcccCCEE
Confidence            479999999977665332222  267899999999987654432   334     456777765421    124579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+...    ......+..+.+.+.++ .++++.
T Consensus        74 i~~~~~----~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           74 IAVTGK----EEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             EECCSC----HHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             EEeeCC----chHHHHHHHHHHHcCCC-EEEEEe
Confidence            876432    23334556677778886 455544

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.04  E-value=0.00035  Score=64.53  Aligned_cols=98  Identities=8%  Similarity=-0.073  Sum_probs=67.6

Q ss_pred             cCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--ccc-ccc--c
Q 036061          126 NGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQ-VKE--K  199 (284)
Q Consensus       126 ~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~-~~~--~  199 (284)
                      ....++++||..| +|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-..+  ..+ +..  .
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~  228 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTR--MAGAIPLVTAGSQKKLQMAEK----LGA---AAGFNYKKEDFSEATLKFTK  228 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC---cEEEecCChHHHHHHHHHhc
Confidence            3567899999999 7889999999988  468999999999998887754    452   21221111  100 111  1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||.++..    +    .++...+.|++||++++-.
T Consensus       229 ~~~~d~vi~~~G~----~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          229 GAGVNLILDCIGG----S----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TSCEEEEEESSCG----G----GHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCc----h----HHHHHHHhccCCCEEEEEe
Confidence            1369999876542    1    3667788999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.04  E-value=0.0046  Score=59.61  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC------CCCeEEEEeccccc
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF------EKRMKFVTCDIMQV  196 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l------~~~I~f~~~D~~~~  196 (284)
                      -++|..||+|.+|..- ..+++   .|..|+.+|++++.++.+++.++.       .|.+      ....++ +.|.   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~---~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~---  109 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST---  109 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH---
Confidence            4689999999877542 33443   788999999999999988764331       1100      111233 4443   


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                       ....+.|+||.+..  .+..-|..+++++...++||.+|+.
T Consensus       110 -~~~~~aDlVIeaVp--e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             -GGGTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -HHHCCCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence             23457899998753  2445688999999999999988876

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.03  E-value=0.0068  Score=53.92  Aligned_cols=108  Identities=13%  Similarity=0.198  Sum_probs=71.4

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLG  201 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~  201 (284)
                      .++.+.++.+|+|+||+|+|.|-.+..+   .| .+|.++|+-+.--+ --+++...|.  +.|+|..+ |+..++.  .
T Consensus        72 ek~~l~~g~~VvDLGaapGGWSq~~a~~---~g~~~V~avdvG~~ghe-~P~~~~s~gw--n~v~fk~gvDv~~~~~--~  143 (267)
T 3p8z_A           72 ERNMVIPEGRVIDLGCGRGGWSYYCAGL---KKVTEVRGYTKGGPGHE-EPVPMSTYGW--NIVKLMSGKDVFYLPP--E  143 (267)
T ss_dssp             HTTSSCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCSTTSC-CCCCCCCTTT--TSEEEECSCCGGGCCC--C
T ss_pred             HhcCCCCCCEEEEcCCCCCcHHHHHHHh---cCCCEEEEEecCCCCcc-CcchhhhcCc--CceEEEeccceeecCC--c
Confidence            4556688899999999999998655443   44 46999999754321 0011234453  68999999 9865554  5


Q ss_pred             CccEEEecccc--cCChHHH---HHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV--GMSKEEK---VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v--~~~~~~k---~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||.|+.+-.=  +-..-+.   .++|+-+.+.|++ |-+++--
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            69999866421  1111122   4478888899999 6666644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.02  E-value=0.00058  Score=62.93  Aligned_cols=100  Identities=8%  Similarity=0.014  Sum_probs=68.7

Q ss_pred             hcCCCCC--CEEEEecc-CCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--ccc-cc
Q 036061          125 ENGVVNP--KKVAFVGS-GPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQ-VK  197 (284)
Q Consensus       125 ~~~~~~~--~~VL~IGs-G~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~-~~  197 (284)
                      .....++  ++||..|+ |++|..++.+|+  ..|+ +|+++|.+++..+.+++   .+|.   ...+-..+  ..+ +.
T Consensus       153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~--~~Ga~~Vi~~~~~~~~~~~~~~---~~g~---~~~~d~~~~~~~~~~~  224 (357)
T 2zb4_A          153 KGHITAGSNKTMVVSGAAGACGSVAGQIGH--FLGCSRVVGICGTHEKCILLTS---ELGF---DAAINYKKDNVAEQLR  224 (357)
T ss_dssp             HSCCCTTSCCEEEESSTTBHHHHHHHHHHH--HTTCSEEEEEESCHHHHHHHHH---TSCC---SEEEETTTSCHHHHHH
T ss_pred             hcCCCCCCccEEEEECCCcHHHHHHHHHHH--HCCCCeEEEEeCCHHHHHHHHH---HcCC---ceEEecCchHHHHHHH
Confidence            4456788  99999998 889999999988  4688 99999999987776654   3562   21121111  100 00


Q ss_pred             c-cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 E-KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~-~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      . ..+.+|+||.++.     .   ..++...+.|++||++++-.
T Consensus       225 ~~~~~~~d~vi~~~G-----~---~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          225 ESCPAGVDVYFDNVG-----G---NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHCTTCEEEEEESCC-----H---HHHHHHHHTEEEEEEEEECC
T ss_pred             HhcCCCCCEEEECCC-----H---HHHHHHHHHhccCcEEEEEC
Confidence            0 0126999986654     1   46788899999999998754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.02  E-value=0.0042  Score=56.84  Aligned_cols=111  Identities=12%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCC
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLG  201 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~  201 (284)
                      .+..+.++.+|+|+||+|+|.|-.+..+   .|+ .|.|+|+-..--+ --.++..+|.  +-|.|..+ |+..++.  .
T Consensus        88 ~~~~l~~~~~VlDLGaapGGwsq~~~~~---~gv~~V~avdvG~~~he-~P~~~~ql~w--~lV~~~~~~Dv~~l~~--~  159 (321)
T 3lkz_A           88 ERRFLEPVGKVIDLGCGRGGWCYYMATQ---KRVQEVRGYTKGGPGHE-EPQLVQSYGW--NIVTMKSGVDVFYRPS--E  159 (321)
T ss_dssp             HTTSCCCCEEEEEETCTTCHHHHHHTTC---TTEEEEEEECCCSTTSC-CCCCCCBTTG--GGEEEECSCCTTSSCC--C
T ss_pred             HhcCCCCCCEEEEeCCCCCcHHHHHHhh---cCCCEEEEEEcCCCCcc-CcchhhhcCC--cceEEEeccCHhhCCC--C
Confidence            4556688889999999999998655433   555 5999999855110 0001123442  45899988 8876665  4


Q ss_pred             CccEEEecccc--cCChHHH---HHHHHHHHhhcCCC-cEEEEEecC
Q 036061          202 EYDCIFLAALV--GMSKEEK---VKIIKHIRKYMKDG-GVLLVRSAK  242 (284)
Q Consensus       202 ~fD~V~~aa~v--~~~~~~k---~~il~~l~~~l~pG-g~lv~r~~~  242 (284)
                      .+|.|+++-.=  +-+.-+.   .++|+-+.+.|++| |-+++---.
T Consensus       160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~  206 (321)
T 3lkz_A          160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC  206 (321)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence            69999876431  1111122   44788888999999 888875533

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.01  E-value=0.0071  Score=55.43  Aligned_cols=107  Identities=13%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEecccc-ccccC--CCcc-
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIMQ-VKEKL--GEYD-  204 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~~-~~~~~--~~fD-  204 (284)
                      ....|+.+||| ++..+..+..  ..+++|.-+| .|+.++..++++...|. ...+.+++.+|+.+ +...+  ..|| 
T Consensus       102 g~~QvV~LGaG-lDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~  177 (310)
T 2uyo_A          102 GIRQFVILASG-LDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP  177 (310)
T ss_dssp             TCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             CCCeEEEeCCC-CCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCC
Confidence            45789999999 5655444432  2368999999 79999999999987542 24678999999876 11111  1232 


Q ss_pred             ---EEEeccc--ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 ---CIFLAAL--VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ---~V~~aa~--v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         .+|++-.  .-++.++-.++++.+.....||+.+++..
T Consensus       178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~  218 (310)
T 2uyo_A          178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  218 (310)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence               3444432  25577788899999999999999999976

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.00  E-value=0.00038  Score=66.65  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=69.1

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-----------
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-----------  193 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-----------  193 (284)
                      ....++++||.+|+ |++|..++.+|+  ..|++|++++.+++..+.+++    +|. ..-+.....|.           
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak--~~Ga~vi~~~~~~~~~~~~~~----lGa-~~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFAL--AGGANPICVVSSPQKAEICRA----MGA-EAIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----HTC-CEEEETTTTTCCSEEETTEECH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHH--HcCCeEEEEECCHHHHHHHHh----hCC-cEEEecCcCcccccccccccch
Confidence            35688999999998 999999999999  478999999999998887765    562 11111111110           


Q ss_pred             -------cccc--ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 -------MQVK--EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 -------~~~~--~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                             ..+.  ..-..+|+||-+..     .   ..++...+.|++||++++-.
T Consensus       297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-----~---~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGEDIDIVFEHPG-----R---ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECSC-----H---HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCC-----c---hhHHHHHHHhhCCcEEEEEe
Confidence                   0010  01136999986543     1   46788889999999998743

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.99  E-value=0.0016  Score=60.06  Aligned_cols=97  Identities=14%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------c
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------E  198 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~  198 (284)
                      ....++++||..|+ |++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ...+-..+ .++.      .
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~--~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~d~~~-~~~~~~~~~~~  235 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIAR--AYGLKILGTAGTEEGQKIVLQ----NGA---HEVFNHRE-VNYIDKIKKYV  235 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTS-TTHHHHHHHHH
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHH--HCCCEEEEEeCChhHHHHHHH----cCC---CEEEeCCC-chHHHHHHHHc
Confidence            45688999999997 889999999988  468999999999998876654    562   21121111 1111      0


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+|+||.++..        ..++...+.+++||+++.-.
T Consensus       236 ~~~~~D~vi~~~G~--------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          236 GEKGIDIIIEMLAN--------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             CTTCEEEEEESCHH--------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCcEEEEECCCh--------HHHHHHHHhccCCCEEEEEe
Confidence            11369999866541        24677889999999988754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.96  E-value=0.00045  Score=62.83  Aligned_cols=98  Identities=9%  Similarity=0.032  Sum_probs=67.7

Q ss_pred             cCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--ccc-ccc--c
Q 036061          126 NGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--IMQ-VKE--K  199 (284)
Q Consensus       126 ~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~~~-~~~--~  199 (284)
                      ....++++||..| +|++|..++.+++  ..|++|+++|.+++..+.+++    +|.   ...+-..|  ..+ +..  .
T Consensus       136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~--~~G~~V~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~  206 (327)
T 1qor_A          136 YEIKPDEQFLFHAAAGGVGLIACQWAK--ALGAKLIGTVGTAQKAQSALK----AGA---WQVINYREEDLVERLKEITG  206 (327)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC---CEEEECCCccHHHHHHHHhC
Confidence            3567899999999 7889999998888  368999999999998887765    452   22221111  100 111  1


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+|+||.++.        ...++...+.|++||+++.-.
T Consensus       207 ~~~~D~vi~~~g--------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          207 GKKVRVVYDSVG--------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TCCEEEEEECSC--------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCc--------hHHHHHHHHHhcCCCEEEEEe
Confidence            135999986643        135678889999999988754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.93  E-value=0.0055  Score=57.97  Aligned_cols=106  Identities=8%  Similarity=-0.092  Sum_probs=70.6

Q ss_pred             CCEEEEeccCCChhHHHHHHhh---------------cCCCcEEEEEeCC-----------hHHHHHHHHHHHhcCCCCC
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKN---------------HLKSTHFDNFDID-----------EAANDVARQIVSSDIEFEK  184 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~---------------~~~g~~V~~iDid-----------~~ai~~Ar~~~~~~G~l~~  184 (284)
                      +.+|+|+|||.+|-|...+..-               ..|..+|..-|+-           |...+..++   ..| ...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g-~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENG-RKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTC-CCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hcc-CCC
Confidence            6899999999988776655430               1356788899988           655544333   344 223


Q ss_pred             CeEEEEeccccc---cccCCCccEEEecccccCC-hH-------------------------------------HHHHHH
Q 036061          185 RMKFVTCDIMQV---KEKLGEYDCIFLAALVGMS-KE-------------------------------------EKVKII  223 (284)
Q Consensus       185 ~I~f~~~D~~~~---~~~~~~fD~V~~aa~v~~~-~~-------------------------------------~k~~il  223 (284)
                      +--|+.|....+   +.+.+.||+||.++.++|- ..                                     +-..+|
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            458888876542   3344689999988766661 11                                     112337


Q ss_pred             HHHHhhcCCCcEEEEEe
Q 036061          224 KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       224 ~~l~~~l~pGg~lv~r~  240 (284)
                      +..++.|+|||++++..
T Consensus       209 ~~Ra~eL~pGG~mvl~~  225 (384)
T 2efj_A          209 RIHSEELISRGRMLLTF  225 (384)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEE
Confidence            77899999999999976

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.92  E-value=0.00068  Score=66.21  Aligned_cols=90  Identities=21%  Similarity=0.150  Sum_probs=63.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|+.+|+|++|......++  ..|++|+++|+++...+.|++    .|.     ++  .+..+.   ....|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lk--a~Ga~Viv~d~~~~~~~~A~~----~Ga-----~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMK--GQGARVSVTEIDPINALQAMM----EGF-----DV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TTC-----EE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----EE--ecHHHH---HhCCCEEE
Confidence            578999999999999998888887  368999999999988776654    462     22  233222   34689999


Q ss_pred             ecccccCChHHHHHHH-HHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKII-KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il-~~l~~~l~pGg~lv~r~  240 (284)
                      .+....       .++ ....+.||+||+++.-.
T Consensus       335 ~atgt~-------~~i~~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          335 TATGNK-------DIIMLEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             ECSSSS-------CSBCHHHHHHSCTTCEEEECS
T ss_pred             ECCCCH-------HHHHHHHHHhcCCCcEEEEeC
Confidence            764320       122 25667799999986644

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.92  E-value=0.00086  Score=61.03  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             cCCCCCC-EEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-cccccc--C
Q 036061          126 NGVVNPK-KVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEK--L  200 (284)
Q Consensus       126 ~~~~~~~-~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~--~  200 (284)
                      ....+++ +||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  +. .+-..|. .+....  .
T Consensus       145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lGa--~~-v~~~~~~~~~~~~~~~~  215 (330)
T 1tt7_A          145 NGLSPEKGSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQ----LGA--SE-VISREDVYDGTLKALSK  215 (330)
T ss_dssp             TTCCGGGCCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHH----HTC--SE-EEEHHHHCSSCCCSSCC
T ss_pred             cCcCCCCceEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC--cE-EEECCCchHHHHHHhhc
Confidence            3456665 8999997 9999999999983  67899999999888877765    562  21 1211111 111111  1


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+|+||-+..     .   ..++...+.+++||++++-.
T Consensus       216 ~~~d~vid~~g-----~---~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          216 QQWQGAVDPVG-----G---KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CCEEEEEESCC-----T---HHHHHHHTTEEEEEEEEECC
T ss_pred             CCccEEEECCc-----H---HHHHHHHHhhcCCCEEEEEe
Confidence            36999986543     1   25788889999999998754

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.91  E-value=0.0018  Score=59.73  Aligned_cols=99  Identities=9%  Similarity=0.009  Sum_probs=60.6

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEe------ccccccc
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNF-DIDEAANDVARQIVSSDIEFEKRMKFVTC------DIMQVKE  198 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~G~l~~~I~f~~~------D~~~~~~  198 (284)
                      ...++++||.+|+ |++|..++.+|+.  .|++++++ +.++.. +.-++.++++|.  +.  ++..      ++.+...
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~-~~~~~~~~~lGa--~~--vi~~~~~~~~~~~~~~~  236 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAA--LGLRTINVVRDRPDI-QKLSDRLKSLGA--EH--VITEEELRRPEMKNFFK  236 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEECCCSCH-HHHHHHHHHTTC--SE--EEEHHHHHSGGGGGTTS
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHH--cCCEEEEEecCccch-HHHHHHHHhcCC--cE--EEecCcchHHHHHHHHh
Confidence            5688999999997 9999999999993  57876555 444332 111234456773  22  2221      1212111


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.+|+||-+..     .+.   .....+.+++||+++.-.
T Consensus       237 ~~~~~Dvvid~~g-----~~~---~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 DMPQPRLALNCVG-----GKS---STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCCCSEEEESSC-----HHH---HHHHHTTSCTTCEEEECC
T ss_pred             CCCCceEEEECCC-----cHH---HHHHHHhhCCCCEEEEEe
Confidence            1125999986543     111   235678999999998753

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0016  Score=60.12  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             HHHHh--cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-----c
Q 036061          121 RILDE--NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-----I  193 (284)
Q Consensus       121 ~~l~~--~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-----~  193 (284)
                      ..+.+  ....++++||.+|+|++|..++.+|+. ..|++|+++|.+++..+.+++    +|.  +. .+-..+     +
T Consensus       175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~v  246 (359)
T 1h2b_A          175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LGA--DH-VVDARRDPVKQV  246 (359)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TTC--SE-EEETTSCHHHHH
T ss_pred             HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCC--CE-EEeccchHHHHH
Confidence            34445  567889999999999999999999993 338999999999998887764    562  11 111111     1


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++. .-..+|+||-+...    +. ...++...+.  +||+++.-.
T Consensus       247 ~~~~-~g~g~Dvvid~~G~----~~-~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          247 MELT-RGRGVNVAMDFVGS----QA-TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             HHHT-TTCCEEEEEESSCC----HH-HHHHGGGGEE--EEEEEEECC
T ss_pred             HHHh-CCCCCcEEEECCCC----ch-HHHHHHHhhc--CCCEEEEEe
Confidence            1111 11269999865442    11 1145555655  899988754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.85  E-value=0.00028  Score=67.00  Aligned_cols=99  Identities=24%  Similarity=0.314  Sum_probs=65.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc--------------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM--------------  194 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~--------------  194 (284)
                      .++.+|+.+|+|++|..++.+|+  ..|++|+.+|++++..+.+++    +|.     ++...|..              
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~--~~Ga~V~v~D~~~~~~~~~~~----lGa-----~~~~~~~~~~~~~~~g~~~~~~  238 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAAN--SLGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEAGSGDGYAKVMS  238 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCGGGHHHHHH----TTC-----EECCC--------CCHHHHHHS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHHHH----cCC-----EEEEecccccccccccchhhcc
Confidence            36899999999999999999888  467899999999988777643    452     22211110              


Q ss_pred             ---------cccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 ---------QVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ---------~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                               .+.......|+|+.+.++ +.. .+ .-+-++..+.|+||++++--.
T Consensus       239 ~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~-ap-~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          239 DAFIKAEMELFAAQAKEVDIIVTTALIPGKP-AP-KLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHCSEEEECCCCTTSC-CC-CCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccCCCC-CC-eeeCHHHHhcCCCCcEEEEEc
Confidence                     111122358999987655 211 11 112256777899999887655

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.84  E-value=0.00047  Score=64.88  Aligned_cols=99  Identities=23%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE---Eec--------------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV---TCD--------------  192 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~---~~D--------------  192 (284)
                      ++++|+.+|+|++|..++.+++  ..|++|+.+|++++..+.+++    +|.     ++.   ..+              
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~--~~Ga~V~~~d~~~~~~~~~~~----~Ga-----~~~~i~~~~~~~~~~~~~~~~~~  239 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAK--RLGAVVMATDVRAATKEQVES----LGG-----KFITVDDEAMKTAETAGGYAKEM  239 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCSTTHHHHHH----TTC-----EECCC------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEeecccccccccccccchhhc
Confidence            6899999999999999999888  467899999999987776654    442     111   100              


Q ss_pred             --------cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 --------IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 --------~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                              ...+......+|+|+.+.+++....+ .-+.++..+.|+||++++--.
T Consensus       240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~-~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAP-VLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSCCC-CCSCHHHHTTSCTTCEEEETT
T ss_pred             CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCC-eeeCHHHHhcCCCCCEEEEEe
Confidence                    00011223468999977655211111 112356778899999887654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.82  E-value=0.00035  Score=64.26  Aligned_cols=94  Identities=9%  Similarity=-0.021  Sum_probs=63.2

Q ss_pred             CCC-CEEEEe-ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cC---
Q 036061          129 VNP-KKVAFV-GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KL---  200 (284)
Q Consensus       129 ~~~-~~VL~I-GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~---  200 (284)
                      .++ ++|+.. |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   . .++..+-.++..   ..   
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----~Ga---~-~~~~~~~~~~~~~v~~~~~~  231 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKE--EGFRPIVTVRRDEQIALLKD----IGA---A-HVLNEKAPDFEATLREVMKA  231 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESCGGGHHHHHH----HTC---S-EEEETTSTTHHHHHHHHHHH
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC---C-EEEECCcHHHHHHHHHHhcC
Confidence            344 566654 899999999999993  68999999999998888765    562   1 122111111111   11   


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|+||-+...        ..++...+.|++||+++.-.
T Consensus       232 ~g~D~vid~~g~--------~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          232 EQPRIFLDAVTG--------PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HCCCEEEESSCH--------HHHHHHHHHSCTTCEEEECC
T ss_pred             CCCcEEEECCCC--------hhHHHHHhhhcCCCEEEEEe
Confidence            269999865542        12467888999999998854

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.80  E-value=0.013  Score=57.52  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=77.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHh--hcC---------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAK--NHL---------KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~--~~~---------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      .+.++.+|+|-.||++|+-.-..-.  ...         ....+.|+|+++.+...|+-++.-.|.  +.-++.++|...
T Consensus       214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~--~~~~I~~~dtL~  291 (530)
T 3ufb_A          214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL--EYPRIDPENSLR  291 (530)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC--SCCEEECSCTTC
T ss_pred             ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC--cccccccccccc
Confidence            4567789999999998874322211  011         124699999999999999988776673  345778888765


Q ss_pred             cccc----CCCccEEEecccccCC--hH-------------HHHHHHHHHHhhcC-------CCcEEEEEecCc
Q 036061          196 VKEK----LGEYDCIFLAALVGMS--KE-------------EKVKIIKHIRKYMK-------DGGVLLVRSAKG  243 (284)
Q Consensus       196 ~~~~----~~~fD~V~~aa~v~~~--~~-------------~k~~il~~l~~~l~-------pGg~lv~r~~~g  243 (284)
                      .+..    ...||+|+.+.--+..  ..             .-..+++++.+.|+       |||++.+--++|
T Consensus       292 ~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          292 FPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             SCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             CchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            3321    2369999987643221  11             11346888988887       699888766554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.77  E-value=0.0013  Score=61.11  Aligned_cols=97  Identities=13%  Similarity=0.082  Sum_probs=64.1

Q ss_pred             CCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCccE
Q 036061          129 VNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD~  205 (284)
                      .++++||.+|+ |++|..++.+|+  ..|++|+++. +++..+.++    ++|. ..-+.+...|..+....  .+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~--~~Ga~Vi~~~-~~~~~~~~~----~lGa-~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLR--LSGYIPIATC-SPHNFDLAK----SRGA-EEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHH--HTTCEEEEEE-CGGGHHHHH----HTTC-SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHH--HCCCEEEEEe-CHHHHHHHH----HcCC-cEEEECCCchHHHHHHHHccCCccE
Confidence            68899999999 789999999999  4789999985 887766655    4662 11111111221111111  135999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~  240 (284)
                      ||-+..-       ...++...+.| ++||+++.-.
T Consensus       235 v~d~~g~-------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN-------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS-------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc-------hHHHHHHHHHhhcCCCEEEEEe
Confidence            9865442       23567778888 6999988754

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.76  E-value=0.002  Score=58.87  Aligned_cols=121  Identities=10%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             hhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 036061          111 NYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT  190 (284)
Q Consensus       111 ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~  190 (284)
                      -+.+|.+..    .+....++++|+|+||+|+|.|-..+.+  .+-..|+|+|+........+. ....+.  +-+.+..
T Consensus        66 aa~KL~ei~----ek~l~~~g~~vlDLGaaPGgWsqva~~~--~gv~sV~Gvdlg~~~~~~P~~-~~~~~~--~iv~~~~  136 (300)
T 3eld_A           66 GAAKIRWLH----ERGYLRITGRVLDLGCGRGGWSYYAAAQ--KEVMSVKGYTLGIEGHEKPIH-MQTLGW--NIVKFKD  136 (300)
T ss_dssp             THHHHHHHH----HHTSCCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCC-CCBTTG--GGEEEEC
T ss_pred             HHHHHHHHH----HhCCCCCCCEEEEcCCCCCHHHHHHHHh--cCCceeeeEEecccccccccc-ccccCC--ceEEeec
Confidence            334555443    2223478899999999999998665433  234579999997542100000 001121  2233432


Q ss_pred             e-ccccccccCCCccEEEecccc--cCChHHH---HHHHHHHHhhcCCC-cEEEEEecC
Q 036061          191 C-DIMQVKEKLGEYDCIFLAALV--GMSKEEK---VKIIKHIRKYMKDG-GVLLVRSAK  242 (284)
Q Consensus       191 ~-D~~~~~~~~~~fD~V~~aa~v--~~~~~~k---~~il~~l~~~l~pG-g~lv~r~~~  242 (284)
                      + |+..+.  ...||+|+.+..-  |...-+-   ..+++-..+.|+|| |.|++--..
T Consensus       137 ~~di~~l~--~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          137 KSNVFTMP--TEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             SCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CceeeecC--CCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            2 333222  2479999966332  2211111   34577778999999 999997765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.76  E-value=0.011  Score=52.47  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE---------EEeccccccccCC
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKF---------VTCDIMQVKEKLG  201 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f---------~~~D~~~~~~~~~  201 (284)
                      ++|+.||+|.+|..- ..|++   .|.+|+.+|++++.++..++.    |.   .+..         ...+..+......
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~----g~---~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ---GGNDVTLIDQWPAHIEAIRKN----GL---IADFNGEEVVANLPIFSPEEIDHQNE   73 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHH----CE---EEEETTEEEEECCCEECGGGCCTTSC
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhC----CE---EEEeCCCeeEecceeecchhhcccCC
Confidence            589999999777542 23444   678999999999877655442    41   1110         0001111111223


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      .+|+||++.--    ..-..+++.+.+.++||..++.-. +|+
T Consensus        74 ~~d~vi~~v~~----~~~~~v~~~l~~~l~~~~~iv~~~-~g~  111 (316)
T 2ew2_A           74 QVDLIIALTKA----QQLDAMFKAIQPMITEKTYVLCLL-NGL  111 (316)
T ss_dssp             CCSEEEECSCH----HHHHHHHHHHGGGCCTTCEEEECC-SSS
T ss_pred             CCCEEEEEecc----ccHHHHHHHHHHhcCCCCEEEEec-CCC
Confidence            79999986432    455778899999999988766543 343

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.72  E-value=0.0077  Score=54.72  Aligned_cols=100  Identities=20%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCc--EEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKST--HFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~--~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|..||+|.+|.+......  ..|.  +|+.+|++++.++. +..+.+... ....+++...|.    ....+.|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la--~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~----~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV--LRGSCSELVLVDRDEDRAQAEAEDIAHAAP-VSHGTRVWHGGH----SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCCSEEEEECSSHHHHHHHHHHHTTSCC-TTSCCEEEEECG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hcCCeEEEECCH----HHhCCCCEEEE
Confidence            48999999987776544333  2455  89999999986653 333322222 123455544442    24567899998


Q ss_pred             cccccC------------ChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGM------------SKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~------------~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ++.++.            +.+-+.++.+.+.++ .|++.+++-
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~  115 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVT  115 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEEC
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence            875421            112347778888887 699988763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.69  E-value=0.0052  Score=59.11  Aligned_cols=100  Identities=20%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----C---------CCCeEEEEecccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----F---------EKRMKFVTCDIMQVK  197 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l---------~~~I~f~~~D~~~~~  197 (284)
                      ++|..||+|.+|.. |..|++   .|.+|+++|+|++.++..++-  ....    +         ..++++ +.|..+. 
T Consensus         3 mkI~VIG~G~vG~~lA~~La~---~G~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea-   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE---LGANVRCIDTDRNKIEQLNSG--TIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA-   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHT--CSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH-
T ss_pred             CEEEEECcCHHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHcC--CCcccCCCHHHHHHhhcccCcEEE-ECCHHHH-
Confidence            68999999977654 344555   689999999999988776551  1000    0         124554 3343322 


Q ss_pred             ccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ....|+||++.--..      +...-..+++.+.+.+++|.+++..+
T Consensus        76 --~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           76 --VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             --GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             --HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence              345799998753210      11256788999999999999888876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.69  E-value=0.0057  Score=58.20  Aligned_cols=97  Identities=12%  Similarity=0.046  Sum_probs=70.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~  205 (284)
                      ...+|+.+|+|.+|.......+  ..|..|+.||.|++.++.+++    .|     +.++.||+++..    ......|+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~--~~g~~vvvId~d~~~v~~~~~----~g-----~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLL--SSGVKMVVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHH--HTTCCEEEEECCHHHHHHHHH----TT-----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHh----CC-----CeEEEcCCCCHHHHHhcCCCccCE
Confidence            4568999999987776544433  368999999999999988764    34     467889998632    13457899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..    ..+....+-...+.+.|+..+++|..
T Consensus        72 viv~~~----~~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           72 LINAID----DPQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EEECCS----SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEECCC----ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            886543    24445556677778899999999874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.67  E-value=0.0078  Score=53.30  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC-CccEEE
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKST--HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG-EYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~-~fD~V~  207 (284)
                      ++|.+||+|.+|.+-.. |++   .|.  +|+++|.+++..+.++    +.|. ..  .. ..|..+   ... ..|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~---~g~~~~V~~~d~~~~~~~~~~----~~g~-~~--~~-~~~~~~---~~~~~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRR---SGFKGKIYGYDINPESISKAV----DLGI-ID--EG-TTSIAK---VEDFSPDFVM   67 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH---TTCCSEEEEECSCHHHHHHHH----HTTS-CS--EE-ESCGGG---GGGTCCSEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHH----HCCC-cc--cc-cCCHHH---HhcCCCCEEE
Confidence            48999999987765333 333   455  8999999998877654    4562 21  11 233322   234 689999


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ++.-.    ..-.++++.+.+.+++|.+++.
T Consensus        68 lavp~----~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           68 LSSPV----RTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             ECSCH----HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EcCCH----HHHHHHHHHHHhhCCCCcEEEE
Confidence            87542    4455788889899999987665

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.65  E-value=0.0025  Score=58.57  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHh---hcCCCcE--EEEEeCCh---------HHHHHHHHHHHhcCC-CCCCe--EEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAK---NHLKSTH--FDNFDIDE---------AANDVARQIVSSDIE-FEKRM--KFVTC  191 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~---~~~~g~~--V~~iDid~---------~ai~~Ar~~~~~~G~-l~~~I--~f~~~  191 (284)
                      .+.-+||++|=|+ |+.++...+   ...+..+  ++.+|.++         ..-+..+.+....+. -..+|  ++..|
T Consensus        95 ~~~~~IlE~GFGT-GLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G  173 (308)
T 3vyw_A           95 RKVIRILDVGFGL-GYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG  173 (308)
T ss_dssp             CSEEEEEEECCTT-SHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred             CCCcEEEEeCCCc-cHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence            3446899999995 786543221   1245554  56666532         133445555544321 01244  57889


Q ss_pred             ccccccccCC--CccEEEecccccC-ChHH-HHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          192 DIMQVKEKLG--EYDCIFLAALVGM-SKEE-KVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       192 D~~~~~~~~~--~fD~V~~aa~v~~-~~~~-k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |+.+....+.  .||++|++++-.. .++. -.++++.+++.++|||+++.-++.|
T Consensus       174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag  229 (308)
T 3vyw_A          174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSL  229 (308)
T ss_dssp             CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH
T ss_pred             hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH
Confidence            9988766553  5999999987411 1111 1689999999999999998766655

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.64  E-value=0.0085  Score=53.41  Aligned_cols=86  Identities=21%  Similarity=0.232  Sum_probs=59.1

Q ss_pred             CEEEEecc-CCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVGS-GPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGs-G~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++|.+||+ |.+|..- ..|++   .|.+|+.+|++++..+..++    .|.   .+    .+..   ......|+||++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~---~g~~V~~~~r~~~~~~~~~~----~g~---~~----~~~~---~~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD---SAHHLAAIEIAPEGRDRLQG----MGI---PL----TDGD---GWIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH---SSSEEEEECCSHHHHHHHHH----TTC---CC----CCSS---GGGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHh----cCC---Cc----CCHH---HHhcCCCEEEEc
Confidence            59999999 9777552 22333   67899999999988776554    452   11    1222   223468999987


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .-.    ..-.++++.+...++||.+++-
T Consensus        75 v~~----~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           75 LPD----NIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             SCH----HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             CCc----hHHHHHHHHHHHhCCCCCEEEE
Confidence            542    4467888899888998887664

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.64  E-value=0.00067  Score=68.30  Aligned_cols=107  Identities=17%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc------C---C--CcEEEEEeCCh---HHHHH-----------HHHHHHhcCC---
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH------L---K--STHFDNFDIDE---AANDV-----------ARQIVSSDIE---  181 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~------~---~--g~~V~~iDid~---~ai~~-----------Ar~~~~~~G~---  181 (284)
                      ++-+|+|+|-|+ |++.+.+.+..      .   +  -.+++.+|..|   +-+..           ++++++....   
T Consensus        58 ~~~~i~e~gfG~-G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  136 (689)
T 3pvc_A           58 QSCIFAETGFGT-GLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA  136 (689)
T ss_dssp             SEEEEEEECCTT-SHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred             CceEEEEecCch-HHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence            456999999995 89888776521      0   1  15799999944   44433           2244443311   


Q ss_pred             ------CCC---CeEEEEeccccccccC-----CCccEEEecccccCChHHH------HHHHHHHHhhcCCCcEEEEEec
Q 036061          182 ------FEK---RMKFVTCDIMQVKEKL-----GEYDCIFLAALVGMSKEEK------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       182 ------l~~---~I~f~~~D~~~~~~~~-----~~fD~V~~aa~v~~~~~~k------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                            +++   .++++.||+.+....+     ..||++|++.+-    +.|      .+++..+.+.++|||++...+.
T Consensus       137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~----p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  212 (689)
T 3pvc_A          137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA----PAKNPDMWNEQLFNAMARMTRPGGTFSTFTA  212 (689)
T ss_dssp             EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC----C--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred             CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC----CCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                  112   5678999998877654     469999999875    445      7899999999999999887553

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.63  E-value=0.011  Score=52.12  Aligned_cols=88  Identities=10%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.+-. .|++   .|.+|+++|.+++..+.++    +.| ...  + ...|..+.    .+.|+|+++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~----~~g-~~~--~-~~~~~~~~----~~~D~vi~av   65 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAV----ERQ-LVD--E-AGQDLSLL----QTAKIIFLCT   65 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHH----HTT-SCS--E-EESCGGGG----TTCSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHH----hCC-CCc--c-ccCCHHHh----CCCCEEEEEC
Confidence            4799999998776532 2333   5779999999998876653    346 221  2 23343332    4689999875


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      -.    .....+++.+.+.++||.+++-
T Consensus        66 ~~----~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           66 PI----QLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             CH----HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             CH----HHHHHHHHHHHhhCCCCCEEEE
Confidence            42    5567888999999999887654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.62  E-value=0.011  Score=47.53  Aligned_cols=98  Identities=7%  Similarity=0.012  Sum_probs=64.3

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-AANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDC  205 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~  205 (284)
                      ..+|+.+|+|.+|........  ..|..|+.+|.++ +..+...+   ...   ..+.++.||+.+..    ....+.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~--~~g~~V~vid~~~~~~~~~~~~---~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQ---RLG---DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHH---HHC---TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HCCCCEEEEECCChHHHHHHHH---hhc---CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            468999999977654332222  2688999999984 54433332   221   35789999987532    13567999


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.+..-    .+....+....+.+.|...++.+.
T Consensus        75 vi~~~~~----d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           75 ILALSDN----DADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EEECSSC----HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEEecCC----hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            8865431    344556667778888888888876

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.62  E-value=0.0036  Score=56.99  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=65.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ...++|.+||+|.+|-+ +...- . .|..|+.+|+++++++.+.+.+...  .-.++++. .|..    ...+.|+||.
T Consensus        10 ~~~~~V~vIG~G~MG~~-iA~~l-a-aG~~V~v~d~~~~~~~~~~~~l~~~--~~~~i~~~-~~~~----~~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRG-IAIAI-A-SKHEVVLQDVSEKALEAAREQIPEE--LLSKIEFT-TTLE----KVKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHH-HHHHH-H-TTSEEEEECSCHHHHHHHHHHSCGG--GGGGEEEE-SSCT----TGGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHH-HHHHH-H-cCCEEEEEECCHHHHHHHHHHHHHH--HhCCeEEe-CCHH----HHcCCCEEEE
Confidence            45689999999988754 22221 3 5889999999999999888862111  01245543 3332    2456899997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..  .+.+-|..++.++...  ||.+++..+
T Consensus        80 avp--e~~~vk~~l~~~l~~~--~~~Ilasnt  107 (293)
T 1zej_A           80 AVF--EDLNTKVEVLREVERL--TNAPLCSNT  107 (293)
T ss_dssp             CCC--SCHHHHHHHHHHHHTT--CCSCEEECC
T ss_pred             cCc--CCHHHHHHHHHHHhcC--CCCEEEEEC
Confidence            654  3446688899988766  888876543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.60  E-value=0.0041  Score=58.17  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=49.0

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      ++..|+|||.|+|.+|..++.+  ..+.+|++||+|+..+..-++.. .    ..+++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~--~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhh--CCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCccchh
Confidence            4589999999999999887754  23568999999999888877765 2    258999999997653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.58  E-value=0.021  Score=51.23  Aligned_cols=136  Identities=12%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCC---CCe---EEEEe-ccccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFE---KRM---KFVTC-DIMQV  196 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~---~~I---~f~~~-D~~~~  196 (284)
                      +...+++.+|+|+||+|+|.|-. .++  ..+ ..|.|.++..+-        ...+ ..   ..+   +|..+ |+++.
T Consensus        68 K~likpg~~VVDLGaAPGGWSQv-Aa~--~~~vg~V~G~vig~D~--------~~~P-~~~~~~Gv~~i~~~~G~Df~~~  135 (269)
T 2px2_A           68 RRFVQPIGKVVDLGCGRGGWSYY-AAT--MKNVQEVRGYTKGGPG--------HEEP-MLMQSYGWNIVTMKSGVDVFYK  135 (269)
T ss_dssp             TTSCCCCEEEEEETCTTSHHHHH-HTT--STTEEEEEEECCCSTT--------SCCC-CCCCSTTGGGEEEECSCCGGGS
T ss_pred             cCCCCCCCEEEEcCCCCCHHHHH-Hhh--hcCCCCceeEEEcccc--------ccCC-CcccCCCceEEEeeccCCccCC
Confidence            44568899999999999998744 333  222 234444444330        0111 11   233   55557 99863


Q ss_pred             cccCCCccEEEeccc--ccCChHHHH---HHHHHHHhhcCCCc-EEEEEecCcc-----------cc-c----cCccCCC
Q 036061          197 KEKLGEYDCIFLAAL--VGMSKEEKV---KIIKHIRKYMKDGG-VLLVRSAKGA-----------RA-F----LYPVVEK  254 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~--v~~~~~~k~---~il~~l~~~l~pGg-~lv~r~~~gl-----------r~-~----lYp~v~~  254 (284)
                      .  ...+|+|+.+..  -|...-+..   .+++-..+.|+||| .|++--.+|.           +. |    ..|+...
T Consensus       136 ~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vkvk~paSR  213 (269)
T 2px2_A          136 P--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPLSR  213 (269)
T ss_dssp             C--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSC
T ss_pred             C--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEEEECCCCC
Confidence            3  247999997642  122222222   35777779999999 9998775541           11 1    1222111


Q ss_pred             ccCCCcEEEEEecCCcceeeeE
Q 036061          255 HDLLDFELLSVFHPTNEVINSV  276 (284)
Q Consensus       255 ~dl~gfe~~~~~hP~~~v~nsv  276 (284)
                      .  ...|++.+-...+.++|+|
T Consensus       214 ~--~S~E~YlVa~~~~n~~~~v  233 (269)
T 2px2_A          214 N--SNHEMYWVSGASGNIVHAV  233 (269)
T ss_dssp             T--TCCCEEEETTCCSCHHHHH
T ss_pred             C--CCccEEEEecccCcHHHHH
Confidence            1  2367777767777766665

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.58  E-value=0.024  Score=51.86  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+.+|..||+|..|.+.............++.+|++++.++- +..+.+....+..++++..++    ...+.+.|+|++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~----~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGE----YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECC----GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCC----HHHhCCCCEEEE
Confidence            457999999998777655443312223589999999976653 455444333222466666533    233567899998


Q ss_pred             cccccC----ChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGM----SKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~----~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.++.    +..+        -.++.+.+.++ .|+|++++-+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT  123 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            876532    2111        23455555555 8999998844

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.55  E-value=0.012  Score=54.25  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..++..||..||+|..|.+...+........+++-+|++++.++- +..+.+... +..++++..++-    .++.+-|+
T Consensus         5 ~~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~~----~a~~~aDv   79 (326)
T 2zqz_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP-FTSPKKIYSAEY----SDAKDADL   79 (326)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGGGCSE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH-hcCCeEEEECCH----HHhCCCCE
Confidence            345668999999998887766544322234589999999987643 665655543 335677765442    23457899


Q ss_pred             EEeccccc----CChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALVG----MSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v~----~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++.+.++    ++..+.        .++.+.+.++ .|+|++++-+
T Consensus        80 Vii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  125 (326)
T 2zqz_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAA  125 (326)
T ss_dssp             EEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence            99887652    221111        2344444444 7999988854

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.55  E-value=0.0069  Score=55.56  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +++.+|..||+|..|.+............+|+.+|++++.++ .+..+.+... +..++++..+|    ..++.+.|+|+
T Consensus         5 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~----~~a~~~aDvVi   79 (318)
T 1y6j_A            5 KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGD----YSDVKDCDVIV   79 (318)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--C----GGGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH-hcCCeEEEECC----HHHhCCCCEEE
Confidence            346799999999888776554432222348999999987665 3555444433 23466666444    22456789999


Q ss_pred             ecccccC----ChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGM----SKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~----~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+.++.    +..+        -.++.+.+.++ .|++++++-+
T Consensus        80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (318)
T 1y6j_A           80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS  123 (318)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred             EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            8876522    1111        15666667766 7999988854

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.54  E-value=0.015  Score=53.27  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +..+|..||+|..|.+...+........+++-+|++++.++ .+..+.+... +..++++..++    ..++.+-|+|++
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~v~~~~----~~a~~~aDvVii   78 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGE----YSDCKDADLVVI   78 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECC----GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-hcCCeEEEECC----HHHhCCCCEEEE
Confidence            45799999999888776655442223458999999998776 4666666543 33567776543    233567899998


Q ss_pred             cccccCChH------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKE------------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~------------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.++..+.            --.++.+.+.++ .|+|++++-+
T Consensus        79 ~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  121 (318)
T 1ez4_A           79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA  121 (318)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence            876522111            113344444444 8999988854

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.52  E-value=0.02  Score=58.52  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----------CC--CCCCeEEEEecccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-----------IE--FEKRMKFVTCDIMQVK  197 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----------G~--l~~~I~f~~~D~~~~~  197 (284)
                      ++|..||+|.+|-. |..+|   ..|..|+-+|+++++++.+++.++..           +.  ...++++. .|    .
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a---~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~  388 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA---RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-SS----T  388 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH---TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-SC----G
T ss_pred             cEEEEEcccHHHHHHHHHHH---hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-Cc----H
Confidence            69999999987643 22333   48999999999999999998876431           10  11233332 22    2


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++.+.|+|+-+.  ..+.+-|.++++++-++++|+.+|...+
T Consensus       389 ~~l~~aDlVIEAV--~E~l~iK~~vf~~le~~~~~~aIlASNT  429 (742)
T 3zwc_A          389 KELSTVDLVVEAV--FEDMNLKKKVFAELSALCKPGAFLCTNT  429 (742)
T ss_dssp             GGGGSCSEEEECC--CSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHhhCCEEEEec--cccHHHHHHHHHHHhhcCCCCceEEecC
Confidence            2356789999763  3456899999999999999999988766

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.50  E-value=0.022  Score=51.30  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=59.9

Q ss_pred             CCCCEEEEeccCCChhHHHH-HHhhcCCCc--EEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEe-ccccccccCCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIV-MAKNHLKST--HFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTC-DIMQVKEKLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~-LA~~~~~g~--~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~f  203 (284)
                      .++++|..||+|.+|.+... |++   .|.  +|+.+|++++.++ .+.++.+... +....++... |.    ....++
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~---~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~a   76 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQ---RGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDP----EICRDA   76 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH---TTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCG----GGGTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh---CCCCCEEEEEeCChhHHHHHHHHHHhhhh-hcCCeEEEeCCCH----HHhCCC
Confidence            34579999999987765433 333   455  8999999987665 2333322222 1123444433 32    234578


Q ss_pred             cEEEeccccc----CCh--------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVG----MSK--------EEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~----~~~--------~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+|+++.-..    ++.        +...++++.+.++ .|++.++.-
T Consensus        77 D~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~  123 (319)
T 1lld_A           77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLI  123 (319)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEe
Confidence            9999876331    111        2233677777775 788877653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.49  E-value=0.024  Score=51.69  Aligned_cols=103  Identities=20%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||..||+|..|.+...+........+++-+|++++.++ .+..+.+... +..++++..+|    ..++.+.|+|++.+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~~~~~~v~~~~----~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-FAHPVWVWAGS----YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-GSCCCEEEECC----GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-hcCCeEEEECC----HHHhCCCCEEEECC
Confidence            489999999888776655442233468999999998776 3666665543 23566776544    23456789999887


Q ss_pred             cc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+    |++..+        -.++.+.+.++ .|+|++++-+
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  116 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVAT  116 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEec
Confidence            55    332222        23444555555 8999988854

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.47  E-value=0.012  Score=52.28  Aligned_cols=92  Identities=15%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .++|.+||+|.+|.+-. .|++ ...+.+|+++|++++..+.+++    .|. ..   ....|..+   ...+.|+||++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~----~g~-~~---~~~~~~~~---~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKR-DHPHYKIVGYNRSDRSRDIALE----RGI-VD---EATADFKV---FAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HCTTSEEEEECSSHHHHHHHHH----TTS-CS---EEESCTTT---TGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHh-CCCCcEEEEEcCCHHHHHHHHH----cCC-cc---cccCCHHH---hhcCCCEEEEc
Confidence            36899999998776532 2333 2337899999999988776543    452 11   12233322   22468999987


Q ss_pred             ccccCChHHHHHHHHHHHhh-cCCCcEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKY-MKDGGVLLV  238 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~-l~pGg~lv~  238 (284)
                      .-.    ..-..+++.+.+. +++|.+++.
T Consensus        74 vp~----~~~~~v~~~l~~~~l~~~~ivi~   99 (290)
T 3b1f_A           74 VPI----KKTIDFIKILADLDLKEDVIITD   99 (290)
T ss_dssp             SCH----HHHHHHHHHHHTSCCCTTCEEEC
T ss_pred             CCH----HHHHHHHHHHHhcCCCCCCEEEE
Confidence            542    3446788888888 998887663

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.45  E-value=0.014  Score=49.74  Aligned_cols=95  Identities=8%  Similarity=-0.026  Sum_probs=64.9

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~  207 (284)
                      ++|+.+|+|.+|........  ..|..|+.+|.|++.++...+   ..|     +.++.+|+++..    .....+|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L~--~~g~~v~vid~~~~~~~~l~~---~~~-----~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSML--SRKYGVVIINKDRELCEEFAK---KLK-----ATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH---HSS-----SEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---HcC-----CeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            47999999977665332222  368899999999998765332   334     478999987632    1345799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+..-    .....++....+.+.|...++.|.
T Consensus        71 ~~~~~----d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           71 ILTPR----DEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             ECCSC----HHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             EecCC----cHHHHHHHHHHHHHcCCCeEEEEE
Confidence            65331    344556667777778888888876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.42  E-value=0.014  Score=56.67  Aligned_cols=104  Identities=17%  Similarity=0.295  Sum_probs=67.4

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCc-EEEEEeCChH----HHHHHHH--------------HHHhcCCCCCCeEE
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKST-HFDNFDIDEA----ANDVARQ--------------IVSSDIEFEKRMKF  188 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~-~V~~iDid~~----ai~~Ar~--------------~~~~~G~l~~~I~f  188 (284)
                      .+-++|..||+|.+|.. |..||+  .+|. +|+++|+|++    .++.-++              ++++.- ...++++
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~-~~g~l~~   92 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVV-KAGKFEC   92 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHH-HTTCEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhc-ccCCeEE
Confidence            34579999999988865 455666  2388 9999999998    6654433              111100 0235555


Q ss_pred             EEeccccccccCCCccEEEeccccc--------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          189 VTCDIMQVKEKLGEYDCIFLAALVG--------MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       189 ~~~D~~~~~~~~~~fD~V~~aa~v~--------~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       +.| .+   .....|+||++..-.        .+...-....+.+.+.++||.+++..+
T Consensus        93 -ttd-~e---a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  147 (478)
T 3g79_A           93 -TPD-FS---RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES  147 (478)
T ss_dssp             -ESC-GG---GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -eCc-HH---HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence             334 22   234679999875322        122334667889999999999888876

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.40  E-value=0.0062  Score=57.10  Aligned_cols=111  Identities=8%  Similarity=-0.019  Sum_probs=72.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHh-------h-------cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAK-------N-------HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM  194 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~-------~-------~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~  194 (284)
                      ..+-+|+|+||+.+|-|...+..       +       ..|..+|..-|+-.-.-...-+.+.... -.++-.|+.|...
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpg  128 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEES
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecch
Confidence            34578999999987766443332       0       2456789999987666555444332211 0124578888765


Q ss_pred             c---ccccCCCccEEEecccccCCh--------------------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061          195 Q---VKEKLGEYDCIFLAALVGMSK--------------------------------EEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       195 ~---~~~~~~~fD~V~~aa~v~~~~--------------------------------~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .   -+.+.+.+|+||.+..++|-.                                .+-..+|+..++.|+|||++++.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            5   334456899999877655511                                12345699999999999999986


Q ss_pred             e
Q 036061          240 S  240 (284)
Q Consensus       240 ~  240 (284)
                      .
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.37  E-value=0.0054  Score=59.44  Aligned_cols=104  Identities=20%  Similarity=0.273  Sum_probs=68.8

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCCC---------CCCeEEEEecccc
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIEF---------EKRMKFVTCDIMQ  195 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~l---------~~~I~f~~~D~~~  195 (284)
                      ...++|..||+|.+|.. |..||+   .|.+|+++|+|++.++..++-...   -| +         ..++++ +.|..+
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~---~G~~V~~~d~~~~~v~~l~~~~~~i~e~g-l~~~l~~~~~~~~l~~-ttd~~~   80 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLAD---IGHDVFCLDVDQAKIDILNNGGVPIHEPG-LKEVIARNRSAGRLRF-STDIEA   80 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTT-HHHHHHHHHHTTCEEE-ECCHHH
T ss_pred             CCCceEEEECcCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHCCCCCcCCCC-HHHHHHHhcccCCEEE-ECCHHH
Confidence            45689999999977764 566776   788999999999988776652100   01 0         124554 233322


Q ss_pred             ccccCCCccEEEeccccc------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVG------MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~------~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         .....|+||++.--.      .+......+++.+.+.++||.+++..+
T Consensus        81 ---a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           81 ---AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ---HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ---HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence               123579999864321      022567889999999999999887765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.37  E-value=0.0069  Score=56.56  Aligned_cols=94  Identities=11%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++|.+||+|.+|.. +..|++   .|.+|+++|++++.++...+    .|.     .+ ..|..++.......|+||+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~---~G~~V~v~dr~~~~~~~l~~----~g~-----~~-~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK---GGHECVVYDLNVNAVQALER----EGI-----AG-ARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT----TTC-----BC-CSSHHHHHHHSCSSCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHH----CCC-----EE-eCCHHHHHhcCCCCCEEEE
Confidence            3579999999987765 333444   68999999999987765543    342     11 2344443333345699997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.--    ..-..+++.+...+++|.+++--+
T Consensus        88 ~vp~----~~v~~vl~~l~~~l~~g~iiId~s  115 (358)
T 4e21_A           88 MVPA----AVVDSMLQRMTPLLAANDIVIDGG  115 (358)
T ss_dssp             CSCG----GGHHHHHHHHGGGCCTTCEEEECS
T ss_pred             eCCH----HHHHHHHHHHHhhCCCCCEEEeCC
Confidence            6432    355678899999999988776543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.35  E-value=0.017  Score=58.83  Aligned_cols=99  Identities=19%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEecccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEF--------EKRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l--------~~~I~f~~~D~~~  195 (284)
                      ++|..||+|.+|.. |..+++   .|..|+.+|++++.++.+++.++..       |.+        ..++++. .|.  
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~--  386 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDY--  386 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSS--
T ss_pred             cEEEEEcCCHhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCH--
Confidence            57999999987754 233444   6889999999999998876543221       211        1245543 332  


Q ss_pred             ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ....+.|+|+.+..  .+..-|..++.++.+.++||.+++..+
T Consensus       387 --~~~~~aDlVIeaVp--e~~~vk~~v~~~l~~~~~~~~Ilasnt  427 (725)
T 2wtb_A          387 --ESFRDVDMVIEAVI--ENISLKQQIFADLEKYCPQHCILASNT  427 (725)
T ss_dssp             --GGGTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --HHHCCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence              23467899998643  344568899999999999998775543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.33  E-value=0.025  Score=52.01  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHH-HHHH---hcCCCCCCeEEEEeccccccccCCCcc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVAR-QIVS---SDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar-~~~~---~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      ...+|..||+|.+|.+...+..  ..|. .|+.+|++++.++... .+-+   ..+ ...++++. .|.    ..+.+.|
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la--~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~al~~aD   84 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLG--QKDLGDVYMFDIIEGVPQGKALDLNHCMALIG-SPAKIFGE-NNY----EYLQNSD   84 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--HTTCCEEEEECSSTTHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEECCHHHHHHHHHHHHhHhhccC-CCCEEEEC-CCH----HHHCCCC
Confidence            3469999999988775433332  2454 7999999998887532 2222   222 12355542 443    3456789


Q ss_pred             EEEecccc----cC--------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV----GM--------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v----~~--------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+.+..+    |+        +.+-+.++++.+.++. |++.+++-+
T Consensus        85 ~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t  131 (328)
T 2hjr_A           85 VVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICIT  131 (328)
T ss_dssp             EEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             EEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            99988643    22        1244778888888885 899877644

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.32  E-value=0.011  Score=54.36  Aligned_cols=104  Identities=19%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHH-HHHHH---hcCCCCCCeEEEEeccccccccCCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVA-RQIVS---SDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~A-r~~~~---~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      +.+.+|..||+|.+|.+...+..  ..|. .|+.+|++++.++.. ..+.+   .++ ...++++ +.|..+   ...+.
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la--~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~-t~d~~e---a~~~a   79 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCA--LRELADVVLYDVVKGMPEGKALDLSHVTSVVD-TNVSVRA-EYSYEA---ALTGA   79 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHH--HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTT-CCCCEEE-ECSHHH---HHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEECChhHHHHHHHHHHhhhhccC-CCCEEEE-eCCHHH---HhCCC
Confidence            44579999999987776433332  1344 799999999887763 32222   233 2345554 355432   34578


Q ss_pred             cEEEeccccc----C-----Ch--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVG----M-----SK--------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~----~-----~~--------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|++++.++    +     +.        +-+.++.+.+.++. |++.+++-+
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  132 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT  132 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence            9999887442    2     11        22788889998884 899887644

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.32  E-value=0.013  Score=55.69  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQI------------VSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ++|..||+|.+|.. +..|++   .|.+|+++|+|++.++..++-            +.+.- -..++++ +.|..+   
T Consensus         1 mkI~VIG~G~vG~~~A~~la~---~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~-~~g~l~~-t~~~~~---   72 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKK---   72 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhc-ccCceEE-eCCHHH---
Confidence            47999999988875 445665   688999999999988765541            11000 0113554 233322   


Q ss_pred             cCCCccEEEecccccCC------hHHHHHHHHHHHhhcCC---CcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMS------KEEKVKIIKHIRKYMKD---GGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~------~~~k~~il~~l~~~l~p---Gg~lv~r~  240 (284)
                      .....|+||++.--...      ...-..+++.+.+.+++   |.+++..+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S  123 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             HhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC
Confidence            12367999987532110      01145688999999999   77777654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.32  E-value=0.0063  Score=58.55  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEeccccc
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQI------------VSSDIEFEKRMKFVTCDIMQV  196 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~G~l~~~I~f~~~D~~~~  196 (284)
                      ..-||.+||.|-+|.. |..||+   .|.+|+++|+|++.++.-++-            +++.- ...++++ +.|..+ 
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~---~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~-~~g~l~~-ttd~~e-   80 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSD---FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNV-KAGRLSF-TTDLAE-   80 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHH-
T ss_pred             CceEEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhc-ccCCEEE-ECCHHH-
Confidence            4569999999977664 556777   789999999999987765541            11100 0124555 344322 


Q ss_pred             cccCCCccEEEecccccCC-------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMS-------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~-------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        .....|+||++-....+       ...-..+++.+.+.|++|.+++..+
T Consensus        81 --a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           81 --GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             --HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             --HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence              23467999987422111       1235778899999999999998877

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.29  E-value=0.029  Score=51.44  Aligned_cols=102  Identities=20%  Similarity=0.173  Sum_probs=65.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHh----cCCCCCCeEEEEeccccccccCCCcc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSS----DIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~----~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      +..+|..||+|.+|.+...+..  ..|. .|+.+|++++.++.....+.+    .+ ...++++. .|.    ..+.+.|
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la--~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~al~~aD   74 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIV--QKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY-SNCKVSGS-NTY----DDLAGAD   74 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--HTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT-CCCCEEEE-CCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC-CCcEEEEC-CCH----HHhCCCC
Confidence            3469999999988776444333  1344 699999999887754333332    23 12344432 443    3456789


Q ss_pred             EEEecccc----cCC-------------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALV----GMS-------------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v----~~~-------------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|++++.+    +++             .+-+.++.+.+.++. |++.+++-+
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  126 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVT  126 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            99988643    222             134778888888885 999887644

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.26  E-value=0.012  Score=59.74  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEec
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCD  192 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D  192 (284)
                      .+-++|.+||+|.+|.. |..+++   .|..|+.+|++++.++.+++.++.       .|.+.        .++++. .|
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d  387 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LS  387 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SS
T ss_pred             ccCCEEEEECCChhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CC
Confidence            34568999999987754 344555   688999999999999887654321       23111        124442 23


Q ss_pred             cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .    ....+.|+||.+..  .+..-|..++.++.+.++||.+++..+
T Consensus       388 ~----~~~~~aDlVIeaV~--e~~~vk~~v~~~l~~~~~~~~Ilasnt  429 (715)
T 1wdk_A          388 Y----GDFGNVDLVVEAVV--ENPKVKQAVLAEVENHVREDAILASNT  429 (715)
T ss_dssp             S----TTGGGCSEEEECCC--SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             H----HHHCCCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence            2    23456899998643  234668899999999999998776443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.26  E-value=0.0084  Score=53.06  Aligned_cols=49  Identities=18%  Similarity=0.063  Sum_probs=41.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI  180 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G  180 (284)
                      ..++..|||..||. |.|++..++   .|.+++|+|+++.+++.|+++++..+
T Consensus       210 ~~~~~~vlD~f~Gs-Gtt~~~a~~---~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          210 SNPNDLVLDCFMGS-GTTAIVAKK---LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCTTCEEEESSCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            36889999999996 677776655   78999999999999999999998766

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.25  E-value=0.048  Score=50.25  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +++.+|..||+|.+|.+............+++.+|++++.++ .|..+-+..+.+..++++..+|..    ...+.|+|+
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~----a~~~aDvVv   78 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE----DCKDADIVC   78 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG----GGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH----HhCCCCEEE
Confidence            457899999999888775543321122248999999988654 355555554422246676666642    345789999


Q ss_pred             ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++.+    ||+..+        -..+.+.+.+. .|++++++-+
T Consensus        79 i~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvt  122 (326)
T 3pqe_A           79 ICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVAT  122 (326)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcC
Confidence            88754    343322        13444555554 6888877754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.21  E-value=0.016  Score=52.31  Aligned_cols=92  Identities=12%  Similarity=-0.004  Sum_probs=60.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|+.||+|.+|......++  ..|++|+.+|.+++..+.+.    ..|.     +...  ..++...+.+.|+|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~--~~G~~V~~~d~~~~~~~~~~----~~g~-----~~~~--~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFA--ALGANVKVGARSSAHLARIT----EMGL-----VPFH--TDELKEHVKDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHH----HTTC-----EEEE--GGGHHHHSTTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH----HCCC-----eEEc--hhhHHHHhhCCCEEEE
Confidence            56899999999988887766665  36889999999987654433    3452     2221  1222333467999998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...++-.  +     ...+.|+||++++--.
T Consensus       222 ~~p~~~i~--~-----~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          222 TIPSMILN--Q-----TVLSSMTPKTLILDLA  246 (300)
T ss_dssp             CCSSCCBC--H-----HHHTTSCTTCEEEECS
T ss_pred             CCChhhhC--H-----HHHHhCCCCCEEEEEe
Confidence            76443311  1     2446899998775433

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.17  E-value=0.0034  Score=57.02  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=68.1

Q ss_pred             EEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEEEecc
Q 036061          135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCIFLAA  210 (284)
Q Consensus       135 L~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V~~aa  210 (284)
                      ++-|||.+|+-   ..   ..+.+++.+|.++++.+.=+++++.    .++++++.+|+.....    ....||+||++.
T Consensus        98 lfaGSGaLgiE---aL---S~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           98 YYPGSPYFAIN---QL---RSQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             EEECHHHHHHH---HS---CTTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             EeCCcHHHHHH---Hc---CCCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            67788755433   22   2568999999999999999988865    3589999999866433    223699999997


Q ss_pred             cccCChHHHHHHHHHHHh--hcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRK--YMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~  240 (284)
                      --+. +.+..++++.+.+  ...|+|++++-+
T Consensus       168 PYe~-k~~~~~vl~~L~~~~~r~~~Gi~v~WY  198 (283)
T 2oo3_A          168 SYER-KEEYKEIPYAIKNAYSKFSTGLYCVWY  198 (283)
T ss_dssp             CCCS-TTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCC-CcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence            4332 2456667766665  457899988864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.16  E-value=0.017  Score=53.75  Aligned_cols=99  Identities=14%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC--CCCCeEEEEeccccccccCCCc
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIE--FEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~--l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..++|..||+|.+|.+ +..|++   .|.+|+.+|++++.++..++.-..   ++.  +..++++ +.|..+   .....
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~---~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~e---a~~~a  100 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLAR---KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKA---SLEGV  100 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHT---TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHH---HHTTC
T ss_pred             cCCeEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHH---HHhcC
Confidence            3579999999987754 233444   678999999999887665542110   110  1223444 234322   23468


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+|+++.-    .....++++++...++||..++.-
T Consensus       101 DvVilaVp----~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          101 TDILIVVP----SFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             CEEEECCC----HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CEEEECCC----HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99997643    356788999999999998876543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.016  Score=52.82  Aligned_cols=92  Identities=10%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCC-cEEEEEeCChHHHHHHH---HHHHhcCCCCCCeEEEEe-ccccccccCCCcc
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKS-THFDNFDIDEAANDVAR---QIVSSDIEFEKRMKFVTC-DIMQVKEKLGEYD  204 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g-~~V~~iDid~~ai~~Ar---~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~fD  204 (284)
                      .++|.+||+|.+|.+. ..|++   .| .+|+++|++++..+.+.   +.+...| .       .. +..+.   ..+.|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~---~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g-~-------~~~s~~e~---~~~aD   89 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGG---RNAARLAAYDLRFNDPAASGALRARAAELG-V-------EPLDDVAG---IACAD   89 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCSEEEEECGGGGCTTTHHHHHHHHHHTT-C-------EEESSGGG---GGGCS
T ss_pred             CCeEEEECccHHHHHHHHHHHH---cCCCeEEEEeCCCccccchHHHHHHHHHCC-C-------CCCCHHHH---HhcCC
Confidence            4789999999877642 23333   67 89999999984222222   2223345 2       33 43332   23579


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +||++..-    ..-.+.++.+.+.++||.+++-.+
T Consensus        90 vVi~avp~----~~~~~~~~~i~~~l~~~~ivv~~s  121 (317)
T 4ezb_A           90 VVLSLVVG----AATKAVAASAAPHLSDEAVFIDLN  121 (317)
T ss_dssp             EEEECCCG----GGHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEEecCC----HHHHHHHHHHHhhcCCCCEEEECC
Confidence            99986432    333456689999999998877654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.13  E-value=0.015  Score=52.25  Aligned_cols=91  Identities=9%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|+.||+|.+|......++  ..|++|+.+|.+++..+.+.    ..|.     ++..  ..++...+.+.|+|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~--~~G~~V~~~dr~~~~~~~~~----~~g~-----~~~~--~~~l~~~l~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFA--ALGAKVKVGARESDLLARIA----EMGM-----EPFH--ISKAAQELRDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHH----HTTS-----EEEE--GGGHHHHTTTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHH----HCCC-----eecC--hhhHHHHhcCCCEEEE
Confidence            57899999999988887766665  36889999999987654432    4452     2221  1222233467999998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.-.++-  .+     ...+.|+||++++--
T Consensus       220 ~~p~~~i--~~-----~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          220 TIPALVV--TA-----NVLAEMPSHTFVIDL  243 (293)
T ss_dssp             CCSSCCB--CH-----HHHHHSCTTCEEEEC
T ss_pred             CCChHHh--CH-----HHHHhcCCCCEEEEe
Confidence            7643331  11     234578999877543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.12  E-value=0.014  Score=52.46  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++|.+||+|.+|.. +..|++   .|.+|+++|++++.++...+    .|.   .  ....|..+   .....|+||+
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g~---~--~~~~~~~e---~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLR---AGLSTWGADLNPQACANLLA----EGA---C--GAAASARE---FAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TTC---S--EEESSSTT---TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH----cCC---c--cccCCHHH---HHhcCCEEEE
Confidence            3478999999987764 233444   68899999999988776554    352   1  12333332   2346899997


Q ss_pred             cccccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKII---KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~  240 (284)
                      +..-   ...-..++   +.+.+.++||.+++-.+
T Consensus        71 ~vp~---~~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           71 LVVN---AAQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             CCSS---HHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             ECCC---HHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence            6432   12334455   67778899998887554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.12  E-value=0.054  Score=47.17  Aligned_cols=106  Identities=11%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             CCCEEEEeccC-C--Chh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-------
Q 036061          130 NPKKVAFVGSG-P--MPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-------  198 (284)
Q Consensus       130 ~~~~VL~IGsG-~--lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-------  198 (284)
                      .+++||..|++ .  +|. .+..|++   .|++|+.++.++...+...+.....+.  .++.++.+|+.+...       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE---AGARLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCCCCHHHHHHHHHH
Confidence            56899999964 1  333 3445555   799999999998888888888877762  489999999986321       


Q ss_pred             ---cCCCccEEEeccccc-----------CChHHHH-----------HHHHHHHhhcCCCcEEEEEe
Q 036061          199 ---KLGEYDCIFLAALVG-----------MSKEEKV-----------KIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ---~~~~fD~V~~aa~v~-----------~~~~~k~-----------~il~~l~~~l~pGg~lv~r~  240 (284)
                         ..+..|+++.++.+.           .+.++..           .+++.+.+.|+++|.++.-+
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence               124689988776542           1222222           36677888899889888766

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.11  E-value=0.015  Score=55.86  Aligned_cols=100  Identities=16%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEecccccc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQI------------VSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      .-++|..||+|.+|.+......  . |.+|+++|+|++.++..++-            +.+ +  ..++++. .|..+  
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La--~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~t-td~~e--  105 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIA--Q-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K--PLNFRAT-TDKHD--  105 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S--CCCEEEE-SCHHH--
T ss_pred             CCCEEEEECcCHHHHHHHHHHH--c-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c--cCCeEEE-cCHHH--
Confidence            3469999999988776443333  3 89999999999998876651            111 0  1245542 34322  


Q ss_pred             ccCCCccEEEecccccCC-------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMS-------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~-------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .....|+||++.--..+       ...-..+++.+.+ ++||.+++..+
T Consensus       106 -a~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S  153 (432)
T 3pid_A          106 -AYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS  153 (432)
T ss_dssp             -HHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS
T ss_pred             -HHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC
Confidence             23467999986432111       1234667888999 99999998876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.11  E-value=0.028  Score=42.16  Aligned_cols=71  Identities=23%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD~  205 (284)
                      ..++|+.+|+|.+|........  ..| .+|+.+|++++..+...    ..     .++++.+|..+..   ....++|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~--~~g~~~v~~~~r~~~~~~~~~----~~-----~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLK--TSSNYSVTVADHDLAALAVLN----RM-----GVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHH--HCSSEEEEEEESCHHHHHHHH----TT-----TCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CcCeEEEECCCHHHHHHHHHHH--hCCCceEEEEeCCHHHHHHHH----hC-----CCcEEEecCCCHHHHHHHHcCCCE
Confidence            4579999999977765443332  256 89999999998766554    22     4577888876421   23457999


Q ss_pred             EEeccc
Q 036061          206 IFLAAL  211 (284)
Q Consensus       206 V~~aa~  211 (284)
                      |+.++.
T Consensus        73 vi~~~~   78 (118)
T 3ic5_A           73 VISAAP   78 (118)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            997764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.10  E-value=0.03  Score=51.04  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCCc--EEEEEeCChHHHHHHHHHH-HhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKST--HFDNFDIDEAANDVARQIV-SSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g~--~V~~iDid~~ai~~Ar~~~-~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ++|..||+|.+|.+... |++   .|.  .|+.+|++++.++.....+ +... .....++...|.    ....+.|+|+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~---~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~----~~~~~aDvVi   72 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM---KGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDY----ADLKGSDVVI   72 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCG----GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEeCCH----HHhCCCCEEE
Confidence            47999999987765433 333   344  8999999998776643322 2221 112334433342    2346789999


Q ss_pred             ecccccC----Ch--------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALVGM----SK--------EEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v~~----~~--------~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ++...+.    +.        +-+.++++.+.++ .|++.+++-
T Consensus        73 iav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~  115 (319)
T 1a5z_A           73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVV  115 (319)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEe
Confidence            8875422    11        1246777777777 588887664

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.09  E-value=0.01  Score=46.27  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=58.3

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--c--cCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--E--KLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~--~~~~fD~V  206 (284)
                      .++|+.+|+|.+|........  ..|.+|+.+|.+++..+.++    ..|     ..++.+|..+..  .  ...++|+|
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~--~~g~~v~~~d~~~~~~~~~~----~~~-----~~~~~~d~~~~~~l~~~~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELH--RMGHEVLAVDINEEKVNAYA----SYA-----THAVIANATEENELLSLGIRNFEYV   74 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH--HTTCCCEEEESCHHHHHTTT----TTC-----SEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HhC-----CEEEEeCCCCHHHHHhcCCCCCCEE
Confidence            468999999977766444333  35789999999987654322    223     356778875421  1  13468999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+...  + .+....+....+.+.++ .++.+.
T Consensus        75 i~~~~~--~-~~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           75 IVAIGA--N-IQASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             EECCCS--C-HHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EECCCC--c-hHHHHHHHHHHHHcCCC-eEEEEe
Confidence            866432  1 12333445556667776 666655

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.05  E-value=0.0099  Score=55.19  Aligned_cols=89  Identities=10%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V~~  208 (284)
                      .++|.+||+|.+|.+- ..|.+   .|.+|+++|.+++..+.+++    .|.   .  . ..|..+.... ....|+|++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~---~G~~V~~~dr~~~~~~~a~~----~G~---~--~-~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHA---ANHSVFGYNRSRSGAKSAVD----EGF---D--V-SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHH----TTC---C--E-ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH----cCC---e--e-eCCHHHHHHhcccCCCEEEE
Confidence            4689999999887662 23333   67899999999998877653    562   1  1 2343322211 124699998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      +.-.    .....+++++... +||.+++
T Consensus        75 avP~----~~~~~vl~~l~~~-~~~~iv~   98 (341)
T 3ktd_A           75 AVPM----TAIDSLLDAVHTH-APNNGFT   98 (341)
T ss_dssp             CSCH----HHHHHHHHHHHHH-CTTCCEE
T ss_pred             eCCH----HHHHHHHHHHHcc-CCCCEEE
Confidence            7553    5667888888876 8886544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.01  E-value=0.044  Score=52.46  Aligned_cols=100  Identities=20%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEecccc
Q 036061          129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      ..+++.-.||.|-+|+. |..||+   .|.+|+++|+|++.++.-++            ++++.- ...+++|- .|   
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~---~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~-~~g~l~~t-td---   80 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAK---HGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL-SSGKLKVS-TT---   80 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEE-SS---
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhc-ccCceEEe-Cc---
Confidence            56789999999987765 566777   78999999999999887654            122110 01245553 23   


Q ss_pred             ccccCCCccEEEecccccC--------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          196 VKEKLGEYDCIFLAALVGM--------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~--------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ....|+||++-.-..        +...=....+.+.+.|++|.+++..+
T Consensus        81 ----~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S  129 (431)
T 3ojo_A           81 ----PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES  129 (431)
T ss_dssp             ----CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred             ----hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec
Confidence                235799997643211        11223566789999999999888877

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.98  E-value=0.064  Score=48.67  Aligned_cols=104  Identities=25%  Similarity=0.270  Sum_probs=61.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEE-EeccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++|..||+|..|.+...+........+|+.+|++++.++ .+..+-+....+....++. +.| .   ..+.+.|+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~---~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-Y---SLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-G---GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-H---HHhCCCCEEEEC
Confidence            489999999888765543321122238999999998765 3333333221011234444 334 2   244678999988


Q ss_pred             ccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+    ||+..+-        ..+.+.+.++ .|++++++-+
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs  118 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT  118 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence            754    3433221        3445566666 7899988866

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.95  E-value=0.029  Score=50.95  Aligned_cols=98  Identities=10%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEE-----EeccccccccCC
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F-EKRMKFV-----TCDIMQVKEKLG  201 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l-~~~I~f~-----~~D~~~~~~~~~  201 (284)
                      ..++|+.||+|.+|.. +..|++   .|..|+.+ .+++.++..++.    |. . .....+.     +.|.    ....
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~---~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~----~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLAR---AGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDP----SAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHH---TTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCG----GGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHH---CCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCH----HHcC
Confidence            4679999999977743 333444   67899999 998877666542    31 0 0011111     1222    1235


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      .+|+|+++.-.    ..-..+++.+...++|+..++.- .+|+
T Consensus        86 ~~D~vilavk~----~~~~~~l~~l~~~l~~~~~iv~~-~nGi  123 (318)
T 3hwr_A           86 GADLVLFCVKS----TDTQSAALAMKPALAKSALVLSL-QNGV  123 (318)
T ss_dssp             TCSEEEECCCG----GGHHHHHHHHTTTSCTTCEEEEE-CSSS
T ss_pred             CCCEEEEEccc----ccHHHHHHHHHHhcCCCCEEEEe-CCCC
Confidence            79999986432    35578899999999998876543 3554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=95.92  E-value=0.0033  Score=57.76  Aligned_cols=98  Identities=8%  Similarity=0.010  Sum_probs=59.0

Q ss_pred             cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCC
Q 036061          126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGE  202 (284)
Q Consensus       126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~  202 (284)
                      ....++++||..|+ |++|..++.+|+ ...+.+|++++ +++..+.+    + +|. ..-+. ...|..+...  ..+.
T Consensus       138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~-~~g~~~V~~~~-~~~~~~~~----~-~ga-~~~~~-~~~~~~~~~~~~~~~g  208 (349)
T 4a27_A          138 ANLREGMSVLVHSAGGGVGQAVAQLCS-TVPNVTVFGTA-STFKHEAI----K-DSV-THLFD-RNADYVQEVKRISAEG  208 (349)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHT-TSTTCEEEEEE-CGGGHHHH----G-GGS-SEEEE-TTSCHHHHHHHHCTTC
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCcEEEEeC-CHHHHHHH----H-cCC-cEEEc-CCccHHHHHHHhcCCC
Confidence            35688999999998 899999999998 34468999998 55443333    2 562 11111 1111111111  1146


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||-+..-        ..++...+.|++||++++-.
T Consensus       209 ~Dvv~d~~g~--------~~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          209 VDIVLDCLCG--------DNTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEEEECC---------------CTTEEEEEEEEEEC
T ss_pred             ceEEEECCCc--------hhHHHHHHHhhcCCEEEEEC
Confidence            9999865431        12367889999999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.91  E-value=0.036  Score=47.59  Aligned_cols=94  Identities=11%  Similarity=0.094  Sum_probs=62.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~f  203 (284)
                      ...++|+.+|+|.+|..   +|+.+ ..|. |+.+|.|++.++.++     .|     +.++.+|+++..    ......
T Consensus         7 ~~~~~viI~G~G~~G~~---la~~L~~~g~-v~vid~~~~~~~~~~-----~~-----~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            7 AKSRHVVICGWSESTLE---CLRELRGSEV-FVLAEDENVRKKVLR-----SG-----ANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             ---CEEEEESCCHHHHH---HHHHSTTSEE-EEEESCGGGHHHHHH-----TT-----CEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCCCEEEEECCChHHHH---HHHHHHhCCe-EEEEECCHHHHHHHh-----cC-----CeEEEcCCCCHHHHHhcCcchh
Confidence            34579999999976544   44432 3467 999999998875543     23     688999987532    135678


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|+.+..-    .+....+....+.+.|+..++.|.
T Consensus        73 d~vi~~~~~----d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           73 RAVIVDLES----DSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             SEEEECCSC----HHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             cEEEEcCCC----cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            998865331    334445566677789988888875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.91  E-value=0.019  Score=55.48  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=65.4

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEecccccc
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQI------------VSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      .++|..||+|.+|.+ |..|++ ..+|.+|+++|++++.++..++-            +.+.  ...++++ +.|..+  
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~-~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~--~~~~l~~-t~~~~~--   82 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAH-KCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA--RGRNLFF-SSDIPK--   82 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEEE-ESCHHH--
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh--hcCCEEE-ECCHHH--
Confidence            369999999988875 555666 23478999999999987765431            1100  0123444 233222  


Q ss_pred             ccCCCccEEEecccccC-----------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGM-----------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~-----------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .....|+||++.--..           +...-..+++.+.+.+++|.+++..+
T Consensus        83 -~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           83 -AIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             -HHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             -HhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence             1235799998742211           11236778899999999998888755

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.90  E-value=0.029  Score=51.16  Aligned_cols=102  Identities=13%  Similarity=0.228  Sum_probs=63.1

Q ss_pred             CCCCEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .+..+|..||+|.+|. .+..++. ......|+-+|+++++...+..+.+...   .+++. ++|.    .++.+.|+|+
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~-~g~~~ev~L~Di~~~~~g~a~dl~~~~~---~~i~~-t~d~----~~l~~aD~Vi   82 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISA-KGIADRLVLLDLSEGTKGATMDLEIFNL---PNVEI-SKDL----SASAHSKVVI   82 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECCC-----CHHHHHHHTC---TTEEE-ESCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEcCCcchHHHHHHHhhhcC---CCeEE-eCCH----HHHCCCCEEE
Confidence            4457999999997663 2333444 1234489999999987777777776322   37776 3553    3456789999


Q ss_pred             eccccc---C--------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVG---M--------SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~---~--------~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .++.++   |        +.+-+.++++.+.++. |++++++-+
T Consensus        83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s  125 (303)
T 2i6t_A           83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS  125 (303)
T ss_dssp             ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence            887432   1        1133678888888885 999976643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.88  E-value=0.052  Score=50.10  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------------------CCCCeEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-------------------FEKRMKFV  189 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-------------------l~~~I~f~  189 (284)
                      .+...|+.+||| +-..+..|.. ..++.++.-||. |+.++.-++.+...+.                   ..++.+++
T Consensus        96 ~~~~qVV~LGaG-lDTr~~RL~~-~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v  172 (334)
T 1rjd_A           96 NEKVQVVNLGCG-SDLRMLPLLQ-MFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLA  172 (334)
T ss_dssp             CSSEEEEEETCT-TCCTHHHHHH-HCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEE
T ss_pred             CCCcEEEEeCCC-CccHHHHhcC-cCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEE
Confidence            456899999999 3445555654 235677777777 9999999999887521                   13689999


Q ss_pred             Eeccccccc------cC---CCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          190 TCDIMQVKE------KL---GEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       190 ~~D~~~~~~------~~---~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      .+|+.+...      ..   +...+++.... .=++.+.-.++++.+.+.. |||.++
T Consensus       173 ~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          173 ACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             ECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred             ecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence            999987422      11   22344443332 2557788889999999987 666654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.86  E-value=0.036  Score=48.81  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      ++|.+||+|.+|..-.....  . |.+|+.+|++++..+..++.    |.   .  ..  +..+   ...+.|+|+++.-
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~--~-g~~V~~~~~~~~~~~~~~~~----g~---~--~~--~~~~---~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA--R-RFPTLVWNRTFEKALRHQEE----FG---S--EA--VPLE---RVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH--T-TSCEEEECSSTHHHHHHHHH----HC---C--EE--CCGG---GGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh--C-CCeEEEEeCCHHHHHHHHHC----CC---c--cc--CHHH---HHhCCCEEEEeCC
Confidence            47999999998865332222  4 88999999999877665442    42   1  11  1112   1246899997643


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      -   ...-..+++.+.+.+++|..++.-+
T Consensus        65 ~---~~~~~~v~~~l~~~l~~~~~vv~~s   90 (289)
T 2cvz_A           65 T---TREVYEVAEALYPYLREGTYWVDAT   90 (289)
T ss_dssp             S---HHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred             C---hHHHHHHHHHHHhhCCCCCEEEECC
Confidence            2   1234567888888899988777543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.83  E-value=0.041  Score=49.71  Aligned_cols=99  Identities=15%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCC--cEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKS--THFDNFDIDEAANDVARQ-IVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g--~~V~~iDid~~ai~~Ar~-~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ++|..||+|.+|.+... |++   .|  .+|+.+|++++.++.... +-+....+..++++...|.    ....+.|+|+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~---~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~----~~~~~aDvVi   74 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA---QGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH----HHhCCCCEEE
Confidence            48999999987765332 333   34  689999999987754433 2222211123455544553    2346789999


Q ss_pred             ecccccCC----h------------HHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALVGMS----K------------EEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v~~~----~------------~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ++.-....    +            +-..++++.+.++ .|++.+++
T Consensus        75 iav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~  120 (309)
T 1hyh_A           75 STLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVV  120 (309)
T ss_dssp             ECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             EecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE
Confidence            87654110    0            1135677777776 47888766

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.81  E-value=0.026  Score=49.43  Aligned_cols=91  Identities=9%  Similarity=0.143  Sum_probs=58.7

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +.+|..||+|.+|..-. .+++   .|.+ |+.+|++++..+...+   ..|.     .+ ..|..+   ...+.|+|++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~---~g~~~v~~~~~~~~~~~~~~~---~~g~-----~~-~~~~~~---~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR---KGFRIVQVYSRTEESARELAQ---KVEA-----EY-TTDLAE---VNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH---HTCCEEEEECSSHHHHHHHHH---HTTC-----EE-ESCGGG---SCSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH---CCCeEEEEEeCCHHHHHHHHH---HcCC-----ce-eCCHHH---HhcCCCEEEE
Confidence            46899999997765422 2333   4666 8999999987665443   4452     22 234332   2346899998


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.--    ..-.++++.+.+.+++|..++--+
T Consensus        75 av~~----~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           75 SLKD----SAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             CCCH----HHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             ecCH----HHHHHHHHHHHhhcCCCcEEEECC
Confidence            6542    334678888888888887665443

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.80  E-value=0.047  Score=52.12  Aligned_cols=77  Identities=14%  Similarity=0.033  Sum_probs=51.3

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC-ccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE-YDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~-fD~V~~  208 (284)
                      .+++|++||.|..|+++..+..  ..|.+|++.|..+.......+.+++.|     |++..+...+  ..+.. +|+|+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~--~~G~~V~~~D~~~~~~~~~~~~L~~~g-----i~~~~g~~~~--~~~~~~~d~vv~   78 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLA--KLGAIVTVNDGKPFDENPTAQSLLEEG-----IKVVCGSHPL--ELLDEDFCYMIK   78 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHH--HTTCEEEEEESSCGGGCHHHHHHHHTT-----CEEEESCCCG--GGGGSCEEEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEeCCcccCChHHHHHHhCC-----CEEEECCChH--HhhcCCCCEEEE
Confidence            5789999999999998766554  489999999996532111223445556     4676665422  11234 999998


Q ss_pred             cccccCC
Q 036061          209 AALVGMS  215 (284)
Q Consensus       209 aa~v~~~  215 (284)
                      +..+..+
T Consensus        79 spgi~~~   85 (451)
T 3lk7_A           79 NPGIPYN   85 (451)
T ss_dssp             CTTSCTT
T ss_pred             CCcCCCC
Confidence            8877443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.80  E-value=0.027  Score=54.72  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .++|.+||.|.+|.+ +..|++   .|.+|+++|++++.++...+   . |....++.. +.+..++...+...|+||++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~---~-g~~g~~i~~-~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLA---N-EAKGTKVVG-AQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHH---T-TTTTSSCEE-CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEEChhHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHh---c-ccCCCceec-cCCHHHHHhhccCCCEEEEe
Confidence            368999999988765 334444   68899999999988766544   2 211123322 24444444444468999976


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...   ...-..+++.+...|+||.+++--+
T Consensus        76 Vp~---~~~v~~vl~~l~~~L~~g~iIId~s  103 (484)
T 4gwg_A           76 VKA---GQAVDDFIEKLVPLLDTGDIIIDGG  103 (484)
T ss_dssp             SCS---SHHHHHHHHHHGGGCCTTCEEEECS
T ss_pred             cCC---hHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            432   1344568899999999998776543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.77  E-value=0.012  Score=56.55  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             cchhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061          109 YGNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM  186 (284)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I  186 (284)
                      |+|.....+--...+.+..  ...+++|+.+|.|++|......++  ..|++|+.+|+||.....|.    ..|.     
T Consensus       196 fDn~yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lr--a~Ga~Viv~D~dp~ra~~A~----~~G~-----  264 (435)
T 3gvp_A          196 FDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALK--AMGSIVYVTEIDPICALQAC----MDGF-----  264 (435)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHH----HTTC-----
T ss_pred             hhhhhhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHH--HCCCEEEEEeCChhhhHHHH----HcCC-----
Confidence            3555444444444444442  358899999999999988887777  47899999999997544433    3442     


Q ss_pred             EEEEeccccccccCCCccEEEecccccCChHHHHHHH-HHHHhhcCCCcEEEEEecCc
Q 036061          187 KFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKII-KHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       187 ~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il-~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ++  .+.   ...+...|+|+.+...      + .++ .+..+.||+|++|+ ..++|
T Consensus       265 ~v--~~L---eeal~~ADIVi~atgt------~-~lI~~e~l~~MK~gailI-Nvgrg  309 (435)
T 3gvp_A          265 RL--VKL---NEVIRQVDIVITCTGN------K-NVVTREHLDRMKNSCIVC-NMGHS  309 (435)
T ss_dssp             EE--CCH---HHHTTTCSEEEECSSC------S-CSBCHHHHHHSCTTEEEE-ECSST
T ss_pred             Ee--ccH---HHHHhcCCEEEECCCC------c-ccCCHHHHHhcCCCcEEE-EecCC
Confidence            22  233   2334578999985321      1 122 25667899998764 44555

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.77  E-value=0.035  Score=50.44  Aligned_cols=96  Identities=19%  Similarity=0.252  Sum_probs=60.3

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC------CCC--CeEEEEeccccccccCC
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE------FEK--RMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~------l~~--~I~f~~~D~~~~~~~~~  201 (284)
                      .++|+.||+|.+|..- ..|++   .|.+|+.+|.+++.++..++.   .|.      ...  ++.....|..+   ...
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   74 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDR---GAIIAEGPGLAGTAHPDLLTSDIGL---AVK   74 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHH---TSEEEESSSCCEEECCSEEESCHHH---HHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc---CCeEEeccccccccccceecCCHHH---HHh
Confidence            3699999999776442 33444   678999999999877665542   120      000  01011222222   134


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .+|+|+++.-.    ..-.++++.+.+.+++|..++.-
T Consensus        75 ~~D~vi~~v~~----~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           75 DADVILIVVPA----IHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TCSEEEECSCG----GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCEEEEeCCc----hHHHHHHHHHHHhCCCCCEEEEc
Confidence            78999987543    33367889999999999877665

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.76  E-value=0.068  Score=49.25  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=64.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+.+|..||+|.+|.+............+++.+|++++.++ .|..+.+... +...+++..+|.    .+..+.|+|+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~~~~~i~~~~~----~a~~~aDiVv   81 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP-FTSPKKIYSAEY----SDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh-hcCCcEEEECcH----HHhcCCCEEE
Confidence            567899999999888775544331222348999999987544 4555554443 224667666553    2356789999


Q ss_pred             ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+.+    ||+..+        -.++.+.+.++ .|++++++-+
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvt  125 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAA  125 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTT-TCCSEEEECS
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence            88754    232222        13455555554 6889887754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.76  E-value=0.017  Score=51.73  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCc---EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKST---HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~---~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .++|.+||+|.+|.+-. .|++   .|.   +|+.+|++++..+..++   +.|     +++ ..|..+   ...+.|+|
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~---~g~~~~~V~v~dr~~~~~~~l~~---~~g-----i~~-~~~~~~---~~~~aDvV   67 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIA---NGYDPNRICVTNRSLDKLDFFKE---KCG-----VHT-TQDNRQ---GALNADVV   67 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHH---TTCCGGGEEEECSSSHHHHHHHH---TTC-----CEE-ESCHHH---HHSSCSEE
T ss_pred             CCEEEEEcccHHHHHHHHHHHH---CCCCCCeEEEEeCCHHHHHHHHH---HcC-----CEE-eCChHH---HHhcCCeE
Confidence            36899999998775422 2333   344   89999999987665544   445     233 233322   23468999


Q ss_pred             EecccccCChHHHHHHHHHHHhh-cCCCcEEEEEecCcc
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKY-MKDGGVLLVRSAKGA  244 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~-l~pGg~lv~r~~~gl  244 (284)
                      |++.-    +....++++++... ++++..++ ....|+
T Consensus        68 ilav~----p~~~~~vl~~l~~~~l~~~~iii-S~~agi  101 (280)
T 3tri_A           68 VLAVK----PHQIKMVCEELKDILSETKILVI-SLAVGV  101 (280)
T ss_dssp             EECSC----GGGHHHHHHHHHHHHHTTTCEEE-ECCTTC
T ss_pred             EEEeC----HHHHHHHHHHHHhhccCCCeEEE-EecCCC
Confidence            98753    36778999999998 88776554 333443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.76  E-value=0.03  Score=50.89  Aligned_cols=92  Identities=13%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             CCCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++|.+||+|.+|..- ..|++   .|.+|+++|++++..+...+    .|     +++ ..|..+.   ....|+||+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~l~~----~g-----~~~-~~~~~e~---~~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCE---AGYALQVWNRTPARAASLAA----LG-----ATI-HEQARAA---ARDADIVVS   93 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT----TT-----CEE-ESSHHHH---HTTCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHH----CC-----CEe-eCCHHHH---HhcCCEEEE
Confidence            45799999999988653 23444   68899999999987665433    24     232 2333332   246799997


Q ss_pred             cccccCChHHHHHHHH--HHHhhcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIK--HIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~--~l~~~l~pGg~lv~r~  240 (284)
                      +..-   ...-..++.  .+.+.+++|.+++-.+
T Consensus        94 ~vp~---~~~~~~v~~~~~~~~~l~~~~~vi~~s  124 (320)
T 4dll_A           94 MLEN---GAVVQDVLFAQGVAAAMKPGSLFLDMA  124 (320)
T ss_dssp             CCSS---HHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred             ECCC---HHHHHHHHcchhHHhhCCCCCEEEecC
Confidence            6431   234455665  6778899998877655

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.75  E-value=0.0049  Score=53.83  Aligned_cols=87  Identities=22%  Similarity=0.273  Sum_probs=55.4

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCc----EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKST----HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~----~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ++|.+||+|.+|.+- ..|++   .|.    +|+.+|++++..+...+   +.|.     ++ ..|..+.   ..+.|+|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~---~g~~~~~~V~~~~r~~~~~~~~~~---~~g~-----~~-~~~~~e~---~~~aDvV   67 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN---KNIVSSNQIICSDLNTANLKNASE---KYGL-----TT-TTDNNEV---AKNADIL   67 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH---TTSSCGGGEEEECSCHHHHHHHHH---HHCC-----EE-CSCHHHH---HHHCSEE
T ss_pred             CeEEEECccHHHHHHHHHHHh---CCCCCCCeEEEEeCCHHHHHHHHH---HhCC-----EE-eCChHHH---HHhCCEE
Confidence            589999999877542 22333   454    89999999987665543   3452     22 2233222   2357999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      |++.-    .....++++++.+.++||..++
T Consensus        68 ilav~----~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           68 ILSIK----PDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             EECSC----TTTHHHHC---CCSSCTTCEEE
T ss_pred             EEEeC----HHHHHHHHHHHHhhcCCCCEEE
Confidence            98752    3667788999999999988766

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.73  E-value=0.053  Score=49.20  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             CCCEEEEeccCCChhHHHH-HHhhcCCCc-EEEEEeCChHHHHHH-HHHHHh---cCCCCCCeEEEEeccccccccCCCc
Q 036061          130 NPKKVAFVGSGPMPLTSIV-MAKNHLKST-HFDNFDIDEAANDVA-RQIVSS---DIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~-LA~~~~~g~-~V~~iDid~~ai~~A-r~~~~~---~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..++|..||+|.+|.+... +++   .|. .|+.+|++++.++.. ..+...   .+ ...+++.. .|.    ....+.
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~---~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~a~~~a   73 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGK---DNLADVVLFDIAEGIPQGKALDITHSMVMFG-STSKVIGT-DDY----ADISGS   73 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---HTCCEEEEECSSSSHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh---CCCceEEEEeCCchHHHHHHHHHHhhhhhcC-CCcEEEEC-CCH----HHhCCC
Confidence            4579999999987765333 333   455 899999999877752 222221   22 12345432 343    234578


Q ss_pred             cEEEecccc----cCC--------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV----GMS--------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v----~~~--------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+.+..+    +++        .+.+.++++.+.++ .|++++++-+
T Consensus        74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~s  121 (317)
T 2ewd_A           74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICIT  121 (317)
T ss_dssp             SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence            999988733    111        24467888888888 5788776644

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.70  E-value=0.14  Score=44.78  Aligned_cols=104  Identities=14%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCC------------hHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDID------------EAANDVARQIVSSDIEFEKRMKFVTCDIM  194 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid------------~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~  194 (284)
                      .+++||..|++ .|+.   +..|++   .|++|+.+|++            .+.++.+.+.+...|   .++.++.+|+.
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~---~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAE---EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---RKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---SCEEEEECCTT
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHH---CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC---CceEEEEccCC
Confidence            56899999986 3443   333444   79999999998            777777777676666   48999999998


Q ss_pred             cccc----------cCCCccEEEeccccc-----CChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKE----------KLGEYDCIFLAALVG-----MSKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~----------~~~~fD~V~~aa~v~-----~~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...          ..+..|+++.++.+.     .+.++.           ..+.+.+.+.|+++|.++.-+
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            6321          224789999777542     222332           345677888888888887765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.65  E-value=0.089  Score=46.94  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             CCCEEEEeccC---CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-------
Q 036061          130 NPKKVAFVGSG---PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-------  198 (284)
Q Consensus       130 ~~~~VL~IGsG---~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-------  198 (284)
                      .+++||..|++   .+|. .+..|++   .|++|+.+|++++..+...+..+..|    ++.++.+|+.+...       
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCA---QGAEVALTYLSETFKKRVDPLAESLG----VKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHHHT----CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHH---CCCEEEEEeCChHHHHHHHHHHHhcC----CeEEEEcCCCCHHHHHHHHHH
Confidence            46789999974   2442 3455665   79999999999988787778777766    36889999986321       


Q ss_pred             ---cCCCccEEEeccccc-----------CChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ---KLGEYDCIFLAALVG-----------MSKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ---~~~~fD~V~~aa~v~-----------~~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ..+..|+++.++.+.           .+.++.           ..+.+.+.+.|+++|.++.-+
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence               225789999777542           222222           345667788888888888765

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.64  E-value=0.12  Score=44.79  Aligned_cols=106  Identities=22%  Similarity=0.293  Sum_probs=70.9

Q ss_pred             CCCEEEEecc-CC-ChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--------
Q 036061          130 NPKKVAFVGS-GP-MPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------  198 (284)
Q Consensus       130 ~~~~VL~IGs-G~-lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------  198 (284)
                      .+++||..|+ |. +|.. +..|++   .|++|+.+|.+++..+...+.++..+  ..++.++.+|+.+...        
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALL---EGADVVISDYHERRLGETRDQLADLG--LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTC--SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH---CCCEEEEecCCHHHHHHHHHHHHhcC--CCceEEEEeCCCCHHHHHHHHHHH
Confidence            5789999998 63 5543 334555   79999999999998888777776655  2589999999986321        


Q ss_pred             --cCCCccEEEeccccc-------CChHHH-----------HHHHHHHHhhcC---CCcEEEEEe
Q 036061          199 --KLGEYDCIFLAALVG-------MSKEEK-----------VKIIKHIRKYMK---DGGVLLVRS  240 (284)
Q Consensus       199 --~~~~fD~V~~aa~v~-------~~~~~k-----------~~il~~l~~~l~---pGg~lv~r~  240 (284)
                        ..+..|+++.++.+.       .+.++.           ..+.+.+.+.|+   .+|.++.-+
T Consensus        96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s  160 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNA  160 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEEC
T ss_pred             HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence              124689999777542       122222           234455556654   567776654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.61  E-value=0.038  Score=49.57  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .++|.+||+|.+|..- ..|+   ..|.+|+++|++++.++..++    .|     +++ +.|..++   .. .|+||++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~---~~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~---~~-aDvvi~~   77 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMT---EWPGGVTVYDIRIEAMTPLAE----AG-----ATL-ADSVADV---AA-ADLIHIT   77 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHT---TSTTCEEEECSSTTTSHHHHH----TT-----CEE-CSSHHHH---TT-SSEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHH---HCCCeEEEEeCCHHHHHHHHH----CC-----CEE-cCCHHHH---Hh-CCEEEEE
Confidence            4689999999988652 2233   368899999999988776554    34     232 2333332   23 7999976


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..-   ...-..+++.+.+.++||.+++-.+
T Consensus        78 vp~---~~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           78 VLD---DAQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             CSS---HHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             CCC---hHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            431   2344567899999999998887655

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.58  E-value=0.081  Score=46.32  Aligned_cols=106  Identities=12%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CCCEEEEeccC---CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSG---PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG---~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      .++.++.-|++   -+|. .|..||+   .|++|+..|++++..+.+.+.+++.+.  .++.++.+|+.+..        
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~---~Ga~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQ---LGAKLVFTYRKERSRKELEKLLEQLNQ--PEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHGGGTC--SSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEccCCCHHHHHHHHHH
Confidence            57889998842   1444 4666777   899999999999999999998888763  57899999997632        


Q ss_pred             --ccCCCccEEEeccccc-----------CChHHHH-----------HHHHHHHhhcCCCcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALVG-----------MSKEEKV-----------KIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v~-----------~~~~~k~-----------~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...+..|+++.++.+.           .+.++..           ...+...++++.||.++.-+
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence              2346789988765431           1112211           12244567888999887755

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.53  E-value=0.075  Score=51.58  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             CCEEEEeccCCChhHH---HHHHh-hcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEE-EeccccccccCCCc
Q 036061          131 PKKVAFVGSGPMPLTS---IVMAK-NHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFV-TCDIMQVKEKLGEY  203 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta---i~LA~-~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~-~~D~~~~~~~~~~f  203 (284)
                      ..+|..||+|.+|.+.   ..|++ ...++.+|+-+|++++.++.+.....+.  + .....++. +.|..   ..+.+.
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~-~~~~~~I~~ttD~~---eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE-VGADLKFEKTMNLD---DVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH-TTCCCEEEEESCHH---HHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCCCcEEEEECCHH---HHhCCC
Confidence            4699999999855443   24543 1234889999999999888776665442  1 11234444 23432   234578


Q ss_pred             cEEEeccc
Q 036061          204 DCIFLAAL  211 (284)
Q Consensus       204 D~V~~aa~  211 (284)
                      |+|++++.
T Consensus        79 D~VIiaag   86 (480)
T 1obb_A           79 DFVINTAM   86 (480)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.52  E-value=0.066  Score=46.39  Aligned_cols=105  Identities=11%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CCCCEEEEeccC---CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------
Q 036061          129 VNPKKVAFVGSG---PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------  198 (284)
Q Consensus       129 ~~~~~VL~IGsG---~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------  198 (284)
                      .++++||..|++   .+|. .+..|++   .|++|+.+|.++...+..+++....|    ++.++.+|+.+...      
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKR---EGAELAFTYVGDRFKDRITEFAAEFG----SELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHH---cCCCEEEEecchhhHHHHHHHHHHcC----CcEEEECCCCCHHHHHHHHH
Confidence            577899999953   2343 2344555   79999999999887777777777665    47899999986321      


Q ss_pred             ----cCCCccEEEeccccc------------CChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ----KLGEYDCIFLAALVG------------MSKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ----~~~~fD~V~~aa~v~------------~~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ..+..|+++.++.+.            .+.++.           ..+.+.+.+.|+++|.++.-+
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence                235789999777542            233332           345667778888888877765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.52  E-value=0.093  Score=47.84  Aligned_cols=73  Identities=8%  Similarity=0.021  Sum_probs=47.9

Q ss_pred             CCCEEEEeccCCChhHH--HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccE
Q 036061          130 NPKKVAFVGSGPMPLTS--IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~ta--i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~  205 (284)
                      ..++|.+||-|..|+++  .+|++   .|++|++.|..+..-  ..+.+++.|     +++..+.-.   ..+  .++|+
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~---~G~~V~~~D~~~~~~--~~~~L~~~g-----i~v~~g~~~---~~l~~~~~d~   69 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKE---AGFEVSGCDAKMYPP--MSTQLEALG-----IDVYEGFDA---AQLDEFKADV   69 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHH---TTCEEEEEESSCCTT--HHHHHHHTT-----CEEEESCCG---GGGGSCCCSE
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHh---CCCEEEEEcCCCCcH--HHHHHHhCC-----CEEECCCCH---HHcCCCCCCE
Confidence            45799999999999973  45555   899999999974310  122344455     466655322   122  36899


Q ss_pred             EEecccccCC
Q 036061          206 IFLAALVGMS  215 (284)
Q Consensus       206 V~~aa~v~~~  215 (284)
                      |+.+..+..+
T Consensus        70 vV~Spgi~~~   79 (326)
T 3eag_A           70 YVIGNVAKRG   79 (326)
T ss_dssp             EEECTTCCTT
T ss_pred             EEECCCcCCC
Confidence            9988877443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.52  E-value=0.017  Score=55.76  Aligned_cols=113  Identities=12%  Similarity=-0.023  Sum_probs=73.3

Q ss_pred             CcchhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 036061          108 YYGNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKR  185 (284)
Q Consensus       108 y~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~  185 (284)
                      -|+|+..+.+--...+.+..  ...+++|+.+|.|.+|......++  ..|++|+.+|+||.....|.    ..|.    
T Consensus       222 ~fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lr--afGa~Viv~d~dp~~a~~A~----~~G~----  291 (464)
T 3n58_A          222 KFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLA--GAGARVKVTEVDPICALQAA----MDGF----  291 (464)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHH----HTTC----
T ss_pred             hhhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHH--HCCCEEEEEeCCcchhhHHH----hcCc----
Confidence            36777766655555555442  468899999999999988877777  47999999999997543332    3452    


Q ss_pred             eEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          186 MKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       186 I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                       ++  .+..+   .+...|+|+.+..-      +.-+-.+..+.||||++|+ ..++|
T Consensus       292 -~v--v~LeE---lL~~ADIVv~atgt------~~lI~~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          292 -EV--VTLDD---AASTADIVVTTTGN------KDVITIDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             -EE--CCHHH---HGGGCSEEEECCSS------SSSBCHHHHHHSCTTEEEE-ECSSS
T ss_pred             -ee--ccHHH---HHhhCCEEEECCCC------ccccCHHHHhcCCCCeEEE-EcCCC
Confidence             22  23322   23468999865321      1111246667899999875 44554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.48  E-value=0.11  Score=47.95  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEE-EeccccccccCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~  207 (284)
                      +..+|..||+|.+|.+..........-..|+.+|++++.++ .+..+.+... .....++. ++|.    .++.+.|+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~-~~~~~~i~~t~d~----~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL-FLHTAKIVSGKDY----SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG-GSCCSEEEEESSS----CSCSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh-cccCCeEEEcCCH----HHhCCCCEEE
Confidence            56899999999888765543321122238999999998654 3444444322 11222333 3443    2366789999


Q ss_pred             ecccc----cCCh--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSK--------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~--------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+.+    ||+.        +-..++.+.+.++ .|+|.+++-+
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt  138 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP  138 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence            87643    3332        3356777888888 8999887755

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.45  E-value=0.025  Score=50.24  Aligned_cols=89  Identities=18%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|..||+|.+|..-. .|++   .|.+|+.+|++++..+..++    .|.     ++ ..|..+.   ....|+|+++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~~----~g~-----~~-~~~~~~~---~~~~D~vi~~v   69 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVSDRNPEAIADVIA----AGA-----ET-ASTAKAI---AEQCDVIITML   69 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TTC-----EE-CSSHHHH---HHHCSEEEECC
T ss_pred             ceEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHH----CCC-----ee-cCCHHHH---HhCCCEEEEEC
Confidence            5899999998886532 2333   57899999999987765544    252     22 2233222   23589999764


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEEE
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVR  239 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r  239 (284)
                      --   ...-..++   +.+.+.++||..++--
T Consensus        70 ~~---~~~~~~~~~~~~~l~~~l~~~~~vv~~   98 (299)
T 1vpd_A           70 PN---SPHVKEVALGENGIIEGAKPGTVLIDM   98 (299)
T ss_dssp             SS---HHHHHHHHHSTTCHHHHCCTTCEEEEC
T ss_pred             CC---HHHHHHHHhCcchHhhcCCCCCEEEEC
Confidence            31   23344566   6777889999877543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.43  E-value=0.21  Score=44.48  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             CCCCEEEEeccCC---Chh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------
Q 036061          129 VNPKKVAFVGSGP---MPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------  198 (284)
Q Consensus       129 ~~~~~VL~IGsG~---lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------  198 (284)
                      -.+++||..|++.   +|. .+..|++   .|++|+.++.+++..+...++....|    ++.++.+|+.+...      
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAARE---AGAELAFTYQGDALKKRVEPLAEELG----AFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHH---TTCEEEEEECSHHHHHHHHHHHHHHT----CEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHHHhcC----CceEEECCCCCHHHHHHHHH
Confidence            4578999999642   333 3445555   79999999999887777777777665    58899999986321      


Q ss_pred             ----cCCCccEEEecccccC-----------ChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ----KLGEYDCIFLAALVGM-----------SKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ----~~~~fD~V~~aa~v~~-----------~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ..+..|+++.++.+..           +.++.           ..+.+.+.+.|+++|.++.-+
T Consensus       102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence                2357899997775421           22222           345677888888889888765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.41  E-value=0.045  Score=54.69  Aligned_cols=111  Identities=18%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc------C---C--CcEEEEEeC---ChHHHHHH-----------HHHHHhcCC---
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH------L---K--STHFDNFDI---DEAANDVA-----------RQIVSSDIE---  181 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~------~---~--g~~V~~iDi---d~~ai~~A-----------r~~~~~~G~---  181 (284)
                      +.-+|||+|-|+ |+..+...+..      .   +  .-++++++.   +++-+..|           +++.+....   
T Consensus        66 ~~~~i~e~gfG~-Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (676)
T 3ps9_A           66 PLFVVAESGFGT-GLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  144 (676)
T ss_dssp             SEEEEEEECCTT-SHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred             CceEEEEeCCch-HHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence            345999999995 78877665521      1   1  245999999   77777643           344443321   


Q ss_pred             ------C---CCCeEEEEeccccccccC-----CCccEEEecccccC-ChHH-HHHHHHHHHhhcCCCcEEEEEec
Q 036061          182 ------F---EKRMKFVTCDIMQVKEKL-----GEYDCIFLAALVGM-SKEE-KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       182 ------l---~~~I~f~~~D~~~~~~~~-----~~fD~V~~aa~v~~-~~~~-k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                            +   .-.+++..||+.+....+     ..||++|++.+-.. +++. -.+++..+++.++|||++..-+.
T Consensus       145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  220 (676)
T 3ps9_A          145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS  220 (676)
T ss_dssp             EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                  0   023557889988766544     46999999986411 1111 26799999999999999887553

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.41  E-value=0.025  Score=54.42  Aligned_cols=101  Identities=12%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      .+|..||.|=+|+ +|.+||+   .|.+|+|+|+|++.++.-++            ++++.- -+.+.+|- .|..+   
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~---~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~-~~g~l~~t-t~~~~---   93 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFAL---LGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRAL-SSGRLSFA-ESAEE---   93 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEC-SSHHH---
T ss_pred             CEEEEEccCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HcCCeeEE-cCHHH---
Confidence            5899999996664 5677887   78999999999998876432            222210 12355653 33222   


Q ss_pred             cCCCccEEEecccccC------ChHHHHHHHHHHHhhcCC---CcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKD---GGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~p---Gg~lv~r~  240 (284)
                      .....|++|++.....      +...-....+.+.++|++   |.+++++|
T Consensus        94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS  144 (444)
T 3vtf_A           94 AVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS  144 (444)
T ss_dssp             HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS
T ss_pred             HHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            2235688887643211      112346677888888874   55788877

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.41  E-value=0.12  Score=44.95  Aligned_cols=96  Identities=6%  Similarity=-0.059  Sum_probs=59.0

Q ss_pred             CCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .++||..|+|-+|-.   ++++ ...|.+|++++.++...+....         .+++++.+|+.++.  ..++|+||..
T Consensus         5 ~~~ilVtGaG~iG~~---l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~~--~~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFGHGYTARV---LSRALAPQGWRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEPS--LDGVTHLLIS   70 (286)
T ss_dssp             CCEEEEETCCHHHHH---HHHHHGGGTCEEEEEESCGGGHHHHHH---------TTEEEEESSSSCCC--CTTCCEEEEC
T ss_pred             cCcEEEECCcHHHHH---HHHHHHHCCCEEEEEEcChhhhhhHhh---------CCCeEEEecccccc--cCCCCEEEEC
Confidence            369999998644432   2222 2368999999999875433221         36899999998855  6789999876


Q ss_pred             cccc-CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALVG-MSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v~-~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +... ........+++.+.+.-+.-..++.-+
T Consensus        71 a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           71 TAPDSGGDPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             CCccccccHHHHHHHHHHHhhcCCceEEEEee
Confidence            6432 112223445555544312224566555

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.37  E-value=0.016  Score=51.59  Aligned_cols=90  Identities=11%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.. +..|++   .|.+|+.+|++++..+...+    .|     +++ ..|..+..   ...|+||++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~~---~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK---AGCSVTIWNRSPEKAEELAA----LG-----AER-AATPCEVV---ESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHHH----TT-----CEE-CSSHHHHH---HHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CC-----Cee-cCCHHHHH---hcCCEEEEEc
Confidence            68999999987764 333444   68899999999988766554    24     222 23333222   3479999764


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~  240 (284)
                      .-   ...-..++   +.+.+.+++|.+++-.+
T Consensus        66 p~---~~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 AD---PAAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             SS---HHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CC---HHHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            31   23445666   78888999998876654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.37  E-value=0.036  Score=50.94  Aligned_cols=94  Identities=21%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      +++|.+||+|.+|.+-....+  ..|.+|+.+|.+++. .+.+    .+.| .    ++.  |..+.   ....|+|+++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~--~~G~~V~~~~~~~~~~~~~a----~~~G-~----~~~--~~~e~---~~~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLK--DSGVDVTVGLRSGSATVAKA----EAHG-L----KVA--DVKTA---VAAADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHH--HTTCCEEEECCTTCHHHHHH----HHTT-C----EEE--CHHHH---HHTCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHH--HCcCEEEEEECChHHHHHHH----HHCC-C----EEc--cHHHH---HhcCCEEEEe
Confidence            468999999987765332222  257889999999754 4444    3456 2    222  43332   2368999987


Q ss_pred             ccccCChHHHHHHHH-HHHhhcCCCcEEEEEecCcccc
Q 036061          210 ALVGMSKEEKVKIIK-HIRKYMKDGGVLLVRSAKGARA  246 (284)
Q Consensus       210 a~v~~~~~~k~~il~-~l~~~l~pGg~lv~r~~~glr~  246 (284)
                      .-.    ..-..+++ ++...++||.+++.  ..|...
T Consensus        80 vp~----~~~~~v~~~~i~~~l~~~~ivi~--~~gv~~  111 (338)
T 1np3_A           80 TPD----EFQGRLYKEEIEPNLKKGATLAF--AHGFSI  111 (338)
T ss_dssp             SCH----HHHHHHHHHHTGGGCCTTCEEEE--SCCHHH
T ss_pred             CCc----HHHHHHHHHHHHhhCCCCCEEEE--cCCchh
Confidence            543    34467887 88889999987763  356544

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=95.33  E-value=0.0024  Score=59.57  Aligned_cols=44  Identities=5%  Similarity=0.027  Sum_probs=38.8

Q ss_pred             CCCCEEEEe--ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 036061          129 VNPKKVAFV--GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ  174 (284)
Q Consensus       129 ~~~~~VL~I--GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~  174 (284)
                      .++.+||.+  |+|++|..++.+|+.  .|++|+++|.+++..+.+++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~--~Ga~Vi~~~~~~~~~~~~~~  214 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLK--DGIKLVNIVRKQEQADLLKA  214 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHh
Confidence            678999999  889999999999993  68899999999998888765

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.33  E-value=0.052  Score=51.12  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C------------CCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F------------EKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l------------~~~I~f~~~D~~~~~~  198 (284)
                      ++|..||+|.+|........  . |.+|+++|++++.++..++    .|. .            ..++++ +.|..+   
T Consensus         1 MkI~VIG~G~vG~~~A~~La--~-G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~---   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS--L-QNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKA---   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT--T-TSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHh--C-CCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHH---
Confidence            47999999977765322221  3 7899999999987765432    120 0            113333 223211   


Q ss_pred             cCCCccEEEecccccC-------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .....|+||++.--..       +...-..+++.+.+ ++||.+++..+.
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST  118 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC
Confidence            1235799998743210       11146778899999 999998887554

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.32  E-value=0.017  Score=52.29  Aligned_cols=99  Identities=13%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ++|+.||+|.+|..- ..|++   .|..|+.++.++  .    +.+++.|.    .....++..-.+.+-+.....+|+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~--~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~v   73 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR---SGEDVHFLLRRD--Y----EAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLV   73 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH---TSCCEEEECSTT--H----HHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEEcCc--H----HHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEE
Confidence            589999999887653 33444   578999999986  2    22334452    0011221000011111123579999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      +++.-.    .+-..+++.+.+.++|+..++.- .+|+
T Consensus        74 ilavk~----~~~~~~l~~l~~~l~~~~~iv~l-~nGi  106 (312)
T 3hn2_A           74 LVGLKT----FANSRYEELIRPLVEEGTQILTL-QNGL  106 (312)
T ss_dssp             EECCCG----GGGGGHHHHHGGGCCTTCEEEEC-CSSS
T ss_pred             EEecCC----CCcHHHHHHHHhhcCCCCEEEEe-cCCC
Confidence            986432    23346889999999999866543 3554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.30  E-value=0.092  Score=45.18  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhc-C-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNH-L-KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~-~-~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------  198 (284)
                      ++++||..|++ .|+..- +|++. . .|++|+.++.+++..+...+.+...|   .++.++.+|+.+...         
T Consensus         3 ~~k~vlITGas-ggIG~~-~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~   77 (276)
T 1wma_A            3 GIHVALVTGGN-KGIGLA-IVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLR   77 (276)
T ss_dssp             CCCEEEESSCS-SHHHHH-HHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHH-HHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHH
Confidence            46788988875 455433 34322 3 68999999999988777766666655   478999999886321         


Q ss_pred             -cCCCccEEEecccccCC-------hHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 -KLGEYDCIFLAALVGMS-------KEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~~-------~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ..+..|+|+.++.+...       .++.           ..+++.+.+.|+++|.++.-+
T Consensus        78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence             12368999877654211       1222           245667778888778877765

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.28  E-value=0.077  Score=48.62  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCCEEEEec-cCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          130 NPKKVAFVG-SGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+.+|+.+| +|.+|.+......  ..|  .+|+.+|++++ ...+..+....  ...+++.+.++ .++...+.+.|+|
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~--~~g~~~ev~l~Di~~~-~~~~~dL~~~~--~~~~v~~~~~t-~d~~~al~gaDvV   80 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMK--MNPLVSVLHLYDVVNA-PGVTADISHMD--TGAVVRGFLGQ-QQLEAALTGMDLI   80 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHH--HCTTEEEEEEEESSSH-HHHHHHHHTSC--SSCEEEEEESH-HHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHH--hCCCCCEEEEEeCCCc-HhHHHHhhccc--ccceEEEEeCC-CCHHHHcCCCCEE
Confidence            567999999 8988887654432  144  78999999987 33444443322  11234443331 1222334678999


Q ss_pred             EecccccC----ChH--------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGM----SKE--------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~----~~~--------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |..+.+..    +..        --..+.+.+.+. .|.+++++-+
T Consensus        81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~S  125 (326)
T 1smk_A           81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLIS  125 (326)
T ss_dssp             EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence            98875422    111        123444555554 5788887754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.22  E-value=0.039  Score=53.01  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ++|..||+|.+|.. +..|++ ..+|.+|+++|++++.++..++            .+.+.  ...++++ +.|..+.  
T Consensus         6 mkI~VIG~G~mG~~lA~~La~-~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~-t~~~~e~--   79 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAH-MCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNLFF-STNIDDA--   79 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEEE-ESCHHHH--
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEEE-ECCHHHH--
Confidence            68999999988864 445555 2347899999999988776432            22211  0124554 2333221  


Q ss_pred             cCCCccEEEecccccCC-----------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMS-----------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~-----------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ....|+||++..-..+           ...-..+.+.+.+.+++|.+++..+
T Consensus        80 -~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  131 (467)
T 2q3e_A           80 -IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS  131 (467)
T ss_dssp             -HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS
T ss_pred             -HhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC
Confidence             2357999987421111           1113567788999999988877654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.18  E-value=0.042  Score=53.16  Aligned_cols=97  Identities=13%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++|.+||+|.+|.+- ..|++   .|.+|+.+|++++.++...+   ..+  ...+.. +.|..+....+...|+||+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~~r~~~~~~~l~~---~~~--~~gi~~-~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES---RGYTVSIFNRSREKTEEVIA---ENP--GKKLVP-YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHH---HST--TSCEEE-CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHh---hCC--CCCeEE-eCCHHHHHhCCCCCCEEEE
Confidence            34689999999887652 23333   68899999999988765544   221  023332 3344443333345899997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.-.+   ..-..+++.+...++||.+++-
T Consensus        85 ~Vp~~---~~v~~vl~~l~~~l~~g~iIId  111 (480)
T 2zyd_A           85 MVKAG---AGTDAAIDSLKPYLDKGDIIID  111 (480)
T ss_dssp             CSCSS---SHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ECCCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence            64321   2345788999999999886653

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.18  E-value=0.027  Score=50.82  Aligned_cols=97  Identities=11%  Similarity=0.189  Sum_probs=58.6

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeC--ChHHHHHHHHHHHhcCC-----CC-CCeEEEEe-ccccccccCC
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDI--DEAANDVARQIVSSDIE-----FE-KRMKFVTC-DIMQVKEKLG  201 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDi--d~~ai~~Ar~~~~~~G~-----l~-~~I~f~~~-D~~~~~~~~~  201 (284)
                      ++|.+||+|.+|..- ..|++   .|.+|+.+|+  +++.++..++    .|.     .. .++++... |..   ....
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~---~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISA----GREHPRLGVKLNGVEIFWPEQLE---KCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHT----TCCBTTTTBCCCSEEEECGGGHH---HHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEEccCCHHHHHHHHH----hCcCcccCccccceEEecHHhHH---HHHh
Confidence            479999999776542 23444   5789999999  8887654433    231     00 11222110 221   1234


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      .+|+||++.--    .....+++.+.+ ++||..++.- .+|+
T Consensus        71 ~~D~vi~~v~~----~~~~~v~~~i~~-l~~~~~vv~~-~ng~  107 (335)
T 1txg_A           71 NAEVVLLGVST----DGVLPVMSRILP-YLKDQYIVLI-SKGL  107 (335)
T ss_dssp             TCSEEEECSCG----GGHHHHHHHHTT-TCCSCEEEEC-CCSE
T ss_pred             cCCEEEEcCCh----HHHHHHHHHHhc-CCCCCEEEEE-cCcC
Confidence            68999986532    456778889988 8888866543 3444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.14  E-value=0.037  Score=50.18  Aligned_cols=99  Identities=14%  Similarity=0.216  Sum_probs=56.8

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-----CCCCeEEEEeccccccccCC-Ccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-----FEKRMKFVTCDIMQVKEKLG-EYD  204 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-----l~~~I~f~~~D~~~~~~~~~-~fD  204 (284)
                      ++|+.||+|.+|.. +..|++   .|..|+.+|.++.  +.    +++.|.     .....++....+.+-+.... .+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~~--~~----i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK---TGHCVSVVSRSDY--ET----VKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---TTCEEEEECSTTH--HH----HHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCChH--HH----HHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            68999999977654 233444   6789999999872  22    223331     01123321011111112233 799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      +|+++.-.    .+-..+++.+...++++..++.- .+|+
T Consensus        74 lVilavK~----~~~~~~l~~l~~~l~~~t~Iv~~-~nGi  108 (320)
T 3i83_A           74 CTLLCIKV----VEGADRVGLLRDAVAPDTGIVLI-SNGI  108 (320)
T ss_dssp             EEEECCCC----CTTCCHHHHHTTSCCTTCEEEEE-CSSS
T ss_pred             EEEEecCC----CChHHHHHHHHhhcCCCCEEEEe-CCCC
Confidence            99987432    12235788999999998876543 3554

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.12  E-value=0.23  Score=44.04  Aligned_cols=104  Identities=18%  Similarity=0.266  Sum_probs=70.5

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccc-------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-------  198 (284)
                      .+++||..|++ .|+.   +..|++   .|++|+.+|.+++ ..+...+.++..|   .++.++.+|+.+...       
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAK---EGANIAIAYLDEEGDANETKQYVEKEG---VKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHTTT---CCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEeCCchHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHH
Confidence            56899999986 3543   333444   7999999999876 4555556666655   489999999986321       


Q ss_pred             ---cCCCccEEEecccccC--------ChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ---KLGEYDCIFLAALVGM--------SKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ---~~~~fD~V~~aa~v~~--------~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ..+..|+++.++.+..        +.++.           ..+++.+.+.|+++|.++.-+
T Consensus       119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence               2346899987764311        22222           346677888899999887755

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.12  E-value=0.21  Score=42.91  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------  198 (284)
                      .+++||..|++ .|+.   +..|++   .|++|+.+|.+++..+...+.+...+   .++.++.+|+.+...        
T Consensus         8 ~~k~vlITGas-~giG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSG-GGIGQAYAEALAR---EGAAVVVADINAEAAEAVAKQIVADG---GTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence            56889999985 3443   334444   79999999999999888877777666   489999999986321        


Q ss_pred             --cCCCccEEEecccc
Q 036061          199 --KLGEYDCIFLAALV  212 (284)
Q Consensus       199 --~~~~fD~V~~aa~v  212 (284)
                        ..+..|+++.++.+
T Consensus        81 ~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence              22478999977654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.12  E-value=0.2  Score=45.34  Aligned_cols=102  Identities=18%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH-HHHHh---cCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR-QIVSS---DIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar-~~~~~---~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ++|..||+|.+|.+..........+.+|+.+|++++.++.-. .+.+.   .+ ...++++ +.|..    ++...|+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~-t~d~~----~l~~aDvVi   74 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL-FDTKVTG-SNDYA----DTANSDIVI   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT-CCCEEEE-ESCGG----GGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhccc-CCcEEEE-CCCHH----HHCCCCEEE
Confidence            479999999877764443331223789999999998766322 11111   12 1122332 23432    256789999


Q ss_pred             ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...    ++...+        ...+.+.+.++ .|++.+++-+
T Consensus        75 iav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~t  118 (310)
T 1guz_A           75 ITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS  118 (310)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEc
Confidence            88743    222211        24566666666 5888876643

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.11  E-value=0.028  Score=51.33  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCC-------cEEEEEeCChH-----HHHHHHHHHHh---c-CC-CCCCeEEEEecc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKS-------THFDNFDIDEA-----ANDVARQIVSS---D-IE-FEKRMKFVTCDI  193 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g-------~~V~~iDid~~-----ai~~Ar~~~~~---~-G~-l~~~I~f~~~D~  193 (284)
                      ++|.+||+|.+|.+- ..|++   .|       .+|+.+|++++     ..+..++.-..   . |. +..++++ +.|.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~---~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~   84 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGG---NAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDV   84 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH---HHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSH
T ss_pred             CeEEEECCCHHHHHHHHHHHh---cCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCH
Confidence            589999999876542 23444   45       78999999987     55443321000   0 10 1123433 2332


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      .+   ....+|+||++.-    ......+++.+.+.++||..++.- .+|+
T Consensus        85 ~~---~~~~aD~Vilav~----~~~~~~v~~~i~~~l~~~~ivv~~-~~Gi  127 (354)
T 1x0v_A           85 VQ---AAEDADILIFVVP----HQFIGKICDQLKGHLKANATGISL-IKGV  127 (354)
T ss_dssp             HH---HHTTCSEEEECCC----GGGHHHHHHHHTTCSCTTCEEEEC-CCCB
T ss_pred             HH---HHcCCCEEEEeCC----HHHHHHHHHHHHhhCCCCCEEEEE-CCcc
Confidence            22   1246899998743    256778999999999988866543 3443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.10  E-value=0.03  Score=50.43  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+|| +|.+|.+-.....  ..|.+|+.+|.+++.                       |..   ......|+||++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~--~~G~~V~~~~~~~~~-----------------------~~~---~~~~~aDvVilav   73 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLR--ASGYPISILDREDWA-----------------------VAE---SILANADVVIVSV   73 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHH--TTTCCEEEECTTCGG-----------------------GHH---HHHTTCSEEEECS
T ss_pred             CEEEEEcCCCHHHHHHHHHHH--hCCCeEEEEECCccc-----------------------CHH---HHhcCCCEEEEeC
Confidence            5899999 9987765322222  367899999998751                       111   1224689999875


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      -.    ....++++++.+.++||.+++.-
T Consensus        74 p~----~~~~~vl~~l~~~l~~~~iv~~~   98 (298)
T 2pv7_A           74 PI----NLTLETIERLKPYLTENMLLADL   98 (298)
T ss_dssp             CG----GGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CH----HHHHHHHHHHHhhcCCCcEEEEC
Confidence            43    55778999999999998866543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.09  E-value=0.043  Score=49.96  Aligned_cols=102  Identities=13%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEEecc
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ||..||+|.+|.+.......... .+|+-+|++++.++- +.++.+........+++.. .|.    .++.+.|+|++++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~----~a~~~aD~Vi~~a   75 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY----EDMRGSDIVLVTA   75 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG----GGGTTCSEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH----HHhCCCCEEEEeC
Confidence            58899999888765544321122 479999999887654 5555443110112334443 453    2456789999886


Q ss_pred             cc----cCCh--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSK--------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~--------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+    ||+.        +-..++.+.+.++ .|+|.+++-+
T Consensus        76 g~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  116 (308)
T 2d4a_B           76 GIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITT  116 (308)
T ss_dssp             SCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence            54    2222        2256777778777 5999887744

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.03  E-value=0.048  Score=52.69  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEeccccccccCCCccEEEe
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ++|..||+|.+|.. +..|++   .|.+|+.+|++++.++...+   ..|.  ...++.. ..|..++...+...|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~---~~g~~~~~~~i~~-~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMK---ANASAPFAGNLKA-FETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHH---HTTTSTTGGGEEE-CSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHH---hcCCCCCCCCeEE-ECCHHHHHhcccCCCEEEE
Confidence            47999999987754 233444   67899999999987765544   3331  0112332 2344333333335899997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +.-.   ...-..+++.+...++||.+++-
T Consensus        75 aVp~---~~~v~~vl~~l~~~l~~g~iIId  101 (478)
T 1pgj_A           75 LVQA---GAATDSTIEQLKKVFEKGDILVD  101 (478)
T ss_dssp             CCCC---SHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ecCC---hHHHHHHHHHHHhhCCCCCEEEE
Confidence            6432   12345688899999999886653

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.00  E-value=0.075  Score=51.43  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             CCEEEEeccCCChhHHH--HHHhh--cCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEE-eccccccccCCCc
Q 036061          131 PKKVAFVGSGPMPLTSI--VMAKN--HLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVT-CDIMQVKEKLGEY  203 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai--~LA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~-~D~~~~~~~~~~f  203 (284)
                      ..+|..||+|....+++  .|++.  .+++.+|+-+|++++.++......+..  + .....++.. .|..   ..+.+.
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~-~~~~~~I~~t~D~~---eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-KAPDIEFAATTDPE---EAFTDV  103 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-HCTTSEEEEESCHH---HHHSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCCCCEEEEECCHH---HHHcCC
Confidence            35999999997533323  46663  233778999999999877655544332  1 112444443 4532   234568


Q ss_pred             cEEEecccc
Q 036061          204 DCIFLAALV  212 (284)
Q Consensus       204 D~V~~aa~v  212 (284)
                      |+|++++.+
T Consensus       104 D~VViaag~  112 (472)
T 1u8x_X          104 DFVMAHIRV  112 (472)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEEcCCC
Confidence            999988765

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.98  E-value=0.062  Score=51.78  Aligned_cols=95  Identities=14%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .+|.+||+|.+|.. +..|++   .|.+|+.+|++++.++...+   ..+  ...+.. +.|..++...++..|+|+++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~---~~~--~~gi~~-~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES---RGYTVAIYNRTTSKTEEVFK---EHQ--DKNLVF-TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHH---HTT--TSCEEE-CSSHHHHHHTBCSSCEEEECC
T ss_pred             CcEEEEeeHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHHH---hCc--CCCeEE-eCCHHHHHhhccCCCEEEEEc
Confidence            58999999987754 233444   67899999999987766554   222  123432 334444433334589999764


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      -.   ...-..+++.+...++||.+++-
T Consensus        77 p~---~~~v~~vl~~l~~~l~~g~iiId  101 (474)
T 2iz1_A           77 QA---GAATDATIKSLLPLLDIGDILID  101 (474)
T ss_dssp             CT---THHHHHHHHHHGGGCCTTCEEEE
T ss_pred             cC---chHHHHHHHHHHhhCCCCCEEEE
Confidence            32   13345688899999999886653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.97  E-value=0.16  Score=46.12  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHH-HHHHHHh---cCCCCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDV-ARQIVSS---DIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~-Ar~~~~~---~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+|..||+|.+|.+......  ..|. .|+.+|++++.++. +..+.+.   .+ ...++++. .|.    ..+.+.|+|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la--~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~-~~~~i~~t-~d~----~a~~~aD~V   74 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA--AKELGDIVLLDIVEGVPQGKALDLYEASPIEG-FDVRVTGT-NNY----ADTANSDVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCSEEEEECSSSSHHHHHHHHHHTTHHHHT-CCCCEEEE-SCG----GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCCeEEEEeCCccHHHHHHHhHHHhHhhcC-CCeEEEEC-CCH----HHHCCCCEE
Confidence            58999999988776544333  1342 69999999987753 3332221   12 12234432 443    335678999


Q ss_pred             EecccccCC------------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMS------------KEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~------------~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++.++..            .+-+.++.+.+.+. .|++++++-+
T Consensus        75 i~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t  119 (309)
T 1ur5_A           75 VVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN  119 (309)
T ss_dssp             EECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECC
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcC
Confidence            988754221            12345666777766 5899887744

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.96  E-value=0.019  Score=45.73  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-EeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+++|+.||+|.+|........  ..|.+|+.+|++++..+   ++.+..|.     .+. ..+..+   ...++|+|+.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~--~~g~~v~v~~r~~~~~~---~~a~~~~~-----~~~~~~~~~~---~~~~~Divi~   86 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFS--YPQYKVTVAGRNIDHVR---AFAEKYEY-----EYVLINDIDS---LIKNNDVIIT   86 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCC--TTTCEEEEEESCHHHHH---HHHHHHTC-----EEEECSCHHH---HHHTCSEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCHHHHH---HHHHHhCC-----ceEeecCHHH---HhcCCCEEEE
Confidence            3889999999976654322222  36788999999987654   34445552     221 223222   2346899997


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +...+.+      ++.  ...+++|+.++-
T Consensus        87 at~~~~~------~~~--~~~l~~g~~vid  108 (144)
T 3oj0_A           87 ATSSKTP------IVE--ERSLMPGKLFID  108 (144)
T ss_dssp             CSCCSSC------SBC--GGGCCTTCEEEE
T ss_pred             eCCCCCc------Eee--HHHcCCCCEEEE
Confidence            6543211      111  246788776654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.87  E-value=0.2  Score=45.53  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CEEEEecc-CCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccccccCCCccEE
Q 036061          132 KKVAFVGS-GPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGs-G~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~~~~~~fD~V  206 (284)
                      +||..||+ |..|.+......  ..+  .+++.+|+++ +-..+..+.+...  ..++++..+  |..   ....+.|+|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~--~~~~~~ev~L~Di~~-~~~~a~dL~~~~~--~~~l~~~~~t~d~~---~a~~~aDvV   72 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK--NSPLVSRLTLYDIAH-TPGVAADLSHIET--RATVKGYLGPEQLP---DCLKGCDVV   72 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH--TCTTCSEEEEEESSS-HHHHHHHHTTSSS--SCEEEEEESGGGHH---HHHTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHH--hCCCCcEEEEEeCCc-cHHHHHHHhccCc--CceEEEecCCCCHH---HHhCCCCEE
Confidence            48999998 988887554433  244  6899999998 4444444433221  123444433  332   234578999


Q ss_pred             Eeccccc----CChH--------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVG----MSKE--------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~----~~~~--------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+.+.++    ++..        --..+.+.+.++ .|++++++-+
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~s  117 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence            9887552    2211        123444555554 5889888854

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=94.85  E-value=0.027  Score=54.01  Aligned_cols=111  Identities=9%  Similarity=0.003  Sum_probs=70.2

Q ss_pred             cchhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061          109 YGNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM  186 (284)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I  186 (284)
                      ++|+....+.-...+.+..  .-.+++|..+|.|.+|......++  ..|++|+++|+++.....|.    ..|.     
T Consensus       187 ~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lk--a~Ga~Viv~D~~p~~a~~A~----~~G~-----  255 (436)
T 3h9u_A          187 FDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALR--GFGARVVVTEVDPINALQAA----MEGY-----  255 (436)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHH----HTTC-----
T ss_pred             hhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHH--HCCCEEEEECCChhhhHHHH----HhCC-----
Confidence            4666665555444444332  356899999999999888777776  46899999999987654443    3452     


Q ss_pred             EEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          187 KFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       187 ~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ++  .+..   ..+...|+|+..... ++       +=.+..+.||||++|+ ..++|
T Consensus       256 ~~--~sL~---eal~~ADVVilt~gt~~i-------I~~e~l~~MK~gAIVI-NvgRg  300 (436)
T 3h9u_A          256 QV--LLVE---DVVEEAHIFVTTTGNDDI-------ITSEHFPRMRDDAIVC-NIGHF  300 (436)
T ss_dssp             EE--CCHH---HHTTTCSEEEECSSCSCS-------BCTTTGGGCCTTEEEE-ECSSS
T ss_pred             ee--cCHH---HHHhhCCEEEECCCCcCc-------cCHHHHhhcCCCcEEE-EeCCC
Confidence            22  2333   334578999875421 11       1124567899998764 44555

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.84  E-value=0.051  Score=48.28  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ..+|.+||+|.+|..-. .|++   .|.+|+.+|++++..+...+    .|     +++ ..|..+.   ....|+|+++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~~----~g-----~~~-~~~~~~~---~~~~D~vi~~   67 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLK---EGVTVYAFDLMEANVAAVVA----QG-----AQA-CENNQKV---AAASDIIFTS   67 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHT----TT-----CEE-CSSHHHH---HHHCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH----CC-----Cee-cCCHHHH---HhCCCEEEEE
Confidence            47999999998876532 2333   57899999999987665433    24     222 2233222   2357999987


Q ss_pred             ccccCChHHHHHHHH---HHHhhcCCCcEEEEE
Q 036061          210 ALVGMSKEEKVKIIK---HIRKYMKDGGVLLVR  239 (284)
Q Consensus       210 a~v~~~~~~k~~il~---~l~~~l~pGg~lv~r  239 (284)
                      ...   ...-..++.   .+.+.+++|..++.-
T Consensus        68 vp~---~~~~~~v~~~~~~l~~~l~~~~~vv~~   97 (301)
T 3cky_A           68 LPN---AGIVETVMNGPGGVLSACKAGTVIVDM   97 (301)
T ss_dssp             CSS---HHHHHHHHHSTTCHHHHSCTTCEEEEC
T ss_pred             CCC---HHHHHHHHcCcchHhhcCCCCCEEEEC
Confidence            532   133445664   777888998876553

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.83  E-value=0.24  Score=44.19  Aligned_cols=76  Identities=20%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             CCCEEEEeccCCChhHH---HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--------
Q 036061          130 NPKKVAFVGSGPMPLTS---IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------  198 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~ta---i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------  198 (284)
                      .+++||..|++ .|+..   ..|++   .|++|+.+|++++.++...+.+...|   .++.++.+|+.+...        
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~---~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFAR---RGARLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHH
Confidence            56799999986 35432   33444   79999999999999888887777766   389999999987431        


Q ss_pred             --cCCCccEEEecccc
Q 036061          199 --KLGEYDCIFLAALV  212 (284)
Q Consensus       199 --~~~~fD~V~~aa~v  212 (284)
                        ..+..|+++.++.+
T Consensus       103 ~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHSSCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence              12468999977754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.83  E-value=0.025  Score=50.32  Aligned_cols=90  Identities=10%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.. +..|++   .|.+|+++|++++..+...+    .|.     ++ ..|..+..   ...|+|+++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g~-----~~-~~~~~~~~---~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR---AGFDVTVWNRNPAKCAPLVA----LGA-----RQ-ASSPAEVC---AACDITIAML   65 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH---HTCCEEEECSSGGGGHHHHH----HTC-----EE-CSCHHHHH---HHCSEEEECC
T ss_pred             CeEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CCC-----ee-cCCHHHHH---HcCCEEEEEc
Confidence            47999999998875 334444   57899999999988766554    242     22 22333222   3479999764


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~  240 (284)
                      .-   ...-..++   +.+.+.+++|.+++-.+
T Consensus        66 ~~---~~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           66 AD---PAAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             SS---HHHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             CC---HHHHHHHHcCchhhhhcccCCCEEEECC
Confidence            32   12344566   67778889988876544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.81  E-value=0.04  Score=49.91  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             CCEEEEeccCCChhH-HHHHHhhcCCCc-EEEEEeCC--hHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLT-SIVMAKNHLKST-HFDNFDID--EAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~-~V~~iDid--~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .++|.+||+|.+|.. +..|++   .|. +|+++|++  ++..+.++    +.|.     ++ ..+..+.   ....|+|
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~---~G~~~V~~~dr~~~~~~~~~~~----~~g~-----~~-~~~~~e~---~~~aDvV   87 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQ---AGAIDMAAYDAASAESWRPRAE----ELGV-----SC-KASVAEV---AGECDVI   87 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH---HSCCEEEEECSSCHHHHHHHHH----HTTC-----EE-CSCHHHH---HHHCSEE
T ss_pred             CCEEEEECccHHHHHHHHHHHH---CCCCeEEEEcCCCCHHHHHHHH----HCCC-----EE-eCCHHHH---HhcCCEE
Confidence            469999999987754 233444   567 99999997  46555443    3452     22 2233222   2357999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++.--    ..-.++++.+...+++|.+++-.+
T Consensus        88 i~~vp~----~~~~~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           88 FSLVTA----QAALEVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             EECSCT----TTHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEecCc----hhHHHHHHhhHhhcCCCCEEEEcC
Confidence            976432    233457899999999998877543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.81  E-value=0.28  Score=45.21  Aligned_cols=105  Identities=22%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             CCCCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEE-EeccccccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~  205 (284)
                      .++.+|..||+|.+|.+. ..++. ......++.+|++++.+ ..|..+-+... ......++ .+|.    .+..+.|+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~-~~~~~el~L~Di~~~~~~g~a~DL~~~~~-~~~~~~i~~~~d~----~~~~~aDi   90 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILM-KDLADELALVDVIEDKLKGEMMDLQHGSL-FLKTPKIVSSKDY----SVTANSKL   90 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHHHHHTGG-GCSCCEEEECSSG----GGGTTEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-CCCCceEEEEeCChHHHHHHHHhhhhhhh-ccCCCeEEEcCCH----HHhCCCCE
Confidence            567899999999877643 33444 12224899999998744 34555555432 11222333 3443    24567999


Q ss_pred             EEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++.+.+    ||+..+        -.++.+.+.++ .|++++++-+
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvt  136 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVS  136 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            9987754    443322        24566666776 8999888855

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	2e-04

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 108 YYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA 167
           Y+     L      +L    VV P +   +G G    +  + A  +        +D + A
Sbjct: 8   YFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGY----DVTAWDKNPA 63

Query: 168 ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL-AALVGMSKEEKVKIIKHI 226
           +     +I +++     +   V  + +    +   YD I     ++ +  +    +I ++
Sbjct: 64  SMANLERIKAAEGLDNLQTDLVDLNTLTFDGE---YDFILSTVVMMFLEAQTIPGLIANM 120

Query: 227 RKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFH 267
           ++  K GG  L+ +A     F   V       + EL   + 
Sbjct: 121 QRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYE 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.75
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.75
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.73
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.73
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.64
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.64
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.64
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.63
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.62
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.6
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.6
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.6
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.59
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.58
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.57
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.56
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.56
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.55
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.54
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.52
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.51
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.48
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.46
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.46
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.45
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.45
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.43
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.42
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.39
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.38
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.37
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.34
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.32
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.32
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.3
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.3
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.19
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.18
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.17
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.17
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.14
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.14
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.1
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.05
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.03
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.01
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.98
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.97
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.95
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.93
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.93
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.9
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.89
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.88
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.74
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.72
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.7
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.66
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.61
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.6
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.59
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.55
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.52
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.51
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.48
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.43
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.41
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.38
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.38
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.38
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.34
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.31
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.29
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.27
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.22
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.16
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.11
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.09
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.04
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.01
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.98
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.96
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.94
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.82
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.81
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.8
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.77
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.76
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.75
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.56
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.54
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.47
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.47
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.36
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.35
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.29
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.24
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.09
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.08
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.05
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.74
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.7
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.69
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.65
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.61
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.61
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.57
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.47
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.41
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.37
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.36
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.34
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.11
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.06
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.04
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.02
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.89
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.87
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.86
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.73
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.7
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.61
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.6
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.53
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.5
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.49
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.48
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.48
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.25
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.18
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.07
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.06
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.99
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.9
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.87
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.76
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.48
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.45
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.45
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.44
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.32
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.25
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.09
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.03
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.03
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.97
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.92
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.87
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.79
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.75
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.69
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.66
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.55
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.42
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.4
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.22
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.21
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.11
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.09
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.98
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.91
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.5
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.47
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.44
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.28
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.2
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.1
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.08
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.92
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.79
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.73
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.71
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.71
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.54
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.37
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.26
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.18
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.17
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.07
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.86
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.86
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.8
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.65
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	90.63
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	90.62
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.61
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.57
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	90.57
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	90.3
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.23
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.05
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.99
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.72
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.55
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.54
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.44
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.28
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	89.13
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.87
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.86
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.79
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.14
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.09
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.97
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.97
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	87.81
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	87.79
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.45
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.94
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.94
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	86.55
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	86.55
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.49
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.48
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	86.13
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	86.02
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	85.77
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.69
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	85.69
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	84.96
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	84.85
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	84.78
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	84.65
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	84.53
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.42
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	84.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.25
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.15
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.88
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	83.86
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.83
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.44
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.36
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	83.2
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.03
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	82.88
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.74
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.68
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.54
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	82.19
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.19
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.03
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.88
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	81.82
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.79
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	81.6
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.47
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	81.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.42

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=8.4e-18  Score=143.15  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=92.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+..+|||||||+ |..+..+|+   .|.+|+|+|+|+++++.|++.+...+.   .+.++++|+.+++...+.||+|+
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~---~~~~v~giD~S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~~~~~fD~I~  107 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKTFDYVI  107 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh---hhcccccccccccchhhhhhhhccccc---cccccccccccccccCcCceEEE
Confidence            36778999999997 567788998   789999999999999999999988773   68999999999887778899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +...+ .++..+..++++++.++|||||++++...
T Consensus       108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            76554 55667888999999999999999988764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.75  E-value=4e-18  Score=146.52  Aligned_cols=110  Identities=16%  Similarity=0.196  Sum_probs=92.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ...+++++++|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.+...|.  .+++|+++|+.+++.+.+.|
T Consensus         9 ~~~~l~~~~rVLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           9 QIAALKGNEEVLDVATGG-GHVANAFAP---FVKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHTCCSCCEEEEETCTT-CHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCE
T ss_pred             HhcCCCCcCEEEEecccC-cHHHHHHHH---hCCEEEEEECCHHHHhhhhhccccccc--cccccccccccccccccccc
Confidence            345778999999999997 566688888   578999999999999999999999884  68999999999988766789


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+....+. ..+++.++++++.+.|||||++++.+
T Consensus        83 D~v~~~~~l~-~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          83 HIVTCRIAAH-HFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccc-ccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999765442 12567789999999999999998854

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=8.6e-18  Score=146.16  Aligned_cols=111  Identities=19%  Similarity=0.371  Sum_probs=93.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++.+....++++|||||||+ |..++.|++   .|++|+|||+|++|++.|++.+...+.   +++|+++|+.+++.+ +
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~---~~~~v~gvD~s~~mi~~a~~~~~~~~~---~i~~~~~d~~~l~~~-~  104 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIAFK-N  104 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCCCC-S
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc---cceEEEEEeeccccccccccccccccc---cchheehhhhhcccc-c
Confidence            34455667888999999998 567788988   688999999999999999999998883   899999999988765 5


Q ss_pred             CccEEEecc--cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAA--LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa--~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|++..  ...++.++..++|++++++|||||++++..
T Consensus       105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            799998643  335677888999999999999999998843

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=9.3e-18  Score=142.36  Aligned_cols=108  Identities=20%  Similarity=0.281  Sum_probs=92.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||||||+ |..++.||+   .|++|+|+|+|+.+++.|++.++..|.  +++++.++|+.+... .+.||+|
T Consensus        27 ~~~~~grvLDiGcG~-G~~~~~la~---~g~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGN-GRNSLYLAA---NGYDVTAWDKNPASMANLERIKAAEGL--DNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             TTSCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC--TTEEEEECCTTTCCC-CCCEEEE
T ss_pred             ccCCCCcEEEECCCC-CHHHHHHHH---HhhhhccccCcHHHHHHHHHHhhhccc--cchhhhheecccccc-cccccEE
Confidence            345667999999996 778899998   689999999999999999999999984  579999999987665 4689999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +..... +++.++..++++.+.+.|+|||++++...
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            865544 66778889999999999999999988663

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.74  E-value=1.4e-17  Score=148.54  Aligned_cols=108  Identities=13%  Similarity=0.184  Sum_probs=93.5

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ++.++.+|||||||++ ..+..||++  +|++|+|||+|+.+++.|++.....| +.++++|+++|+.+++.+.+.||+|
T Consensus        64 ~l~~~~~vLDiGcG~G-~~~~~la~~--~~~~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~~l~~~~~sfD~V  139 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYG-GAARFLVRK--FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCEDNSYDFI  139 (282)
T ss_dssp             CCCTTCEEEEETCTTS-HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCCc-HHHhhhhcc--CCcEEEEEeccchhhhhhhccccccc-ccccccccccccccccccccccchh
Confidence            5688999999999974 566778873  58999999999999999999999999 7899999999999988777789999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..... ++  +++.++++++.+.|||||++++.+
T Consensus       140 ~~~~~l~h~--~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         140 WSQDAFLHS--PDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccchhhhc--cCHHHHHHHHHHhcCCCcEEEEEE
Confidence            865433 33  567789999999999999999865

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=8e-18  Score=142.11  Aligned_cols=108  Identities=15%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ....+.++++|||||||++ ..++.+|+   .+.+|+++|+|+++++.|++++++.| +.++++++++|+.+...+...|
T Consensus        27 ~~l~~~~g~~VLDiGcGsG-~~s~~lA~---~~~~V~avD~~~~~l~~a~~n~~~~g-l~~~v~~~~gda~~~~~~~~~~  101 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCGTG-GVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKIPDI  101 (186)
T ss_dssp             HHHCCCTTCEEEEESCTTS-HHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTSCCE
T ss_pred             HhcCCCCCCEEEEEECCeE-cccccccc---cceEEEEecCCHHHHHHHHHHHHHcC-CCcceEEEECchhhcccccCCc
Confidence            3447789999999999985 55677887   57899999999999999999999999 7889999999999888777899


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.||+....    ..-.++++.+.+.|||||++++..
T Consensus       102 D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         102 DIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEe
Confidence            999976543    445679999999999999998865

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=8.9e-18  Score=145.72  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..+..+++.||||||||+ |..+..||+   .+++|+|||+|+.+++.|++.+...|.  ++++|+++|+.+++.+.+.|
T Consensus        10 ~~~~~~~~~rILDiGcGt-G~~~~~la~---~~~~v~gvD~S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCE
T ss_pred             HHhCCCCCCEEEEeCCcC-cHHHHHHHH---hCCeEEEEeCChhhhhhhhhhhccccc--cccccccccccccccccccc
Confidence            345679999999999998 566678887   468999999999999999999999884  67999999999988777789


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|+....+.+ .++..++++++.+.|||||.+++..
T Consensus        84 D~v~~~~~l~~-~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          84 DIITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeeceeec-ccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            99987654422 2567899999999999999988853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=8.9e-18  Score=146.83  Aligned_cols=110  Identities=13%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .++..++++|||||||++. .+..+|+  ..|++|+|||+|+.+++.|+++++..| ++++++|+++|+.++. ..+.||
T Consensus        28 ~~~l~pg~~VLDiGCG~G~-~~~~la~--~~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~v~~~~~d~~~~~-~~~~fD  102 (245)
T d1nkva_          28 VLRMKPGTRILDLGSGSGE-MLCTWAR--DHGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYV-ANEKCD  102 (245)
T ss_dssp             HTCCCTTCEEEEETCTTCH-HHHHHHH--HTCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCC-CSSCEE
T ss_pred             HcCCCCCCEEEEEcCCCCH-HHHHHHH--hcCCEEEEEecccchhhHHHHHHHHhh-ccccchhhhhHHhhcc-ccCcee
Confidence            3467899999999999854 5667776  257999999999999999999999999 7899999999999864 346899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+....+ ....++.++++++++.|||||++++..
T Consensus       103 ~v~~~~~~-~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         103 VAACVGAT-WIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEESCG-GGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEEEehh-hccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            99865433 123567889999999999999999976

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.69  E-value=3.1e-17  Score=136.23  Aligned_cols=112  Identities=13%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC----------CCCeEEEEeccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF----------EKRMKFVTCDIM  194 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l----------~~~I~f~~~D~~  194 (284)
                      ...+.+++||||||||+ |..+++||+   .|++|||+|+|++|++.|++.+...+..          ...++|+++|..
T Consensus        15 ~l~~~~~~rvLd~GCG~-G~~a~~la~---~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHCCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HcCCCCCCEEEEecCcC-CHHHHHHHH---cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            34678999999999997 678899998   6999999999999999999998765410          246789999998


Q ss_pred             cccccC-CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKL-GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~-~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++.... ..||+|+..... ++..+++..+++++++.|||||.+++..
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            766543 469999865543 6677889999999999999999987765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=1.2e-16  Score=137.72  Aligned_cols=126  Identities=16%  Similarity=0.252  Sum_probs=99.3

Q ss_pred             CCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 036061          107 PYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKR  185 (284)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~  185 (284)
                      |||+...+++..   .+.++ .+++.+|||||||+ |..+..|+++. .++++|+|+|+|++|++.|++.++..+ ...+
T Consensus        20 P~Y~~~~~~i~~---~~~~~-~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~~~   93 (225)
T d1im8a_          20 PGYSNIITAIGM---LAERF-VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP   93 (225)
T ss_dssp             TTHHHHHHHHHH---HHHHH-CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CSSC
T ss_pred             CCHHHHHHHHHH---HHHHh-cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-ccch
Confidence            777766544433   22232 47788999999998 55567777632 479999999999999999999999888 6789


Q ss_pred             eEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          186 MKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       186 I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++.++|..+.+  ...||+|++.... .++.+++.++++++++.|||||.+++.+
T Consensus        94 ~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_          94 VEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            999999987654  3578988766544 5567889999999999999999999864

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=4.2e-16  Score=135.75  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=86.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|||||||++ .-+..||+   .|.+|+|||+|++|++.|++.+...|.   +++|+++|+.++.. .+.||+|+
T Consensus        35 ~~~~~~vLDiGCG~G-~~~~~l~~---~g~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~~~~~-~~~fD~i~  106 (246)
T d1y8ca_          35 NLVFDDYLDLACGTG-NLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNI-NRKFDLIT  106 (246)
T ss_dssp             TCCTTEEEEETCTTS-TTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCC-SCCEEEEE
T ss_pred             CCCCCeEEEEeCcCC-HHHHHHHH---hCCccEeeccchhhhhhccccccccCc---cceeeccchhhhcc-cccccccc
Confidence            356789999999985 55677888   678999999999999999999988883   79999999988654 35799998


Q ss_pred             ecc-cc--cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAA-LV--GMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa-~v--~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ... .+  ..+.++..++++.++++|+|||.|++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            532 22  236788899999999999999999963

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.1e-16  Score=135.72  Aligned_cols=107  Identities=14%  Similarity=0.220  Sum_probs=95.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      .++++||+||||. |+|++++|+....+++|+++|+|++..+.|++++++.| ++++++++.||+.+....      .+.
T Consensus        58 ~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeehhhcchhhhhhcccCC
Confidence            6789999999995 89999999965568999999999999999999999999 799999999999775432      347


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+||+++..    +.+...++.+.+.|+|||++++.+.
T Consensus       136 fD~ifiD~dk----~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         136 FDVAVVDADK----ENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEEEECSCS----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEEeCCH----HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            9999999775    7788899999999999999999986

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-16  Score=134.62  Aligned_cols=108  Identities=11%  Similarity=0.233  Sum_probs=88.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||++ ..+..+++  ..+.+|+|||+|+++++.|++.+...|.  .+++|+++|+.+++...+.||+|+
T Consensus        58 ~~~~~~vLDiGcG~G-~~~~~l~~--~~~~~v~~vD~s~~~l~~ak~~~~~~~~--~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          58 KTGTSCALDCGAGIG-RITKRLLL--PLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             CCCCSEEEEETCTTT-HHHHHTTT--TTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeccCCC-HhhHHHHH--hcCCEEEEeecCHHHhhccccccccccc--cccccccccccccccccccccccc
Confidence            356789999999985 44455544  2456899999999999999999988873  578999999999887667899999


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....+ +.+.++..++++++++.|+|||.+++..
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            76654 5566777899999999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-16  Score=134.21  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---------------CCCCeEEEEe
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE---------------FEKRMKFVTC  191 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~---------------l~~~I~f~~~  191 (284)
                      ...++.|||++|||. |..+++||+   .|++|||||+|++|++.|++.....+.               ...+++|.++
T Consensus        42 ~~~~~~rvLd~GCG~-G~~a~~LA~---~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          42 KGKSGLRVFFPLCGK-AVEMKWFAD---RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             CCCCCCEEEEeCCCC-cHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            357889999999997 788999999   899999999999999999997653210               1358999999


Q ss_pred             ccccccccC-CCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          192 DIMQVKEKL-GEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       192 D~~~~~~~~-~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |..++.... +.||+|+.... .+++.+++..+++.+.+.|||||++++..
T Consensus       118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            998876544 47999996654 47788999999999999999999877655

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=4.6e-16  Score=139.30  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=90.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...+|.+|||||||+ |..+..+|+....+++|+|+|+|+.+++.|++++...+.   +++|+++|+.+++.+ +.||+|
T Consensus        24 ~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~---~~~f~~~d~~~~~~~-~~fD~v   98 (281)
T d2gh1a1          24 KITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELN-DKYDIA   98 (281)
T ss_dssp             CCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc---ccccccccccccccc-CCceEE
Confidence            357889999999997 667788887434578999999999999999999998883   799999999886653 479999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +....++ ..+++.++++++.+.|||||.+++..++
T Consensus        99 ~~~~~l~-~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          99 ICHAFLL-HMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEESCGG-GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEehhhh-cCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            9766542 1245678999999999999999987643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=2.5e-15  Score=135.04  Aligned_cols=112  Identities=13%  Similarity=0.050  Sum_probs=94.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++.++.++++++|||||||.+++ ++.+|+  ..|++|||||+|++.++.|++.+++.| +..++.+...|..+.+   +
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~-a~~~a~--~~g~~v~gi~ls~~q~~~a~~~~~~~~-l~~~~~~~~~d~~~~~---~  116 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTT-MRRAVE--RFDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA---E  116 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHH-HHHHHH--HHCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC---C
T ss_pred             HHHHcCCCCCCEEEEecCCchHH-HHHHHH--hCceeEEEecchHHHHHHHHHHHHhhc-cccchhhhhhhhhhhc---c
Confidence            44555689999999999998655 577877  368999999999999999999999999 7899999999976543   5


Q ss_pred             CccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||.|+..... ++..+.+..+++.+.+.|||||++++.+
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            79999855443 6666778999999999999999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=5.5e-16  Score=133.96  Aligned_cols=109  Identities=18%  Similarity=0.214  Sum_probs=90.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++....++++++|||||||+ |+.+.+||+...++++|+++|+++++++.|++++++.+.  +++.++++|+.+.....+
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~--~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--ENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGC
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc--cccccccCchHHcccccc
Confidence            44455789999999999997 677788998666789999999999999999999999984  789999999988766667


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|++.+.+..       +.+.+.+.|||||+|++-.
T Consensus       144 ~fD~I~~~~~~~~-------~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         144 PYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CEEEEEECSBBSC-------CCHHHHHHEEEEEEEEEEB
T ss_pred             chhhhhhhccHHH-------hHHHHHHhcCCCcEEEEEE
Confidence            8999998876521       2245678899999998843

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=3.6e-15  Score=134.42  Aligned_cols=114  Identities=13%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      -.++.+++++++.+|||||||. |-.++.+|+  ..|++||||++|++.++.|++.+++.| +.+++++..+|..+++  
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~--~~g~~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGW-GATMMRAVE--KYDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTT-SHHHHHHHH--HHCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHcCCCCCCEEEEecCcc-hHHHHHHHh--cCCcceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhhhccc--
Confidence            3445566789999999999996 566788888  368999999999999999999999999 7999999999987654  


Q ss_pred             CCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       +.||.|+.--.. ++....+..+++.+.+.|||||++++.+
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence             579998754333 5555677899999999999999999855

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.61  E-value=9e-16  Score=134.27  Aligned_cols=107  Identities=18%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-------CC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-------LG  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-------~~  201 (284)
                      .++++||+||+| .|+|+++||+....+++|+++|+|++..+.|++++++.| +.++|++++||+.+....       .+
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-cccceeeeehHHHHHHHHHHhccccCC
Confidence            478999999999 599999999866668999999999999999999999999 799999999999876543       34


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .||+||+++..    ..+...++.+.+.|+|||++++.+.
T Consensus       136 ~fD~iFiDa~k----~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         136 SYDFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             CBSEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ceeEEEeccch----hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            79999999875    7788999999999999999999985

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=4.8e-15  Score=125.40  Aligned_cols=111  Identities=20%  Similarity=0.216  Sum_probs=89.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++++|||||||+ |..++.+|+   .+.+|+++|+|+.+++.|+++++..+.-..+++++.+|..+.. ..+.||
T Consensus        47 ~l~~~~~~~VLDiGcG~-G~~~~~la~---~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~-~~~~fD  121 (194)
T d1dusa_          47 NVVVDKDDDILDLGCGY-GVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDRKYN  121 (194)
T ss_dssp             HCCCCTTCEEEEETCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-TTSCEE
T ss_pred             hCCcCCCCeEEEEeecC-ChhHHHHHh---hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh-ccCCce
Confidence            44568899999999997 566788887   5679999999999999999999998832347999999997633 346899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++.......+.-.++++++.++|+|||.+++..
T Consensus       122 ~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         122 KIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence            999876543334445789999999999999887644

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=2.3e-15  Score=133.68  Aligned_cols=115  Identities=18%  Similarity=0.214  Sum_probs=91.7

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      .++-.++=++.+.+. ..++++|||+|||+ |.-++.+++   .|++|+|+|+|+.|++.|+++++..|.   +++|.++
T Consensus       103 ~H~TT~l~l~~l~~~-~~~g~~VLDiGcGs-G~l~i~aa~---~g~~V~gvDis~~av~~A~~na~~n~~---~~~~~~~  174 (254)
T d2nxca1         103 HHETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNGV---RPRFLEG  174 (254)
T ss_dssp             CSHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTTC---CCEEEES
T ss_pred             ccchhhHHHHHHHhh-cCccCEEEEcccch-hHHHHHHHh---cCCEEEEEECChHHHHHHHHHHHHcCC---ceeEEec
Confidence            344455544455443 47889999999998 566788887   789999999999999999999999994   5689999


Q ss_pred             ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      |+.+.. ..+.||+|+.+..    .....++++.+.++|||||++++.
T Consensus       175 d~~~~~-~~~~fD~V~ani~----~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         175 SLEAAL-PFGPFDLLVANLY----AELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CHHHHG-GGCCEEEEEEECC----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc-cccccchhhhccc----cccHHHHHHHHHHhcCCCcEEEEE
Confidence            987643 3468999986533    366778999999999999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=5.7e-15  Score=131.29  Aligned_cols=135  Identities=17%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 036061          114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI  193 (284)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~  193 (284)
                      .+.+.-...+......++.+|||||||++ ..+..|++ ..++++|+|+|+|+.+++.|++.   .    .+++|+++|+
T Consensus        68 ~l~~~~~~~l~~~~~~~~~~iLDiGcG~G-~~~~~l~~-~~~~~~~~giD~s~~~~~~a~~~---~----~~~~~~~~d~  138 (268)
T d1p91a_          68 PLRDAIVAQLRERLDDKATAVLDIGCGEG-YYTHAFAD-ALPEITTFGLDVSKVAIKAAAKR---Y----PQVTFCVASS  138 (268)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEETCTTS-TTHHHHHH-TCTTSEEEEEESCHHHHHHHHHH---C----TTSEEEECCT
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEeCCCCc-HHHHHHHH-HCCCCEEEEecchHhhhhhhhcc---c----ccccceeeeh
Confidence            34444444455556788899999999985 55566776 57899999999999999999873   2    3789999999


Q ss_pred             ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-----CccccccCccCCCc-----cCCCcEEE
Q 036061          194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-----KGARAFLYPVVEKH-----DLLDFELL  263 (284)
Q Consensus       194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-----~glr~~lYp~v~~~-----dl~gfe~~  263 (284)
                      .+++...+.||+|+......        .+++++|.|||||.+++...     +.+|..+|+.....     .+.||+..
T Consensus       139 ~~l~~~~~sfD~v~~~~~~~--------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~~f~~~  210 (268)
T d1p91a_         139 HRLPFSDTSMDAIIRIYAPC--------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQ  210 (268)
T ss_dssp             TSCSBCTTCEEEEEEESCCC--------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEE
T ss_pred             hhccCCCCCEEEEeecCCHH--------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHhhccccccccchhhccCCcee
Confidence            99988888899998543221        15689999999999999874     23455667654432     33678765


Q ss_pred             EE
Q 036061          264 SV  265 (284)
Q Consensus       264 ~~  265 (284)
                      ..
T Consensus       211 ~~  212 (268)
T d1p91a_         211 QS  212 (268)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.59  E-value=5.3e-15  Score=130.09  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=91.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .....++|||||||+ |..++.+++ ..|+.+++++|+ |++++.|++.+...| +.++++|+.+|..+.  ...+||+|
T Consensus        77 d~~~~~~VLDvGcG~-G~~~~~la~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~rv~~~~~D~~~~--~~~~~D~v  150 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGK-GGFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFEP--LPRKADAI  150 (253)
T ss_dssp             CCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTSC--CSSCEEEE
T ss_pred             CCccCCEEEEeCCCC-CHHHHHHHH-hcceeEEEEccC-HHHHHHHHHHHHHhh-cccchhhccccchhh--cccchhhe
Confidence            346778999999997 566677777 578999999998 689999999999999 789999999998652  23579999


Q ss_pred             Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...+ .++.++..++|+++++.|||||+|++..
T Consensus       151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            977655 5677888899999999999999998865

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.1e-15  Score=129.62  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=80.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||||||+ |..+..|++   .|++|+|+|+|+++++.|++.    + .   ..++++|+.+++.+.+.||+|+
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~giD~s~~~l~~a~~~----~-~---~~~~~~~~~~l~~~~~~fD~ii  107 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREK----G-V---KNVVEAKAEDLPFPSGAFEAVL  107 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHH----T-C---SCEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc---cceEEEEeecccccccccccc----c-c---ccccccccccccccccccccee
Confidence            35788999999997 677788988   689999999999999999973    3 1   1367899999887777899998


Q ss_pred             eccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .... .+. .++..++++++.+.|||||.+++..
T Consensus       108 ~~~~~~~~-~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         108 ALGDVLSY-VENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             ECSSHHHH-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eecchhhh-hhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            6443 221 1456779999999999999999865

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.58  E-value=7.2e-15  Score=128.80  Aligned_cols=110  Identities=16%  Similarity=0.114  Sum_probs=87.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V  206 (284)
                      .+++++|||||||+|+. +..+++  ....+|+|||+|++|++.|++.....+ ...++.|+++|+...+... +.||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~-~~~~~~--~~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGD-LLKYER--AGIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTT-HHHHHH--HTCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHH-HHHHHH--cCCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchhhhcccccccceEE
Confidence            46789999999998655 456666  244689999999999999999998887 5678999999997655443 469999


Q ss_pred             Eecccc-c--CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALV-G--MSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v-~--~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++...+ .  .+.++...+++.+.+.|+|||++++...
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            865433 2  2445667899999999999999998653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=1.9e-14  Score=130.08  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=92.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      ++.+.+++++++|||||||-++ .++.+|++  .|++||||++|++.++.|++.++..| +.+++++...|...   ..+
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~G~-~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~-l~~~v~~~~~d~~~---~~~  125 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGWGS-TMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEE---FDE  125 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSH-HHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSC-CSSCEEEEECCGGG---CCC
T ss_pred             HHHhcCCCCCCEEEEecCcchH-HHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhc-cchhhhhhhhcccc---ccc
Confidence            4456678999999999999654 56778873  68999999999999999999999999 79999999999643   346


Q ss_pred             CccEEEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||.|+.-... ++..       +.+..+++.+.+.|||||++++.+
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            89999855433 4432       457899999999999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=3.9e-15  Score=132.89  Aligned_cols=150  Identities=16%  Similarity=0.235  Sum_probs=111.5

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEeccccccccCCCc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI-EFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ...+.++++|||+|||++ ..++.||+...++++|+++|+++++++.|++++++.+ ...++++|+++|+.+...+.+.|
T Consensus        91 ~l~i~PG~~VLE~G~GsG-~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~f  169 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSG-ALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV  169 (264)
T ss_dssp             HTTCCTTCEEEEECCTTS-HHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred             HhCCCCCCEEEecCcCCc-HHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCc
Confidence            446799999999999985 5567788866899999999999999999999998752 24679999999998876666789


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC---------cccc-ccCccCCCcc--CCCcEEE-EEecCCc
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK---------GARA-FLYPVVEKHD--LLDFELL-SVFHPTN  270 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~---------glr~-~lYp~v~~~d--l~gfe~~-~~~hP~~  270 (284)
                      |.||++.      ++..++++++.+.|||||++++-.+.         .++. ..|-.+..-+  .+.|++- ..++|..
T Consensus       170 DaV~ldl------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l~R~~~v~~~~~RP~~  243 (264)
T d1i9ga_         170 DRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGLAVRPQH  243 (264)
T ss_dssp             EEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCCCCCEEEETTEEEECS
T ss_pred             ceEEEec------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEEEEEEEeccCeeCCCC
Confidence            9999752      44568999999999999999986642         2321 1121111112  2457664 3467887


Q ss_pred             ceee-e--EEEEee
Q 036061          271 EVIN-S--VVLVRK  281 (284)
Q Consensus       271 ~v~n-s--vi~~r~  281 (284)
                      ..+. |  ++||||
T Consensus       244 ~~vgHTgfl~~ark  257 (264)
T d1i9ga_         244 SMRGHTAFLVATRR  257 (264)
T ss_dssp             CCCCCSCEEEEEEB
T ss_pred             CCccchHHHhhhhh
Confidence            7553 3  788998

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3e-15  Score=129.97  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=95.6

Q ss_pred             CCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061          107 PYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM  186 (284)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I  186 (284)
                      +..+.|.+-...   .+......++.+|||||||+ |.++..+|+  ..+.+||+||+|+++++.|++.++..+   .++
T Consensus        33 ~~m~~w~~~~~~---~la~~~~~~g~~VLdIGcG~-G~~a~~~a~--~~~~~v~~id~s~~~~~~a~~~~~~~~---~~~  103 (229)
T d1zx0a1          33 PVMERWETPYMH---ALAAAASSKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKV  103 (229)
T ss_dssp             EEEEGGGHHHHH---HHHHHHTTTCEEEEEECCTT-SHHHHHHHT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEE
T ss_pred             HHHHHHHHHHHH---HHHHhhccCCCeEEEeeccc-hHHHHHHHH--cCCCeEEEeCCCHHHHHHHHHHhhhcc---ccc
Confidence            444555443322   23333446789999999996 788889988  356799999999999999999988876   478


Q ss_pred             EEEEeccccccccC--CCccEEEeccc----ccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          187 KFVTCDIMQVKEKL--GEYDCIFLAAL----VGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       187 ~f~~~D~~~~~~~~--~~fD~V~~aa~----v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++.+|+.+....+  +.||.|+++..    ......+...+++++.|+|||||+|++-+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~  164 (229)
T d1zx0a1         104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  164 (229)
T ss_dssp             EEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEec
Confidence            99999987665443  57999987643    233457788999999999999999988553

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.56  E-value=9e-15  Score=129.17  Aligned_cols=112  Identities=14%  Similarity=0.166  Sum_probs=89.8

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG  201 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~  201 (284)
                      .|......++.+|||+|||++..|.-++.+   ...+|+++|+|+++++.|++.+...    ..++|+++|+.+++...+
T Consensus        85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~---~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  157 (254)
T d1xtpa_          85 FIASLPGHGTSRALDCGAGIGRITKNLLTK---LYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHH---HCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSS
T ss_pred             HHhhCCCCCCCeEEEecccCChhhHHHHhh---cCceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccCCC
Confidence            344445578889999999986555444444   3458999999999999999876543    368999999998877667


Q ss_pred             CccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          202 EYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       202 ~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .||+|++...+ +++.++..++++++.+.|+|||.+++..
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            89999977644 6677788899999999999999999976

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.4e-15  Score=128.73  Aligned_cols=106  Identities=20%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---CCCCeEEEEeccccccccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE---FEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~---l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ..+++.+||+||||+ |+.+.+||+...++++|+++|+++++++.|++++++.+.   ...+++++++|+.+...+.+.|
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f  151 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY  151 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence            458899999999997 677778888556789999999999999999999988662   1258999999998877777789


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |+|++.+.+..       +.+.+.+.|||||++++--
T Consensus       152 D~I~~~~~~~~-------ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         152 DAIHVGAAAPV-------VPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EEEEECSBBSS-------CCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhcchhh-------cCHHHHhhcCCCcEEEEEE
Confidence            99998876521       2346788999999999843

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.55  E-value=7.3e-15  Score=130.16  Aligned_cols=109  Identities=17%  Similarity=0.073  Sum_probs=90.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ...++.++++|||+|||++ ..++.||+...++++|+++|+++++++.|++++++.+ ...++++..+|+.+... ...|
T Consensus        79 ~~l~i~pG~rVLEiG~GsG-~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~~~~-~~~f  155 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGVGSG-NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIADFIS-DQMY  155 (250)
T ss_dssp             --CCCCTTCEEEEECCTTS-HHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTTCCC-SCCE
T ss_pred             HHcCCCCcCEEEEeeeeCc-HHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeecccc-ccee
Confidence            3446799999999999985 4557788755788999999999999999999999987 57899999999987643 3579


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |.||++.      .+..++++++.+.|||||++++-.+
T Consensus       156 D~V~ld~------p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         156 DAVIADI------PDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             EEEEECC------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             eeeeecC------CchHHHHHHHHHhcCCCceEEEEeC
Confidence            9999752      3445789999999999999998654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=9.2e-15  Score=126.47  Aligned_cols=108  Identities=12%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~  202 (284)
                      .+|++||+||||. |+|+++||++..++++|+++|+++++.+.|+++++..| ++++|+++.||..++...      .+.
T Consensus        55 ~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          55 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             hCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeeccccccccchhhcccccc
Confidence            5789999999995 89999999855678999999999999999999999999 799999999999886442      356


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+||+++...  .......+....+.|+|||++++.+
T Consensus       133 ~D~ifiD~~~~--~~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         133 LDMVFLDHWKD--RYLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             EEEEEECSCGG--GHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cceeeeccccc--ccccHHHHHHHhCccCCCcEEEEeC
Confidence            99999986531  1112234667788999999999876

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=2.5e-14  Score=124.95  Aligned_cols=160  Identities=17%  Similarity=0.152  Sum_probs=110.9

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      -++.-.-...+....++++++|||+|||+ |.++..||+...++++|+++|+|+.+++.+++++++.+    .+..+.+|
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d  130 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGD  130 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECC
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEE
Confidence            34443333333444678999999999997 67788899866789999999999999999999987765    57888888


Q ss_pred             cccccc---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-CccccccCccC---CCccC--CCcEEE
Q 036061          193 IMQVKE---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-KGARAFLYPVV---EKHDL--LDFELL  263 (284)
Q Consensus       193 ~~~~~~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-~glr~~lYp~v---~~~dl--~gfe~~  263 (284)
                      +.....   ....+|+||.+...   .++...+++++.+.|||||.+++... .......-|..   +...+  .||+++
T Consensus       131 ~~~~~~~~~~~~~vD~i~~d~~~---~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~ii  207 (227)
T d1g8aa_         131 ATKPEEYRALVPKVDVIFEDVAQ---PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVI  207 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCS---TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             CCCcccccccccceEEEEEEccc---cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            865322   22467888765332   36778899999999999999888541 11111111100   00111  589998


Q ss_pred             EEe--cCCcceeeeEEEEee
Q 036061          264 SVF--HPTNEVINSVVLVRK  281 (284)
Q Consensus       264 ~~~--hP~~~v~nsvi~~r~  281 (284)
                      ...  +|..+ ....|++||
T Consensus       208 e~i~L~p~~~-~H~~vv~rK  226 (227)
T d1g8aa_         208 ERLNLEPYEK-DHALFVVRK  226 (227)
T ss_dssp             EEEECTTTSS-SEEEEEEEC
T ss_pred             EEEcCCCCCC-ceEEEEEEe
Confidence            875  47644 457899998

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=3.3e-14  Score=124.21  Aligned_cols=160  Identities=13%  Similarity=0.063  Sum_probs=108.9

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      -+|+..-...+..+.+.++++|||+|||+ |.++..+|+ ..+++.|+|+|+||.+++.+++++.+.+    ++.++.+|
T Consensus        57 sklaA~i~~gl~~l~ikpG~~VLDlGcGs-G~~~~~la~-~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d  130 (230)
T d1g8sa_          57 SKLAAAIIKGLKVMPIKRDSKILYLGASA-GTTPSHVAD-IADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGD  130 (230)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEESCCS-SHHHHHHHH-HTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECC
T ss_pred             cHHHHHHHhhHHhCCCCCCCEEEEeCEEc-CHHHHHHHH-hCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEe
Confidence            35554443334444578999999999997 788899998 5788999999999999999999877654    68889999


Q ss_pred             cccccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCccCCCc----cC--CCcEEEE
Q 036061          193 IMQVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPVVEKH----DL--LDFELLS  264 (284)
Q Consensus       193 ~~~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~v~~~----dl--~gfe~~~  264 (284)
                      +....... ..+|++++...+. ..++...++.++.+.|||||.+++.. +.......-|.....    .|  .||+++.
T Consensus       131 ~~~~~~~~~~~~~v~~i~~~~~-~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         131 ANKPQEYANIVEKVDVIYEDVA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             eccCcccccccceeEEeecccc-chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            87654322 3467665544442 23677889999999999999988754 222111111111111    22  5999988


Q ss_pred             Eec--CCcceeeeEEEEe
Q 036061          265 VFH--PTNEVINSVVLVR  280 (284)
Q Consensus       265 ~~h--P~~~v~nsvi~~r  280 (284)
                      ..+  |..+ ...+||++
T Consensus       210 ~idL~py~~-~H~~vvg~  226 (230)
T d1g8sa_         210 EVDIEPFEK-DHVMFVGI  226 (230)
T ss_dssp             EEECTTTST-TEEEEEEE
T ss_pred             EecCCCCcC-CeEEEEEE
Confidence            754  6533 25566664

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=3.5e-14  Score=122.29  Aligned_cols=106  Identities=11%  Similarity=0.133  Sum_probs=84.0

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC---
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE---  202 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~---  202 (284)
                      ..++++++|||||||+ |.++..+|+ ..++++|+|+|+||.+++.|++.+++.+    ++.++++|+.+.......   
T Consensus        52 l~lkpg~~VLDlGcG~-G~~~~~la~-~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS-GTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHH-HTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCCCCCEEEEeCCcC-CHHHHHHHH-hccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCccccccccce
Confidence            4568999999999998 567888888 4567799999999999999999998865    799999999875443333   


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||.+ +.  ...++..++.++.+.|||||.+++-.
T Consensus       126 vd~v~~~-~~--~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQD-IA--QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEEC-CC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEec-cc--ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            4444432 21  23677789999999999999998754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=1.8e-14  Score=128.55  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=90.8

Q ss_pred             HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061          123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE  202 (284)
Q Consensus       123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~  202 (284)
                      +....+.++++|||+|||++ ..++.||+...++++|+++|+++++++.|++++++.| +.+++.+..+|+.+ ..+...
T Consensus        96 i~~l~i~pG~~VLDiG~GsG-~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~-~~~~~~  172 (266)
T d1o54a_          96 AMMLDVKEGDRIIDTGVGSG-AMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE-GFDEKD  172 (266)
T ss_dssp             HHHTTCCTTCEEEEECCTTS-HHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG-CCSCCS
T ss_pred             HHhhCCCCCCEEEECCCCCC-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEeccccc-cccccc
Confidence            34457799999999999985 5556788866789999999999999999999999999 78899999999765 333457


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||.||.+.      ++..++++++.+.|||||++++-.
T Consensus       173 ~D~V~~d~------p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         173 VDALFLDV------PDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             EEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeEecC------CCHHHHHHHHHhhcCCCCEEEEEe
Confidence            99998642      445679999999999999998754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=5.7e-14  Score=120.63  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=89.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~V~  207 (284)
                      +...|||||||+ |..++.+|+ ..|+..|+|+|+++.++..|.+.+++.|.  ++++|+++|+.++..  +.+.+|.|+
T Consensus        29 ~~PlvLeIGcG~-G~~~~~lA~-~~p~~~~iGiD~~~~~i~~a~~~~~~~~l--~Nv~~~~~Da~~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          29 DNPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVY  104 (204)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCceEEEEEecC-cHHHHHHHH-hCCCCcEEEeecchHHHHHHHHHHHHHhc--cCchhcccchhhhhcccCchhhhccc
Confidence            345899999997 677788888 58999999999999999999999999994  689999999987653  345799998


Q ss_pred             ecccccCChHHH-------HHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEK-------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k-------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.....+++...       ..+++.+++.|||||.|.+++
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            766555543321       479999999999999999987

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.51  E-value=8.9e-14  Score=122.82  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=90.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ....++|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.++..| +.++++++.+|..+ +. ..+||+|+
T Consensus        79 ~~~~~~vlDvG~G~-G~~~~~l~~-~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-~~~ri~~~~~d~~~-~~-p~~~D~v~  152 (256)
T d1qzza2          79 WSAVRHVLDVGGGN-GGMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-PL-PVTADVVL  152 (256)
T ss_dssp             CTTCCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CC-SCCEEEEE
T ss_pred             CccCCEEEEECCCC-CHHHHHHHH-hhcCcEEEEecC-hHHHHHHHHHHhhcC-Ccceeeeeeeeccc-cc-cccchhhh
Confidence            36678999999997 556677777 579999999998 789999999999999 78999999999865 22 24699998


Q ss_pred             ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...+ .++.++..++|+++++.|||||+|++..
T Consensus       153 ~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            77654 6788888999999999999999988865

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.48  E-value=3.5e-14  Score=123.01  Aligned_cols=111  Identities=15%  Similarity=0.161  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061          118 LEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK  197 (284)
Q Consensus       118 ~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~  197 (284)
                      ....++....++++.+||+||||+ |+.+.+||+  ..|.+|++||++++.++.|++++++.|.  ++++++++|+.+..
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGs-GY~taila~--l~g~~V~~ie~~~~l~~~a~~~l~~~g~--~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGS-GWNAALISE--IVKTDVYTIERIPELVEFAKRNLERAGV--KNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTT-SHHHHHHHH--HHCSCEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCC
T ss_pred             hHHHHHHhhccCccceEEEecCCC-ChhHHHHHH--hhCceeEEEeccHHHHHHHHHHHHHcCC--ceeEEEECccccCC
Confidence            344455555789999999999997 677778887  3478899999999999999999999995  79999999998866


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...+.||.|++.+.+..       +-+.+.+.|+|||++++--
T Consensus       141 ~~~~pfD~Iiv~~a~~~-------ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         141 PPKAPYDVIIVTAGAPK-------IPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGGCCEEEEEECSBBSS-------CCHHHHHTEEEEEEEEEEE
T ss_pred             cccCcceeEEeeccccc-------CCHHHHHhcCCCCEEEEEE
Confidence            66678999998877621       1134667899999998743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.3e-14  Score=121.69  Aligned_cols=111  Identities=15%  Similarity=0.236  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC---------------------
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKR---------------------  185 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~---------------------  185 (284)
                      +..++.+|||||||++.++ +.+|+  ..+.+|+|+|+|+.+++.|++.++..+. .-.                     
T Consensus        48 ~~~~g~~vLDlGcG~G~~~-~~~~~--~~~~~v~giD~S~~~i~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  123 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQ-VLAAC--DSFQDITLSDFTDRNREELEKWLKKEPG-AYDWTPAVKFACELEGNSGRWEEK  123 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGG-GTTGG--GTEEEEEEEESCHHHHHHHHHHHHTCTT-CCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             cCCCCCEEEEECCCCCHhH-HHHhc--cccCcEEEecCCHHHHHHHHHHHhhccc-cchhhhHHHHHHHhccccchHHHH
Confidence            4567889999999997665 44555  2344799999999999999999887652 111                     


Q ss_pred             -------e-EEEEecc----ccccccCCCccEEEecccc---cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          186 -------M-KFVTCDI----MQVKEKLGEYDCIFLAALV---GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       186 -------I-~f~~~D~----~~~~~~~~~fD~V~~aa~v---~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                             + .....++    ...+...+.||+|+....+   +...++...+++++.+.|||||.+++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                   0 0111111    1112334579999864432   33446788999999999999999999774

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.46  E-value=1.1e-13  Score=120.67  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      .++....+.++.+||+||||+ |+.+.+||+   .+.+|+++|+++++++.|+++....    .+++++++|+.......
T Consensus        61 ~ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~---l~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~  132 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGI-GYYTALIAE---IVDKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEE  132 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGG
T ss_pred             HHHHHhhhcccceEEEecCCC-CHHHHHHHH---HhcccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhh
Confidence            345555779999999999997 566667888   5689999999999999999987653    48999999987755555


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +.||.|++.+.+.       .+.+.+.+.|+|||+|++--+
T Consensus       133 ~pfD~Iiv~~a~~-------~ip~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         133 KPYDRVVVWATAP-------TLLCKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             CCEEEEEESSBBS-------SCCHHHHHTEEEEEEEEEEEC
T ss_pred             hhHHHHHhhcchh-------hhhHHHHHhcCCCCEEEEEEc
Confidence            6899999877652       133567789999999988543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.46  E-value=9.6e-14  Score=119.50  Aligned_cols=100  Identities=16%  Similarity=0.252  Sum_probs=80.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+++|||||||++ ..+..+++   .|.+|+|||+|+++++.|++.   .+   ++++|+++|+.+... .+.||+|++
T Consensus        19 ~~~~~VLDiGcG~G-~~~~~l~~---~g~~v~giD~s~~~i~~a~~~---~~---~~~~~~~~~~~~~~~-~~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFKG-DFTSRLQE---HFNDITCVEASEEAISHAQGR---LK---DGITYIHSRFEDAQL-PRRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTTS-HHHHHHTT---TCSCEEEEESCHHHHHHHHHH---SC---SCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCcEEEEeCCCc-HHHHHHHH---cCCeEEEEeCcHHHhhhhhcc---cc---ccccccccccccccc-ccccccccc
Confidence            46779999999985 55677877   678999999999999999974   33   479999999987665 368999986


Q ss_pred             cccc-cCChHHHHHHHHHHH-hhcCCCcEEEEEec
Q 036061          209 AALV-GMSKEEKVKIIKHIR-KYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~-~~l~pGg~lv~r~~  241 (284)
                      ...+ ++  ++..+++.++. ++|+|||.+++..+
T Consensus        88 ~~vleh~--~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          88 THVLEHI--DDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             ESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cceeEec--CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            6544 33  56678899998 78999999998754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.8e-14  Score=127.75  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC---------CCCCCeEEEEeccc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI---------EFEKRMKFVTCDIM  194 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G---------~l~~~I~f~~~D~~  194 (284)
                      ....+.++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.+         ...++++|.++|+.
T Consensus        92 ~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~  170 (324)
T d2b25a1          92 SMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS  170 (324)
T ss_dssp             HHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred             HHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence            344679999999999998 55567888866789999999999999999999998642         14579999999998


Q ss_pred             cccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +....+  ..||.||++-      ++...+++++.+.|||||+|++-.
T Consensus       171 ~~~~~~~~~~fD~V~LD~------p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         171 GATEDIKSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             CCC-------EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hcccccCCCCcceEeecC------cCHHHHHHHHHHhccCCCEEEEEe
Confidence            765543  3699999752      233568999999999999999855

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.3e-13  Score=123.40  Aligned_cols=141  Identities=18%  Similarity=0.220  Sum_probs=104.8

Q ss_pred             CCCccccc---ccCCCcchhhhhh----HHHHHHHHhc----CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC
Q 036061           96 TPQPLNNL---NLFPYYGNYVKLA----NLEYRILDEN----GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI  164 (284)
Q Consensus        96 ~~~p~~~L---~~fpy~~ny~~l~----~~E~~~l~~~----~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi  164 (284)
                      ...|++++   ..|..++.++.-.    |.|++.|...    ....+.+|||+|||++. -++.+|+ ..|+++|+++|+
T Consensus        63 ~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~-I~i~la~-~~p~~~v~avDi  140 (274)
T d2b3ta1          63 DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGA-IALALAS-ERPDCEIIAVDR  140 (274)
T ss_dssp             TTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSH-HHHHHHH-HCTTSEEEEECS
T ss_pred             cCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhH-HHHHHHh-hCCcceeeeccc
Confidence            35688888   4566556655433    3355544433    34677899999999854 4666776 588999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc-cccCC-h----------------------HHHH
Q 036061          165 DEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMS-K----------------------EEKV  220 (284)
Q Consensus       165 d~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~-~----------------------~~k~  220 (284)
                      |++|++.|+++++++| + ++|+|+++|..+... ...||+|+.+. ++... .                      ....
T Consensus       141 s~~Al~~A~~Na~~~~-~-~~v~~~~~d~~~~~~-~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~  217 (274)
T d2b3ta1         141 MPDAVSLAQRNAQHLA-I-KNIHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV  217 (274)
T ss_dssp             SHHHHHHHHHHHHHHT-C-CSEEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHH
T ss_pred             hhHHHhHHHHHHHHhC-c-ccceeeecccccccC-CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHH
Confidence            9999999999999999 4 579999999876433 24799999774 34211 0                      1236


Q ss_pred             HHHHHHHhhcCCCcEEEEEec
Q 036061          221 KIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       221 ~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +++++..++|+|||.+++..+
T Consensus       218 ~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         218 HIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             HHHHHHGGGEEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCCEEEEEEC
Confidence            799999999999999999764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.8e-13  Score=115.49  Aligned_cols=95  Identities=14%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++.+|||||||++ ..+..++       +++|||+|+.+++.|++         .+++|+++|+.+++...+.||+|+.
T Consensus        35 ~~~~~vLDiGcG~G-~~~~~~~-------~~~giD~s~~~~~~a~~---------~~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          35 LPEGRGVEIGVGTG-RFAVPLK-------IKIGVEPSERMAEIARK---------RGVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             CCSSCEEEETCTTS-TTHHHHT-------CCEEEESCHHHHHHHHH---------TTCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCc-ccccccc-------eEEEEeCChhhcccccc---------ccccccccccccccccccccccccc
Confidence            35669999999985 4444443       36899999999999987         2579999999998877778999987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ...+.. .+++.++++++.+.|+|||.+++...
T Consensus        98 ~~~l~h-~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          98 VTTICF-VDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             ESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccc-ccccccchhhhhhcCCCCceEEEEec
Confidence            654422 24677899999999999999999774

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-13  Score=116.76  Aligned_cols=120  Identities=17%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC------------
Q 036061          118 LEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKR------------  185 (284)
Q Consensus       118 ~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~------------  185 (284)
                      .++..+..-+...+.+||||||||+-++.+.+++   ...+|+++|+|+.+++.+++.+++.+. .-.            
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~-~~d~~~~~~~~~~~~  117 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPG-AFNWSMYSQHACLIE  117 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTT-CCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcc-cccchhhhhhhhhhc
Confidence            3444444456678999999999996565444444   456899999999999999998876542 111            


Q ss_pred             -----------------eEEEEecccccc------ccCCCccEEEeccc---ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          186 -----------------MKFVTCDIMQVK------EKLGEYDCIFLAAL---VGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       186 -----------------I~f~~~D~~~~~------~~~~~fD~V~~aa~---v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                                       -.....|+..-.      ...+.||+|+....   +..+.++..+++++++++|||||.|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~  197 (263)
T d2g72a1         118 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  197 (263)
T ss_dssp             CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                             123445554211      12246999986543   2334567889999999999999999997


Q ss_pred             ec
Q 036061          240 SA  241 (284)
Q Consensus       240 ~~  241 (284)
                      ..
T Consensus       198 ~~  199 (263)
T d2g72a1         198 GA  199 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            73

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.4e-13  Score=119.03  Aligned_cols=107  Identities=14%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC---CCeEEEEeccccccc---cCCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE---KRMKFVTCDIMQVKE---KLGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~---~~I~f~~~D~~~~~~---~~~~  202 (284)
                      .++++|||||||+ |..++.||+   .|++|+|+|+|++|++.|++.....+. .   .+..+..+|......   ....
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~---~g~~v~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (292)
T d1xvaa_          55 HGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRRK-EPAFDKWVIEEANWLTLDKDVPAGDG  129 (292)
T ss_dssp             TTCCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTT-SHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             cCCCEEEEecCCC-cHHHHHHHH---cCCeeeeccCchHHHHHHHHHHHhccc-ccccceeeeeeccccccccccCCCCC
Confidence            4578999999997 566788898   689999999999999999999887662 2   233455555443221   1247


Q ss_pred             ccEEEecc--cccC-----ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAA--LVGM-----SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa--~v~~-----~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||.|++..  +-++     +.++...+++++.++|||||+|++..
T Consensus       130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            99998543  2122     23567889999999999999999965

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.38  E-value=3.1e-12  Score=109.61  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCccEEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD~V~  207 (284)
                      ....|||||||. |..++.+|+ ..|+..++|+|+++.++..|.+.+.+.|.  ++++|+++|+.++...  ...+|.|+
T Consensus        31 ~~plvLdIGcG~-G~~~~~lA~-~~p~~~~iGid~~~~~v~~a~~~~~~~~l--~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCeEEEEeccC-CHHHHHHHH-HCCCCceEEEeccHHHHHHHHHhhhhhcc--ccceeeecCHHHHhhhccCCceehhc
Confidence            345899999996 667788888 58999999999999999999999999994  6899999999887643  34699998


Q ss_pred             ecccccCChHH--H-----HHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEE--K-----VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~--k-----~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +...-.|++..  |     ..+++.+++.|||||.|.+.+
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            66544454322  1     579999999999999999877

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.3e-12  Score=118.94  Aligned_cols=103  Identities=18%  Similarity=0.296  Sum_probs=84.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++|||||||+ |.-++.+|+   .| .+|+++|.|+ +++.|++.+++.| +.++++++++|+.++..+...||+|+
T Consensus        37 ~~~~~VLDlGcGt-G~ls~~aa~---~Ga~~V~avd~s~-~~~~a~~~~~~~~-~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-GILSMFAAK---HGAKHVIGVDMSS-IIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TCCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             CCcCEEEEeCCCC-CHHHHHHHH---hCCCEEEEEeCCH-HHHHHHHHHHHhC-ccccceEEEeehhhccCcccceeEEE
Confidence            4789999999997 455688888   45 4899999996 6789999999999 78999999999998876667899998


Q ss_pred             ecccc--cCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          208 LAALV--GMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       208 ~aa~v--~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      .....  .........++..+.+.|||||+++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            65332  2234567789999999999999986

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=2.4e-12  Score=117.44  Aligned_cols=110  Identities=21%  Similarity=0.156  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~  202 (284)
                      ...++++|||+|||+++++ +.+|+  ....+|+++|+|+++++.|+++++..| +.++++|+++|+.+...    ....
T Consensus       142 ~~~~g~~VLDl~~g~G~~s-i~~a~--~ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFA-IHAAI--AGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHH-HHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hcCCCCeeecccCcccchh-hhhhh--cCCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhhhhHHHHhccCC
Confidence            3478899999999986655 66666  223489999999999999999999999 78899999999987543    2347


Q ss_pred             ccEEEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ||+|+++.-- ....       ..+.+++....+.|+|||+|++-+
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999987642 1111       235678899999999999999876

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=1e-12  Score=119.72  Aligned_cols=107  Identities=13%  Similarity=0.101  Sum_probs=86.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD  204 (284)
                      .++++|||+|||+++++ +.+|+   .+.+|+++|+|+.++++|+++++..| + ++++|+++|+.++..    ....||
T Consensus       144 ~~g~rVLDl~~gtG~~s-~~~a~---g~~~V~~vD~s~~al~~a~~n~~~ng-l-~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFA-LHLAL---GFREVVAVDSSAEALRRAEENARLNG-L-GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHH-HHHHH---HEEEEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHH-HHHHh---cCCcEEeecchHHHHHHHHHHHHHcC-C-CCcceeeccHHHHhhhhHhhhcCCC
Confidence            46899999999997775 67777   67899999999999999999999999 4 579999999987543    234799


Q ss_pred             EEEecccc-cCC-------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALV-GMS-------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v-~~~-------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++.-. +..       .....+++....+.|+|||.|++-+-
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99987632 111       13346789999999999999999763

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7e-12  Score=114.38  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCCCCeEEEEecc
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFEKRMKFVTCDI  193 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~~~I~f~~~D~  193 (284)
                      .++....++++++|||||||. |..++.+|+ ..+..+++|||+++.+++.|++..+..       |.-..+|+|++||+
T Consensus       142 ~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~-~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         142 QMIDEIKMTDDDLFVDLGSGV-GQVVLQVAA-ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHSCCCTTCEEEEETCTT-SHHHHHHHH-HCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHcCCCCCCEEEEcCCCC-CHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            355666789999999999997 555677776 345568999999999999999887653       32235799999999


Q ss_pred             ccccccCC--CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          194 MQVKEKLG--EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       194 ~~~~~~~~--~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .+.+....  +.|+||+.....  .++..+.+.++.+.|||||+++.-
T Consensus       220 ~~~~~~~~~~~advi~~~~~~f--~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFAF--GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTTT--CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccccCcceEEEEcceec--chHHHHHHHHHHHhCCCCcEEEEe
Confidence            87654322  358888765542  266778899999999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.7e-12  Score=116.26  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=84.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++++|||||||+ |.-++++|+   .| .+|+++|.|+. ...|++++++.| +.++|+++++|+.++..+...||+|+
T Consensus        32 ~~~~~VLDiGcG~-G~ls~~aa~---~Ga~~V~avd~s~~-~~~a~~~~~~n~-~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          32 FKDKVVLDVGSGT-GILCMFAAK---AGARKVIGIECSSI-SDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECSTT-HHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCcCEEEEEecCC-cHHHHHHHH---hCCCEEEEEcCcHH-HhhhhhHHHHhC-CccccceEeccHHHcccccceeEEEe
Confidence            4689999999997 566788888   45 47999999975 578888899999 78999999999999877767899998


Q ss_pred             ecccc--cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALV--GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v--~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .....  .........++..+.+.|+|||.++-
T Consensus       106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            65332  12234567899999999999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.3e-12  Score=113.47  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=82.0

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhc-----CCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEecccccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNH-----LKSTHFDNFDIDEAANDVARQIVSSDIEF----EKRMKFVTCDIMQVK  197 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~-----~~g~~V~~iDid~~ai~~Ar~~~~~~G~l----~~~I~f~~~D~~~~~  197 (284)
                      .++++.+||+||||+ |+.+.+||+..     .++.+|++||++++.++.|++++.+.+ +    -.+++++++|+.+..
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~-~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcc-hhhcCccEEEEEeccccccc
Confidence            457899999999997 67777787732     235699999999999999999876543 1    158999999998766


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.+.||.|++.+.+..       +-+.+.+.|+|||++++--
T Consensus       155 ~~~~~fD~Iiv~~a~~~-------~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPD-------TPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GGGCSEEEEEECSCBSS-------CCHHHHHTEEEEEEEEEEE
T ss_pred             ccccceeeEEEEeechh-------chHHHHHhcCCCcEEEEEE
Confidence            66678999998877621       2245778999999998844

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.32  E-value=2.8e-12  Score=104.56  Aligned_cols=106  Identities=14%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V  206 (284)
                      -.+++|||+|||++.++.- .++   .| .+|+++|+|+++++.++++++..| +.++++++++|+.+.... .++||+|
T Consensus        13 ~~g~~vlDl~~GtG~~~ie-a~~---rga~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~~~~l~~~~~~fDiI   87 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIE-AVS---RGMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLV   87 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHH-HHH---TTCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             CCCCeEEEcCCccCHHHHH-HHH---hCcceeeeehhchhhhhhhhhhhhhcc-cccchhhhccccccccccccccccee
Confidence            4689999999998766543 444   34 489999999999999999999999 788999999999876433 3579999


Q ss_pred             EecccccCChHHHHHHHHHHHh--hcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~  241 (284)
                      |++..-  ......+.++.+..  .|+|||.+++...
T Consensus        88 f~DPPy--~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          88 FLDPPY--AKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             EECCSS--HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Eechhh--ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            998532  12455677777754  5999999999764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=3.1e-12  Score=113.43  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++.+|||+|||.++++ +.+|+  ..+++|+++|+||.|++.++++++..| ++++|+++++|+.++... +.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~-l~~a~--~~~~~V~avd~n~~a~~~~~~N~~~n~-l~~~v~~~~~D~~~~~~~-~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLS-LPIAV--YGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGE-NIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTH-HHHHH--HTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred             cCCccEEEECcceEcHHH-HHHHH--hCCcEEEEecCCHHHHHHHHHHHHHhC-CCceEEEEEcchHHhccC-CCCCEEE
Confidence            478999999999986654 66777  255799999999999999999999999 799999999999887653 5799998


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +...     ....++++...+.++|||++.+.
T Consensus       180 ~~~p-----~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         180 MGYV-----VRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ECCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence            7643     22245778888999999998654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.7e-12  Score=113.10  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ..++++|||||||+ |.-++++|+   .| .+|+++|.|+.+. .|++.+++.| ..++|+++++|+.++..+...||+|
T Consensus        33 ~~~~~~VLDiGcG~-G~lsl~aa~---~Ga~~V~aid~s~~~~-~a~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          33 IFKDKVVLDVGCGT-GILSMFAAK---AGAKKVLGVDQSEILY-QAMDIIRLNK-LEDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             GTTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEESSTHHH-HHHHHHHHTT-CTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             cCCcCEEEEECCCC-CHHHHHHHH---cCCCEEEEEeCHHHHH-HHHHHHHHhC-CCccceEEEeeHHHhcCccccceEE
Confidence            35789999999997 566788888   45 4899999999875 5777778888 6899999999999987777789999


Q ss_pred             Eecccc--cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          207 FLAALV--GMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       207 ~~aa~v--~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +....-  .........++....+.|+|||+++-
T Consensus       107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            865332  22223456778888899999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=6.5e-11  Score=105.46  Aligned_cols=142  Identities=19%  Similarity=0.219  Sum_probs=99.4

Q ss_pred             CCccccc---ccCCCcchhhhhh----HHHHHHHHhcC-----CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC
Q 036061           97 PQPLNNL---NLFPYYGNYVKLA----NLEYRILDENG-----VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI  164 (284)
Q Consensus        97 ~~p~~~L---~~fpy~~ny~~l~----~~E~~~l~~~~-----~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi  164 (284)
                      ..|++++   ..|..++.++.-.    |.|++.|....     ..+..+|+|+|||.+. -++.+|+  .++++|+++|+
T Consensus        65 ~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~-i~~~la~--~~~~~v~a~Di  141 (271)
T d1nv8a_          65 GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGA-IGVSVAK--FSDAIVFATDV  141 (271)
T ss_dssp             TCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSH-HHHHHHH--HSSCEEEEEES
T ss_pred             CCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeeh-hhhhhhh--cccceeeechh
Confidence            4688888   4566666665433    33555554432     1456799999999754 4555666  58999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEEEecc-cccCC----h----HHH---------HHHH-H
Q 036061          165 DEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMS----K----EEK---------VKII-K  224 (284)
Q Consensus       165 d~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~----~----~~k---------~~il-~  224 (284)
                      |++|++.|++++++.| +.+++.++.+|..+.... .+.||+|+.+. ++..+    .    +++         ..++ +
T Consensus       142 s~~Al~~A~~Na~~~~-~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~  220 (271)
T d1nv8a_         142 SSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE  220 (271)
T ss_dssp             CHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHHcC-CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHH
Confidence            9999999999999999 789999999998875443 35899999774 33110    0    111         1112 1


Q ss_pred             HHHhhcCCCcEEEEEecC
Q 036061          225 HIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       225 ~l~~~l~pGg~lv~r~~~  242 (284)
                      -+.++|+|||.+++..+.
T Consensus       221 i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         221 FFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             HHHHCCCTTCEEEEECCT
T ss_pred             HHHHhcCCCCEEEEEECH
Confidence            245789999999998753

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.19  E-value=4.1e-11  Score=108.98  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~  202 (284)
                      ..++++||+++||+++++ +.+|+   .|+ .|+++|+|+.++++|+++++..|.-.++++|+++|+.+...    .-..
T Consensus       142 ~~~g~~VLdlf~~~G~~s-l~aa~---~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~  217 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFS-VAAAM---GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT  217 (317)
T ss_dssp             TTBTCEEEEETCTTTHHH-HHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hhCCCceeecCCCCcHHH-HHHHh---CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence            467899999999998776 55555   555 79999999999999999999998323689999999987653    2246


Q ss_pred             ccEEEecccc-cCC-------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          203 YDCIFLAALV-GMS-------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       203 fD~V~~aa~v-~~~-------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ||+|+++.-. +.+       .....++++...+.|+|||+|++-+-
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9999988531 111       13457899999999999999999773

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=4.4e-11  Score=101.41  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=92.5

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KL  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~  200 (284)
                      ..+.++..++|++||++|.|...+.+  .++++|+|+|+|++|++.|++.+...+   +++++++++..++..     ..
T Consensus        19 l~~~~~~~~lD~t~G~Gghs~~il~~--~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~~~~~~~~   93 (192)
T d1m6ya2          19 LKPEDEKIILDCTVGEGGHSRAILEH--CPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGI   93 (192)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHH--CTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTC
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHhc--CCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHHHHHHcCC
Confidence            36788999999999999999887766  589999999999999999999998876   589999998776432     23


Q ss_pred             CCccEEEecccccC--------ChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          201 GEYDCIFLAALVGM--------SKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       201 ~~fD~V~~aa~v~~--------~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      +.||.|+++..+..        ......+.+....+.|+|||.+++-+.|.
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            57999998754411        22456789999999999999999988664

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=1.2e-10  Score=109.05  Aligned_cols=120  Identities=14%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-------CCCCCeEE-
Q 036061          117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI-------EFEKRMKF-  188 (284)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-------~l~~~I~f-  188 (284)
                      ..-..++.+..++++++|+|||||. |-.++.+|+ ..+..+|+|||+++.+++.|++.++..+       .-...+.+ 
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~-~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAAL-ECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHH-HHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            3444566677889999999999997 566677776 2344589999999999999999987642       11122333 


Q ss_pred             EEecccccc---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          189 VTCDIMQVK---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       189 ~~~D~~~~~---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|..+..   ..+..+|+|++.....  .++..+.+.++.+.|||||+|++..
T Consensus       281 ~~~~f~~~~~~d~~~~~adVV~inn~~f--~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         281 LKKSFVDNNRVAELIPQCDVILVNNFLF--DEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTTC--CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eeechhhccccccccccceEEEEecccC--chHHHHHHHHHHHhcCCCcEEEEec
Confidence            234333211   2234678999776542  3677889999999999999998743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.17  E-value=4.4e-11  Score=108.41  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc----CCCc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK----LGEY  203 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~----~~~f  203 (284)
                      .++.+||+++||++++ ++.+|+   .|++||+||.|+.+++.|+++++..| +. .+++|+++|+.+....    -..|
T Consensus       131 ~~~~rVLdlf~~tG~~-sl~aa~---~GA~V~~VD~s~~al~~a~~N~~ln~-~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         131 DRPLKVLNLFGYTGVA-SLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSCCEEEEETCTTCHH-HHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             cCCCeEEEecCCCcHH-HHHHHh---CCCeEEEEeChHHHHHHHHHhhhhhc-ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            5788999999998655 566777   78999999999999999999999988 44 4799999999876532    2479


Q ss_pred             cEEEecccc---c-----CC-hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALV---G-----MS-KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v---~-----~~-~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|+++.--   +     +. ...+..+++.+.+.++|||.+++-+.
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            999987421   1     11 13345677788899999997666553

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=3.2e-11  Score=100.15  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=76.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc--cccCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV--KEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~--~~~~~~fD~  205 (284)
                      ...+.+|||+|||++.++ +..++   .|++|+++|+|+++++.++++++..| +.+++.+..+|....  ......||+
T Consensus        39 ~~~g~~vLDl~~G~G~~~-i~a~~---~ga~vv~vD~~~~a~~~~~~N~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVG-LEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-LGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHH-HHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeccccchhh-hhhhh---ccchhhhcccCHHHHhhhhHHHHhhc-cccceeeeehhcccccccccCCccce
Confidence            467889999999986554 55555   68999999999999999999999999 677777766665321  122347999


Q ss_pred             EEecccccCChHHHHHHHHHH--HhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKEEKVKIIKHI--RKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l--~~~l~pGg~lv~r~~  241 (284)
                      ||++.--+.+..   +.+..+  ...++|||++++...
T Consensus       114 If~DPPY~~~~~---~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         114 AFMAPPYAMDLA---ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTTSCTT---HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eEEccccccCHH---HHHHHHHHcCCcCCCeEEEEEec
Confidence            999863322211   233333  247999999999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-10  Score=103.04  Aligned_cols=109  Identities=11%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhh---cC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE--EEeccccc-----
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKN---HL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKF--VTCDIMQV-----  196 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~---~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f--~~~D~~~~-----  196 (284)
                      +++.+|||||||++.++.. +++.   .+  .+..+++||+|+.+++.|++.+.... --..+.|  .+.++.+.     
T Consensus        39 ~~~~~VLDiGcG~G~~~~~-ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQ-ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHH-HHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHH-HHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhc
Confidence            3445899999999665544 3331   12  24578999999999999999987765 2345554  44444322     


Q ss_pred             -cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 -KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 -~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ....+.||+|+....+.. .++..++++++++.|+|||.+++..
T Consensus       117 ~~~~~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEE
Confidence             223457999987654422 2456789999999999999888765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.14  E-value=6.7e-11  Score=105.54  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=85.0

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEecccccccc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--------EFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--------~l~~~I~f~~~D~~~~~~~  199 (284)
                      ...|++||.||+|. |.++..+.+  .+..+|+.+||||+.++.|++.+....        .-..|++++.+|+.+....
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~--~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQ--HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTT--SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCceEEEecCCc-hHHHHHHHH--hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            36889999999995 566666665  355799999999999999999764221        0247999999999887666


Q ss_pred             CCCccEEEecccccCChHHH---HHHHHHHHhhcCCCcEEEEEec
Q 036061          200 LGEYDCIFLAALVGMSKEEK---VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k---~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+.||+|+++..-+.....+   .++++.+.++|+|||++++..+
T Consensus       147 ~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         147 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            67899999887543222222   6799999999999999998763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=6.9e-10  Score=94.24  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=74.5

Q ss_pred             hcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHH
Q 036061           93 FAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVA  172 (284)
Q Consensus        93 l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~A  172 (284)
                      +-..++|-..|+.|+= +  ..++..-.......+...+++|||+|||++.++ +.+++  ....+|+++|+|+++++.|
T Consensus        12 ~~~f~~~~~~l~qy~T-p--~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~-i~a~~--~g~~~v~~vdi~~~~~~~a   85 (201)
T d1wy7a1          12 LKGFKNPKVWLEQYRT-P--GNAASELLWLAYSLGDIEGKVVADLGAGTGVLS-YGALL--LGAKEVICVEVDKEAVDVL   85 (201)
T ss_dssp             SCCCSSCCGGGTCCCC-C--HHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHH-HHHHH--TTCSEEEEEESCHHHHHHH
T ss_pred             CCCCCCCCcccccCCC-C--HHHHHHHHHHHHhcCCCCCCEEEECcCcchHHH-HHHHH--cCCCEEEEEcCcHHHHHHH
Confidence            4444677666665431 1  122222122223345567899999999997665 55555  2335899999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          173 RQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       173 r~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      +++++..+.   +.++.++|+.++   .++||+|+++.-
T Consensus        86 ~~N~~~~~~---~~~~~~~d~~~~---~~~fD~Vi~nPP  118 (201)
T d1wy7a1          86 IENLGEFKG---KFKVFIGDVSEF---NSRVDIVIMNPP  118 (201)
T ss_dssp             HHHTGGGTT---SEEEEESCGGGC---CCCCSEEEECCC
T ss_pred             HHHHHHcCC---CceEEECchhhh---CCcCcEEEEcCc
Confidence            999998874   789999998764   357999998864

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=2.1e-10  Score=104.03  Aligned_cols=110  Identities=24%  Similarity=0.305  Sum_probs=85.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CC-CCCCeEEEEeccccccccC-CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IE-FEKRMKFVTCDIMQVKEKL-GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~-l~~~I~f~~~D~~~~~~~~-~~fD  204 (284)
                      ..|++||.||.|. |.++..+.+ +.+..+|+++||||+.++.|++.+...  +. -..|++++.+|+.+..... +.||
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~-~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCcceEEEeCCCc-hHHHHHHHh-cCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            6789999999995 666666766 467789999999999999999987542  10 2469999999999876544 4699


Q ss_pred             EEEeccc--ccCCh-HH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 CIFLAAL--VGMSK-EE---KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ~V~~aa~--v~~~~-~~---k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+++..  .+... ..   -.++++.+.+.|+|||++++..
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9998763  22211 11   2579999999999999999875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.03  E-value=3.1e-10  Score=95.08  Aligned_cols=107  Identities=13%  Similarity=0.129  Sum_probs=84.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD  204 (284)
                      ..+.+|||++||++.++.-.+.+   ...+|++||.|+++++.++++++..+ ..++++++++|+.+....    ...||
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr---Ga~~v~~ve~~~~a~~~~~~N~~~~~-~~~~~~i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCEEEEcccccccccceeeec---chhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccchhhhhhhcccCCCcc
Confidence            57899999999987776544443   33479999999999999999999999 688999999999875432    24799


Q ss_pred             EEEecccccCChHHHHHHHHHHHh--hcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~  241 (284)
                      +||++.--+  .....++++.+.+  .|+|||++++...
T Consensus       116 lIflDPPY~--~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         116 LVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             eEEechhhh--hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            999986321  2345677888865  5999999998764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=4.2e-10  Score=101.27  Aligned_cols=112  Identities=20%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC-CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      ..|++||.||.|. |.++..+.+ +.+..+|+++||||+.++.|++.+...  +.-..|++++.+|+.+..... +.||+
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHHh-cCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            6789999999996 556666666 566789999999999999999987532  112479999999999877654 36999


Q ss_pred             EEecccccCC-hHH---HHHHHHHHHhhcCCCcEEEEEecC
Q 036061          206 IFLAALVGMS-KEE---KVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       206 V~~aa~v~~~-~~~---k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      |+++..-+.. ...   -.++++.+.+.|+|||++++..+.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            9988642211 111   268999999999999999998753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.01  E-value=1.9e-09  Score=94.16  Aligned_cols=138  Identities=15%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..-.+|+|||||++.+ ++.+++ ..|+.+++.+|+- +.       ++..+ ..+||+++.+|..+   +....|++++
T Consensus        80 ~~~~~vlDiGGG~G~~-~~~l~~-~~P~l~~~v~Dlp-~v-------i~~~~-~~~ri~~~~gd~~~---~~p~~D~~~l  145 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRN-LELIIS-KYPLIKGINFDLP-QV-------IENAP-PLSGIEHVGGDMFA---SVPQGDAMIL  145 (244)
T ss_dssp             TTCSEEEEETCTTSHH-HHHHHH-HCTTCEEEEEECH-HH-------HTTCC-CCTTEEEEECCTTT---CCCCEEEEEE
T ss_pred             cCCcEEEEecCCCcHH-HHHHHH-HCCCCeEEEecch-hh-------hhccC-CCCCeEEecCCccc---ccccceEEEE
Confidence            5568999999998555 555665 4799999999984 33       34555 57899999999865   2345799987


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEec----Cc--cc------cc-cC-----ccCC--Cc---cC---CCcE
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRSA----KG--AR------AF-LY-----PVVE--KH---DL---LDFE  261 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~~----~g--lr------~~-lY-----p~v~--~~---dl---~gfe  261 (284)
                      ...+ .++.++..++|+++++.|+|||++++.+.    .+  ..      .+ +.     .-.+  .+   ++   .||+
T Consensus       146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~  225 (244)
T d1fp1d2         146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFS  225 (244)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCS
T ss_pred             ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCC
Confidence            7644 77889999999999999999999888662    11  00      00 00     0000  11   22   6999


Q ss_pred             EEEEecCCcceeeeEEEEee
Q 036061          262 LLSVFHPTNEVINSVVLVRK  281 (284)
Q Consensus       262 ~~~~~hP~~~v~nsvi~~r~  281 (284)
                      ...+..+..... |||-+||
T Consensus       226 ~v~v~~~~~~~~-~viE~~K  244 (244)
T d1fp1d2         226 KFQVACRAFNSL-GVMEFYK  244 (244)
T ss_dssp             EEEEEEEETTTE-EEEEEEC
T ss_pred             ceEEEecCCCCE-EEEEEeC
Confidence            888776543333 7998887

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.5e-10  Score=99.10  Aligned_cols=112  Identities=20%  Similarity=0.252  Sum_probs=84.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC-CCcc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL-GEYD  204 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~-~~fD  204 (284)
                      ...|++||.||.|. |.++..+.+ +.+..+|+.+||||+.++.|++.+...  ..-..|++++.+|+.+..... +.||
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~-~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  153 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHH-cCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence            46889999999996 566666666 456789999999999999999987431  112479999999998877543 4699


Q ss_pred             EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++..-+.....   ..++++.+.+.|+|||++++...
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            99988642111111   25789999999999999999874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.5e-09  Score=90.72  Aligned_cols=104  Identities=11%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~  208 (284)
                      .+.+|||++||++.++--.+.+   ...+|+.||+|+++++.++++++..+.  .+++++.+|+.++.... ..||+||+
T Consensus        43 ~~~~vLDlfaGsG~~giealsr---Ga~~v~~VE~~~~a~~~~k~N~~~~~~--~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec---CcceeEEEEEeechhhHHHHHHhhccc--cceeeeeecccccccccccccCEEEE
Confidence            5789999999986665444443   334899999999999999999999883  67899999998876543 36999999


Q ss_pred             cccccCChHHHHHHHHHHHh--hcCCCcEEEEEe
Q 036061          209 AALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~  240 (284)
                      +.--+  .....++++.+.+  .|+++|++++..
T Consensus       118 DPPY~--~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFR--RGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSS--TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cCccc--cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            86432  2345667777765  599999999975

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=1.5e-09  Score=97.40  Aligned_cols=112  Identities=21%  Similarity=0.348  Sum_probs=86.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC--CCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL--GEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~--~~f  203 (284)
                      ...|++||.||.|. |.++..+.+ +.+..+|+.+|||++.++.|++.+...  +.-..|++++.+|+.+.....  +.|
T Consensus        78 ~~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCcceEEecCCc-hHHHHHHHh-cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            46789999999996 566666666 456679999999999999999987421  113579999999998776433  369


Q ss_pred             cEEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+|++++.-+.....   -.++++.+.+.|+|||++++..+
T Consensus       156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            999988753221121   26799999999999999999764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.93  E-value=1.1e-09  Score=97.43  Aligned_cols=111  Identities=21%  Similarity=0.237  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CC-CCCCeEEEEeccccccccC-CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-IE-FEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~-l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      ..|++||.||.|. |.++..+.+ +.+..+|+.+||||+.++.|++.+... |. -..|++++.+|+....... ..||+
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~-~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHh-cCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            6789999999996 556666665 456689999999999999999987431 21 2469999999998766543 46999


Q ss_pred             EEecccc--cCChH-HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALV--GMSKE-EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v--~~~~~-~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..-  +.+.. --.++++.+.++|+|||+++...+
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            9988642  11110 135789999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.93  E-value=9.1e-10  Score=99.71  Aligned_cols=111  Identities=19%  Similarity=0.244  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEeccccccccC-CCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--EFEKRMKFVTCDIMQVKEKL-GEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--~l~~~I~f~~~D~~~~~~~~-~~fD~  205 (284)
                      ..|++||.||.|. |.++..+.+ +.+..+|+.+|||++.++.|++.+....  .-..|++++.+|+.+..... ..||+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk-~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHH-cCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            6789999999996 566666666 4556799999999999999999875321  12479999999998876543 46999


Q ss_pred             EEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEec
Q 036061          206 IFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       206 V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+++..-+....   --.++++.+.+.|+|||++++..+
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            998875311111   136789999999999999999864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=3.9e-09  Score=89.54  Aligned_cols=103  Identities=20%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             hcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHH
Q 036061           93 FAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVA  172 (284)
Q Consensus        93 l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~A  172 (284)
                      +...++|-..|+.|+=-.   +++..-...+...+.-.+++|||+|||++.+ ++.+++  ....+|+++|+|+++++.|
T Consensus        14 ~~~~~~~~~~leQy~T~~---~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l-~i~a~~--~ga~~V~~vDid~~a~~~a   87 (197)
T d1ne2a_          14 LQQQGNFKNYLEQYPTDA---STAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYL--LGAESVTAFDIDPDAIETA   87 (197)
T ss_dssp             SCCCC--------CCCCH---HHHHHHHHHHHHHTSSBTSEEEEETCTTCHH-HHHHHH--TTBSEEEEEESCHHHHHHH
T ss_pred             CCCCCCCCcccccCCCCH---HHHHHHHHHHHHcCCCCCCEEEEeCCCCcHH-HHHHHH--cCCCcccccccCHHHHHHH
Confidence            444567766666554212   2222222222333556789999999998654 566666  2335799999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          173 RQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       173 r~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      ++++       .+++|+++|+.+++   +.||+|+.+.-
T Consensus        88 r~N~-------~~~~~~~~D~~~l~---~~fD~Vi~NPP  116 (197)
T d1ne2a_          88 KRNC-------GGVNFMVADVSEIS---GKYDTWIMNPP  116 (197)
T ss_dssp             HHHC-------TTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             HHcc-------ccccEEEEehhhcC---CcceEEEeCcc
Confidence            9964       36799999997643   57999998753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.1e-09  Score=93.10  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------cCCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------KLGE  202 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~~~~  202 (284)
                      .+..+|||||||++.. ++.||+ ..++++|+|+|+|++|++.|+++++..+ +++++.++.++..+...      ..+.
T Consensus        60 ~~~~~~LDiGtGsg~I-~~~l~~-~~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T d2h00a1          60 STLRRGIDIGTGASCI-YPLLGA-TLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEII  136 (250)
T ss_dssp             CCCCEEEEESCTTTTH-HHHHHH-HHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             cccceEEEeCCCchHH-HHHHHH-hCCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHHhhhhhhhhcccCc
Confidence            4557999999998555 455666 3689999999999999999999999999 89999999877543221      1236


Q ss_pred             ccEEEecc
Q 036061          203 YDCIFLAA  210 (284)
Q Consensus       203 fD~V~~aa  210 (284)
                      ||+|+.+.
T Consensus       137 fD~ivsNP  144 (250)
T d2h00a1         137 YDFCMCNP  144 (250)
T ss_dssp             BSEEEECC
T ss_pred             eeEEEecC
Confidence            99998775

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4e-09  Score=90.17  Aligned_cols=136  Identities=15%  Similarity=0.192  Sum_probs=100.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++.+|+|||||+ |+.++.+|- +.|+.+|+.+|.+..-+..-++.++++| + ++++++++.+.+... ...||+|..-
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI-~~p~~~~~Lves~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~~~~-~~~fD~V~sR  139 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELK-L-ENIEPVQSRVEEFPS-EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-C-SSEEEEECCTTTSCC-CSCEEEEECS
T ss_pred             cCCceeeeeccC-Cceeeehhh-hcccceEEEEecchHHHHHHHHHHHHcC-C-cceeeeccchhhhcc-ccccceehhh
Confidence            457999999995 899999997 6899999999999999999999999999 4 589999999987543 3479999765


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccC-CCcEEEEE---ecCCcceeeeEEEEee
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDL-LDFELLSV---FHPTNEVINSVVLVRK  281 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl-~gfe~~~~---~hP~~~v~nsvi~~r~  281 (284)
                      |+     .+-..+++-..+.+++||.+++--+.....      +...+ .+|+...+   .-|..+--=+.|+.||
T Consensus       140 A~-----~~~~~ll~~~~~~l~~~g~~~~~KG~~~~e------El~~~~~~~~~~~~~~~~~p~~~~~R~iv~ikk  204 (207)
T d1jsxa_         140 AF-----ASLNDMVSWCHHLPGEQGRFYALKGQMPED------EIALLPEEYQVESVVKLQVPALDGERHLVVIKA  204 (207)
T ss_dssp             CS-----SSHHHHHHHHTTSEEEEEEEEEEESSCCHH------HHHTSCTTEEEEEEEEEECC--CCEEEEEEEEE
T ss_pred             hh-----cCHHHHHHHHHHhcCCCcEEEEECCCCHHH------HHHhhhcCCEEEEEEEecCCCCCCcEEEEEEEe
Confidence            55     455679999999999999998876532111      11122 46765433   2354443334666665

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.74  E-value=4.1e-08  Score=85.48  Aligned_cols=98  Identities=14%  Similarity=0.258  Sum_probs=77.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..-.+|+|||||.+ ..++.+++ .+|+.+++.+|+. +.       ++..+ ..+||+|+.+|..+   +...+|++++
T Consensus        79 ~~~~~vvDvGGG~G-~~~~~l~~-~~P~l~~~v~Dlp-~v-------i~~~~-~~~rv~~~~gD~f~---~~p~aD~~~l  144 (244)
T d1fp2a2          79 DGLESIVDVGGGTG-TTAKIICE-TFPKLKCIVFDRP-QV-------VENLS-GSNNLTYVGGDMFT---SIPNADAVLL  144 (244)
T ss_dssp             TTCSEEEEETCTTS-HHHHHHHH-HCTTCEEEEEECH-HH-------HTTCC-CBTTEEEEECCTTT---CCCCCSEEEE
T ss_pred             cCceEEEEecCCcc-HHHHHHHH-hCCCCeEEEecCH-HH-------HHhCc-ccCceEEEecCccc---CCCCCcEEEE
Confidence            34578999999974 55666666 5899999999994 33       44566 57899999999865   2346899987


Q ss_pred             cccc-cCChHHHHHHHHHHHhhcCCC---cEEEEEe
Q 036061          209 AALV-GMSKEEKVKIIKHIRKYMKDG---GVLLVRS  240 (284)
Q Consensus       209 aa~v-~~~~~~k~~il~~l~~~l~pG---g~lv~r~  240 (284)
                      ...+ .++.++..++|+++++.|+||   |++++..
T Consensus       145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            7654 788899999999999999998   6666644

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=5e-08  Score=87.99  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .+.++.+|||+++||+|=|+. +|......+.+++.|+++..+...+++++++|.  .++.+...|..........||.|
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~-l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~--~~i~~~~~d~~~~~~~~~~fD~I  189 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSY-LAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--LNVILFHSSSLHIGELNVEFDKI  189 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHH-HHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--CSEEEESSCGGGGGGGCCCEEEE
T ss_pred             cCCccceeeecccchhhhhHh-hhhhcccccceeeeccCHHHHHHHHHHHHHHHh--hccccccccccccccccccccEE
Confidence            568999999999999776654 555456678999999999999999999999994  67888889988766655689999


Q ss_pred             Eecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++--   |.   .++.               -.+++.+..+.+||||.+|+.+
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            988731   21   1111               1788999999999999999977

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=4.4e-08  Score=82.16  Aligned_cols=115  Identities=16%  Similarity=0.214  Sum_probs=79.1

Q ss_pred             CCCCEEEEeccCCChhHH----HHHHhh---cCCCcEEEEEeCChHHHHHHHHH------------------HHhcCC--
Q 036061          129 VNPKKVAFVGSGPMPLTS----IVMAKN---HLKSTHFDNFDIDEAANDVARQI------------------VSSDIE--  181 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~ta----i~LA~~---~~~g~~V~~iDid~~ai~~Ar~~------------------~~~~G~--  181 (284)
                      .++-||+.+|||+ |-.+    +++...   .....+|+|.|+|+.+++.|++-                  +.+.+.  
T Consensus        23 ~~~lrIwsaGCst-GeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          23 HGEYRVWSAAAST-GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             CSCEEEEESCCTT-THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             CCCeEEEEeCCCC-chhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence            4567999999997 4443    333321   11246899999999999999832                  222220  


Q ss_pred             ---------CCCCeEEEEeccccccc-cCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          182 ---------FEKRMKFVTCDIMQVKE-KLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       182 ---------l~~~I~f~~~D~~~~~~-~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                               +...++|...+..+... ..++||+|+.-. ++-++.+.+.++++.+++.|+|||.|++-.+..+
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~l  175 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF  175 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCccc
Confidence                     11345666666654322 346799999765 3467889999999999999999999998776544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.66  E-value=9.4e-08  Score=77.55  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc----c
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ----V  196 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~----~  196 (284)
                      ..+.+.+++++++|+.+|+|++|+.++.+|+  ..|++|+++|.+++..+.|++    +|   ....+..-+..+    .
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak--~~Ga~vi~v~~~~~r~~~a~~----~g---a~~~~~~~~~~~~~~~~   87 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAK--AYGAFVVCTARSPRRLEVAKN----CG---ADVTLVVDPAKEEESSI   87 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH----TT---CSEEEECCTTTSCHHHH
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHh--hhcccccccchHHHHHHHHHH----cC---CcEEEeccccccccchh
Confidence            3455667899999999999999999999999  468999999999999998887    34   233333221111    0


Q ss_pred             ----ccc-CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 ----KEK-LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ----~~~-~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          ... -..+|+||-+...       ...++...+.++|||++++-.
T Consensus        88 ~~~~~~~~g~g~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          88 IERIRSAIGDLPNVTIDCSGN-------EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             HHHHHHHSSSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             hhhhhcccccCCceeeecCCC-------hHHHHHHHHHHhcCCceEEEe
Confidence                111 1359999866542       246788889999999998865

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.61  E-value=1.5e-07  Score=78.19  Aligned_cols=108  Identities=9%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCI  206 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V  206 (284)
                      .+.+|||+-||++.++--.+.+   .-.+|+.||.|.++++..+++++.++.-.....+++.|+.+...   ....||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR---GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeee---cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence            5689999999998777666654   34589999999999999999999998323467888888766443   22369999


Q ss_pred             EecccccCChHHHHHHHHHHHh--hcCCCcEEEEEecC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~~  242 (284)
                      |++.--..  ....++++.+..  .++++|++++....
T Consensus       120 FlDPPY~~--~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDPPFHF--NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECCCSSS--CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EechhHhh--hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            99975322  456678888865  69999999998754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=1.2e-07  Score=82.48  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=87.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---CCCccEE
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK---LGEYDCI  206 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~---~~~fD~V  206 (284)
                      .+.+++|||||+ |+..+.||- ..|+.+|+-+|-+..-+..-+..++++|+  ++++++++.+.++...   ...||+|
T Consensus        70 ~~~~ilDiGSGa-GfPGi~laI-~~p~~~v~Lves~~KK~~FL~~v~~~L~L--~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGA-GFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQL--ENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSS-CTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHTC--SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCC-chHHHHHHH-hCCCccceeecchHHHHHHHHHHHHHhCC--CCcEEEeehhhhccccccccccceEE
Confidence            467999999995 899999987 58999999999999999999999999994  6899999998775432   2469999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +.=|.     ..-..+++-..+.+++||.+++--+.
T Consensus       146 ~sRAv-----a~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         146 TARAV-----ARLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             EEECC-----SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             EEhhh-----hCHHHHHHHHhhhcccCCEEEEECCC
Confidence            86555     34567999999999999999887654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.59  E-value=1.2e-07  Score=82.07  Aligned_cols=98  Identities=18%  Similarity=0.241  Sum_probs=75.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ....+|+|||||+ |.-++.+++ .+|+.+++.+|+.+.        ++... ..++++++.+|..+-   +...|++++
T Consensus        80 ~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dlp~v--------i~~~~-~~~r~~~~~~d~~~~---~P~ad~~~l  145 (243)
T d1kyza2          80 EGLKSLVDVGGGT-GAVINTIVS-KYPTIKGINFDLPHV--------IEDAP-SYPGVEHVGGDMFVS---IPKADAVFM  145 (243)
T ss_dssp             SSCSEEEEETCTT-SHHHHHHHH-HCTTSEEEEEECTTT--------TTTCC-CCTTEEEEECCTTTC---CCCCSCEEC
T ss_pred             cCCcEEEEecCCC-cHHHHHHHH-HCCCCeEEEcccHHh--------hhhcc-cCCceEEeccccccc---CCCcceEEE
Confidence            4457999999997 555666776 589999999999753        23344 467999999998652   234566666


Q ss_pred             ccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ... ..++.++..++|+++++.|+|||++++-.
T Consensus       146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         146 KWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            553 36788999999999999999999888754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.2e-07  Score=82.52  Aligned_cols=110  Identities=18%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDC  205 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~  205 (284)
                      .+.++.+|||+++||+|=|+.+ |. ...++.|+++|+|+..++..+++++++|.  +.+.....|...... ....||.
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~l-a~-l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--~~~~~~~~~~~~~~~~~~~~fd~  174 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHI-LE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDR  174 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHH-HH-HCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEE
T ss_pred             CccccceeEeccCccccchhhh-hh-hhhhhhhhhhhcchhhhhhHhhhhhcccc--cceeeeccccccchhcccccccE
Confidence            5688999999999999888654 44 35668999999999999999999999994  344444444332221 2246999


Q ss_pred             EEecccc---c---CChHHH---------------HHHHHHHHhhcCCCcEEEEEe
Q 036061          206 IFLAALV---G---MSKEEK---------------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       206 V~~aa~v---~---~~~~~k---------------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |++++--   |   -+++.|               .++|.+..+.+||||+||+.+
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            9988731   2   122222               789999999999999999987

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6e-07  Score=79.93  Aligned_cols=110  Identities=17%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~f  203 (284)
                      .+.++.+|||+++||+|=|+ .+|.....+..|+++|+|+..++..+++++++|.  +++.+...|...+....   ..|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~-~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~--~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTS-HLAALLKNQGKIFAFDLDAKRLASMATLLARAGV--SCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGSCTTCGGGTTE
T ss_pred             CCCccceEEecccchhhHHH-HHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc--cceeeeehhhhhhccccccccee
Confidence            56889999999999977654 4565455778999999999999999999999995  67999999988755432   469


Q ss_pred             cEEEecccc---cC---ChHH-----------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV---GM---SKEE-----------------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v---~~---~~~~-----------------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|++++--   |.   .++.                 ..+++.+.. .++|||.||+.+
T Consensus       168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT  226 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST  226 (293)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred             eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence            999988631   21   0010                 134566666 479999999876

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.7e-06  Score=78.11  Aligned_cols=96  Identities=14%  Similarity=0.085  Sum_probs=75.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~  202 (284)
                      ...++.+|+|+-||.+ .-++.||+   .+.+|+|||+++++++.|+++++..|.  ++++|+++|+.+....    ...
T Consensus       209 ~~~~~~~vlDLycG~G-~fsl~La~---~~~~V~gvE~~~~ai~~A~~na~~n~i--~n~~~~~~~~~~~~~~~~~~~~~  282 (358)
T d1uwva2         209 DVQPEDRVLDLFCGMG-NFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGL--QNVTFYHENLEEDVTKQPWAKNG  282 (358)
T ss_dssp             TCCTTCEEEEESCTTT-TTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             ccCCCceEEEeccccc-ccchhccc---cccEEEeccCcHHHHHHHHHhHHhccc--ccceeeecchhhhhhhhhhhhcc
Confidence            5678899999999965 44578888   778999999999999999999999995  6899999999875432    246


Q ss_pred             ccEEEecccc-cCChHHHHHHHHHHHhhcCCCc
Q 036061          203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGG  234 (284)
Q Consensus       203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg  234 (284)
                      ||+|+++.-= |+    . ++++.+.+. +|.-
T Consensus       283 ~d~vilDPPR~G~----~-~~~~~l~~~-~~~~  309 (358)
T d1uwva2         283 FDKVLLDPARAGA----A-GVMQQIIKL-EPIR  309 (358)
T ss_dssp             CSEEEECCCTTCC----H-HHHHHHHHH-CCSE
T ss_pred             CceEEeCCCCccH----H-HHHHHHHHc-CCCE
Confidence            9999999753 43    1 367777765 5543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.51  E-value=1.3e-07  Score=81.87  Aligned_cols=102  Identities=10%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cC--C
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KL--G  201 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~--~  201 (284)
                      .+|++||+||++. |.|++++|..   ..+.++|+++|+++.....+.      . ..++|+++.||..+...  ..  .
T Consensus        79 ~KPk~ILEIGv~~-GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~-~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          79 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S-DMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             hCCCEEEEECCCC-chHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------c-cccceeeeecccccHHHHHHHHhc
Confidence            3689999999986 6788888752   246799999999986543322      2 34799999999765322  22  2


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      .+|+||+++.. ........+  .+.+.|+|||.+++.+.
T Consensus       151 ~~dlIfID~~H-~~~~v~~~~--~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         151 AHPLIFIDNAH-ANTFNIMKW--AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSEEEEESSC-SSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred             CCCEEEEcCCc-chHHHHHHH--HHhcccCcCCEEEEEcC
Confidence            58999998763 222333333  36789999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4e-07  Score=74.05  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccccc
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVK  197 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~  197 (284)
                      .++.+..++++++|+.+|+|++|+.++.+|++  .|+ +|+++|.+++.++.|++    +|.   ...+...  |..+..
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~~~rl~~a~~----~Ga---~~~~~~~~~~~~~~~   87 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKE----IGA---DLVLQISKESPQEIA   87 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TTC---SEEEECSSCCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCCHHHHHHHHH----hCC---ccccccccccccccc
Confidence            34556678899999999999999999999993  566 89999999999998876    452   2222111  111111


Q ss_pred             ----c-cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          198 ----E-KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 ----~-~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                          . .-..+|+||-+...       ...++...+.+++||++++-..
T Consensus        88 ~~~~~~~g~g~Dvvid~~G~-------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          88 RKVEGQLGCKPEVTIECTGA-------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHHTSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccccCCCCceEEEeccCC-------chhHHHHHHHhcCCCEEEEEec
Confidence                0 11368999976543       3478899999999999988764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2.6e-08  Score=81.30  Aligned_cols=107  Identities=21%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-c
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-E  198 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-~  198 (284)
                      +.++.+.+.+++++|+.+|+|++|..++.+|+  ..|++|+++|.+++.++.|++    +|.   .-.+...+-.++. .
T Consensus        17 ~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak--~~G~~vi~~~~~~~k~~~a~~----lGa---~~~i~~~~~~~~~~~   87 (168)
T d1piwa2          17 YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK--AMGAETYVISRSSRKREDAMK----MGA---DHYIATLEEGDWGEK   87 (168)
T ss_dssp             HHHHHHTTCSTTCEEEEECCSHHHHHHHHHHH--HHTCEEEEEESSSTTHHHHHH----HTC---SEEEEGGGTSCHHHH
T ss_pred             HHHHHHhCcCCCCEEEEECCCCcchhHHHHhh--hccccccccccchhHHHHhhc----cCC---cEEeeccchHHHHHh
Confidence            45566678899999999999999999999998  368999999999999888876    462   2222212211222 1


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.||+|+.....+.+     ..++...+.++|||++++-.
T Consensus        88 ~~~~~d~vi~~~~~~~~-----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          88 YFDTFDLIVVCASSLTD-----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             SCSCEEEEEECCSCSTT-----CCTTTGGGGEEEEEEEEECC
T ss_pred             hhcccceEEEEecCCcc-----chHHHHHHHhhccceEEEec
Confidence            23469999865332111     12456788999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.41  E-value=5.9e-08  Score=80.00  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=73.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-c-
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-E-  198 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-~-  198 (284)
                      .+....++++++||.+|||++|+.++.+|+  ..|+ +|+++|.+++..+.|++    +|. ..-+.+...+..+.. . 
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak--~~Ga~~Vi~~d~~~~r~~~a~~----lGa-~~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAK--LRGAGRIIGVGSRPICVEAAKF----YGA-TDILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSCEEEECCCHHHHHHHHH----HTC-SEEECGGGSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhh--cccccccccccchhhhHHHHHh----hCc-cccccccchhHHHHHHHH
Confidence            445567899999999999999999999999  4676 79999999999888875    452 111111111111101 1 


Q ss_pred             -cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 -KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 -~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                       .-..||+||.+...       ...+++..+.++|||++++-.
T Consensus        92 t~g~G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          92 TNGKGVDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             hhccCcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence             11359999976543       135678889999999999865

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.1e-06  Score=73.21  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=84.4

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cC
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KL  200 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~  200 (284)
                      +.+.++..++|..+|.+|.|...|.+    +++|+|+|+||+|++.|++.      ..+++++++++-.++..     ..
T Consensus        14 l~~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2          14 LAVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHT------CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhc------cccceeEeehHHHHHHHHHHHcCC
Confidence            36789999999999999999887743    57999999999999999873      23689999998776543     23


Q ss_pred             CCccEEEecccccCCh--------HHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          201 GEYDCIFLAALVGMSK--------EEKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~--------~~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                      +.+|.|+++-.+....        ....+.|+...+.++|||++++-+.|++
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            5699999875441111        2235588999999999999999887653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.7e-07  Score=76.13  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=75.3

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      +..+.+...+++++|+.+|+|++|+.++.+|+.  .|++++.+|.+++..+.+++    +|.   ...+...+-......
T Consensus        20 y~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~~~~~~~~a~~----lGa---d~~i~~~~~~~~~~~   90 (168)
T d1uufa2          20 YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKA----LGA---DEVVNSRNADEMAAH   90 (168)
T ss_dssp             HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HTC---SEEEETTCHHHHHTT
T ss_pred             HHHHHHhCCCCCCEEEEeccchHHHHHHHHhhc--ccccchhhccchhHHHHHhc----cCC---cEEEECchhhHHHHh
Confidence            556667778999999999999999999999993  68999999999998776665    562   222221221112223


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.||+||.+....       ..++...+.++|||++++-.
T Consensus        91 ~~~~D~vid~~g~~-------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNTVAAP-------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTCEEEEEECCSSC-------CCHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceeeeeeecc-------hhHHHHHHHHhcCCEEEEec
Confidence            35699998765431       13467778999999998864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.38  E-value=2.7e-06  Score=73.36  Aligned_cols=67  Identities=15%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      .....++++||+||+|+|-+|... ++   .+.+|++||+|+..++..++....    .++++++++|+.++...
T Consensus        16 ~~~~~~~d~VlEIGpG~G~LT~~L-l~---~~~~v~avE~D~~l~~~l~~~~~~----~~n~~i~~~D~l~~~~~   82 (235)
T d1qama_          16 NIRLNEHDNIFEIGSGKGHFTLEL-VQ---RCNFVTAIEIDHKLCKTTENKLVD----HDNFQVLNKDILQFKFP   82 (235)
T ss_dssp             TCCCCTTCEEEEECCTTSHHHHHH-HH---HSSEEEEECSCHHHHHHHHHHTTT----CCSEEEECCCGGGCCCC
T ss_pred             hcCCCCCCeEEEECCCchHHHHHH-Hh---CcCceEEEeeccchHHHHHHHhhc----ccchhhhhhhhhhcccc
Confidence            345689999999999998888665 45   468999999999999999885543    25899999999876543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.34  E-value=7.5e-07  Score=79.66  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=80.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHH---hhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMA---KNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA---~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ...++.+|+|.|||++++....+.   ++.....+++|+|+|+.++..|+.++...+.   ...+.++|..... ....|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~-~~~~f  189 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGLANL-LVDPV  189 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTTSCC-CCCCE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---hhhhhcccccccc-ccccc
Confidence            346778999999998766533322   2123456899999999999999999887773   6788888876433 33579


Q ss_pred             cEEEecccccC--ChHH---------------HHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          204 DCIFLAALVGM--SKEE---------------KVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       204 D~V~~aa~v~~--~~~~---------------k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      |+|+.+.-.+.  ..+.               ..-++++..+.|+|||++++-.+.+
T Consensus       190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            99998863321  1111               1337999999999999887766544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=1.6e-07  Score=76.00  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=73.2

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--  197 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--  197 (284)
                      +.++.+..++++++|+.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.   . .++..+-.+..  
T Consensus        17 ~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~----~Ga---~-~~i~~~~~~~~~~   86 (166)
T d1llua2          17 YKGLKQTNARPGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDDAKLELARK----LGA---S-LTVNARQEDPVEA   86 (166)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTC---S-EEEETTTSCHHHH
T ss_pred             HHHHHHhCCCCCCEEEEeeccccHHHHHHHHHH--cCCccceecchhhHHHhhhc----cCc---c-ccccccchhHHHH
Confidence            345556678999999999999999999999993  57999999999999988876    552   2 22222212211  


Q ss_pred             --ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        .....+|.++.++..    .   ..++...+.++|||++++-.
T Consensus        87 ~~~~~~g~~~~i~~~~~----~---~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          87 IQRDIGGAHGVLVTAVS----N---SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HHHHHSSEEEEEECCSC----H---HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHhhcCCccccccccc----c---hHHHHHHHHhcCCcEEEEEE
Confidence              111345655555442    1   35788889999999998854

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=7.2e-07  Score=73.20  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             HHHhc-CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccc-
Q 036061          122 ILDEN-GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQV-  196 (284)
Q Consensus       122 ~l~~~-~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~-  196 (284)
                      ++.+. ..+++++||.+|+|++|..++.+|++  .|+ +|+++|.+++..+.|++    +|.   ...+-.  .|..+. 
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~vi~~~~~~~~~~~   89 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEE----IGA---DLTLNRRETSVEERR   89 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccc--ccccccccccccccccccccc----ccc---eEEEeccccchHHHH
Confidence            44343 35789999999999999999999993  676 89999999999988876    452   222211  121111 


Q ss_pred             ---c--ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 ---K--EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ---~--~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         .  ..-..+|+||-+...       ...++...+.++|||++++-.
T Consensus        90 ~~i~~~~~~~g~Dvvid~vG~-------~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          90 KAIMDITHGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHhhCCCCceEEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence               1  112359999965432       135678889999999997754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.31  E-value=1.8e-07  Score=77.09  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .+|.+|+.||+|-.|+.|+..|+  ..|++|+.+|.+++.++.-+....      .++++...+-..+.....+.|+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~--~lGA~V~~~D~~~~~l~~l~~~~~------~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAV--GLGAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHh--hCCCEEEEEeCcHHHHHHHHHhhc------ccceeehhhhhhHHHhhccCcEEEE
Confidence            47899999999999999999998  589999999999999887666433      3567776666555555668999999


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++++.-.+.+|. +-+++.+.||||.+++=-..
T Consensus       102 aalipG~~aP~l-It~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         102 AVLVPGRRAPIL-VPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCTTSSCCCC-BCHHHHTTSCTTCEEEETTC
T ss_pred             eeecCCcccCee-ecHHHHhhcCCCcEEEEeec
Confidence            998844334443 66889999999999875543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.29  E-value=3.9e-07  Score=73.33  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccc-
Q 036061          120 YRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQV-  196 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~-  196 (284)
                      +.++.+.+.+++++||..|+|++|..++.+|+  ..|++|+++|.+++..+.+++    +|.   ..-+..  .|..+. 
T Consensus        17 ~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~--~~g~~v~~~~~~~~r~~~~k~----~Ga---~~~~~~~~~~~~~~~   87 (168)
T d1rjwa2          17 YKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK--AMGLNVVAVDIGDEKLELAKE----LGA---DLVVNPLKEDAAKFM   87 (168)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSTTHHHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TTC---SEEECTTTSCHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEeecccchhhhhHHHh--cCCCeEeccCCCHHHhhhhhh----cCc---ceecccccchhhhhc
Confidence            34556667899999999999999999999999  478899999999999887766    562   111111  111111 


Q ss_pred             cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .....++|.++.++..       ...++...+.++|||.+++-.
T Consensus        88 ~~~~~~~~~~v~~~~~-------~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          88 KEKVGGVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHHHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             ccccCCCceEEeecCC-------HHHHHHHHHHhccCCceEecc
Confidence            1111345555555442       246789999999999998854

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=9.9e-07  Score=81.24  Aligned_cols=105  Identities=20%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--------------CCeEEEEecccc
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE--------------KRMKFVTCDIMQ  195 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~--------------~~I~f~~~D~~~  195 (284)
                      ++.+|||..||++.. ++..|+ ..+...|+..|+|++|+++++++++..| ..              ..+.+.+.|+..
T Consensus        45 ~~~~vLD~~sasG~r-siRya~-E~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~~~~~~~~~~~~~~~~~~~~~~Da~~  121 (375)
T d2dula1          45 NPKIVLDALSATGIR-GIRFAL-ETPAEEVWLNDISEDAYELMKRNVMLNF-DGELRESKGRAILKGEKTIVINHDDANR  121 (375)
T ss_dssp             CCSEEEESSCTTSHH-HHHHHH-HSSCSEEEEEESCHHHHHHHHHHHHHHC-CSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred             CCCEEEEcCCCccHH-HHHHHH-hCCCCEEEEecCCHHHHHHHHHHHHhcC-ccccccccccccccccceeEeehhhhhh
Confidence            678999999998655 454554 2455689999999999999999999877 33              247788888876


Q ss_pred             ccccCC-CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          196 VKEKLG-EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       196 ~~~~~~-~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +....+ .||+|.++.+ |    -...+++...+.++.||+|.+...+
T Consensus       122 ~~~~~~~~fDvIDiDPf-G----s~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         122 LMAERHRYFHFIDLDPF-G----SPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HHHHSTTCEEEEEECCS-S----CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhHhhcCcCCcccCCCC-C----CcHHHHHHHHHHhccCCEEEEEecC
Confidence            555443 5999999986 2    2356899999999999999997744

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.22  E-value=3e-07  Score=77.12  Aligned_cols=111  Identities=16%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE---ecccccc
Q 036061          121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT---CDIMQVK  197 (284)
Q Consensus       121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~---~D~~~~~  197 (284)
                      ..+.+...+++++||.+||||+|+.++.+|+ .....+|+++|.+++.++.|++    +|.   . .++.   .|..+..
T Consensus        16 ~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak-~~ga~~Vi~~d~~~~rl~~a~~----~Ga---~-~~~~~~~~~~~~~i   86 (195)
T d1kola2          16 HGAVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDLNPARLAHAKA----QGF---E-IADLSLDTPLHEQI   86 (195)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHH----TTC---E-EEETTSSSCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECcCHHHHHHHHHHH-hhcccceeeecccchhhHhhhh----ccc---c-EEEeCCCcCHHHHH
Confidence            3455667899999999999999999999998 4555699999999999998887    352   1 2221   1111100


Q ss_pred             ---ccCCCccEEEeccccc---C-----ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          198 ---EKLGEYDCIFLAALVG---M-----SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~---~-----~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                         .....+|+||.+....   .     ......+.++...+.++|||++++-.
T Consensus        87 ~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          87 AALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence               1223699998654310   0     00123568999999999999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.16  E-value=6.3e-07  Score=73.26  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=72.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----  198 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----  198 (284)
                      ....++++++||.+|+|++|+.++.+|+. .....|+..|.+++..+.|++    +|. .   +++..+-.++..     
T Consensus        22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~-~g~~~v~~~~~~~~k~~~a~~----~Ga-~---~~i~~~~~~~~~~i~~~   92 (174)
T d1f8fa2          22 NALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDIVESRLELAKQ----LGA-T---HVINSKTQDPVAAIKEI   92 (174)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHH----HTC-S---EEEETTTSCHHHHHHHH
T ss_pred             HhhCCCCCCEEEEeCCCHHHhhhhhcccc-cccceeeeeccHHHHHHHHHH----cCC-e---EEEeCCCcCHHHHHHHH
Confidence            34457899999999999999999999983 334467888999999888876    452 1   233222222111     


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.||+||.+...       ...++...+.++|||++++-.
T Consensus        93 t~gg~D~vid~~G~-------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          93 TDGGVNFALESTGS-------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             TTSCEEEEEECSCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCcEEEEcCCc-------HHHHHHHHhcccCceEEEEEe
Confidence            12469999976553       246678889999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.13  E-value=5.9e-06  Score=67.69  Aligned_cols=102  Identities=19%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc--cccc--cc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI--MQVK--EK  199 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~--~~~~--~~  199 (284)
                      ...++++++|+.+|||++|+.++.+|+  ..|+ .|+.+|++++..+.|++    +|. ..-+.+...|-  ....  ..
T Consensus        23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak--~~Ga~~Vi~~d~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~~~~~~   95 (174)
T d1e3ia2          23 TAKVTPGSTCAVFGLGCVGLSAIIGCK--IAGASRIIAIDINGEKFPKAKA----LGA-TDCLNPRELDKPVQDVITELT   95 (174)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHH--HTTCSEEEEECSCGGGHHHHHH----TTC-SEEECGGGCSSCHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHH--HhCCceeeeeccchHHHHHHHH----hCC-CcccCCccchhhhhhhHhhhh
Confidence            456789999999999999999999999  3565 79999999999887777    452 11111111110  0001  01


Q ss_pred             CCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      -+.+|+||.+...       ...+++..+.++|| |++++-.
T Consensus        96 ~~G~d~vie~~G~-------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          96 AGGVDYSLDCAGT-------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             TSCBSEEEESSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cCCCcEEEEeccc-------chHHHHHHHHhhcCCeEEEecC
Confidence            2469999977654       34678889999996 8988865

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.11  E-value=1.5e-06  Score=70.81  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             HHHhcCCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          122 ILDENGVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      ++.+...+++++||..| +|++|..++.+|+  ..|++|++++.+++..+.+++    +|.   ..-+-..|..+.....
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak--~~G~~vi~~~~~~~~~~~~~~----lGa---~~~i~~~~~~~~~~~~   89 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVAR--AMGLRVLAAASRPEKLALPLA----LGA---EEAATYAEVPERAKAW   89 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHH--HTTCEEEEEESSGGGSHHHHH----TTC---SEEEEGGGHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhc--ccccccccccccccccccccc----ccc---ceeeehhhhhhhhhcc
Confidence            34455678999999999 5899999999999  478999999999988777665    663   2222222322222234


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ..+|+||-.  +|-       .+++..+.++|||++++-
T Consensus        90 ~g~D~v~d~--~G~-------~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          90 GGLDLVLEV--RGK-------EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             TSEEEEEEC--SCT-------THHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc--cch-------hHHHHHHHHhcCCcEEEE
Confidence            579999853  331       246778899999999874

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.09  E-value=2e-07  Score=81.25  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=58.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      ......++++|||||+|+|.+|.. |++   .+.+|++||+|+.+++.+++.   .+ ...+++++++|++++......+
T Consensus        23 ~~~~~~~~d~VLEIGpG~G~LT~~-L~~---~~~~v~aIE~D~~l~~~l~~~---~~-~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          23 KQLNLKETDTVYEIGTGKGHLTTK-LAK---ISKQVTSIELDSHLFNLSSEK---LK-LNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHCCCCSSEEEEECSCCCSSCSHH-HHH---HSSEEEESSSSCSSSSSSSCT---TT-TCSEEEECCSCCTTTTCCCSSE
T ss_pred             HhcCCCCCCeEEEECCCccHHHHH-HHh---hcCceeEeeecccchhhhhhh---hh-hccchhhhhhhhhcccccccee
Confidence            344678899999999999888865 566   478999999999998887763   33 2358999999998866544445


Q ss_pred             cEEE
Q 036061          204 DCIF  207 (284)
Q Consensus       204 D~V~  207 (284)
                      +.|+
T Consensus        95 ~~vv   98 (245)
T d1yuba_          95 YKIV   98 (245)
T ss_dssp             EEEE
T ss_pred             eeEe
Confidence            5554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-05  Score=70.70  Aligned_cols=78  Identities=14%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      .....++..|++||+|+|.+|-..+ +   .+.+|++|++|+..++.-++.+.... ...+++++.+|+....  +..++
T Consensus        16 ~~~~~~~d~VlEIGPG~G~LT~~Ll-~---~~~~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~i~~D~l~~~--~~~~~   88 (278)
T d1zq9a1          16 KAALRPTDVVLEVGPGTGNMTVKLL-E---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTD--LPFFD   88 (278)
T ss_dssp             HTCCCTTCEEEEECCTTSTTHHHHH-H---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSC--CCCCS
T ss_pred             HhCCCCCCEEEEECCCchHHHHHHH-h---cCCcEEEEEEccchhHHHHHHHhhhc-cccchhhhHHHHhhhh--hhhhh
Confidence            3456788999999999998887654 5   46799999999999999999887765 4679999999997643  44566


Q ss_pred             EEEec
Q 036061          205 CIFLA  209 (284)
Q Consensus       205 ~V~~a  209 (284)
                      .|+.+
T Consensus        89 ~vV~N   93 (278)
T d1zq9a1          89 TCVAN   93 (278)
T ss_dssp             EEEEE
T ss_pred             hhhcc
Confidence            66643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.01  E-value=6.1e-06  Score=66.52  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             HHHHHhcCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          120 YRILDENGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      +.++.+..++++++|+.+|+ |++|..++.+++. ....+|+++|.+++..+.+++    +|.   . .++..+-.+...
T Consensus        17 ~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~-~g~~~V~~~~~~~~~~~~~~~----~Ga---~-~~i~~~~~~~~~   87 (170)
T d1jvba2          17 YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKR----AGA---D-YVINASMQDPLA   87 (170)
T ss_dssp             HHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHH----HTC---S-EEEETTTSCHHH
T ss_pred             HHHHHHhCCCCCCEEEEEeccccceeeeeecccc-cccccccccccchhhHHHHHH----cCC---c-eeeccCCcCHHH
Confidence            44566777899999999995 8999988988883 444799999999999888876    452   2 222222222111


Q ss_pred             ------cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 ------KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ------~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                            ..+.||+||-++..       ...++...+.++|||++++-.
T Consensus        88 ~~~~~~~~~~~d~vid~~g~-------~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          88 EIRRITESKGVDAVIDLNNS-------EKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HHHHHTTTSCEEEEEESCCC-------HHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHHHhhcccchhhhccccc-------chHHHhhhhhcccCCEEEEec
Confidence                  12359999876543       346678889999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.00  E-value=8.2e-07  Score=73.93  Aligned_cols=110  Identities=22%  Similarity=0.215  Sum_probs=74.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC--C--CCeEEEEecccc---------
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF--E--KRMKFVTCDIMQ---------  195 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l--~--~~I~f~~~D~~~---------  195 (284)
                      .+|.+|+.||+|..|+.|+..|+  ..|++|+.+|++++..+..+++..+.-.+  +  ...+-..+.+.+         
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~--~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAK--RLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            57899999999999999999998  58999999999999988887754332100  0  000000111111         


Q ss_pred             ---ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          196 ---VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       196 ---~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         +...+.+.|+|+.++++.-.+.+|. +-+++.+.||||.+++=-..
T Consensus       105 ~~~l~~~l~~aDlVI~talipG~~aP~l-it~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPGKPAPVL-ITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCC-SCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHHHhhhhheeeeecCCccccee-ehHHHHHhcCCCcEEEEEee
Confidence               1122457899999999844334442 66889999999999875443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.98  E-value=1.4e-05  Score=65.37  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----c--c
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----K--E  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~--~  198 (284)
                      +...++++.|+-+|+|++|+.++.+|+ +....+|+++|++++.++.|+++    |   ....|-..|..+.    .  .
T Consensus        24 ~~~~~~g~tVlI~G~GgvGl~ai~~ak-~~G~~~Vi~vd~~~~kl~~Ak~~----G---A~~~in~~~~~~~~~~~~~~~   95 (176)
T d1d1ta2          24 TGKVKPGSTCVVFGLGGVGLSVIMGCK-SAGASRIIGIDLNKDKFEKAMAV----G---ATECISPKDSTKPISEVLSEM   95 (176)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHH----T---CSEEECGGGCSSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHH-HcCCceEEEecCcHHHHHHHHhc----C---CcEEECccccchHHHHHHHHh
Confidence            445789999999999999999999999 33346899999999999998883    4   2222221221110    0  1


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~  240 (284)
                      .-..+|+|+.+..-       ...++.....+ +++|++++-.
T Consensus        96 ~g~G~d~vi~~~g~-------~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          96 TGNNVGYTFEVIGH-------LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HTSCCCEEEECSCC-------HHHHHHHHTTSCTTTCEEEECS
T ss_pred             ccccceEEEEeCCc-------hHHHHHHHHHhhcCCeEEEEEE
Confidence            22469999876542       12334444444 5558888865

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.97  E-value=1.7e-05  Score=64.61  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=68.3

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc--cccc--ccC
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI--MQVK--EKL  200 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~--~~~~--~~~  200 (284)
                      +..++++++||.+|+|++|+.++.+|+. ....+|+++|++++.++.|++    +|. ..-|.+...|.  .+..  ...
T Consensus        22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~-~G~~~Vi~~d~~~~kl~~a~~----lGa-~~~i~~~~~d~~~~~~~~~~~~   95 (174)
T d1p0fa2          22 TAKVTPGSTCAVFGLGGVGFSAIVGCKA-AGASRIIGVGTHKDKFPKAIE----LGA-TECLNPKDYDKPIYEVICEKTN   95 (174)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHH----TTC-SEEECGGGCSSCHHHHHHHHTT
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHH-cCCceeeccCChHHHHHHHHH----cCC-cEEEcCCCchhHHHHHHHHhcC
Confidence            4467999999999999999999999993 334689999999999998876    552 11111112221  1111  112


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCC-CcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKD-GGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~p-Gg~lv~r~  240 (284)
                      +.+|+||.+...       ...+++....+++ +|.+++-.
T Consensus        96 ~G~d~vid~~g~-------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          96 GGVDYAVECAGR-------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEcCCC-------chHHHHHHHHHHHhcCceEEEE
Confidence            469999976543       2345556666655 58887755

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.96  E-value=3.5e-06  Score=68.36  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc---ccccc--cCCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI---MQVKE--KLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~---~~~~~--~~~~  202 (284)
                      ..++++||.+|+|++|..++.+|+ +.....|+++|.+++..+.+++    +|.   . .++..+-   .+...  ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~-~~g~~~vv~~~~~~~k~~~~~~----~ga---~-~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLK-VMTPATVIALDVKEEKLKLAER----LGA---D-HVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHH-HHCCCEEEEEESSHHHHHHHHH----TTC---S-EEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHH-hhcCcccccccchhHHHHHHhh----ccc---c-eeecCcccHHHHHHHhhCCCC
Confidence            478899999999999999999998 3445689999999998888876    442   1 2332221   11111  1235


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+||.+...       ...++...+.+++||++++-.
T Consensus       101 ~d~vid~~g~-------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGS-------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCC-------HHHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCc-------chHHHHHHHHHhCCCEEEEEe
Confidence            9999976553       236788899999999999754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.4e-05  Score=65.02  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC-------------CCeEEEE
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE-------------KRMKFVT  190 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~-------------~~I~f~~  190 (284)
                      ++|..||+|.+|-. |..+|.   .|..|+.+|+|+++++.+++.+++.       |...             .++++. 
T Consensus         5 kkvaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             EEEEEECcCHHHHHHHHHHHh---CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-
Confidence            69999999988876 344444   8999999999999999998877532       3111             133442 


Q ss_pred             eccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          191 CDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       191 ~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .|.   ....++.|+|+-+.  ..+.+.|.++++++.+.++++..|...+
T Consensus        81 ~d~---~~a~~~ad~ViEav--~E~l~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          81 TDA---ASVVHSTDLVVEAI--VENLKVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             SCH---HHHTTSCSEEEECC--CSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             chh---Hhhhcccceehhhc--ccchhHHHHHHHHHhhhcccCceeeccC
Confidence            222   22356789998664  3456889999999999999999887766

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.7e-06  Score=67.10  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCC
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~  202 (284)
                      .++++++||..|+ |++|..++.+|+  ..|++|++++.+++..+.+++    +|. ..-+.....|..+..   .....
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~--~~G~~vi~~~~~~~~~~~~~~----~Ga-~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIAR--AYGLKILGTAGTEEGQKIVLQ----NGA-HEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----TTC-SEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEEecccccccccccccc--ccCcccccccccccccccccc----cCc-ccccccccccHHHHhhhhhccCC
Confidence            5689999999995 999999999999  478999999999887776654    673 211111111221111   12246


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||+|+.+..     .   ..++...+.|+|||+++.-
T Consensus        98 ~d~v~d~~g-----~---~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          98 IDIIIEMLA-----N---VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEEESCH-----H---HHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeeccc-----H---HHHHHHHhccCCCCEEEEE
Confidence            999985432     1   3678889999999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=8.4e-05  Score=61.34  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++.+|||.|||++++.... .+++.....++|+|+|+.++.           +..+..++++|...... ...||+|
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~-~~~~~~~~~i~g~ei~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~fd~i   82 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAF-REAHGTAYRFVGVEIDPKALD-----------LPPWAEGILADFLLWEP-GEAFDLI   82 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHH-HHHHCSCSEEEEEESCTTTCC-----------CCTTEEEEESCGGGCCC-SSCEEEE
T ss_pred             CCCCcCEEEECCCchHHHHHHH-HHhccccceEEeeecCHHHHh-----------hcccceeeeeehhcccc-cccccee
Confidence            4578899999999998775443 333566788999999987632           33466888899876443 3579999


Q ss_pred             EecccccC---C--------hH-----------------HHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          207 FLAALVGM---S--------KE-----------------EKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       207 ~~aa~v~~---~--------~~-----------------~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      +.+..-+.   .        ..                 -...++++..+.|+|||.+++-...
T Consensus        83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            86642111   0        00                 1246678999999999998876643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.81  E-value=4.5e-05  Score=60.96  Aligned_cols=89  Identities=10%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||.+||+|.+|.+- ..|++   .|.+|+++|++++.++.|++    .| ..+   -. .+-   .......|+||++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~----~~-~~~---~~-~~~---~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVE----RQ-LVD---EA-GQD---LSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-SCS---EE-ESC---GGGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHH----hh-ccc---ee-eee---cccccccccccccC
Confidence            589999999887542 23333   78999999999998887765    44 211   11 121   22345789999865


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      -    .....++++++...++++.+++--
T Consensus        66 p----~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 P----IQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             C----HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             c----Hhhhhhhhhhhhhhcccccceeec
Confidence            4    377889999999999999987644

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.4e-05  Score=61.86  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--------c
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------K  199 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------~  199 (284)
                      ..++.+|+|+||+|+|.+-... +.......|+++|+.|-           ..  -..+.|+++|..+...        .
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~-~~~~~~~~v~~vDl~~~-----------~~--i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVV-TQIGGKGRIIACDLLPM-----------DP--IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHH-HHHCTTCEEEEEESSCC-----------CC--CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEeccCCcceEEEE-eeccccceEEEeecccc-----------cc--cCCceEeecccccchhhhhhhhhcc
Confidence            3788999999999999976544 33466789999998762           12  2678999999876321        2


Q ss_pred             CCCccEEEecccc---cCChHHH-------HHHHHHHHhhcCCCcEEEEEecCcc--ccccCccCCCccC-CCcEEEEEe
Q 036061          200 LGEYDCIFLAALV---GMSKEEK-------VKIIKHIRKYMKDGGVLLVRSAKGA--RAFLYPVVEKHDL-LDFELLSVF  266 (284)
Q Consensus       200 ~~~fD~V~~aa~v---~~~~~~k-------~~il~~l~~~l~pGg~lv~r~~~gl--r~~lYp~v~~~dl-~gfe~~~~~  266 (284)
                      .+.||+|+.+...   |....+-       ...+.-..+.|++||.+++-..+|-  ..++|      .+ .-|+.+.++
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~------~l~~~F~~V~~~  159 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR------EIRSLFTKVKVR  159 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH------HHHHHEEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHH------HHHhhcCEEEEE
Confidence            2469999977542   2211221       4566777899999999999886542  11221      12 348888888


Q ss_pred             cCCc
Q 036061          267 HPTN  270 (284)
Q Consensus       267 hP~~  270 (284)
                      .|..
T Consensus       160 KP~a  163 (180)
T d1ej0a_         160 KPDS  163 (180)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            8865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.4e-05  Score=69.55  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=52.1

Q ss_pred             cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061          126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ....+++.|++||+|+|.+|.. |++   .+.+|++||+|+..++..++..   . ..++++++.+|+.++..
T Consensus        17 ~~~~~~d~vlEIGpG~G~LT~~-Ll~---~~~~v~aiEiD~~l~~~L~~~~---~-~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          17 INPQKGQAMVEIGPGLAALTEP-VGE---RLDQLTVIELDRDLAARLQTHP---F-LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHHH-HHT---TCSCEEEECCCHHHHHHHHTCT---T-TGGGEEEECSCGGGCCH
T ss_pred             cCCCCCCEEEEECCCchHHHHH-HHc---cCCceEEEEeccchhHHHHHHh---h-hccchhHHhhhhhhhcc
Confidence            3567899999999999888876 556   5789999999999998887732   2 23589999999986543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.76  E-value=0.0001  Score=58.91  Aligned_cols=94  Identities=15%  Similarity=0.080  Sum_probs=63.3

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      ++|+.||+|-+|.+-..-.+...+..+|+++|.|++..+.|++.    |. -+  .+. .+...  ......|+|+++.-
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~-~~--~~~-~~~~~--~~~~~~dlIila~p   71 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI-ID--EGT-TSIAK--VEDFSPDFVMLSSP   71 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS-CS--EEE-SCGGG--GGGTCCSEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc-ch--hhh-hhhhh--hhccccccccccCC
Confidence            36999999988876332222234557899999999999888873    41 11  121 22211  11236899998765


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          212 VGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       212 v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      +    ..-.++++.+.++++++.+++-.
T Consensus        72 ~----~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          72 V----RTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             H----HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             c----hhhhhhhhhhhcccccccccccc
Confidence            4    67788999999999998776543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.75  E-value=1.9e-05  Score=68.53  Aligned_cols=77  Identities=8%  Similarity=0.211  Sum_probs=62.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------CCCCeEEEEeccccccccCC-Cc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-------FEKRMKFVTCDIMQVKEKLG-EY  203 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-------l~~~I~f~~~D~~~~~~~~~-~f  203 (284)
                      .+|||.=+| +|-.++.+|.   .|++||++|.+|......+..+++...       ...+|+++++|..++..... .|
T Consensus        90 ~~VlD~TaG-lG~Da~vlA~---~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          90 PDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             CCEEETTCT-TCHHHHHHHH---HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CEEEECCCc-ccHHHHHHHh---CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            489999999 6889999998   689999999999988777776655421       12489999999988776553 69


Q ss_pred             cEEEecccc
Q 036061          204 DCIFLAALV  212 (284)
Q Consensus       204 D~V~~aa~v  212 (284)
                      |+||++..-
T Consensus       166 DvIYlDPMF  174 (250)
T d2oyra1         166 QVVYLDPMF  174 (250)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.56  E-value=0.00012  Score=58.61  Aligned_cols=101  Identities=18%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc----cc--c
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ----VK--E  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~----~~--~  198 (284)
                      +..++++++||..|+|++|..++.+|+. .....|+++|.+++..+.|++    +|.   .-.+...+..+    ..  .
T Consensus        23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~----lGa---~~~i~~~~~~~~~~~~~~~~   94 (176)
T d2fzwa2          23 TAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKE----FGA---TECINPQDFSKPIQEVLIEM   94 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHH----HTC---SEEECGGGCSSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEecchhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHH----hCC---cEEEeCCchhhHHHHHHHHH
Confidence            3467999999999999999999999993 334689999999999888776    452   21111111111    11  1


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+.+|+||....-       ...++.....+++||.+++-.
T Consensus        95 ~~~g~D~vid~~G~-------~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          95 TDGGVDYSFECIGN-------VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             TTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCCCcEeeecCCC-------HHHHHHHHHhhcCCceeEEEE
Confidence            12469999965432       246678888999998776543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.54  E-value=0.00022  Score=57.38  Aligned_cols=101  Identities=16%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------c
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------E  198 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~  198 (284)
                      ...++++++||.+|+|++|.+++.+++ ...+.+|+++|++++..+.+++    +|.   .-.+...+..+..      .
T Consensus        23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~-~~g~~~Vi~~~~~~~k~~~a~~----~Ga---~~~i~~~~~~~~~~~~~~~~   94 (176)
T d2jhfa2          23 VAKVTQGSTCAVFGLGGVGLSVIMGCK-AAGAARIIGVDINKDKFAKAKE----VGA---TECVNPQDYKKPIQEVLTEM   94 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHH----TTC---SEEECGGGCSSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCcHHHHHHHHH-HcCCceEEeecCcHHHHHHHHH----hCC---eeEEecCCchhHHHHHHHHH
Confidence            345799999999999999999999998 4556799999999999988877    342   2122111211111      1


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~  240 (284)
                      ..+.+|+||.+...       ...++.....+++| |.+++-.
T Consensus        95 ~~~G~D~vid~~G~-------~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          95 SNGGVDFSFEVIGR-------LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             TTSCBSEEEECSCC-------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             hcCCCCEEEecCCc-------hhHHHHHHHHHhcCCcceEEec
Confidence            22469999976553       23456666677776 5555544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.47  E-value=0.00028  Score=56.50  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-c----c--
Q 036061          125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-V----K--  197 (284)
Q Consensus       125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~----~--  197 (284)
                      ...++++++|+.+|+|++|..++.+++ ...+..|+++|.+++..+.|++    +|.   . .++..+-.+ .    .  
T Consensus        23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~-~~g~~~Vi~~~~~~~rl~~a~~----~GA---d-~~in~~~~~~~~~~~~~~   93 (175)
T d1cdoa2          23 TAKVEPGSTCAVFGLGAVGLAAVMGCH-SAGAKRIIAVDLNPDKFEKAKV----FGA---T-DFVNPNDHSEPISQVLSK   93 (175)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHH----TTC---C-EEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEEecCCccchHHHHHH-HHhhchheeecchHHHHHHHHH----cCC---c-EEEcCCCcchhHHHHHHh
Confidence            346789999999999999999998888 5667789999999999888776    552   2 232211111 0    0  


Q ss_pred             ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEE
Q 036061          198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVR  239 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r  239 (284)
                      ...+.+|+|+.+...       ...++.....+++| +++++-
T Consensus        94 ~~~~G~d~vid~~G~-------~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          94 MTNGGVDFSLECVGN-------VGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             HHTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             hccCCcceeeeecCC-------HHHHHHHHHHhhCCCcceeEE
Confidence            112469999876542       23445666666666 444443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.47  E-value=0.00011  Score=58.80  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCeE----EEEeccccccccCCCcc
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS--DIEFEKRMK----FVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~G~l~~~I~----f~~~D~~~~~~~~~~fD  204 (284)
                      ++|..||+|.+|.... .|++   .|.+|+.+|++++.++..++.-..  .+ ......    ....|.   .....++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~e~~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLTSDI---GLAVKDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEESCH---HHHHTTCS
T ss_pred             CEEEEECccHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhhhhh---HhHhcCCC
Confidence            6899999998776533 3444   789999999999988877653211  11 001111    122222   22345799


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +|+++.-    ......+++++.++++++..+++..+
T Consensus        75 ~iii~v~----~~~~~~~~~~i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          75 VILIVVP----AIHHASIAANIASYISEGQLIILNPG  107 (184)
T ss_dssp             EEEECSC----GGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             EEEEEEc----hhHHHHHHHHhhhccCCCCEEEEeCC
Confidence            9998643    35678899999999999998876543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.36  E-value=8.8e-05  Score=61.03  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             CCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccc
Q 036061          131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIM  194 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~  194 (284)
                      =++|..||+|.+|-.-. ++|.   .|.+|+.+|+|+++++.+.+.+...       |.+.        +++.+ ..+  
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~--   77 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS--   77 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS--
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccc--
Confidence            36899999998876432 4444   7999999999999999888776532       1000        11222 111  


Q ss_pred             cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ..++.+.|+|+.+.  ..+.+.|.+++.++.+.++|+..|...+
T Consensus        78 --~~~~~~adlViEav--~E~l~~K~~lf~~l~~~~~~~~IiaSnT  119 (186)
T d1wdka3          78 --YGDFGNVDLVVEAV--VENPKVKQAVLAEVENHVREDAILASNT  119 (186)
T ss_dssp             --STTGGGCSEEEECC--CSCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             --cccccccceeeeee--cchHHHHHHHHHHHHhhcCCCeeEEecc
Confidence              12345689998643  3466899999999999999999987765

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.35  E-value=0.00031  Score=64.63  Aligned_cols=115  Identities=13%  Similarity=0.053  Sum_probs=80.2

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCC-----------CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLK-----------STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~-----------g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      .+.++.+|+|-.||++++-.-.+-.....           ...+.|+|+++.+...|+-+..-.|.-.....+.++|..+
T Consensus       159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~  238 (425)
T d2okca1         159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE  238 (425)
T ss_dssp             CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence            45678999999999988754332210001           2359999999999999999887766433456788888865


Q ss_pred             ccccCCCccEEEecccccCChH----------------HHHHHHHHHHhhcCCCcEEEEEecC
Q 036061          196 VKEKLGEYDCIFLAALVGMSKE----------------EKVKIIKHIRKYMKDGGVLLVRSAK  242 (284)
Q Consensus       196 ~~~~~~~fD~V~~aa~v~~~~~----------------~k~~il~~l~~~l~pGg~lv~r~~~  242 (284)
                      .. ....||+|+.+.--+....                ....++.++.+.|++||++++--++
T Consensus       239 ~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         239 KE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             SC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             hh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            33 2347999998764322111                1245999999999999987776543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=7.8e-05  Score=60.18  Aligned_cols=98  Identities=11%  Similarity=0.053  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCC
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~  202 (284)
                      .++++++||..| +|++|..++.+|+  ..|++|.+++.+++-.+.++    +.|. ..-+.....|..+...   ....
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~--~~g~~vi~~~~~~~~~~~l~----~~Ga-~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAK--MIGARIYTTAGSDAKREMLS----RLGV-EYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHH----TTCC-SEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCCCcccccchhhc--cccccceeeecccccccccc----cccc-cccccCCccCHHHHHHHHhCCCC
Confidence            468889999988 5999999999999  47899999999887666555    5673 2111111112211111   1236


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ||+||-...        .+.++...+.|+++|+++.-
T Consensus        95 ~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          95 VDVVLNSLA--------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence            999985433        13667888999999999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=8.1e-05  Score=59.95  Aligned_cols=99  Identities=7%  Similarity=0.019  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCC
Q 036061          127 GVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGE  202 (284)
Q Consensus       127 ~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~  202 (284)
                      .++++++||..|+| .+|..++.+|+  ..|++|+++|.|++..+.+++    +|. ..-|.....|..+...   .-..
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak--~~Ga~Vi~~~~s~~k~~~~~~----lGa-~~vi~~~~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAK--ALGAKLIGTVGTAQKAQSALK----AGA-WQVINYREEDLVERLKEITGGKK   97 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHH----HTC-SEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEEccccccchHHHHHHH--HhCCeEeecccchHHHHHHHh----cCC-eEEEECCCCCHHHHHHHHhCCCC
Confidence            46889999999655 48999999999  488999999999999888775    462 1111111222211111   1236


Q ss_pred             ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +|+|+-...     .   +.+....+.++|+|++++-.
T Consensus        98 ~d~v~d~~g-----~---~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          98 VRVVYDSVG-----R---DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEEECSC-----G---GGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEeCcc-----H---HHHHHHHHHHhcCCeeeecc
Confidence            999885443     1   24578888999999987744

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.09  E-value=0.0013  Score=53.07  Aligned_cols=96  Identities=18%  Similarity=0.120  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc--c-cc--ccC
Q 036061          127 GVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM--Q-VK--EKL  200 (284)
Q Consensus       127 ~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~--~-~~--~~~  200 (284)
                      ..+++++||..|+| .+|..++.+|+  ..|++|++++.+++..+.+++    .|.   ...+...|-.  + ..  ...
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak--~~Ga~vi~~~~~~~~~~~~~~----~Ga---~~vi~~~~~~~~~~~~~~~~~   96 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAK--LKGCKVVGAAGSDEKIAYLKQ----IGF---DAAFNYKTVNSLEEALKKASP   96 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCSCHHHHHHHHCT
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHH--ccCCEEEEeCCCHHHHHHHHh----hhh---hhhcccccccHHHHHHHHhhc
Confidence            46889999998885 48899999999  578999999999988766665    452   2223222211  1 11  122


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ..+|+||-...        .+.++...+.|+|||++++-
T Consensus        97 ~Gvd~v~D~vG--------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          97 DGYDCYFDNVG--------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             TCEEEEEESSC--------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCceeEEecC--------chhhhhhhhhccCCCeEEee
Confidence            46999985432        23678999999999999874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.08  E-value=0.00028  Score=57.67  Aligned_cols=102  Identities=11%  Similarity=-0.019  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEe--ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------
Q 036061          127 GVVNPKKVAFV--GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------  198 (284)
Q Consensus       127 ~~~~~~~VL~I--GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------  198 (284)
                      ..+++.+|+.+  |+|.+|..++.+|++  .|++|+++-.+++..+...+.++++|. ..-|..-..|..++..      
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~--~Ga~vI~~v~~~~~~~~~~~~~~~lGa-d~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELGA-TQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHTC-SEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhh--cCCeEEEEEecccccchHHhhhhhccc-cEEEeccccchhHHHHHHHHHH
Confidence            45778889998  667788999999994  689999987777777777777788883 2222221122221111      


Q ss_pred             --cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          199 --KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       199 --~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                        .-+.+|+||-+..     .   ..+....+.|+|||+++.-
T Consensus       102 ~~~g~~vdvv~D~vg-----~---~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         102 KQSGGEAKLALNCVG-----G---KSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHTCCEEEEEESSC-----H---HHHHHHHHTSCTTCEEEEC
T ss_pred             hhccCCceEEEECCC-----c---chhhhhhhhhcCCcEEEEE
Confidence              1245899984322     1   2457788999999998864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.05  E-value=0.0036  Score=47.66  Aligned_cols=94  Identities=17%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V~  207 (284)
                      ++|+-+|+|.+|......-.  ..|..|+.||.|++.++.+++   +.|     +.++.||+.+...    .....|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~--~~g~~v~vid~d~~~~~~~~~---~~~-----~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EID-----ALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HCS-----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCCcceecCChhhhhhhhh---hhh-----hhhccCcccchhhhhhcChhhhhhhc
Confidence            58999999987766432211  368999999999998887654   334     4788999986332    345788877


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ....    ..+..-+...+.+.+.+..++ .+.
T Consensus        71 ~~t~----~d~~N~~~~~~~k~~~~~~iI-~~~   98 (132)
T d1lssa_          71 AVTG----KEEVNLMSSLLAKSYGINKTI-ARI   98 (132)
T ss_dssp             ECCS----CHHHHHHHHHHHHHTTCCCEE-EEC
T ss_pred             ccCC----cHHHHHHHHHHHHHcCCceEE-EEe
Confidence            5322    244445666777888888544 443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.74  E-value=0.0036  Score=51.29  Aligned_cols=102  Identities=12%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEeccccccc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVAR------------QIVSSDIEFEKRMKFVTCDIMQVKE  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~G~l~~~I~f~~~D~~~~~~  198 (284)
                      ++|..||.|-+|++ |..||+   .|.+|+|+|+|++-++.-.            +.+.+.. ...+..+ ..|..+.  
T Consensus         1 MkI~ViGlG~vGl~~a~~la~---~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~-~~~~~~~-~~~~~~~--   73 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKKA--   73 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHHH--
T ss_pred             CEEEEECCCHhHHHHHHHHHh---CCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh-ccccccc-CCCHHHH--
Confidence            58999999988865 666777   7899999999998776532            2222211 1123333 2333221  


Q ss_pred             cCCCccEEEecccccC------ChHHHHHHHHH---HHhhcCCCcEEEEEec
Q 036061          199 KLGEYDCIFLAALVGM------SKEEKVKIIKH---IRKYMKDGGVLLVRSA  241 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~---l~~~l~pGg~lv~r~~  241 (284)
                       ....|++|++.....      +...-..+++.   +.+..+++..+++++.
T Consensus        74 -i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          74 -VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             -HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             -HhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence             235688887653211      11222344444   4455668999999883

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0032  Score=51.27  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-------------------AANDVARQIVSSDIEFEKRMKF  188 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-------------------~ai~~Ar~~~~~~G~l~~~I~f  188 (284)
                      ...+++|+.||+||.|++|...+.  ..|.+||-+|.++                   +.+++-.+.+++.|     |+|
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la--~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g-----V~i  112 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG-----VTL  112 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT-----CEE
T ss_pred             CCCCcEEEEECccHHHHHHHHHHH--hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC-----eEE
Confidence            467899999999999999888776  5899999999876                   33455555566666     455


Q ss_pred             EEeccccccccCCCccEEEecccc
Q 036061          189 VTCDIMQVKEKLGEYDCIFLAALV  212 (284)
Q Consensus       189 ~~~D~~~~~~~~~~fD~V~~aa~v  212 (284)
                      ..+.--+ .....+||.|+++...
T Consensus       113 ~l~~~Vt-~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         113 KLNHTVT-ADQLQAFDETILASGI  135 (179)
T ss_dssp             EESCCCC-SSSSCCSSEEEECCCE
T ss_pred             EeCCEEc-ccccccceeEEEeecC
Confidence            5433221 1223579999988754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.02  Score=44.65  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..+.||..||+|-+|.+..+.........++.-+|++++. -..|..+-+........+.+..+|..    ++.+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~----~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD----DCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG----GTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH----HhccceeEE
Confidence            4678999999997776654443322345689999999874 44555555544323456677666653    356789998


Q ss_pred             ecccc----cCCh--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSK--------EEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~--------~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +++..    +++.        +...++.+.+.++ .|+|.+++-+
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvt  123 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT  123 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEec
Confidence            87654    2221        1225667777776 6888888755

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.65  E-value=0.017  Score=45.10  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      |.||..||+|..|.+..+.........++.-+|++++.. ..+..+-+... .....++..++-.+   +..+-|+|++.
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~i~~~~~~~---~~~daDvVVit   76 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDPE---ICRDADMVVIT   76 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCGG---GGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-cCCCceeecCCCHH---HhhCCcEEEEe
Confidence            679999999988887654433234456899999998754 33444444433 23345665444322   34567999988


Q ss_pred             ccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..    +++..+        -.++...+.+. .|+|++++-+
T Consensus        77 aG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvt  118 (143)
T d1llda1          77 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLIT  118 (143)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             cccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence            764    333322        24556666666 7888887755

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.61  E-value=0.011  Score=46.34  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..+||..||+|..|.+..+.........+++.+|++++.. ..|..+-+... ......+..+|..    +....|+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~----~~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYS----DCKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGG----GGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc-ccCCceEeeccHH----HhccccEEEE
Confidence            4579999999988877544333123346899999998743 34444444333 2344566777754    3457899998


Q ss_pred             cccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          209 AALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       209 aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+..    +++..+        -.++.+.+.+. .|.+.+++-+
T Consensus        79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt  121 (146)
T d1ez4a1          79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA  121 (146)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence            7654    222111        24566666665 7888887765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.017  Score=44.77  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=65.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .||..||+|..|.+............++.-+|++++..+ .+..+..... ...+..+..+|..    ++.+.|+|++.+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~~~~~~~~~~~----~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDYA----DLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCGG----GGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccccccccCCcHH----HhcCCCEEEEec
Confidence            489999999877775443322344568999999986544 4444444444 3456677666643    345689999887


Q ss_pred             cc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..    +++..+        -.++.+.+.++ .|++++++-+
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt  116 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT  116 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence            54    343323        14445555555 6888877754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0023  Score=51.90  Aligned_cols=98  Identities=10%  Similarity=0.041  Sum_probs=61.5

Q ss_pred             CCCC--CEEEEec-cCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCC
Q 036061          128 VVNP--KKVAFVG-SGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLG  201 (284)
Q Consensus       128 ~~~~--~~VL~IG-sG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~  201 (284)
                      ++++  ++||.-| +|+.|..++.+|+  ..|+ .|++++.+++......   ..+|. ..-+.+...|..+...  ...
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak--~~Ga~~vi~~~~~~e~~~~l~---~~~ga-d~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGH--LLGCSRVVGICGTQEKCLFLT---SELGF-DAAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHH--HTTCSEEEEEESSHHHHHHHH---HHSCC-SEEEETTSSCHHHHHHHHCTT
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHH--HcCCcceecccchHHHHhhhh---hcccc-eEEeeccchhHHHHHHHHhcc
Confidence            4444  7899998 6999999999999  3565 5777777766544432   35562 2112222222221111  124


Q ss_pred             CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .+|+||-...        .+.++...+.|+|||+++.-
T Consensus       100 GvDvv~D~vG--------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         100 GVDVYFDNVG--------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             CEEEEEESSC--------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CceEEEecCC--------chhHHHHhhhccccccEEEe
Confidence            6999984432        24678999999999999863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.0029  Score=48.06  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V~  207 (284)
                      ++++.+|+|.+|........  ..|..|+.+|.|+++++.++    ..|     ...+.||+++...    ...+.|.|+
T Consensus         1 k~~iIiG~G~~G~~la~~L~--~~g~~vvvid~d~~~~~~~~----~~~-----~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELH--RMGHEVLAVDINEEKVNAYA----SYA-----THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHH--HTTCCCEEEESCHHHHHHTT----TTC-----SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCeEEEecCcHHHHHHHH----HhC-----CcceeeecccchhhhccCCccccEEE
Confidence            46888999987765432222  37899999999999988764    233     3667799876322    234678877


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ++..-    .+...++-.+.+.+.+...++.|..
T Consensus        70 ~~~~~----~~~~~~~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          70 VAIGA----NIQASTLTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             ECCCS----CHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EEcCc----hHHhHHHHHHHHHHcCCCcEEeecc
Confidence            65331    2344455555556677778888863

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.0042  Score=50.02  Aligned_cols=77  Identities=21%  Similarity=0.312  Sum_probs=48.9

Q ss_pred             CCCEEEEeccCCChhHHHH---HHh-hcCCCcEEEEEeCChHHHHHHH----HHHHhcCCCCCCeEEEE-eccccccccC
Q 036061          130 NPKKVAFVGSGPMPLTSIV---MAK-NHLKSTHFDNFDIDEAANDVAR----QIVSSDIEFEKRMKFVT-CDIMQVKEKL  200 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~---LA~-~~~~g~~V~~iDid~~ai~~Ar----~~~~~~G~l~~~I~f~~-~D~~~~~~~~  200 (284)
                      |..||..||+|..|.|...   +++ ..+.+.+++-+|+|++.++...    +.+...+   ...++.. .|.   ...+
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~---~~~~i~~~td~---~eaL   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG---ADLKFEKTMNL---DDVI   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTT---CCCEEEEESCH---HHHH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcC---CCeEEEEeCCh---hhcc
Confidence            4679999999988877433   222 1233569999999999776433    3334444   3455533 333   2344


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      .+.|+|+....+
T Consensus        75 ~dad~Vv~~~~~   86 (171)
T d1obba1          75 IDADFVINTAMV   86 (171)
T ss_dssp             TTCSEEEECCCT
T ss_pred             cCCCeEeeeccc
Confidence            678999977655

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.37  E-value=0.0052  Score=52.73  Aligned_cols=111  Identities=8%  Similarity=0.038  Sum_probs=64.8

Q ss_pred             HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      .++...+..+|+|+||||+|.|-. +|+ ..+...|.|+|+=-+--+ .-......+  .+-+++...+-.... ....+
T Consensus        60 ~~~~~~~~~~vvDlG~~pGgws~~-~a~-~~~v~~V~g~~iG~d~~e-~P~~~~~~~--~ni~~~~~~~dv~~l-~~~~~  133 (257)
T d2p41a1          60 ERNLVTPEGKVVDLGCGRGGWSYY-CGG-LKNVREVKGLTKGGPGHE-EPIPMSTYG--WNLVRLQSGVDVFFI-PPERC  133 (257)
T ss_dssp             HTTSSCCCEEEEEETCTTSHHHHH-HHT-STTEEEEEEECCCSTTSC-CCCCCCSTT--GGGEEEECSCCTTTS-CCCCC
T ss_pred             HhcCccCCCeEEEecCCCChHHHH-HHh-hcCCCceeEEEecCcccc-CCccccccc--cccccchhhhhHHhc-CCCcC
Confidence            455668888999999999998754 444 245678999998311000 000011122  123455444432111 12469


Q ss_pred             cEEEecccc--cC---ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          204 DCIFLAALV--GM---SKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       204 D~V~~aa~v--~~---~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      |.|+.+..-  +-   +.+.-.++++-+.+.|+|||-+++--
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            999977421  11   11222578888899999999998864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.36  E-value=0.015  Score=45.50  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||..||+|..|.+..+.........+++-+|++++.. ..+..+.+........++...+|..    ++..-|+|++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~----~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA----ALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG----GGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH----HhccccEEEEec
Confidence            68999999988877665333123346899999999854 3444444443323446667777753    345689998876


Q ss_pred             cccC--------Ch----HHHHHHHHHHHhhc---CCCcEEEEEe
Q 036061          211 LVGM--------SK----EEKVKIIKHIRKYM---KDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~--------~~----~~k~~il~~l~~~l---~pGg~lv~r~  240 (284)
                      .+..        +.    ..-.++++++.+.+   .|++++++-+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            5311        10    01134444444333   6889888766

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.34  E-value=0.0011  Score=53.89  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061          127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY  203 (284)
Q Consensus       127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f  203 (284)
                      ...++++||.-| +|..|..++.||+  ..|++|++.--+++-.+.+++    +|. ..-+.. ..+..+...  ..+.|
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak--~~Ga~Viat~~s~~k~~~~~~----lGa-~~vi~~-~~~~~~~~~~~~~~gv   99 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLA--KRGYTVEASTGKAAEHDYLRV----LGA-KEVLAR-EDVMAERIRPLDKQRW   99 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHH--HTTCCEEEEESCTTCHHHHHH----TTC-SEEEEC-C---------CCSCCE
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHH--HcCCceEEecCchHHHHHHHh----ccc-ceeeec-chhHHHHHHHhhccCc
Confidence            346788999999 5678889999998  479999999999998888876    452 211221 111111111  22469


Q ss_pred             cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      |+||-... +       ..++...+.|+|||+++.-..
T Consensus       100 D~vid~vg-g-------~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         100 AAAVDPVG-G-------RTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEECST-T-------TTHHHHHHTEEEEEEEEECSC
T ss_pred             CEEEEcCC-c-------hhHHHHHHHhCCCceEEEeec
Confidence            99885422 1       246888899999999988654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.23  E-value=0.012  Score=45.73  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             CEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||+|.+|.+-+. |.+.  .+.+|..+|.+++..+...+   +.|     ++.. .|.    ....+.|+||++-
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l~~---~~~-----~~~~-~~~----~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEK---ELG-----VETS-ATL----PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHH---HTC-----CEEE-SSC----CCCCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCCcEEEEeCChhHHHHhhh---hcc-----cccc-ccc----ccccccceEEEec
Confidence            48999999988764322 3331  34799999999977655433   445     2322 222    2345689999863


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      -    +    +.+..+.+-+++.+.+++....|
T Consensus        66 k----P----~~~~~v~~~l~~~~~~viS~~ag   90 (152)
T d1yqga2          66 K----P----QDMEAACKNIRTNGALVLSVAAG   90 (152)
T ss_dssp             C----H----HHHHHHHTTCCCTTCEEEECCTT
T ss_pred             C----H----HHHHHhHHHHhhcccEEeecccC
Confidence            2    1    33556666677777777766554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.0081  Score=43.33  Aligned_cols=71  Identities=13%  Similarity=0.159  Sum_probs=47.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL  211 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~  211 (284)
                      +||-|||-|-.||+++...- +..|..|+|-|+.+...-.   .+++.|.     ++..+.-   ...+.+.|+|+.++.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~---~L~~~Gi-----~i~~gh~---~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTA---YLRKLGI-----PIFVPHS---ADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHHHTTC-----CEESSCC---TTSCCCCSEEEECTT
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHH---HHHHCCC-----eEEeeec---ccccCCCCEEEEecC
Confidence            68999999989999852221 2489999999999744322   2667773     3433322   223456899988877


Q ss_pred             ccC
Q 036061          212 VGM  214 (284)
Q Consensus       212 v~~  214 (284)
                      +..
T Consensus        70 I~~   72 (89)
T d1j6ua1          70 VRD   72 (89)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            743

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.11  E-value=0.02  Score=41.60  Aligned_cols=72  Identities=11%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             CCCCEEEEeccCCChhHHH--HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSI--VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai--~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ...++|.|||.|-.|++++  +|.   ..|.+|+|-|..+.  ...+++ .+.|     +.+..++..+   ...+.|+|
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~---~~G~~VsGSD~~~~--~~~~~L-~~~G-----i~v~~g~~~~---~i~~~d~v   71 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILL---NEGYQISGSDIADG--VVTQRL-AQAG-----AKIYIGHAEE---HIEGASVV   71 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHH---HHTCEEEEEESCCS--HHHHHH-HHTT-----CEEEESCCGG---GGTTCSEE
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHH---hCCCEEEEEeCCCC--hhhhHH-HHCC-----CeEEECCccc---cCCCCCEE
Confidence            5678999999998899984  333   37999999998743  223333 3456     3555565543   23468999


Q ss_pred             EecccccC
Q 036061          207 FLAALVGM  214 (284)
Q Consensus       207 ~~aa~v~~  214 (284)
                      +.++.+..
T Consensus        72 V~S~AI~~   79 (96)
T d1p3da1          72 VVSSAIKD   79 (96)
T ss_dssp             EECTTSCT
T ss_pred             EECCCcCC
Confidence            88877744

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0069  Score=53.51  Aligned_cols=61  Identities=10%  Similarity=0.033  Sum_probs=47.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV  196 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~  196 (284)
                      ..+..|+|||.|+|.+|...+..  ...-+|++||+|+...+.-++...     .++++++.+|+..+
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~--~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeCchhhc
Confidence            35778999999998888776644  122489999999999888776542     25799999999754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0012  Score=51.49  Aligned_cols=95  Identities=8%  Similarity=0.034  Sum_probs=56.8

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||+.||+|.+|.. +..|++   .|..|+.++++++..+..    ...+ .......... ..+.......+|+||++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~---~G~~V~~~~r~~~~~~~~----~~~~-~~~~~~~~~~-~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYCSV----NLVE-TDGSIFNESL-TANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEEEE----EEEC-TTSCEEEEEE-EESCHHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCceEEEEcCHHHhhhh----cccc-CCcccccccc-ccchhhhhcccceEEEee
Confidence            58999999976543 333444   789999999997633211    1112 1111111111 111122335799999864


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      --    .+-..+++.+.++++++..++.-
T Consensus        72 ka----~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          72 KA----WQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             CG----GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             cc----cchHHHHHhhccccCcccEEeec
Confidence            32    45567889999999998876653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0055  Score=57.56  Aligned_cols=115  Identities=11%  Similarity=0.071  Sum_probs=73.9

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhc---CC--------------CcEEEEEeCChHHHHHHHHHHHhcCCCCCC----
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNH---LK--------------STHFDNFDIDEAANDVARQIVSSDIEFEKR----  185 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~---~~--------------g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~----  185 (284)
                      .+.++.+|+|-.||++++-... .++.   ..              ...+.|+|+++.+...|+-++.-.| ....    
T Consensus       161 ~~~~~~~i~DPacGsG~fL~~a-~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~-~~~~i~~~  238 (524)
T d2ar0a1         161 KPQPREVVQDPAAGTAGFLIEA-DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHG  238 (524)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHH-HHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGT
T ss_pred             cCccchhhcchhhhcchhhHHH-HHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc-cccccccc
Confidence            3567789999999998774322 1211   00              1258999999999999998876555 2221    


Q ss_pred             eEEEEecccccc-ccCCCccEEEecccccCCh-------------HHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          186 MKFVTCDIMQVK-EKLGEYDCIFLAALVGMSK-------------EEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       186 I~f~~~D~~~~~-~~~~~fD~V~~aa~v~~~~-------------~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      -.+..+|...-. .....||+|+.+.-.+...             ....-+++++.+.|+|||++.+-.++|
T Consensus       239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            133444443211 1235799999876332211             112458999999999999988876554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.89  E-value=0.075  Score=41.16  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             CEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDE---AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~---~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .||..|| +|..|.+..++........++.-+|++.   .+-..|..+.+... ...++++..+|..    ++...|+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~----~~~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYE----DTAGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGG----GGTTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHH----HhhhcCEEE
Confidence            4899999 7988877666555233445799999863   23346667666555 4567777777654    345789999


Q ss_pred             ecccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..    +++..+-        .++.+.+.+. .|+|++++-+
T Consensus        76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvt  119 (142)
T d1o6za1          76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTS  119 (142)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECC
T ss_pred             EecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEec
Confidence            87754    3432221        4445555544 6788887765

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.87  E-value=0.0035  Score=53.80  Aligned_cols=83  Identities=10%  Similarity=0.047  Sum_probs=61.7

Q ss_pred             cEEEEEeCChHHHHHH---HHHHHhcCCCCCCeEEEEeccccccc-----cCCCccEEEecccc----c----CChHHHH
Q 036061          157 THFDNFDIDEAANDVA---RQIVSSDIEFEKRMKFVTCDIMQVKE-----KLGEYDCIFLAALV----G----MSKEEKV  220 (284)
Q Consensus       157 ~~V~~iDid~~ai~~A---r~~~~~~G~l~~~I~f~~~D~~~~~~-----~~~~fD~V~~aa~v----~----~~~~~k~  220 (284)
                      ..+.|.|+|+++++.|   ++++++.| +++.|++.++|+.+...     ....+++|+.+.--    +    ...+...
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~Ag-l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~  193 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTAEG-GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA  193 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTT-SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHcC-CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHH
Confidence            3478999999999999   46899999 79999999999875432     22467899887622    2    1224567


Q ss_pred             HHHHHHHhhcCCCcEEEEEe
Q 036061          221 KIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       221 ~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++...+.+.+.....+++.+
T Consensus       194 ~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         194 GLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHccCCCCcEEEEeC
Confidence            88888999887666666643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.86  E-value=0.004  Score=49.91  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=66.9

Q ss_pred             HhcCC-CCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-cccc--
Q 036061          124 DENGV-VNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-QVKE--  198 (284)
Q Consensus       124 ~~~~~-~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-~~~~--  198 (284)
                      .+.+. .++.+||.-| +|..|..++.||+  ..|++|++..-+++-.+.+++    +|.  + ..+...|.. +...  
T Consensus        16 ~~~g~~~~~~~VLV~gaaGgVG~~avQlAk--~~Ga~Viat~~s~~k~~~~~~----lGa--d-~vi~~~~~~~~~~~~~   86 (167)
T d1tt7a2          16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLN--KRGYDVVASTGNREAADYLKQ----LGA--S-EVISREDVYDGTLKAL   86 (167)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHH--HHTCCEEEEESSSSTHHHHHH----HTC--S-EEEEHHHHCSSCCCSS
T ss_pred             HHhcCCCCCCEEEEeCCcchHHHHHHHHHH--HcCCceEEEecCHHHHHHHHh----hcc--c-ceEeccchhchhhhcc
Confidence            34443 4566799888 6889999999999  478999999999887777655    563  2 222222211 1111  


Q ss_pred             cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-+.+|+|+-...        .+.+++..+.|+|||++++-.
T Consensus        87 ~~~gvd~vid~vg--------g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          87 SKQQWQGAVDPVG--------GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CCCCEEEEEESCC--------THHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEecCc--------HHHHHHHHHHhccCceEEEee
Confidence            1235999885432        136788999999999998754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.73  E-value=0.036  Score=44.27  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             CCCEEEEeccCCChhHHHH---HHhh-cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEE-EeccccccccC
Q 036061          130 NPKKVAFVGSGPMPLTSIV---MAKN-HLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFV-TCDIMQVKEKL  200 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~---LA~~-~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~  200 (284)
                      +.-+|..||+|..+.+.+.   +++. .+.+.+++-+|+|++.++.    +++.....+ .  ..++. +.|-.+   .+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~d~~e---al   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA-P--DIEFAATTDPEE---AF   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC-T--TSEEEEESCHHH---HH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhC-C--CcceEecCChhh---cc
Confidence            3468999999976543221   2220 1234689999999998764    333344445 2  33433 334332   34


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      .+.|+|+.++.+
T Consensus        76 ~~AD~Vvitag~   87 (167)
T d1u8xx1          76 TDVDFVMAHIRV   87 (167)
T ss_dssp             SSCSEEEECCCT
T ss_pred             CCCCEEEECCCc
Confidence            578999988765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.035  Score=46.85  Aligned_cols=77  Identities=8%  Similarity=0.022  Sum_probs=58.9

Q ss_pred             CCCEEEEeccCCChhHH---HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLTS---IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~ta---i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.||.-|++ .|+..   ..|++   .|++|+..|++++.++.+.+.++..| ...++.++.+|+.+..         
T Consensus         9 k~Kv~lITGas-~GIG~aiA~~la~---~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAAVARALVQ---QGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCCCHHHHHHHHHHH
Confidence            57889999987 35543   33444   79999999999999999888888887 4568899999998632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        84 ~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          84 RSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHCCCSEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             23467899887764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.04  Score=42.45  Aligned_cols=100  Identities=6%  Similarity=0.030  Sum_probs=65.5

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V  206 (284)
                      ..+|+.+|+|..|...+..-.  ..|..|+.||.|++......+....     ..+.++.||+++..    ....+.|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~--~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEE
Confidence            357999999976654333222  3688999999999764433332222     35799999998632    134568888


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +...-    ...+.-..-...+.+.|...++.+..
T Consensus        76 i~~~~----~d~~n~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          76 LALSD----NDADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSS----CHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEccc----cHHHHHHHHHHHHHhCCCCceEEEEc
Confidence            75432    14444455566778889998888863

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.60  E-value=0.026  Score=42.43  Aligned_cols=93  Identities=11%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~  207 (284)
                      +.|+.+|.|..|.   .+++ .+.+..|+.||.|++..+..++    .|     +.++.||+.+..    ....+.+.++
T Consensus         1 kHivI~G~g~~g~---~l~~-~L~~~~i~vi~~d~~~~~~~~~----~~-----~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTL---ECLR-ELRGSEVFVLAEDENVRKKVLR----SG-----ANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHH---HHHH-TSCGGGEEEEESCTTHHHHHHH----TT-----CEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHH---HHHH-HHcCCCCEEEEcchHHHHHHHh----cC-----ccccccccCCHHHHHHhhhhcCcEEE
Confidence            4688899986543   3566 4678889999999998776543    34     689999987632    1345678877


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      +...    .....-.+-...|.+.|...++++..
T Consensus        68 ~~~~----~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          68 VNLE----SDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             ECCS----SHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             Eecc----chhhhHHHHHHHHHHCCCceEEEEEc
Confidence            5432    24444556667778899998888863

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.58  E-value=0.021  Score=44.74  Aligned_cols=90  Identities=19%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||-+||.|.+|..-. .|++   .|.+|+++|++++..+..++    .|.     .. +.+..+..   ...|+||++-
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~---~G~~V~~~d~~~~~~~~~~~----~~~-----~~-~~~~~e~~---~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVSDRNPEAIADVIA----AGA-----ET-ASTAKAIA---EQCDVIITML   64 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TTC-----EE-CSSHHHHH---HHCSEEEECC
T ss_pred             CEEEEEehhHHHHHHHHHHHH---CCCeEEEEeCCcchhHHHHH----hhh-----hh-cccHHHHH---hCCCeEEEEc
Confidence            4799999999887622 2334   78999999999998776655    231     21 22333222   3579998753


Q ss_pred             cccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~  240 (284)
                      .   +.+.-..++   +.+...++||..++-.+
T Consensus        65 ~---~~~~v~~v~~~~~~~~~~~~~g~iiid~s   94 (161)
T d1vpda2          65 P---NSPHVKEVALGENGIIEGAKPGTVLIDMS   94 (161)
T ss_dssp             S---SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             C---CHHHHHHHHhCCcchhhccCCCCEEEECC
Confidence            2   134455555   45888899998877655

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.022  Score=48.35  Aligned_cols=106  Identities=17%  Similarity=0.151  Sum_probs=74.2

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      .++||+.|=.|.-|+.   +..||+  ..|++|+..+++++..+.+.+.++..|.   ++.++.+|+.+..         
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~--~~g~~Vi~~~r~~~~~~~~~~~l~~~~~---~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCR--LFSGDVVLTARDVTRGQAAVQQLQAEGL---SPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHH--HSSSEEEEEESSHHHHHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEEecCCHHHHHHHHHHH
Confidence            3688877722233442   344555  2589999999999999999998888773   7899999998743         


Q ss_pred             -ccCCCccEEEecccccCC-------hHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          198 -EKLGEYDCIFLAALVGMS-------KEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v~~~-------~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                       ...+..|+++.++.+...       .++.           ..+.+.+.+.|+++|.++.-+
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence             234679999988765211       1111           246777889999999887755

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.53  E-value=0.021  Score=42.12  Aligned_cols=92  Identities=8%  Similarity=0.019  Sum_probs=55.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++||.||+|..|..-.....  ..|++|+.++.+...-  -++++ .    ..+++++..+..+  .++..+++|+.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll--~~ga~v~v~~~~~~~~--~~~~~-~----~~~i~~~~~~~~~--~dl~~~~lv~~   78 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLL--EAGARLTVNALTFIPQ--FTVWA-N----EGMLTLVEGPFDE--TLLDSCWLAIA   78 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHH--HTTBEEEEEESSCCHH--HHHHH-T----TTSCEEEESSCCG--GGGTTCSEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEeccCChH--HHHHH-h----cCCceeeccCCCH--HHhCCCcEEee
Confidence            46789999999976655443322  3789999887765421  11111 2    2468888776643  45567899987


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +..-   .+..    +++++..++-|+++-
T Consensus        79 at~d---~~~n----~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          79 ATDD---DTVN----QRVSDAAESRRIFCN  101 (113)
T ss_dssp             CCSC---HHHH----HHHHHHHHHTTCEEE
T ss_pred             cCCC---HHHH----HHHHHHHHHcCCEEE
Confidence            6442   2333    344445555576653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.50  E-value=0.009  Score=47.65  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ..|-+||.|.+|..   ||+++ ..|.+|+++|++++.++...+.-.+.    .... -.....+........|.+++..
T Consensus         3 ~nIg~IGlG~MG~~---mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~~~~-~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQN---LILNMNDHGFVVCAFNRTVSKVDDFLANEAKG----TKVL-GAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHH---HHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT----SSCE-ECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHH---HHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc----cccc-chhhhhhhhhhhcccceEEEec
Confidence            57999999987754   33322 36899999999999877655421111    1111 1112222222334578887653


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .-   .+.-..+++.+...+++|.+++--+
T Consensus        75 ~~---~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          75 KA---GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             CT---THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             Cc---hHHHHHHHHHHHhccccCcEEEecC
Confidence            31   2555678899999999998877654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.032  Score=41.35  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=44.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcCC---CCCCeEEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDIE---FEKRMKFVTC  191 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G~---l~~~I~f~~~  191 (284)
                      .-|++|+.||+|+.|+-.....+  ..|.+||-++.        |++..+..++.+++.|.   +..+++-+..
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVIN--GLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             hCCCEEEEECCChhhHHHHHHhh--ccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            56799999999987776554443  37899999998        56777888888888874   2345544433

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.48  E-value=0.048  Score=41.93  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH-HHHHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR-QIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar-~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a  209 (284)
                      +||..||+|..|.+............+++-+|++++..+.-. ...........+.++.. +|-    .++.+.|+|++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~----~~~~dadvvvit   76 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY----ADTANSDIVIIT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH----HHhcCCeEEEEE
Confidence            489999999888774443332233468999999987654332 22221110123455543 442    234678999888


Q ss_pred             ccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+    +++..+        -.++.+.+.++ .|+|++++-+
T Consensus        77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt  118 (142)
T d1guza1          77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS  118 (142)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred             EecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEec
Confidence            754    333221        14455566555 5888877754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.48  E-value=0.034  Score=43.07  Aligned_cols=103  Identities=21%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .||..||+|..|.+..+.........+++-+|++++.. ..|..+.+... .........+|-    .+...-|+|++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~~~~~~----~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGDY----SDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--CG----GGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc-cCCCeeEeeCcH----HHhCCCceEEEec
Confidence            48999999987777654444234456899999999753 45555554444 344566655553    2455689999887


Q ss_pred             ccc----CChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVG----MSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~----~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...    ++..+        -.++.+.+.++ .|.|++++-+
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvt  117 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS  117 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEec
Confidence            652    22111        13444555554 6788777755

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.018  Score=46.28  Aligned_cols=98  Identities=14%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             hcCCC-CCCEEEEe-ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--
Q 036061          125 ENGVV-NPKKVAFV-GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--  200 (284)
Q Consensus       125 ~~~~~-~~~~VL~I-GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--  200 (284)
                      +.+.. ++.+||.. |+|..|..++.||+  ..|++|+++..+++..+.+++    +|.   . .++.-+-.+....+  
T Consensus        25 ~~g~~~~~~~vlV~gasGGVG~~aiQlAk--~~Ga~Via~~~~~~k~~~~~~----lGa---d-~vi~~~~~~~~~~l~~   94 (177)
T d1o89a2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLH--KLGYQVVAVSGRESTHEYLKS----LGA---S-RVLPRDEFAESRPLEK   94 (177)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHH--HTTCCEEEEESCGGGHHHHHH----HTE---E-EEEEGGGSSSCCSSCC
T ss_pred             HhCCCCCCCcEEEEEccccchHHHHHHHH--HcCCCeEEEecchhHHHHHHh----hcc---c-cccccccHHHHHHHHh
Confidence            44443 33466655 45778999999999  479999999999999776665    452   1 22222222222222  


Q ss_pred             CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..+|.|+ +. |+   .   ..+....+.|++||+++.-.
T Consensus        95 ~~~~~vv-D~-Vg---g---~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          95 QVWAGAI-DT-VG---D---KVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             CCEEEEE-ES-SC---H---HHHHHHHHTEEEEEEEEECC
T ss_pred             hcCCeeE-EE-cc---h---HHHHHHHHHhccccceEeec
Confidence            3478876 33 32   2   36789999999999998854

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.18  E-value=0.16  Score=39.23  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             CEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHH---HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAA---NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~a---i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +||..|| +|..|.+..++......-.++.-+|++++.   -..|..+.+........++.....-.+ ..++.+.|+|+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            4799999 598888766655422223589999999754   235666665432122344443221111 23456789999


Q ss_pred             ecccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEE
Q 036061          208 LAALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       208 ~aa~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r  239 (284)
                      +.+..    +++..+-        .++.+.+.++ .|++++++.
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~iivVt  122 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIFVIT  122 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECS
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEEEEc
Confidence            88754    4443221        3344555555 478877653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.07  E-value=0.16  Score=38.99  Aligned_cols=104  Identities=25%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a  209 (284)
                      +||..||+|-.|.+..+.......-.+++-+|++++.. ..|..+-+....+....++.. +|.    .++.+.|+|++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~----~~~~~adiVvit   76 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY----SLLKGSEIIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH----HHhccccEEEEe
Confidence            48999999977776554333122335799999998774 334444443321334555544 343    245678999988


Q ss_pred             ccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..    +++..+-        .++.+.+.+. .|.+.+++-+
T Consensus        77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt  118 (142)
T d1ojua1          77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT  118 (142)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred             ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence            754    3322221        3344444444 6788877765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.088  Score=41.56  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      +..||..||+|..|.+..+.........++.-+|++++. ...|..+.+.............+|..    +..+.|+|++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~----~~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN----VSANSKLVII   93 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG----GGTTEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh----hhccccEEEE
Confidence            346899999999888876655523334579999999754 35666665544323344444455532    3457899988


Q ss_pred             cccc----cCCh----HHHHHHHHHHHhhc---CCCcEEEEEe
Q 036061          209 AALV----GMSK----EEKVKIIKHIRKYM---KDGGVLLVRS  240 (284)
Q Consensus       209 aa~v----~~~~----~~k~~il~~l~~~l---~pGg~lv~r~  240 (284)
                      .+..    +++.    ..-.++++.+.+.+   .|+|++++-+
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            7754    2222    22344555544432   6889888766

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.079  Score=41.64  Aligned_cols=77  Identities=12%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CEEEEeccCCChhHHHH--HHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          132 KKVAFVGSGPMPLTSIV--MAKN--HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~--LA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      +||..||+|..|.+...  +++.  .....+++-+|+|++..+.+....++.-....++.. ..|   ....+.+-|+|+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~---~~~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDT---FEGAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSS---HHHHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecC---cccccCCCCEEE
Confidence            48999999976644332  2221  134679999999999988777766654212223333 222   123445679999


Q ss_pred             ecccc
Q 036061          208 LAALV  212 (284)
Q Consensus       208 ~aa~v  212 (284)
                      +.+.+
T Consensus        77 ita~~   81 (162)
T d1up7a1          77 FQFRP   81 (162)
T ss_dssp             ECCCT
T ss_pred             Eeccc
Confidence            88776

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.92  E-value=0.032  Score=44.39  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CEEEEeccCCChhHHHH--HHhhc--CCCcEEEEEeCChHH--HHHHH----HHHHhcCCCCCCeEEE-EeccccccccC
Q 036061          132 KKVAFVGSGPMPLTSIV--MAKNH--LKSTHFDNFDIDEAA--NDVAR----QIVSSDIEFEKRMKFV-TCDIMQVKEKL  200 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~--LA~~~--~~g~~V~~iDid~~a--i~~Ar----~~~~~~G~l~~~I~f~-~~D~~~~~~~~  200 (284)
                      .||..||+|..+.+...  ++...  +...+++-+|++++.  .+...    +.+...+   ..+++. +.|-   ...+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~---~~~~~~~~td~---~~al   75 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAG---VPIEIHLTLDR---RRAL   75 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT---CCCEEEEESCH---HHHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcC---CCceeeecCCc---hhhc
Confidence            48999999977654322  22211  224699999999864  22222    2233444   244443 2332   2334


Q ss_pred             CCccEEEecccccCChH--------------------------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALVGMSKE--------------------------------EKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~~--------------------------------~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .+.|+|+..+.++..+.                                .-.++.+.+.++ .|+++++.-+
T Consensus        76 ~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vt  146 (169)
T d1s6ya1          76 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFT  146 (169)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             CCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeC
Confidence            57899998887632110                                014566777776 8999988865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.90  E-value=0.19  Score=39.56  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=65.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .+..||..||+|..|.+..+.......-.++.-+|++++.. ..|..+.+.............+|.    .+..+.|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~----~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY----SVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG----GGGTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch----hhcccccEEE
Confidence            45579999999988877665554233445899999997543 455555553321223433344443    2456789988


Q ss_pred             ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +.+..    +++..+        -.++...+.+. .|+|++++-+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvt  137 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVS  137 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence            77653    333322        14456666666 7888887765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.87  E-value=0.15  Score=42.56  Aligned_cols=75  Identities=13%  Similarity=0.044  Sum_probs=56.1

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      .++.+|..|++ .|+.   +..||   ..|++|+.+|++++.++.+.+.++..|.   ++.++.+|+++..         
T Consensus         9 enKvalITGas-~GIG~a~a~~la---~~Ga~V~~~~r~~~~l~~~~~~l~~~g~---~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLA---KSVSHVICISRTQKSCDSVVDEIKSFGY---ESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHT---TTSSEEEEEESSHHHHHHHHHHHHTTTC---CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHH---HcCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCHHHHHHHHHHH
Confidence            45677777875 3543   33343   4899999999999999998888888773   7999999998632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        82 ~~~~g~iDilvnnag   96 (251)
T d2c07a1          82 LTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHCSCCCEEEECCC
T ss_pred             HHhcCCceeeeeccc
Confidence             24568999887664

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.76  E-value=0.035  Score=42.91  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEE-EeccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~~a  209 (284)
                      +||..||+|..|.+..++... ..-+.+..+|++++..+- +..+..........+++. ++|..    +..+-|+|++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~-~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~----~~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA-KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA----DTANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG----GGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH----HhcCCCEEEEe
Confidence            589999999888775433331 233589999999875433 444322211112344454 44533    34567999887


Q ss_pred             ccc----cCChHH----H----HHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEE----K----VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~----k----~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..    +++..+    -    .++.+.+.++ .|.|.+++-+
T Consensus        77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt  118 (142)
T d1uxja1          77 SGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN  118 (142)
T ss_dssp             CSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred             eeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence            754    232211    1    3455555555 6788888865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.48  E-value=0.038  Score=44.37  Aligned_cols=80  Identities=14%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             CCCCCEEEEeccC-CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc---cccccCCC
Q 036061          128 VVNPKKVAFVGSG-PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM---QVKEKLGE  202 (284)
Q Consensus       128 ~~~~~~VL~IGsG-~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~---~~~~~~~~  202 (284)
                      .-++++|+..|++ .+|. .+..|++   .|++|+.++++++.++...+.+....    ++.+...|+.   ++....++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~   92 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAG---EGAEVVLCGRKLDKAQAAADSVNKRF----KVNVTAAETADDASRAEAVKG   92 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHH----TCCCEEEECCSHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHh---hccchhhcccchHHHHHHHHHHHhcc----chhhhhhhcccHHHHHHHhcC
Confidence            3578999999953 3332 2334555   79999999999999887777766543    3345555554   33334568


Q ss_pred             ccEEEecccccC
Q 036061          203 YDCIFLAALVGM  214 (284)
Q Consensus       203 fD~V~~aa~v~~  214 (284)
                      .|+|+.++.++.
T Consensus        93 iDilin~Ag~g~  104 (191)
T d1luaa1          93 AHFVFTAGAIGL  104 (191)
T ss_dssp             CSEEEECCCTTC
T ss_pred             cCeeeecCcccc
Confidence            999998776543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.45  E-value=0.031  Score=44.18  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|-+||.|.+|..   ||+++ ..|..|+++|++++..+...+.-.... ....... ..+..++.......+.++...
T Consensus         2 MkIGvIGlG~MG~~---ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGAN---LALNIAEKGFKVAVFNRTYSKSEEFMKANASAP-FAGNLKA-FETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHH---HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTST-TGGGEEE-CSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHH---HHHHHHHCCCeEEEEECCHHHHHHHHHcCCccc-cccchhh-hhhhhHHHHhcccceEEEEee
Confidence            57999999977654   34322 368999999999998776655433222 1122221 122222232333445554332


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..   ......++..+...+++|.+++-.+
T Consensus        77 ~~---~~~~~~~~~~~~~~~~~~~iii~~s  103 (178)
T d1pgja2          77 QA---GAATDSTIEQLKKVFEKGDILVDTG  103 (178)
T ss_dssp             CC---SHHHHHHHHHHHHHCCTTCEEEECC
T ss_pred             cC---cchhhhhhhhhhhhccccceecccC
Confidence            21   2445567888999999998887655

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.45  E-value=0.066  Score=41.77  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      ++|.+||.|-+|.. |..|++   .|.+|+++|++++..+...+    .|.     . .+.+..+   .....|+|++.-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~---~g~~v~~~d~~~~~~~~~~~----~~~-----~-~~~~~~e---~~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK---AGYLLNVFDLVQSAVDGLVA----AGA-----S-AARSARD---AVQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHH----TTC-----E-ECSSHHH---HHTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHH---CCCeEEEEECchhhhhhhhh----hhc-----c-ccchhhh---hccccCeeeecc
Confidence            47999999988764 333444   68999999999988765554    331     1 1122222   234679888653


Q ss_pred             cccCChHHHHHHHHH---HHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKH---IRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~---l~~~l~pGg~lv~r~  240 (284)
                      .-   ...-..++..   +...++||.+++--+
T Consensus        66 ~~---~~~~~~v~~~~~~~~~~l~~g~iiid~s   95 (162)
T d3cuma2          66 PA---SQHVEGLYLDDDGLLAHIAPGTLVLECS   95 (162)
T ss_dssp             SC---HHHHHHHHHSTTCHHHHSCTTCEEEECS
T ss_pred             cc---hhhHHHHHhccccccccCCCCCEEEECC
Confidence            32   2333445433   677788888776543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.44  E-value=0.12  Score=40.69  Aligned_cols=73  Identities=8%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNF-DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .||..||||.+|-.-+...+ ..++.+++++ |.+++.   |++..++.+ .....++ ..|..++..+ .+.|+|+++.
T Consensus         2 iki~iIG~G~~g~~~~~~l~-~~~~~~i~ai~d~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~ll~~-~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIH-LAPNATISGVASRSLEK---AKAFATANN-YPESTKI-HGSYESLLED-PEIDALYVPL   74 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HCTTEEEEEEECSSHHH---HHHHHHHTT-CCTTCEE-ESSHHHHHHC-TTCCEEEECC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hCCCCEEEEEEeCCccc---cccchhccc-cccceee-cCcHHHhhhc-cccceeeecc
Confidence            38999999987754332222 3578999976 888764   455556766 4445554 3566665543 4689998765


Q ss_pred             c
Q 036061          211 L  211 (284)
Q Consensus       211 ~  211 (284)
                      -
T Consensus        75 p   75 (184)
T d1ydwa1          75 P   75 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.35  E-value=0.086  Score=41.14  Aligned_cols=107  Identities=18%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      |..||..||+|..|.+...++....- ..+.-+|++++.. ..|..+.+.......+..+...+-   ..++...|+|++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~---~~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT---YDDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC---GGGGTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEeccc---ccccCCCcEEEE
Confidence            35699999999877765555442222 5899999987643 344444332110123445544332   224467899988


Q ss_pred             cccc----cCC-----h----HHHHHHHHHHHhhc---CCCcEEEEEe
Q 036061          209 AALV----GMS-----K----EEKVKIIKHIRKYM---KDGGVLLVRS  240 (284)
Q Consensus       209 aa~v----~~~-----~----~~k~~il~~l~~~l---~pGg~lv~r~  240 (284)
                      .+.+    +++     .    ..-.++++.+.+.+   .|++++++-+
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            8754    221     1    11234445444433   4999887755

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.32  E-value=0.06  Score=40.01  Aligned_cols=52  Identities=23%  Similarity=0.234  Sum_probs=40.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDIE  181 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G~  181 (284)
                      ...|++|+.||+|+.|+-......  ..|.+||-++.        |+++.+..++.+++.|.
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCEEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            356899999999976665443333  47999999997        78888888888888773

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.25  E-value=0.1  Score=40.29  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             CEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .||..||+ |..|.+..++......-.+++-+|+++. ...|..+.+... . ........ ..+.....+.-|+|++.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~-~-~~~~~~~~-~~~~~~~~~~aDivVita   76 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIET-R-ATVKGYLG-PEQLPDCLKGCDVVVIPA   76 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSS-S-CEEEEEES-GGGHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhh-h-cCCCeEEc-CCChHHHhCCCCEEEECC
Confidence            48999995 9999887666552222357999999863 444544433222 1 11222222 122233456789999876


Q ss_pred             cc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..    +|+..+        -+++.+.+.++ .|.+.+++-+
T Consensus        77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt  117 (144)
T d1mlda1          77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (144)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence            54    333211        26677778777 8889888865

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.09  E-value=0.31  Score=41.95  Aligned_cols=108  Identities=13%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEecccc-ccccC--CCcc
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIMQ-VKEKL--GEYD  204 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~~-~~~~~--~~fD  204 (284)
                      .....|+.+||| +-..+..|.  ..++.++.-+|. |+.++.-++++++.|. ...+.+++..|..+ +...+  ..||
T Consensus        88 ~g~~qvV~LGaG-lDTr~~Rl~--~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d  163 (297)
T d2uyoa1          88 DGIRQFVILASG-LDSRAYRLD--WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFD  163 (297)
T ss_dssp             TTCCEEEEETCT-TCCHHHHSC--CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred             hCCCeEEEeCcc-cCChhhhcC--CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCC
Confidence            456788889999 444443332  145667777773 8888888888887762 23566788888764 11111  1244


Q ss_pred             ----EEEecccc--cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          205 ----CIFLAALV--GMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       205 ----~V~~aa~v--~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                          .+|++-.+  -++.++-.++++.+....+||+.|++..
T Consensus       164 ~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         164 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                45544433  4577888999999999999999999865

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.03  E-value=0.11  Score=43.65  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+   .+..||+   .|++|+.+|++++.++.+.+.++..|.   ++.++.+|+.+..         
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAE---EGTAIALLDMNREALEKAEASVREKGV---EARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTTS---CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCHHHHHHHHHHH
Confidence            57888888986 344   3556666   899999999999999999998888773   7899999998632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence             23467899886653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.11  Score=40.30  Aligned_cols=104  Identities=16%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             CEEEEec-cCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVG-SGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IG-sG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      +||..|| +|..|.+..+ |+.......++.-+|+++.+-..|..+-+..-  ........++- + ..+...-|+|++.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~--~~~~~~~~~~~-~-~~~~~~aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT--AVKIKGFSGED-A-TPALEGADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCS--SCEEEEECSSC-C-HHHHTTCSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCcc--ccCCcEEEcCC-C-ccccCCCCEEEEC
Confidence            4899999 5988866544 44323456789999999877666666555432  22333332221 1 2234568999988


Q ss_pred             ccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          210 ALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       210 a~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      +..    +++..+        -.++.+++.++ .|.+.+++-+
T Consensus        77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvt  118 (145)
T d2cmda1          77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIIT  118 (145)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEcc
Confidence            754    332211        15566777766 6888777655

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.97  E-value=0.079  Score=44.90  Aligned_cols=78  Identities=18%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      ++++++.-|++ .|+   ++..||+   .|++|+..|++++.++.+.+.+.+.|.-..++.++.+|+++..         
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSS-NGIGRSAAVIFAK---EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            47888888886 355   4556666   8999999999999999988888887633468999999988632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence             13457899987764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.92  E-value=0.29  Score=40.72  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=69.9

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQ-IVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++.++.-|++ .|+   ++..||+   .|++|...|++++.++.+.+ +.++.|   .++.++.+|+.+..        
T Consensus         4 ~gK~~lITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           4 RGRVALVTGGS-RGLGFGIAQGLAE---AGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHH
Confidence            57889999986 354   3556666   89999999999988766554 445656   47899999998632        


Q ss_pred             --ccCCCccEEEeccccc-------CChHHH-----------HHHHHHHHhhcCC--CcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALVG-------MSKEEK-----------VKIIKHIRKYMKD--GGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v~-------~~~~~k-----------~~il~~l~~~l~p--Gg~lv~r~  240 (284)
                        ...+..|+++.++.+.       ++.++.           ..+.+.+.++|+.  +|.++.-+
T Consensus        77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence              2346799998776441       233332           4455667777743  45666554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.87  E-value=0.025  Score=45.44  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=57.2

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEecccccccc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      ++|..||.|-+|++....+.   .|.+|+|+|+|++.++.-++            +.+...   .+..+...+.    ..
T Consensus         1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~---~~~~~~~~~~----~~   70 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ---LSIKATLDSK----AA   70 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSC---CCEEEESCHH----HH
T ss_pred             CEEEEECCChhHHHHHHHHH---CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhh---hhhhccchhh----hh
Confidence            58999999977776544443   58999999999998876552            222211   2333322221    11


Q ss_pred             CCCccEEEecccccCC-------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          200 LGEYDCIFLAALVGMS-------KEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       200 ~~~fD~V~~aa~v~~~-------~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                      ..++|+++++.-...+       ...-....+.+.. .+++..+++++.
T Consensus        71 ~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~St  118 (196)
T d1dlja2          71 YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (196)
T ss_dssp             HHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             hhccccccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeee
Confidence            2346777766422111       1112334444444 478888888883

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.85  E-value=0.012  Score=48.97  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      ...|++|+.||+|+.|+++.+...  ..|.+|+-+|-++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~--~~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLA--GAGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHH--HHTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHH--HCCCCEEEEeCCC
Confidence            467899999999999998776544  2688999999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.79  E-value=0.039  Score=42.82  Aligned_cols=83  Identities=11%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             CEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||.+||||.+|-+   |++. ...+.+++..|.+++..+   ++.++.|.   .+   ..|..++.   ...|+||++.
T Consensus         1 MkIg~IG~G~mG~a---l~~~l~~~~~~i~v~~r~~~~~~---~l~~~~g~---~~---~~~~~~~~---~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASA---IIKGLKQTPHELIISGSSLERSK---EIAEQLAL---PY---AMSHQDLI---DQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHH---HHHHHTTSSCEEEEECSSHHHHH---HHHHHHTC---CB---CSSHHHHH---HTCSEEEECS
T ss_pred             CEEEEEeccHHHHH---HHHHHHhCCCeEEEEcChHHhHH---hhccccce---ee---echhhhhh---hccceeeeec
Confidence            58999999988754   2222 235789999999987654   44445563   11   12332222   3589999763


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLL  237 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv  237 (284)
                      -    +.    .++++.+.++++..++
T Consensus        66 k----p~----~~~~vl~~l~~~~~ii   84 (152)
T d2ahra2          66 K----PQ----LFETVLKPLHFKQPII   84 (152)
T ss_dssp             C----GG----GHHHHHTTSCCCSCEE
T ss_pred             c----hH----hHHHHhhhcccceeEe
Confidence            2    22    3455566788877654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.75  E-value=0.039  Score=43.26  Aligned_cols=107  Identities=19%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEE-EeccccccccCCCccEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V  206 (284)
                      .+..||..||+|..|.+..++... .+=++++.+|++++.. ..|..+.+............ +.|..   ..+.+-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~-~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYE---AALTGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHH---HHHTTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchh---hhhcCCCeE
Confidence            567899999999888664443331 2225899999998643 34444433221111232232 23321   233567999


Q ss_pred             EecccccC---------ChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          207 FLAALVGM---------SKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       207 ~~aa~v~~---------~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ++++.++.         +..+        -.++.+.+.++ .|.|++++-+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs  130 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT  130 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence            98775421         1111        13444455444 6888888765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.69  E-value=0.16  Score=39.80  Aligned_cols=79  Identities=13%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      .|..+...++++||.+|+|..+-+.++-..  ..|+ +|+-+.++++   .|+++.+..+.     .+.  +  .  ...
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~--~~g~~~I~I~nR~~~---ka~~L~~~~~~-----~~~--~--~--~~~   71 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFK--NSGFEKLKIYARNVK---TGQYLAALYGY-----AYI--N--S--LEN   71 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHH--HTTCCCEEEECSCHH---HHHHHHHHHTC-----EEE--S--C--CTT
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHH--HCCCCEEEEecccHH---HHHHHHHhhhh-----hhh--h--c--ccc
Confidence            455667678899999999965544333222  3564 7888999986   45666666662     221  1  1  123


Q ss_pred             CCccEEEecccccCCh
Q 036061          201 GEYDCIFLAALVGMSK  216 (284)
Q Consensus       201 ~~fD~V~~aa~v~~~~  216 (284)
                      .++|+|+.+.-+||..
T Consensus        72 ~~~DliINaTpiGm~~   87 (167)
T d1npya1          72 QQADILVNVTSIGMKG   87 (167)
T ss_dssp             CCCSEEEECSSTTCTT
T ss_pred             cchhhheeccccCCcc
Confidence            4799998776778743

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.21  Score=41.57  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      .++.+|.-|++ .|+.   +..||+   .|++|...|++++.++.+.+.+.... -..++.++.+|+++..         
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLL---KGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHhc-CCCcEEEEEeecCCHHHHHHHHHHH
Confidence            46788888876 3443   444555   89999999999999888877765543 2358999999998732         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence             234678999988765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.057  Score=40.32  Aligned_cols=51  Identities=10%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh--------HHHHHHHHHHHhcCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE--------AANDVARQIVSSDIE  181 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~--------~ai~~Ar~~~~~~G~  181 (284)
                      ..|++++.||+|++|+-...+..  ..|.+||-++..+        ++.+..++.+++.|.
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~--~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYS--RLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEECCCchHHHHHHHHH--hhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            56899999999987765444333  3799999998754        899999999999884

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.42  E-value=0.087  Score=40.29  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=49.4

Q ss_pred             CCCEEEEec-cCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          130 NPKKVAFVG-SGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       130 ~~~~VL~IG-sG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .-++|.+|| .|.+|-+   ||++. ..|..|+++|+++......                          .....|.++
T Consensus         8 ~~~kI~iIGg~G~mG~~---la~~L~~~G~~V~~~d~~~~~~~~~--------------------------~~~~~~~v~   58 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGL---FARYLRASGYPISILDREDWAVAES--------------------------ILANADVVI   58 (152)
T ss_dssp             TCCCEEEETTTSHHHHH---HHHHHHTTTCCEEEECTTCGGGHHH--------------------------HHTTCSEEE
T ss_pred             CCCeEEEEcCCCHHHHH---HHHHHHHcCCCcEecccccccccch--------------------------hhhhccccc
Confidence            347999999 6877654   44432 4789999999987543211                          012356666


Q ss_pred             ecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .+..+    ..-..++.++...+++|..++-
T Consensus        59 ~~~~~----~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2          59 VSVPI----NLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             ECSCG----GGHHHHHHHHGGGCCTTSEEEE
T ss_pred             cccch----hhheeeeecccccccCCceEEE
Confidence            55444    4556677788888888776654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.40  E-value=0.36  Score=40.31  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCC-hHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDID-EAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid-~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++++|.-|++ .|+   .+..|++   .|++|+..|++ ++.++...+.+++.|.   ++.++++|+.+..        
T Consensus        17 ~gK~~lITGas-~GIG~aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~---~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          17 EGKVALVTGAG-RGIGREMAMELGR---RGCKVIVNYANSTESAEEVVAAIKKNGS---DAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEeCCchHHHHHHHHHHHhhCC---ceeeEeCCCCCHHHHHHHHHH
Confidence            56889998875 454   4455666   79999999987 5667777777777773   7999999998632        


Q ss_pred             --ccCCCccEEEecccc-------cCChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALV-------GMSKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v-------~~~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...+..|+++.++..       ..+.++.           ..+.+.+.++|+.+|.+++-+
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence              234578988766533       1222332           445677888999888776654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.27  E-value=0.16  Score=39.73  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             CCCCCCEEEEeccCCChhHHHH-HHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIV-MAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD  204 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~-LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD  204 (284)
                      +...+++||.||.|.+|..... |..   .|. +++.+-.+.+   .|.++...+|.     +.  .+..++...+.+||
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~---~g~~~i~v~nRt~~---ka~~l~~~~~~-----~~--~~~~~~~~~l~~~D   86 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVD---RGVRAVLVANRTYE---RAVELARDLGG-----EA--VRFDELVDHLARSD   86 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHH---HCCSEEEEECSSHH---HHHHHHHHHTC-----EE--CCGGGHHHHHHTCS
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHh---cCCcEEEEEcCcHH---HHHHHHHhhhc-----cc--ccchhHHHHhccCC
Confidence            4467899999999965543222 333   455 6888888843   35555556662     22  23344455556899


Q ss_pred             EEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEE
Q 036061          205 CIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVR  239 (284)
Q Consensus       205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r  239 (284)
                      +||.+...+.+.-.+ +.++...+.=+.+ ..+++.
T Consensus        87 ivi~atss~~~ii~~-~~i~~~~~~r~~~~~~~iiD  121 (159)
T d1gpja2          87 VVVSATAAPHPVIHV-DDVREALRKRDRRSPILIID  121 (159)
T ss_dssp             EEEECCSSSSCCBCH-HHHHHHHHHCSSCCCEEEEE
T ss_pred             EEEEecCCCCccccH-hhhHHHHHhcccCCCeEEEe
Confidence            999775432222223 3334443332333 345555

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.22  E-value=0.076  Score=39.01  Aligned_cols=51  Identities=10%  Similarity=0.049  Sum_probs=37.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH--------HHHHHHHHHHhcC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA--------ANDVARQIVSSDI  180 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~--------ai~~Ar~~~~~~G  180 (284)
                      ...|++|+.||+|+.|+-......  ..|.+||-++..+.        +.+...+.+++.|
T Consensus        19 ~~~p~~v~IiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~G   77 (117)
T d1ebda2          19 GEVPKSLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG   77 (117)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             hhcCCeEEEECCCccceeeeeeec--ccccEEEEEEecceecccccchhHHHHHHHHHhcC
Confidence            367899999999987766444433  37999999997654        6677777777766

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.21  E-value=0.2  Score=42.00  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=58.4

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++.-|++ .|+   .+..||+   .|++|...|++++.++.+.+.+...+ ...++.++.+|+.+..         
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGG-SGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETA-PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHC-TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhC-CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            46788888886 355   3556666   89999999999999998888777665 3568999999998632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ..++..|+++.++.
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence             23467899887664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.11  E-value=0.074  Score=40.84  Aligned_cols=45  Identities=13%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEE--eCChHHHHHHHHH
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNF--DIDEAANDVARQI  175 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~i--Did~~ai~~Ar~~  175 (284)
                      -.+++||.||+|.++..-+....  ..|++||-|  |++++...++.+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll--~~GA~VtVvap~~~~~l~~~~~~~   57 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLM--PTGCKLTLVSPDLHKSIIPKFGKF   57 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHG--GGTCEEEEEEEEECTTHHHHHCGG
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCCCHHHHHHHHhc
Confidence            46899999999987766554433  468999988  6678777766553

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.42  Score=39.65  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             CCCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          129 VNPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      -.|+.|+.-|++. |+.   +..||+   .|++|...|++++.++...+.+...|   .++.++.+|+.+..        
T Consensus         5 l~Gkv~lITGas~-GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           5 VTGEIVLITGAGH-GIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             CTTCEEEEETTTS-HHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHH
Confidence            3577888888873 443   444555   89999999999999988888888777   48999999998742        


Q ss_pred             --ccCCCccEEEecccc
Q 036061          198 --EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v  212 (284)
                        ...+..|+++.++.+
T Consensus        78 i~~~~g~idilinnag~   94 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHHTCCCSEEEECCCC
T ss_pred             HHHHcCCCceeEeeccc
Confidence              245678998877754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.98  E-value=0.24  Score=41.20  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             CCCCEEEEeccCCCh---hHHHHHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-------
Q 036061          129 VNPKKVAFVGSGPMP---LTSIVMAKNHLKSTHFDN-FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp---~tai~LA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-------  197 (284)
                      -.++.||.-|++ .|   -++..|++   .|++|+. .+.+++.++...+.+...|.   ++.++.+|+.+..       
T Consensus         4 L~GK~alITGas-~GIG~aia~~la~---~G~~Vvi~~~~~~~~~~~~~~~~~~~g~---~~~~~~~D~~~~~~v~~~~~   76 (259)
T d1ja9a_           4 LAGKVALTTGAG-RGIGRGIAIELGR---RGASVVVNYGSSSKAAEEVVAELKKLGA---QGVAIQADISKPSEVVALFD   76 (259)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEcCCChHHHHHHHHHHHHcCC---CceEecCCCCCHHHHHHHHH
Confidence            467899988876 45   34555666   8999876 57788888999999998884   8899999998632       


Q ss_pred             ---ccCCCccEEEeccccc-C------ChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          198 ---EKLGEYDCIFLAALVG-M------SKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~-~------~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                         ...+..|+++.++.+. .      +.++.           ..+.+.+.++|+.+|.+++-.
T Consensus        77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence               1345789988776542 1      11111           456677788888888766544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.91  E-value=0.14  Score=37.50  Aligned_cols=52  Identities=10%  Similarity=0.052  Sum_probs=38.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC--------hHHHHHHHHHHHhcCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID--------EAANDVARQIVSSDIE  181 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid--------~~ai~~Ar~~~~~~G~  181 (284)
                      ...|++++.||+|+.|+-.....+  ..|.+||-++..        +++.+..++.+++.|.
T Consensus        18 ~~~p~~vvIiGgG~~G~E~A~~l~--~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV   77 (115)
T d1lvla2          18 KALPQHLVVVGGGYIGLELGIAYR--KLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI   77 (115)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHh--hcccceEEEeeeccccccccchhHHHHHHHHHhhcc
Confidence            356799999999987765444433  368999999874        5677788888888773

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.91  E-value=0.1  Score=44.11  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=59.5

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++..|++ .|+-   +..||+   .|++|+..|++++.++.+.+.+.+.|.-..++.++.+|+.+..         
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQ---EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence            56788888886 3543   445555   8999999999999999999988887633457999999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        80 ~~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCceEEEeCCcc
Confidence             234678999877643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.50  E-value=0.17  Score=41.97  Aligned_cols=104  Identities=13%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             CCCEEEEeccC---CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSG---PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG---~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++++|.-|++   -+|. .+..|++   .|++|+..|++++..+.+.+.....|    +..++.+|+.+..        
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~---~Ga~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE---AGAEVALSYQAERLRPEAEKLAEALG----GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHHTT----CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEeCcHHHHHHHHHhhhccC----cccccccccCCHHHHHHHHHH
Confidence            57899999852   1454 5666777   89999999999998888888777665    4678889987632        


Q ss_pred             --ccCCCccEEEecccc-----------cCChHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALV-----------GMSKEEK-----------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v-----------~~~~~~k-----------~~il~~l~~~l~pGg~lv~r~  240 (284)
                        ...+..|+++.++.+           ..+.++.           ..+.+...+.|+++|.++.-+
T Consensus        80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence              123568988765532           1111222           234456667888888877655

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.47  E-value=0.14  Score=41.93  Aligned_cols=78  Identities=10%  Similarity=0.138  Sum_probs=46.4

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDN-FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .++-||..||||.++..-..-+-...++.+|++ +|++++..+.   ..++.| +...-.+...|..++.. ..+.|+|+
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~---~~~~~~-i~~~~~~~~~d~~ell~-~~~iD~V~  105 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKI---VAAEYG-VDPRKIYDYSNFDKIAK-DPKIDAVY  105 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHH---HHHHTT-CCGGGEECSSSGGGGGG-CTTCCEEE
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHH---HHHhhc-cccccccccCchhhhcc-cccceeee
Confidence            345699999999655432211111346888885 5999877544   444666 33222233466666554 34789998


Q ss_pred             eccc
Q 036061          208 LAAL  211 (284)
Q Consensus       208 ~aa~  211 (284)
                      ++..
T Consensus       106 I~tp  109 (221)
T d1h6da1         106 IILP  109 (221)
T ss_dssp             ECSC
T ss_pred             eccc
Confidence            7654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.44  E-value=0.084  Score=41.47  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             CCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccE
Q 036061          130 NPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNF-DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDC  205 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~  205 (284)
                      +..||..||||.+|-..+ .+.+ ..+..+++++ |++++.-.  .+.+++.|     +.+......++..  +..+.|+
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~-~~~~~el~avas~~~~~~~--~~~a~~~~-----i~~~~~~~d~l~~~~~~~~iDi   74 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLR-NAKYLEMGAMVGIDAASDG--LARAQRMG-----VTTTYAGVEGLIKLPEFADIDF   74 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-HCSSEEEEEEECSCTTCHH--HHHHHHTT-----CCEESSHHHHHHHSGGGGGEEE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHh-hCCcceEEEEEecchhccc--hhhhhhcC-----CcccccceeeeeecccccccCE
Confidence            456999999996665433 2323 3578888886 77764222  22334445     3444443333322  2346899


Q ss_pred             EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCC
Q 036061          206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLD  259 (284)
Q Consensus       206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~g  259 (284)
                      ||++.--+.+ ..+    ....+.++.|-.++-.+...--.+.-|.+.++++.+
T Consensus        75 Vf~ATpag~h-~~~----~~~~~aa~~G~~VID~s~a~~vplvVPevN~~~~~~  123 (157)
T d1nvmb1          75 VFDATSASAH-VQN----EALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLG  123 (157)
T ss_dssp             EEECSCHHHH-HHH----HHHHHHHCTTCEEEECSTTCSSCBCCHHHHTTTTTT
T ss_pred             EEEcCCchhH-HHh----HHHHHHHHcCCEEEEccccccceEEccCcCHHHHhc
Confidence            9976321100 111    122334566666665554322235556666666644

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.28  E-value=0.24  Score=41.25  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCC-hHHHHHHHHHHH-hcCCCCCCeEEEEecccccc-------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDID-EAANDVARQIVS-SDIEFEKRMKFVTCDIMQVK-------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid-~~ai~~Ar~~~~-~~G~l~~~I~f~~~D~~~~~-------  197 (284)
                      +++.+|.-|++ .|+   ++..||+   .|++|+..|++ ++.++...+.+. ..|   .++.++.+|+.+..       
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~---~Ga~V~~~~r~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~   75 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAA---QGADIVLNGFGDAAEIEKVRAGLAAQHG---VKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEECCSCHHHHHHHHHHHHHHHT---SCEEEECCCTTSHHHHHHHHH
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEeCCcHHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHH
Confidence            56778877876 354   4556666   89999999996 566666555544 445   48999999998632       


Q ss_pred             ---ccCCCccEEEeccccc-------CChHHH-----------HHHHHHHHhhcCC--CcEEEEEe
Q 036061          198 ---EKLGEYDCIFLAALVG-------MSKEEK-----------VKIIKHIRKYMKD--GGVLLVRS  240 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~-------~~~~~k-----------~~il~~l~~~l~p--Gg~lv~r~  240 (284)
                         ..++..|+++.++.+.       ++.++.           ..+.+.+.+.|++  +|.++.-+
T Consensus        76 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is  141 (260)
T d1x1ta1          76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIA  141 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecc
Confidence               1346789998777542       222332           3344556666654  56666544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.20  E-value=0.57  Score=34.98  Aligned_cols=51  Identities=12%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH---------HHHHHHHHHHhcC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA---------ANDVARQIVSSDI  180 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~---------ai~~Ar~~~~~~G  180 (284)
                      ..++++|+.||+|+.|+-......  ..|.+||-+|.++.         .-+..++.+++.|
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~--~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~G   91 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG   91 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             hccCCEEEEECCchHHHHHHHHHH--hhCcceeeeeecccccccccchhhhhhhhhcccccc
Confidence            356899999999987776544433  37999999997544         3345555566666

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.26  Score=41.16  Aligned_cols=76  Identities=21%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++.-|++ .|+.   +..||+   .|++|+..|++++.++...+.++..|.   ++.++.+|+.+..         
T Consensus        10 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~l~~~g~---~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_          10 DGKCAIITGAG-AGIGKEIAITFAT---AGASVVVSDINADAANHVVDEIQQLGG---QAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHT---TTCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEccCCCHHHHHHHHHHH
Confidence            57888888886 3543   334444   899999999999999998888888773   7899999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        83 ~~~~g~iDilvnnAG~   98 (255)
T d1fmca_          83 ISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHcCCCCEeeeCCcC
Confidence             234678998877644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.096  Score=41.63  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc---ccccCCCccE
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ---VKEKLGEYDC  205 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~---~~~~~~~fD~  205 (284)
                      ..+++|+.+|||..+-+ +..+-.......++-++++++..+.+..++++++. .-.......+..+   +...+.++|+
T Consensus        16 l~~k~vlIlGaGGaara-i~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTA-IGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CTTCEEEEECCSHHHHH-HHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-HSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCcHHHHH-HHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-hcCcceEeeecccccchhhhhcccce
Confidence            56789999999943333 22222123345799999999888888877766541 1122233333322   2233457899


Q ss_pred             EEecccccCCh
Q 036061          206 IFLAALVGMSK  216 (284)
Q Consensus       206 V~~aa~v~~~~  216 (284)
                      |+.+.-+||..
T Consensus        94 iIN~Tp~G~~~  104 (182)
T d1vi2a1          94 LTNGTKVGMKP  104 (182)
T ss_dssp             EEECSSTTSTT
T ss_pred             eccccCCcccc
Confidence            99776677653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.08  E-value=0.048  Score=43.92  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=27.8

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      ++||+.||+|+.|+++-+.++  ..|.+|+-+|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La--~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLK--IHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--TTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHH--hCCCCEEEEeCCC
Confidence            479999999998988866554  3789999999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.11  Score=38.76  Aligned_cols=51  Identities=10%  Similarity=0.048  Sum_probs=39.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDIE  181 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G~  181 (284)
                      ..|++|+.||+|..|+-......  ..|.+||-++.        |++..+..++.+++.|.
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv   78 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGV   78 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             hcCCEEEEEcCCccHHHHHHHHh--cCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCC
Confidence            45789999999977765444433  37999999998        57788888888888773

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.92  E-value=0.49  Score=39.18  Aligned_cols=74  Identities=15%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             CEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------c
Q 036061          132 KKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------E  198 (284)
Q Consensus       132 ~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------~  198 (284)
                      +.+|.-|++ -|+   .+..||+   .|++|+..|++++.++...+.++..|.   ++.++.+|+++..          .
T Consensus         3 KValITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~g~---~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           3 EVALVTGAT-SGIGLEIARRLGK---EGLRVFVCARGEEGLRTTLKELREAGV---EADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeecCCHHHHHHHHHHHHH
Confidence            444555765 344   3445555   899999999999999988888888773   7999999998632          2


Q ss_pred             cCCCccEEEecccc
Q 036061          199 KLGEYDCIFLAALV  212 (284)
Q Consensus       199 ~~~~fD~V~~aa~v  212 (284)
                      ..+..|+++.++.+
T Consensus        76 ~~g~iDilVnnAG~   89 (257)
T d2rhca1          76 RYGPVDVLVNNAGR   89 (257)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             HhCCCCEEEecccc
Confidence            35678999877643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.79  E-value=0.031  Score=43.87  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHH
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAA  168 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~a  168 (284)
                      .++||+.||+||.|+++...+.  ..|.+ |+.+|.++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~--~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLA--RLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHH--HTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHH--HCCCCeEEEEEecCcc
Confidence            4789999999999998766555  26774 9999988755

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.31  Score=37.95  Aligned_cols=77  Identities=12%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      .++++||.+|+|..+- |+..|= ...|++|+-+.++++..+.-.+.+...+    .++...-+  +  .....+|+|+.
T Consensus        16 ~~~k~vlIlGaGGaar-ai~~al-~~~g~~i~I~nRt~~ka~~l~~~~~~~~----~~~~~~~~--~--~~~~~~dliIN   85 (170)
T d1nyta1          16 RPGLRILLIGAGGASR-GVLLPL-LSLDCAVTITNRTVSRAEELAKLFAHTG----SIQALSMD--E--LEGHEFDLIIN   85 (170)
T ss_dssp             CTTCEEEEECCSHHHH-HHHHHH-HHTTCEEEEECSSHHHHHHHHHHTGGGS----SEEECCSG--G--GTTCCCSEEEE
T ss_pred             CCCCEEEEECCcHHHH-HHHHHh-cccceEEEeccchHHHHHHHHHHHhhcc----cccccccc--c--ccccccceeec
Confidence            6789999999993333 333332 2357889999999865543333333332    34433222  1  12347999997


Q ss_pred             cccccCC
Q 036061          209 AALVGMS  215 (284)
Q Consensus       209 aa~v~~~  215 (284)
                      +..+||.
T Consensus        86 ~Tp~G~~   92 (170)
T d1nyta1          86 ATSSGIS   92 (170)
T ss_dssp             CCSCGGG
T ss_pred             ccccCcc
Confidence            7767763

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.71  E-value=0.32  Score=40.44  Aligned_cols=74  Identities=22%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             CEE-EEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------
Q 036061          132 KKV-AFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------  197 (284)
Q Consensus       132 ~~V-L~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------  197 (284)
                      +|| |.-|++ .|+.   +..||+   .|++|+..|++++.++...+.+.+.|.   ++.++.+|+++..          
T Consensus         1 KKValITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~g~---~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           1 KKVALVTGAG-QGIGKAIALRLVK---DGFAVAIADYNDATAKAVASEINQAGG---HAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCc-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeCCCHHHHHHHHHHHH
Confidence            355 445765 3443   344555   799999999999999988888888773   7899999998632          


Q ss_pred             ccCCCccEEEecccc
Q 036061          198 EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 ~~~~~fD~V~~aa~v  212 (284)
                      ...+..|+++.++.+
T Consensus        74 ~~~g~iDilVnnAG~   88 (255)
T d1gega_          74 KTLGGFDVIVNNAGV   88 (255)
T ss_dssp             HHTTCCCEEEECCCC
T ss_pred             HHhCCccEEEecccc
Confidence            235789999877643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.71  E-value=0.3  Score=35.65  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             CCCCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDIE  181 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G~  181 (284)
                      ...|++|+.||+|+.|+-.. .++.....+.+||-++.        |+++.+..++.+++.|.
T Consensus        17 ~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV   79 (117)
T d1aoga2          17 PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGI   79 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCc
Confidence            35679999999997776533 22332235678999987        56677788888888773

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.54  E-value=0.4  Score=35.41  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=27.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA  167 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~  167 (284)
                      .++++|+.||+|+.|+-.....+  ..|.+||-++.++.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATAR--TAGVHVSLVETQPR   64 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSS
T ss_pred             hcCCeEEEECcchhHHHHHHHhh--cccceEEEEeeccc
Confidence            56799999999977765333222  37999999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.45  E-value=0.067  Score=40.70  Aligned_cols=37  Identities=22%  Similarity=0.143  Sum_probs=29.6

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      .++||+.||+|+.|+++..-.+...++.+||.||.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3689999999988888755544456778999999876

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.37  E-value=0.23  Score=41.57  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+-   +..||+   .|++|...|++++.++.+.+.+...|.-..++.++.+|+.+..         
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAR---EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence            46777877875 3443   344555   8999999999999999888888877633457999999997632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        80 ~~~~g~iDilvnnAG   94 (264)
T d1spxa_          80 LGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEeecccc
Confidence             13467899887664

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.26  E-value=0.27  Score=36.16  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDI  180 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G  180 (284)
                      ..|++|+.||+|.+|+-......  ..|.+||-+..        |++..+..++.+++.|
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~--~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~G   77 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWA--RLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG   77 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEECCChHHHHHHHHHH--HcCCceEEEEeecccCCcccchhHHHHHHHHHhcC
Confidence            67899999999987765443333  37999999984        6788888888888877

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.18  E-value=0.096  Score=38.87  Aligned_cols=49  Identities=10%  Similarity=0.117  Sum_probs=34.7

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-------HHHHHHHHHHHhcC
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-------AANDVARQIVSSDI  180 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-------~ai~~Ar~~~~~~G  180 (284)
                      .+++|+.||+|+.|+-......  ..|.+||-++.++       ++.+..++.+++.|
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~G   86 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLA--EAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETG   86 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHH--HTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEECCcHHHHHHHHHhh--cccceEEEEeccccccCCCHHHHHHHHHHHHHCC
Confidence            4589999999977765443332  3789999999764       45566666666665

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.17  E-value=0.24  Score=41.55  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+.   +..||+   .|++|+.+|++++.++.+.+.+..    ..++.++.+|+.+..         
T Consensus         5 ~gKvalITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~----~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGA-GGIGETTAKLFVR---YGAKVVIADIADDHGQKVCNNIGS----PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhcC----CCceEEEEccCCCHHHHHHHHHHH
Confidence            57888888876 3443   344555   799999999999887766665543    346889999998632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence             13467899987664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.039  Score=39.20  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=46.5

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ++++|+.+|-|--|+++..+..  ..|++|+++|..+..-..     ..   +...+.++.+...+  ..+..+|.|+.+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~--~~g~~v~~~D~~~~~~~~-----~~---~~~~~~~~~~~~~~--~~~~~~d~vi~S   71 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFL--ARGVTPRVMDTRMTPPGL-----DK---LPEAVERHTGSLND--EWLMAADLIVAS   71 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHH--HTTCCCEEEESSSSCTTG-----GG---SCTTSCEEESBCCH--HHHHHCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHH--HCCCEEEEeeCCcCchhH-----HH---Hhhccceeecccch--hhhccCCEEEEC
Confidence            5789999999966777655444  379999999986542111     11   22345555554322  223468999998


Q ss_pred             cccc
Q 036061          210 ALVG  213 (284)
Q Consensus       210 a~v~  213 (284)
                      ..+.
T Consensus        72 PGi~   75 (93)
T d2jfga1          72 PGIA   75 (93)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8873

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.86  E-value=0.41  Score=39.69  Aligned_cols=75  Identities=11%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+.   +..||+   .|++|+..|++++.++.+.+.+..    ..++.++.+|+.+..         
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVE---EGAKVMITGRHSDVGEKAAKSVGT----PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhCC----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56788888875 3543   445565   899999999999988777765532    358999999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        77 ~~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHhCCceEEEecccc
Confidence             234678998877643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.86  E-value=1.2  Score=34.97  Aligned_cols=108  Identities=16%  Similarity=0.115  Sum_probs=60.9

Q ss_pred             CCCCEEEEecc-CCChhHHHHH-HhhcCCC----cEEEEEeCChHH---HHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061          129 VNPKKVAFVGS-GPMPLTSIVM-AKNHLKS----THFDNFDIDEAA---NDVARQIVSSDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       129 ~~~~~VL~IGs-G~lp~tai~L-A~~~~~g----~~V~~iDid~~a---i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      +++.||..+|+ |.+|++..++ ++....|    ..++-+|+++..   -..+.++-..... ..+-...+.|.   ...
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~-~~~~~~~~~~~---~~~   97 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYP-LLREVSIGIDP---YEV   97 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCH---HHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccc-cccCccccccc---hhh
Confidence            57789999994 9888887754 3321222    367778887643   2333333333221 12223333333   234


Q ss_pred             CCCccEEEecccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061          200 LGEYDCIFLAALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ...-|+|++.+..    ||+..+-        .++.+.+.++-++++.+++-+
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            5678999877754    4444332        445556666656678676554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.80  E-value=0.56  Score=39.07  Aligned_cols=73  Identities=14%  Similarity=0.114  Sum_probs=52.6

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+-   +..|++   .|++|+..|++++.++.   .++.+|   .++.++.+|+.+..         
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~---~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGA-RGLGAEAARQAVA---AGARVVLADVLDEEGAA---TARELG---DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHH---HHHTTG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHH---HHHHhC---CceEEEEcccCCHHHHHHHHHHH
Confidence            57899999987 3543   455555   89999999999976654   444655   48999999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        74 ~~~~g~iDilVnnAg~   89 (254)
T d1hdca_          74 REEFGSVDGLVNNAGI   89 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCccEEEecCcc
Confidence             124678988877644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.65  E-value=0.49  Score=34.30  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=38.1

Q ss_pred             CCCCEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCC--------hHHHHHHHHHHHhcC
Q 036061          129 VNPKKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDID--------EAANDVARQIVSSDI  180 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid--------~~ai~~Ar~~~~~~G  180 (284)
                      ..|++|+.||+|+.|+-... +++....|.+|+-++.+        ++..+..++.+++.|
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~G   76 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANG   76 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCc
Confidence            56799999999977665332 23323458999999874        567788888888877

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.63  E-value=0.26  Score=37.53  Aligned_cols=44  Identities=14%  Similarity=0.110  Sum_probs=31.5

Q ss_pred             CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 036061          131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI  180 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G  180 (284)
                      .++||.||+|-+|... -.|++   .|.+|+.+|++.+..+   ++.+..+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~---~g~~V~v~dr~~~~a~---~l~~~~~   46 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD---SGIKVTVACRTLESAK---KLSAGVQ   46 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT---TTCEEEEEESCHHHHH---HHHTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHh---CCCEEEEEECChHHHH---HHHhccc
Confidence            5799999999776543 33443   6899999999998544   4444544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=1.6  Score=35.73  Aligned_cols=73  Identities=15%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             CCCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------cc
Q 036061          129 VNPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------EK  199 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~~  199 (284)
                      -.++++|..|++ .|+.   +..|++   .|++|+.+|++++.++...   ++.+    .+.+++.|+.+..      ..
T Consensus         5 L~GK~~lITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~l~~~~---~~~~----~~~~~~~Dv~d~~~v~~~~~~   73 (244)
T d1pr9a_           5 LAGRRVLVTGAG-KGIGRGTVQALHA---TGARVVAVSRTQADLDSLV---RECP----GIEPVCVDLGDWEATERALGS   73 (244)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHH---HHST----TCEEEECCTTCHHHHHHHHTT
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHH---HhcC----CCeEEEEeCCCHHHHHHHHHH
Confidence            367899999987 3543   344555   8999999999988765443   3443    4788899987632      24


Q ss_pred             CCCccEEEecccc
Q 036061          200 LGEYDCIFLAALV  212 (284)
Q Consensus       200 ~~~fD~V~~aa~v  212 (284)
                      .++.|+++.++.+
T Consensus        74 ~g~iDilVnnAg~   86 (244)
T d1pr9a_          74 VGPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             hCCceEEEecccc
Confidence            5789999877643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.57  E-value=0.7  Score=38.29  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++.-|++ .|+   .+..||+   .|++|+..|++++.++...   +++|   .+..++.+|+.+..         
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~~~~~~~~~~~---~~~~---~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           5 QGKVALVTGGA-SGVGLEVVKLLLG---EGAKVAFSDINEAAGQQLA---AELG---ERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHH---HHHC---TTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHH---HHhC---CCeEEEEeecCCHHHHHHHHHHH
Confidence            56788888875 354   3444555   8999999999998776544   3555   47888999988632         


Q ss_pred             -ccCCCccEEEeccccc-------CChHHH-----------HHHHHHHHhhcC-CCcEEEEEe
Q 036061          198 -EKLGEYDCIFLAALVG-------MSKEEK-----------VKIIKHIRKYMK-DGGVLLVRS  240 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v~-------~~~~~k-----------~~il~~l~~~l~-pGg~lv~r~  240 (284)
                       ...+..|+++.++.+.       ++.++.           ..+.+.+.+.|+ .||.++.-+
T Consensus        75 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          75 QRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             HHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence             1346789998777441       122332           334566677775 467777654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.13  Score=35.69  Aligned_cols=47  Identities=9%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHH
Q 036061          127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQI  175 (284)
Q Consensus       127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~  175 (284)
                      ..+++.+||..|. |..|..++.+|+  ..|++|+++-.|++-.++.+++
T Consensus        28 ~~~~~~~vlI~gasGgVG~~aiQlak--~~G~~Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2          28 VRPQDGEIVVTGASGGVGSTAVALLH--KLGYQVVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHH--HTTCCEEEEESCGGGHHHHHHH
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHH--HcCCeEEEEECCHHHHHHHHHC
Confidence            3467788988775 677888999998  4789999999999998888764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=90.30  E-value=0.62  Score=38.41  Aligned_cols=109  Identities=16%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             CCCCEEEEecc-C--CChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-------
Q 036061          129 VNPKKVAFVGS-G--PMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-------  197 (284)
Q Consensus       129 ~~~~~VL~IGs-G--~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-------  197 (284)
                      -+++++|..|+ |  -+|. .|..|++   .|++|+..|++++..+.++++....+    ...+...|+.+-.       
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~---~Ga~V~i~~r~~~~~~~~~~l~~~~~----~~~~~~~d~~~~~~~~~~~~   75 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFN---QGATLAFTYLNESLEKRVRPIAQELN----SPYVYELDVSKEEHFKSLYN   75 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHT---TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHhhCC----ceeEeeecccchhhHHHHHH
Confidence            36899999994 2  1444 3444554   89999999999888788877776644    4566777776422       


Q ss_pred             ---ccCCCccEEEecccccCCh-------H---------------HHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061          198 ---EKLGEYDCIFLAALVGMSK-------E---------------EKVKIIKHIRKYMKDGGVLLVRSAKGA  244 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~~~~-------~---------------~k~~il~~l~~~l~pGg~lv~r~~~gl  244 (284)
                         ...+..|+++.++......       .               -.........+..++|+.+++.+..+.
T Consensus        76 ~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~  147 (274)
T d2pd4a1          76 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGS  147 (274)
T ss_dssp             HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG
T ss_pred             HHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccc
Confidence               2346788887665321100       0               023455566667788887777665443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.25  E-value=0.28  Score=37.93  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             CEEEEeccCCChhHH-H-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          132 KKVAFVGSGPMPLTS-I-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .||..||||.+|-.. + .+.  ..++..++.+|.+++..+..   .+..+. ..    ...|..++..  .+.|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~--~~~~~~~~~~d~~~~~~~~~---~~~~~~-~~----~~~~~~~ll~--~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLA--QWPDIELVLCTRNPKVLGTL---ATRYRV-SA----TCTDYRDVLQ--YGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHT--TSTTEEEEEECSCHHHHHHH---HHHTTC-CC----CCSSTTGGGG--GCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHH--hCCCcEEEEEECCHHHHHHH---HHhccc-cc----ccccHHHhcc--cccceeccc
Confidence            489999999654321 1 222  36788989999998765544   445552 11    2356555543  368999876


Q ss_pred             cc
Q 036061          210 AL  211 (284)
Q Consensus       210 a~  211 (284)
                      ..
T Consensus        70 tp   71 (167)
T d1xeaa1          70 AA   71 (167)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.23  E-value=1.3  Score=32.42  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC---------hHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID---------EAANDVARQIVSSDIEFEKRMKFVTCD  192 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid---------~~ai~~Ar~~~~~~G~l~~~I~f~~~D  192 (284)
                      ...+++|+.||+|++|+-......  ..|.+||-++.+         +++.+..++.+++.|     |+++.+.
T Consensus        27 ~~~~k~vvViGgG~iG~E~A~~l~--~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g-----v~~~~~~   93 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYIGIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-----ITIATGE   93 (123)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT-----EEEEESC
T ss_pred             ccCCCEEEEECChHHHHHHHHHhh--ccceEEEEEEecCcccccccchhhHHHHHHHhhcCC-----eEEEeCc
Confidence            356789999999987776544333  378999999765         444555556555554     5555543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.05  E-value=0.18  Score=40.42  Aligned_cols=103  Identities=14%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH---HhcCC--CCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV---SSDIE--FEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~---~~~G~--l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      .||+.||+|..|.+.-.+..  ..|.+|+..++|++.++.-.+.=   .-++.  +.+++++ +.|..+   .....|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La--~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~---a~~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLS--KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEK---AYNGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHH--TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHH---HHTTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHH--HcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhh---ccCCCCEE
Confidence            47999999988765332222  36778999999998776443321   11110  3456664 345433   23457999


Q ss_pred             EecccccCChHHHHHHHHHHHhh----cCCCcEEEEEecCcc
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKY----MKDGGVLLVRSAKGA  244 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~----l~pGg~lv~r~~~gl  244 (284)
                      +++.-.    .--..+++++...    +.++...++....|+
T Consensus        82 iiavPs----~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi  119 (189)
T d1n1ea2          82 LFVIPT----QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI  119 (189)
T ss_dssp             EECSCH----HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred             EEcCcH----HHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence            876432    3344566666543    223343344444664

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.99  E-value=2  Score=35.01  Aligned_cols=103  Identities=17%  Similarity=0.219  Sum_probs=69.3

Q ss_pred             CCCCEEEEeccCCChhHH---HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          129 VNPKKVAFVGSGPMPLTS---IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~ta---i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      -.++.+|..|++ .|+..   ..|++   .|++|+..++|.+.++   +..+.+|   .++.++.+|+.+..        
T Consensus         3 l~gK~alItGas-~GIG~aia~~l~~---~G~~V~~~~r~~~~~~---~~~~~~~---~~~~~~~~Dls~~~~i~~~~~~   72 (241)
T d2a4ka1           3 LSGKTILVTGAA-SGIGRAALDLFAR---EGASLVAVDREERLLA---EAVAALE---AEAIAVVADVSDPKAVEAVFAE   72 (241)
T ss_dssp             TTTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHH---HHHHTCC---SSEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHH---HHHHHcC---CceEEEEecCCCHHHHHHHHHH
Confidence            367889999987 35543   33444   8999999999998664   4455665   58899999987632        


Q ss_pred             --ccCCCccEEEecccccC-------ChHHH-----------HHHHHHHHhhcCCCcEEEEEec
Q 036061          198 --EKLGEYDCIFLAALVGM-------SKEEK-----------VKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v~~-------~~~~k-----------~~il~~l~~~l~pGg~lv~r~~  241 (284)
                        ...+..|+++.++....       +.++.           ..+.+.+.++|+.++.+++-+.
T Consensus        73 i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          73 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence              12367898887764311       11221           4456777888999888777653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.72  E-value=0.61  Score=38.81  Aligned_cols=76  Identities=12%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++++|.-|++ .|+   .+..||+   .|++|+.+|++++.++.+.+.+...+   .++.++.+|+.+..         
T Consensus         7 kgK~alVTGas-~GIG~aiA~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGT-KGIGHAIVEEFAG---FGAVIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEeccCCCHHHHHHHHHHH
Confidence            57899999986 455   4555666   89999999999999988888887766   37999999997532         


Q ss_pred             -ccC-CCccEEEecccc
Q 036061          198 -EKL-GEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~-~~fD~V~~aa~v  212 (284)
                       ... +..|+++.++.+
T Consensus        80 ~~~~~g~idilvnnAG~   96 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGA   96 (259)
T ss_dssp             HHHHTTCCSEEEEECCC
T ss_pred             HHHhCCCcccccccccc
Confidence             122 468999877643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=0.92  Score=36.91  Aligned_cols=106  Identities=12%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             CCCCEEEEeccCC-Chh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-------
Q 036061          129 VNPKKVAFVGSGP-MPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~-lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-------  197 (284)
                      -.+++||.-|++. +|+   .|..|++   .|++|+..|++++..+.+.+.....|    +..+...|..+..       
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   75 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLG----SDIVLQCDVAEDASIDTMFA   75 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcC----CcceeecccchHHHHHHHHH
Confidence            3678999988642 243   4566776   89999999999998888888877766    3455556654421       


Q ss_pred             ---ccCCCccEEEecccccCChH------H-----------------HHHHHHHHHhhcCCCcEEEEEec
Q 036061          198 ---EKLGEYDCIFLAALVGMSKE------E-----------------KVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       198 ---~~~~~fD~V~~aa~v~~~~~------~-----------------k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         ...+..|.++.++.......      +                 -....+.+...+++|+.++.-+.
T Consensus        76 ~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss  145 (258)
T d1qsga_          76 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  145 (258)
T ss_dssp             HHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence               23356788775553311100      1                 14455667778888888777663

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.68  E-value=0.094  Score=42.08  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             CCEEEEeccCCChhHHHHH-Hhh----cCCCcEEEEEeCCh
Q 036061          131 PKKVAFVGSGPMPLTSIVM-AKN----HLKSTHFDNFDIDE  166 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~L-A~~----~~~g~~V~~iDid~  166 (284)
                      |.||+.||+||-|++|... +++    ...+.+||.+|..+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            6799999999999887754 431    13557899999886

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.55  E-value=0.085  Score=43.14  Aligned_cols=38  Identities=21%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      ..+++|+.||+||.|+++...++  ..|..|+-+|.+++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~--~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLM--ESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHH--HhccceeeEeecccc
Confidence            57799999999999999877544  378999999987754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.8  Score=37.67  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++.-|++ .|+.   +..|++   .|++|+..|++++.++...+   .++   .+..++.+|+++..         
T Consensus         3 ~gK~alITGas-~GIG~a~a~~l~~---~G~~Vv~~~r~~~~l~~~~~---~~~---~~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGAS-RGIGRAIAETLAA---RGAKVIGTATSENGAQAISD---YLG---ANGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH---HHG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH---HhC---CCCcEEEEEecCHHHhhhhhhhh
Confidence            46778888876 3543   444555   89999999999987765444   444   36788899998632         


Q ss_pred             -ccCCCccEEEecccc-------cCChHHH-----------HHHHHHHHhhc--CCCcEEEEEe
Q 036061          198 -EKLGEYDCIFLAALV-------GMSKEEK-----------VKIIKHIRKYM--KDGGVLLVRS  240 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v-------~~~~~~k-----------~~il~~l~~~l--~pGg~lv~r~  240 (284)
                       ...+..|+++.++.+       ..+.++.           ..+.+.+.++|  +.+|.++.-+
T Consensus        73 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          73 RAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             HHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             hcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence             235678998877643       1122222           33445566666  3467776655

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.44  E-value=2.2  Score=34.74  Aligned_cols=72  Identities=11%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------ccC
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------EKL  200 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~~~  200 (284)
                      .++++|.-|++ .|+   .+..|++   .|++|+.+|++++.++..   .++.+    .+.++++|+.+..      ...
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~---~~~~~----~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           4 SGLRALVTGAG-KGIGRDTVKALHA---SGAKVVAVTRTNSDLVSL---AKECP----GIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHHST----TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHH---HHhcC----CCeEEEEeCCCHHHHHHHHHHc
Confidence            57899999986 354   3445555   899999999998765543   33443    5788899987632      245


Q ss_pred             CCccEEEecccc
Q 036061          201 GEYDCIFLAALV  212 (284)
Q Consensus       201 ~~fD~V~~aa~v  212 (284)
                      +..|+++.++.+
T Consensus        73 g~iDilVnnAg~   84 (242)
T d1cyda_          73 GPVDLLVNNAAL   84 (242)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            678999877643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.28  E-value=0.73  Score=38.12  Aligned_cols=76  Identities=14%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++++|.-|++ .|+   .+..||+   .|++|+..|++++.++. +.++.+..|   .++.++.+|+.+..        
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAA---AGANVAVIYRSAADAVEVTEKVGKEFG---VKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHH---TTEEEEEEESSCTTHHHHHHHHHHHHT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHH
Confidence            56788888886 355   3455665   89999999999876654 445555666   47899999998632        


Q ss_pred             --ccCCCccEEEecccc
Q 036061          198 --EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v  212 (284)
                        ...+..|+++.++.+
T Consensus        81 ~~~~~g~iDilVnnAg~   97 (260)
T d1h5qa_          81 IDADLGPISGLIANAGV   97 (260)
T ss_dssp             HHHHSCSEEEEEECCCC
T ss_pred             HHHHhCCCcEecccccc
Confidence              235678988877643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.21  E-value=0.1  Score=42.09  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=28.5

Q ss_pred             EEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChH
Q 036061          133 KVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEA  167 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~  167 (284)
                      ||+.||+||-|+|+.. |++ ...|.+||-+|..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~-~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLK-HHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHh-cCCCCeEEEEeCCCC
Confidence            8999999999999876 444 457899999999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=89.13  E-value=0.098  Score=42.52  Aligned_cols=50  Identities=14%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH----------HHHHHHHHHhcC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA----------NDVARQIVSSDI  180 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a----------i~~Ar~~~~~~G  180 (284)
                      ....||+.||+||.|+++-....  ..|..|+.+|.+++-          ...+.+.++++|
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~--~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g   61 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLR--DAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQG   61 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTT
T ss_pred             CCCCcEEEECcCHHHHHHHHHHH--HCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcC
Confidence            35689999999988877655443  279999999986541          245566777777

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.12  E-value=0.37  Score=35.58  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=40.7

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC-------hHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID-------EAANDVARQIVSSDIEFEKRMKFVTC  191 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid-------~~ai~~Ar~~~~~~G~l~~~I~f~~~  191 (284)
                      ...|++++.||+|++|+-.....+  ..|.+||-++.+       +++.+..++.+++.|     |+|+.+
T Consensus        17 ~~~P~~vvIIGgG~iG~E~A~~l~--~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~G-----v~i~~~   80 (122)
T d1h6va2          17 PYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHG-----IKFIRQ   80 (122)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTT-----EEEEES
T ss_pred             ccCCCeEEEECCCccHHHHHHHHh--hcCCeEEEEEechhhccCCHHHHHHHHHHHHHCC-----CEEEEC
Confidence            357899999999977765444333  378999999765       457777888887776     455544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.89  E-value=1.3  Score=34.49  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=45.9

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      ..++++|+.+|+|..+-+.+.-..  ..+.+|+-+.++++..+.-.+.+...+    .+....-|.    ..+..+|+|+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~--~~~~~i~I~nR~~~~a~~l~~~~~~~~----~~~~~~~~~----~~~~~~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLL--QAQQNIVLANRTFSKTKELAERFQPYG----NIQAVSMDS----IPLQTYDLVI   84 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHH--HTTCEEEEEESSHHHHHHHHHHHGGGS----CEEEEEGGG----CCCSCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHc--ccCceeeeccchHHHHHHHHHHHhhcc----ccchhhhcc----ccccccceee
Confidence            357889999999944433332212  256789999999866444444333322    344433332    2346799999


Q ss_pred             ecccccCCh
Q 036061          208 LAALVGMSK  216 (284)
Q Consensus       208 ~aa~v~~~~  216 (284)
                      .+.-+||..
T Consensus        85 N~tp~g~~~   93 (171)
T d1p77a1          85 NATSAGLSG   93 (171)
T ss_dssp             ECCCC----
T ss_pred             ecccccccc
Confidence            887777743

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.87  E-value=0.85  Score=38.11  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQ-IVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++++|.-|++ .|+   .+..|++   .|++|+.+|++++.++.+.+ +..+.|   .++.++.+|+.+..        
T Consensus        24 ~gK~alITGas-~GIG~aiA~~la~---~Ga~Vii~~r~~~~l~~~~~~l~~~~g---~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          24 QGKVAFITGGG-TGLGKGMTTLLSS---LGAQCVIASRKMDVLKATAEQISSQTG---NKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhcC---CceEEEEecccChHHHHHHhhh
Confidence            56888888875 353   3445555   89999999999988766554 445555   47899999997632        


Q ss_pred             --ccCCCccEEEeccc
Q 036061          198 --EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 --~~~~~fD~V~~aa~  211 (284)
                        ...+..|+++.++.
T Consensus        97 ~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          97 LIKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHHTCSCSEEEECCC
T ss_pred             hhhhccccchhhhhhh
Confidence              23467899887664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.86  E-value=0.65  Score=33.58  Aligned_cols=52  Identities=8%  Similarity=-0.057  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh--------HHHHHHHHHHHhcC
Q 036061          127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE--------AANDVARQIVSSDI  180 (284)
Q Consensus       127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~--------~ai~~Ar~~~~~~G  180 (284)
                      ...++++|+.||+|..|+-......  ..|.+|+.++..+        +..+..++.+++.|
T Consensus        18 ~~~~~~~vvVvGgG~ig~E~A~~l~--~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~g   77 (121)
T d1mo9a2          18 DYEPGSTVVVVGGSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQG   77 (121)
T ss_dssp             CSCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTT
T ss_pred             hhCCCCEEEEECCCHHHHHHHHHHH--hcchhheEeeccchhhcccccchhhhhhhhhhccc
Confidence            3467899999999977664333322  3789999999654        45667777777766

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.79  E-value=0.8  Score=37.98  Aligned_cols=75  Identities=8%  Similarity=0.017  Sum_probs=57.6

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.+|.-|++ .|+-   +..|++   .|++|+..|++++.++.+.+.+...|   .++.++.+|+.+..         
T Consensus         7 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           7 EGCTALVTGGS-RGIGYGIVEELAS---LGASVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeeCCCHHHHHHHHHHH
Confidence            57899999987 3553   455555   89999999999999998888888777   37889999997622         


Q ss_pred             -ccCC-CccEEEeccc
Q 036061          198 -EKLG-EYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~-~fD~V~~aa~  211 (284)
                       ...+ ..|+++.++.
T Consensus        80 ~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          80 ANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHTTTCCCEEEECCC
T ss_pred             HHHhCCCceEEEECCc
Confidence             2334 6899987764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.14  E-value=0.15  Score=40.84  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+++|..||.|.+|-....+++  ..|++|.++|.++.           .+. .   .+ ..+.   ..-+...|+|+++
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~--~~g~~v~~~d~~~~-----------~~~-~---~~-~~~l---~ell~~sDiv~~~   99 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILA--ALGAQVRGFSRTPK-----------EGP-W---RF-TNSL---EEALREARAAVCA   99 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHH--HTTCEEEEECSSCC-----------CSS-S---CC-BSCS---HHHHTTCSEEEEC
T ss_pred             cCceEEEeccccccccceeeee--cccccccccccccc-----------ccc-e---ee-eech---hhhhhccchhhcc
Confidence            5789999999998866555655  47999999998853           121 1   11 1222   2334578999876


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      .-.  +++.+.=+=++..+.||||++|+--
T Consensus       100 ~pl--~~~t~~li~~~~l~~mk~~ailIN~  127 (181)
T d1qp8a1         100 LPL--NKHTRGLVKYQHLALMAEDAVFVNV  127 (181)
T ss_dssp             CCC--STTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             ccc--ccccccccccceeeeccccceEEec
Confidence            432  2233322224667789999988654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.09  E-value=0.86  Score=37.80  Aligned_cols=75  Identities=12%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      ++++||..|+. .|+.   +..|++   .|++|+.+|++++.++.+.+.++..|.   .+.++.+|+.+..         
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~---~G~~V~i~~r~~~~l~~~~~~~~~~~~---~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGS-KGIGYAIVEELAG---LGARVYTCSRNEKELDECLEIWREKGL---NVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC---CceEEEeecCCHHHHHHHHHHH
Confidence            67899999986 3542   344555   899999999999999999998888773   7889999998633         


Q ss_pred             -ccC-CCccEEEeccc
Q 036061          198 -EKL-GEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~-~~fD~V~~aa~  211 (284)
                       ... +..|+++.++.
T Consensus        78 ~~~~~g~idilinnag   93 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHTTSCCCEEEECCC
T ss_pred             HHHhCCCcEEEecccc
Confidence             123 35788886664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.97  E-value=1.9  Score=32.71  Aligned_cols=109  Identities=14%  Similarity=0.127  Sum_probs=56.1

Q ss_pred             CCCCEEEEecc-CCChhHHHHHHh-hcCCC----cEEEEEeCChHH--HHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061          129 VNPKKVAFVGS-GPMPLTSIVMAK-NHLKS----THFDNFDIDEAA--NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL  200 (284)
Q Consensus       129 ~~~~~VL~IGs-G~lp~tai~LA~-~~~~g----~~V~~iDid~~a--i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~  200 (284)
                      +.|.||.-||+ |..|.+..++-. ....+    .....+|.+...  .+...-......  ....+-+..... ....+
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~   78 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA--FPLLAGLEATDD-PKVAF   78 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTEEEEEEESC-HHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc--cccccccccCCc-hhhhc
Confidence            56889999995 988877665432 11112    123444444333  222222222222  122322222211 12345


Q ss_pred             CCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061          201 GEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       201 ~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      ..-|+|++.+..    +++..+        -.++.+.+.++-.+++.+++-+
T Consensus        79 ~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            678999988754    444322        1445556666656788776644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.97  E-value=0.25  Score=36.53  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=38.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcCC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDIE  181 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G~  181 (284)
                      ..|++++.||+|..|+-......  ..|.+||-++.        |+++.+...+.+++.|.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~--~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI   81 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM   81 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred             ccCCeEEEEccchHHHHHHHHHH--hcCCeEEEEEEccccCchhhhcchhhhhhhhhcccc
Confidence            67899999999966654333332  37999999976        57888888888888884

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.81  E-value=0.78  Score=34.89  Aligned_cols=88  Identities=19%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             CEEEEeccCCChhHHHHHHhhcC-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHL-KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~-~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      .||-+||.|.+|..   ||++.. .|..++..|..+.+.+.+    +..+.     .   .+..+   ...+.|++++..
T Consensus         1 ekIg~IGlG~MG~~---ma~~L~~~g~~~~~~~~~~~~~~~~----~~~~~-----~---~~~~~---~~~~~~~~i~~~   62 (156)
T d2cvza2           1 EKVAFIGLGAMGYP---MAGHLARRFPTLVWNRTFEKALRHQ----EEFGS-----E---AVPLE---RVAEARVIFTCL   62 (156)
T ss_dssp             CCEEEECCSTTHHH---HHHHHHTTSCEEEECSSTHHHHHHH----HHHCC-----E---ECCGG---GGGGCSEEEECC
T ss_pred             CeEEEEeHHHHHHH---HHHHHHhCCCEEEEeCCHHHHHHHH----HHcCC-----c---ccccc---cccceeEEEecc
Confidence            37999999998854   555443 344554444444443332    23331     0   11111   122457666543


Q ss_pred             cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061          211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS  240 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~  240 (284)
                      .   +.++-......+...+++|..++-.+
T Consensus        63 ~---~~~~v~~~~~~l~~~~~~~~~iid~s   89 (156)
T d2cvza2          63 P---TTREVYEVAEALYPYLREGTYWVDAT   89 (156)
T ss_dssp             S---SHHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred             c---chhhhhhhhccccccccccccccccc
Confidence            2   12445567788888999888887655

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.79  E-value=1.6  Score=35.69  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             CEE-EEeccCCChhH---HHHHHhhcCCCcE-------EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---
Q 036061          132 KKV-AFVGSGPMPLT---SIVMAKNHLKSTH-------FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---  197 (284)
Q Consensus       132 ~~V-L~IGsG~lp~t---ai~LA~~~~~g~~-------V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---  197 (284)
                      ++| |.-|++ -|+.   +..||+   .|++       |+..+++++.++...+.+...|.   ++.++.+|+++..   
T Consensus         1 K~VvlITGas-~GIG~aia~~la~---~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dvt~~~~v~   73 (240)
T d2bd0a1           1 KHILLITGAG-KGIGRAIALEFAR---AARHHPDFEPVLVLSSRTAADLEKISLECRAEGA---LTDTITADISDMADVR   73 (240)
T ss_dssp             CEEEEEETTT-SHHHHHHHHHHHH---HTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC---EEEEEECCTTSHHHHH
T ss_pred             CCEEEEccCC-CHHHHHHHHHHHH---hCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC---cEEEEEecCCCHHHHH
Confidence            354 445765 3553   344555   5655       99999999999988888888773   7899999998732   


Q ss_pred             -------ccCCCccEEEeccccc-------CChHHH-----------HHHHHHHHhhcC--CCcEEEEEe
Q 036061          198 -------EKLGEYDCIFLAALVG-------MSKEEK-----------VKIIKHIRKYMK--DGGVLLVRS  240 (284)
Q Consensus       198 -------~~~~~fD~V~~aa~v~-------~~~~~k-----------~~il~~l~~~l~--pGg~lv~r~  240 (284)
                             ...+..|+++.++.+.       ++.++.           ..+.+.+.++|+  .+|.++.-+
T Consensus        74 ~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is  143 (240)
T d2bd0a1          74 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFIT  143 (240)
T ss_dssp             HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence                   2356799998776541       233333           334455666664  466666544

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.43  Score=35.87  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      ..++||.|||||.-.         ..++.+   |.   +.-.|-+-+++.|.   ++-.+..+-..+..+..--|-+++.
T Consensus         3 ~~kkvlViGsGp~rI---------Gq~~Ef---Dy---~~~~a~~aLk~~g~---~~IliN~NPeTVstd~d~aD~lYfe   64 (121)
T d1a9xa4           3 DREKIMVLGGGPNRI---------GQGIEF---DY---CCVHASLALREDGY---ETIMVNCNPETVSTDYDTSDRLYFE   64 (121)
T ss_dssp             SSCEEEEECCCSCBT---------TBCHHH---HH---HHHHHHHHHHHTTC---EEEEECCCTTSSTTSTTSSSEEECC
T ss_pred             CCCEEEEECCCcCcc---------cccchh---hH---HHHHHHHHHHhcCC---eEEEEecChhhhhcChhhcCceEEc
Confidence            467999999998521         233332   32   23344445567784   6667777877777766667888887


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .+-       .+.+.++.+.=+|.|+++-
T Consensus        65 plt-------~e~v~~Ii~~E~p~~ii~~   86 (121)
T d1a9xa4          65 PVT-------LEDVLEIVRIEKPKGVIVQ   86 (121)
T ss_dssp             CCS-------HHHHHHHHHHHCCSEEECS
T ss_pred             cCC-------HHHHHHHHHHhCCCEEEee
Confidence            652       2345566667799998754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.00  E-value=0.7  Score=37.25  Aligned_cols=46  Identities=22%  Similarity=0.124  Sum_probs=35.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS  177 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~  177 (284)
                      ..++..|||-=+|. |.|++. |.  ..|-+.+|+|+|++.++.|++.++
T Consensus       210 s~~gd~VlDpF~GS-GTT~~a-a~--~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGS-GTTAIV-AK--KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTT-CHHHHH-HH--HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCc-hHHHHH-HH--HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            47889999876664 345443 33  478899999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.94  E-value=0.21  Score=39.52  Aligned_cols=98  Identities=13%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeC--ChHHHHHHHHHH--HhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061          132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDI--DEAANDVARQIV--SSDIEFEKRMKFVTCDIMQVKEKLGEYDCI  206 (284)
Q Consensus       132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDi--d~~ai~~Ar~~~--~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V  206 (284)
                      ++|..||+|.+|.+- ..|++   -|.+|+-+..  +++.++.-.+.-  ...+.-.........  .+........|+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~---~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ad~I   75 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP--EQLEKCLENAEVV   75 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG--GGHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc--ccHHHHHhccchh
Confidence            589999999877642 23343   4667877755  444332221110  011100011222111  1122234568999


Q ss_pred             EecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +++.-.    ..-..+++++...++++.++++
T Consensus        76 i~avps----~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGVST----DGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECSCG----GGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hcccch----hhhHHHHHhhccccccceeccc
Confidence            876432    5567899999999988755544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.86  Score=33.99  Aligned_cols=82  Identities=17%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             CCCEEEEeccCCChhH-HHHHHhh-cCCCcEEEEEeC---------ChHHHHHHHHHHHhcCC---CCCCeEEEEeccc-
Q 036061          130 NPKKVAFVGSGPMPLT-SIVMAKN-HLKSTHFDNFDI---------DEAANDVARQIVSSDIE---FEKRMKFVTCDIM-  194 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t-ai~LA~~-~~~g~~V~~iDi---------d~~ai~~Ar~~~~~~G~---l~~~I~f~~~D~~-  194 (284)
                      .+++|+.||+|+.|+- |..|++. ...|.+|+-++.         +++..+..++.+++.|.   +..+++-+..|-. 
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~  115 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK  115 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCE
Confidence            4689999999976643 2222221 125788998865         44455667777777763   2233433333310 


Q ss_pred             -cccccCC---CccEEEeccc
Q 036061          195 -QVKEKLG---EYDCIFLAAL  211 (284)
Q Consensus       195 -~~~~~~~---~fD~V~~aa~  211 (284)
                       .+....+   .+|+|+.+..
T Consensus       116 ~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         116 LLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEEETTSCEEEESEEEECCC
T ss_pred             EEEEECCCCEEECCEEEEeec
Confidence             1122222   4788876643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.94  E-value=0.83  Score=34.47  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ...++||.|||||.-         ...+..+   |.   +.-.|-+.+++.|.   ++-.+..+...+..+..--|.+|+
T Consensus         5 ~~~kkvlilGsGp~~---------IGq~~Ef---Dy---~~~~a~~alke~g~---~~iliN~NP~TVstd~d~aD~lYf   66 (127)
T d1a9xa3           5 TDIKSILILGAGPIV---------IGQACEF---DY---SGAQACKALREEGY---RVINVNSNPATIMTDPEMADATYI   66 (127)
T ss_dssp             SSCCEEEEECCCSCB---------TTBCTHH---HH---HHHHHHHHHHHHTC---EEEEECSCTTCGGGCGGGSSEEEC
T ss_pred             CCCCEEEEECCCcCc---------ccccchh---HH---HHHHHHHHHHHcCC---eEEEecCchHhhhcChhhcceeee
Confidence            456899999999852         1233333   32   33444455667884   567777777776666555788888


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ..+-       .+.+.++.+.=+|.|++..
T Consensus        67 ePlt-------~e~v~~Ii~~E~pd~il~~   89 (127)
T d1a9xa3          67 EPIH-------WEVVRKIIEKERPDAVLPT   89 (127)
T ss_dssp             SCCC-------HHHHHHHHHHHCCSEEECS
T ss_pred             ecCC-------HHHHHHHHHHhCcCCeEEE
Confidence            7652       2345566666799998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=86.55  E-value=0.16  Score=40.73  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=26.4

Q ss_pred             CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      ++|+.||+|+.|+++-+...  ..|.+|+-+|-++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~--~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLR--SRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHH--TTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHH--hCCCCEEEEecCC
Confidence            47999999988888776554  3788999999764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.55  E-value=2.6  Score=32.35  Aligned_cols=98  Identities=20%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             CCCEEEEeccCC-ChhHHHHHHhhcCCCcEEEEE-----eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061          130 NPKKVAFVGSGP-MPLTSIVMAKNHLKSTHFDNF-----DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY  203 (284)
Q Consensus       130 ~~~~VL~IGsG~-lp~tai~LA~~~~~g~~V~~i-----Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f  203 (284)
                      .+.+|++||.|. ..-|-+.++.  ..|.+|+.+     ..+++.++++++.....+.   .+++. -|..   ......
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~--~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~d~~---ea~~~a   73 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGT--KLGADVVVATPEGYEPDEKVIKWAEQNAAESGG---SFELL-HDPV---KAVKDA   73 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHH--HTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC---EEEEE-SCHH---HHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHH--HcCCeEEEecccccCCChHHHHHHHHhhhcccc---eEEEe-cCHH---HHhhhc
Confidence            578999999984 2233334444  358999877     7889999999998887663   44443 3332   234568


Q ss_pred             cEEEecccccC----ChHHHHHHH------HHHHhhcCCCcEE
Q 036061          204 DCIFLAALVGM----SKEEKVKII------KHIRKYMKDGGVL  236 (284)
Q Consensus       204 D~V~~aa~v~~----~~~~k~~il------~~l~~~l~pGg~l  236 (284)
                      |+|+......+    ..+.+.+.+      ......++|+++|
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~ii  116 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMF  116 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEE
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEE
Confidence            99997765422    112222332      4556666777655

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.49  E-value=0.068  Score=43.44  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||.|.+|-...-+++  ..|++|.++|.....-     .....+.     .. ..+..++   +...|+|.+
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~~-----~~~~~~~-----~~-~~~l~~l---l~~sD~i~~  110 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAK--AFGFNVLFYDPYLSDG-----VERALGL-----QR-VSTLQDL---LFHSDCVTL  110 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECTTSCTT-----HHHHHTC-----EE-CSSHHHH---HHHCSEEEE
T ss_pred             eeCceEEEeccccccccceeeee--ccccceeeccCccccc-----chhhhcc-----cc-ccchhhc---cccCCEEEE
Confidence            56789999999988877666666  5799999999875431     1112231     11 1222222   245788876


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ....  +.+.+.=+=......||||++|+=
T Consensus       111 ~~pl--t~~T~~li~~~~l~~mk~~a~lIN  138 (193)
T d1mx3a1         111 HCGL--NEHNHHLINDFTVKQMRQGAFLVN  138 (193)
T ss_dssp             CCCC--CTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred             eecc--cccchhhhhHHHHhccCCCCeEEe
Confidence            5432  223332222355678999987754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.48  E-value=0.76  Score=38.28  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDE-AANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      +++.++.-|++ .|+   .+..||+   .|++|...|++. +.++...+.+++.|.   ++.++.+|+++..        
T Consensus         6 ~gK~alITGas-~GIG~aia~~la~---~G~~Vv~~~r~~~~~~~~~~~~~~~~g~---~~~~~~~Dvt~~~~v~~~~~~   78 (261)
T d1geea_           6 EGKVVVITGSS-TGLGKSMAIRFAT---EKAKVVVNYRSKEDEANSVLEEIKKVGG---EAIAVKGDVTVESDVINLVQS   78 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTTC---EEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEeCCcHHHHHHHHHHHHhcCC---cEEEEEccCCCHHHHHHHHHH
Confidence            56788888876 344   3455665   899999999984 567777777777773   7889999998632        


Q ss_pred             --ccCCCccEEEecccc
Q 036061          198 --EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v  212 (284)
                        ...+..|+++.++.+
T Consensus        79 ~~~~~G~iDiLVnnAG~   95 (261)
T d1geea_          79 AIKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCEeecccee
Confidence              134578998877644

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=86.13  E-value=0.26  Score=39.29  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             CCCCCEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDID  165 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid  165 (284)
                      .+..++|+.||+|..|+++.+ |++   .|.+|+-+|.+
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~---~G~~V~vier~   38 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILAR---KGYSVHILARD   38 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHH---CCCCEEEEeCC
Confidence            356679999999987876554 554   78899999975

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.02  E-value=1.6  Score=35.91  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             CCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      ++++++.-|++ .|+   .+..|++   .|++|+..|++++.++.   .++++|   .++.++.+|+++..         
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~---~~~~~~---~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSA-RGIGRAFAEAYVR---EGARVAIADINLEAARA---TAAEIG---PAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCS-SHHHHHHHHHHHH---TTEEEEEEESCHHHHHH---HHHHHC---TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHH---HHHHhC---CceEEEEeeCCCHHHHHHHHHHH
Confidence            56788888886 354   3445555   89999999999876554   444656   47899999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        74 ~~~~g~iDilVnnAg~   89 (256)
T d1k2wa_          74 LDRWGSIDILVNNAAL   89 (256)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCccEEEeeccc
Confidence             124678998877643

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=2.4  Score=35.34  Aligned_cols=106  Identities=15%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-C--CCccEE
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-L--GEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~--~~fD~V  206 (284)
                      |.+|+++=||.+|++. -|-+ ...+.+ |.++|+|+.|++.-+.+.   +    ...++++|+.++... +  .+.|++
T Consensus         2 p~kv~~lF~G~Gg~~~-gl~~-aG~~~~~~~a~E~~~~a~~~~~~n~---~----~~~~~~~di~~~~~~~~~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHH-ALRE-SCIPAQVVAAIDVNTVANEVYKYNF---P----HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHH-HHHH-HTCSEEEEEEECCCHHHHHHHHHHC---T----TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCEEEEcCcCccHHHH-HHHH-cCCCCeEEEEEECCHHHHHHHHHHC---C----CCCcccCchhhCCHhHcCCCCccEE
Confidence            6799999999887763 3433 223334 679999999988877753   3    345677888765432 1  268988


Q ss_pred             Eeccc-ccCCh--------HHHHHHHHHHHhhc-----CCCcEEEEEecCcccc
Q 036061          207 FLAAL-VGMSK--------EEKVKIIKHIRKYM-----KDGGVLLVRSAKGARA  246 (284)
Q Consensus       207 ~~aa~-v~~~~--------~~k~~il~~l~~~l-----~pGg~lv~r~~~glr~  246 (284)
                      +...- .+++.        .++..++-++.+.+     +|. .+++.+..|+.+
T Consensus        73 ~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~  125 (343)
T d1g55a_          73 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEV  125 (343)
T ss_dssp             EECCC------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGG
T ss_pred             EeecccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCccc
Confidence            74331 11111        22334544444443     465 577888877654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.69  E-value=1.3  Score=36.42  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=52.5

Q ss_pred             CCCCEEEEeccCCChh---HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          129 VNPKKVAFVGSGPMPL---TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~---tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      -+++.++.-|++ .|+   .+..|++   .|++|+..|++++.++..   .++++   .++.++.+|+.+..        
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~~~~~---~~~~~---~~~~~~~~Dv~~~~~v~~~~~~   73 (244)
T d1nffa_           4 LTGKVALVSGGA-RGMGASHVRAMVA---EGAKVVFGDILDEEGKAM---AAELA---DAARYVHLDVTQPAQWKAAVDT   73 (244)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHHTG---GGEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHH---HHHhh---CcceEEEeecCCHHHHHHHHHH
Confidence            357888888986 354   4455666   899999999999776544   44554   47899999998632        


Q ss_pred             --ccCCCccEEEecccc
Q 036061          198 --EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v  212 (284)
                        ...+..|+++.++.+
T Consensus        74 ~~~~~g~idilinnAG~   90 (244)
T d1nffa_          74 AVTAFGGLHVLVNNAGI   90 (244)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCeEEEECCcc
Confidence              123578998877644

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=85.69  E-value=0.47  Score=35.78  Aligned_cols=84  Identities=12%  Similarity=0.143  Sum_probs=43.7

Q ss_pred             EEEeccCCChhHHHHHHhhcCCCcEE-EEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc
Q 036061          134 VAFVGSGPMPLTSIVMAKNHLKSTHF-DNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV  212 (284)
Q Consensus       134 VL~IGsG~lp~tai~LA~~~~~g~~V-~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v  212 (284)
                      |=|||+|.+|..   |++....+..+ .-++++++..+..   .+..+.   .    ..+..   ......|+||++.- 
T Consensus         2 IgfIG~G~mg~~---l~~~L~~~~~~~~v~~R~~~~~~~l---~~~~~~---~----~~~~~---~~~~~~DiVil~v~-   64 (153)
T d2i76a2           2 LNFVGTGTLTRF---FLECLKDRYEIGYILSRSIDRARNL---AEVYGG---K----AATLE---KHPELNGVVFVIVP-   64 (153)
T ss_dssp             CEEESCCHHHHH---HHHTTC----CCCEECSSHHHHHHH---HHHTCC---C----CCSSC---CCCC---CEEECSC-
T ss_pred             EEEEeCcHHHHH---HHHHHHhCCCEEEEEeCChhhhcch---hhcccc---c----ccchh---hhhccCcEEEEecc-
Confidence            458999987654   56644445554 3677887665444   444442   1    11222   22356799997632 


Q ss_pred             cCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061          213 GMSKEEKVKIIKHIRKYMKDGGVLLVRSA  241 (284)
Q Consensus       213 ~~~~~~k~~il~~l~~~l~pGg~lv~r~~  241 (284)
                         .    +.+.++...++..+.+++...
T Consensus        65 ---d----~~i~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          65 ---D----RYIKTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             ---T----TTHHHHHTTTCCSSCCEEECC
T ss_pred             ---c----hhhhHHHhhhcccceeeeecc
Confidence               1    234566667776666666653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=84.96  E-value=0.13  Score=41.85  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+++|..||.|.+|-....+++  ..|++|.++|.......      ...+.     .  ..+.   ..-+...|+|.++
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~--~fg~~V~~~d~~~~~~~------~~~~~-----~--~~~l---~~~l~~sDii~~~  103 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIME--GFGAKVITYDIFRNPEL------EKKGY-----Y--VDSL---DDLYKQADVISLH  103 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCCHHH------HHTTC-----B--CSCH---HHHHHHCSEEEEC
T ss_pred             cCCeEEEecccccchhHHHhHh--hhcccccccCccccccc------cccee-----e--eccc---ccccccccccccc
Confidence            4789999999988877666665  57999999997754311      11221     1  1122   2223457998866


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      .-.  +.+.+.=+=++..+.|++|++||=
T Consensus       104 ~pl--t~~T~~li~~~~l~~mk~~a~lIN  130 (197)
T d1j4aa1         104 VPD--VPANVHMINDESIAKMKQDVVIVN  130 (197)
T ss_dssp             SCC--CGGGTTCBSHHHHHHSCTTEEEEE
T ss_pred             CCc--cccccccccHHHHhhhCCccEEEe
Confidence            432  222222222445578899877654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=84.85  E-value=5.1  Score=33.52  Aligned_cols=80  Identities=6%  Similarity=-0.046  Sum_probs=53.4

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEY  203 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~f  203 (284)
                      ++++++||..|+.  |+-.-++++.+ ..|.+|+++..+....+.-++...... ......++.+|+.+...   .....
T Consensus         8 ~~~gk~VlVTG~s--GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1           8 LPEGSLVLVTGAN--GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTT--SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCcCEEEEECCC--CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccc-cccccEEEeccccchhhhhhhcccc
Confidence            4678999999984  55555555532 358999999999877666655554443 34556678899875322   23568


Q ss_pred             cEEEecc
Q 036061          204 DCIFLAA  210 (284)
Q Consensus       204 D~V~~aa  210 (284)
                      |.|+..+
T Consensus        85 ~~v~~~a   91 (342)
T d1y1pa1          85 AGVAHIA   91 (342)
T ss_dssp             SEEEECC
T ss_pred             hhhhhhc
Confidence            8887554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=84.78  E-value=1.7  Score=33.66  Aligned_cols=71  Identities=11%  Similarity=0.046  Sum_probs=42.0

Q ss_pred             CCEEEEeccCCChhHH-H-HHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061          131 PKKVAFVGSGPMPLTS-I-VMAKNHLKSTHFDN-FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF  207 (284)
Q Consensus       131 ~~~VL~IGsG~lp~ta-i-~LA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~  207 (284)
                      .-||..||||..|-.. + .+.+ .....++++ .|.+++..   ++..++.|.     .....|..++..+ .+.|+|+
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~-~~~~~~i~~v~d~~~~~~---~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKN-LSHLFEITAVTSRTRSHA---EEFAKMVGN-----PAVFDSYEELLES-GLVDAVD   72 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHT-TTTTEEEEEEECSSHHHH---HHHHHHHSS-----CEEESCHHHHHHS-SCCSEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHh-CCCCeEEEEEEeccHhhh---hhhhccccc-----cceeeeeeccccc-cccceee
Confidence            3589999999655332 2 2322 223357776 49988664   445556663     1234666665543 4689998


Q ss_pred             eccc
Q 036061          208 LAAL  211 (284)
Q Consensus       208 ~aa~  211 (284)
                      ++..
T Consensus        73 I~tp   76 (181)
T d1zh8a1          73 LTLP   76 (181)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            7754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=84.65  E-value=0.55  Score=39.11  Aligned_cols=48  Identities=13%  Similarity=0.099  Sum_probs=36.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD  179 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~  179 (284)
                      ..++..|||.=+|. |.|++ .|.  ..|-+.+|+|+|+++++.|++.+...
T Consensus       248 s~~gdiVlDpF~GS-GTT~~-AA~--~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         248 TEPDDLVVDIFGGS-NTTGL-VAE--RESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTTCEEEETTCTT-CHHHH-HHH--HTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             ccCCCEEEecCCCC-cHHHH-HHH--HcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            47889999987775 44444 343  47899999999999999999865543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.53  E-value=0.14  Score=41.03  Aligned_cols=91  Identities=15%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      ..++++..||.|.+|-....+++  ..|++|.++|.....-..     ...+     +++  .+..++   +...|+|.+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~--~fg~~v~~~d~~~~~~~~-----~~~~-----~~~--~~l~el---l~~sDiv~~  104 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIA--AFGAYVVAYDPYVSPARA-----AQLG-----IEL--LSLDDL---LARADFISV  104 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECTTSCHHHH-----HHHT-----CEE--CCHHHH---HHHCSEEEE
T ss_pred             ccceeeeeccccchhHHHHHHhh--hccceEEeecCCCChhHH-----hhcC-----cee--ccHHHH---HhhCCEEEE
Confidence            46789999999988877666766  589999999987543221     1222     222  233222   345799886


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      ..-.  +++-+.=+=++..+.||||++|+=
T Consensus       105 ~~Pl--t~~T~~lin~~~l~~mk~~a~lIN  132 (184)
T d1ygya1         105 HLPK--TPETAGLIDKEALAKTKPGVIIVN  132 (184)
T ss_dssp             CCCC--STTTTTCBCHHHHTTSCTTEEEEE
T ss_pred             cCCC--CchhhhhhhHHHHhhhCCCceEEE
Confidence            6432  222222222366678999887754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=2.1  Score=35.01  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             CCCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------
Q 036061          129 VNPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------  197 (284)
                      -.++.+|.-|++ .|+-   +..||+   .|++|...|++++..+.+++    .+     ..++.+|+++..        
T Consensus         3 l~GK~alITGas-~GIG~aia~~la~---~G~~V~~~~~~~~~~~~~~~----~~-----~~~~~~Dv~~~~~v~~~~~~   69 (248)
T d2d1ya1           3 FAGKGVLVTGGA-RGIGRAIAQAFAR---EGALVALCDLRPEGKEVAEA----IG-----GAFFQVDLEDERERVRFVEE   69 (248)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESSTTHHHHHHH----HT-----CEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cC-----CeEEEEeCCCHHHHHHHHHH
Confidence            367899998976 3543   445555   89999999999987665543    34     367788998632        


Q ss_pred             --ccCCCccEEEecccc-------cCChHHH-----------HHHHHHHHhhcCC--CcEEEEEe
Q 036061          198 --EKLGEYDCIFLAALV-------GMSKEEK-----------VKIIKHIRKYMKD--GGVLLVRS  240 (284)
Q Consensus       198 --~~~~~fD~V~~aa~v-------~~~~~~k-----------~~il~~l~~~l~p--Gg~lv~r~  240 (284)
                        ...+..|+++.++.+       .++.++.           ..+.+.+.++|++  +|.++.-+
T Consensus        70 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is  134 (248)
T d2d1ya1          70 AAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA  134 (248)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence              134678998876643       1233332           3455666677754  57776644

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.27  E-value=0.36  Score=41.34  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA  168 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a  168 (284)
                      .++|+.||||+.|+++.....  ..|.+|+-+|-++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~--k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLA--EKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHH--hCCCCEEEEECCCCC
Confidence            579999999988888776655  368999999988643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.25  E-value=0.26  Score=39.08  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=27.2

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~  166 (284)
                      -|+.||+||.|+++..-|.  ..|.+|+.||.++
T Consensus         4 DvvVIG~G~aG~~aA~~a~--~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAA--MYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHH--HCCCEEEEEeccC
Confidence            4789999999999888777  4789999999763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=0.15  Score=40.01  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=27.9

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI  164 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi  164 (284)
                      +++.+|+.||+||.|++|...+.  ..|.+|+-||.
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~a--r~g~~v~iie~   36 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAA--RANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHH--TTTCCCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHH--HcCCceEEEEe
Confidence            45679999999999998887666  37889999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.88  E-value=0.63  Score=34.51  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI--------DEAANDVARQIVSSDI  180 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~G  180 (284)
                      ...|++++.||+|.+|+-.....+  ..|.+||-++.        |+++.+..++.+++.|
T Consensus        23 ~~~p~~vvIiGgG~IG~E~A~~~~--~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g   81 (125)
T d1ojta2          23 KEVPGKLLIIGGGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF   81 (125)
T ss_dssp             CCCCSEEEEESCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             cccCCeEEEECCCHHHHHHHHHhh--cCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence            367899999999977664333322  36999999965        5578888888887766

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=83.86  E-value=1.5  Score=31.67  Aligned_cols=82  Identities=17%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCC
Q 036061          156 STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG  233 (284)
Q Consensus       156 g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG  233 (284)
                      |-+|.-+|=++...+..++.+++.|.   ++.....|+.+....+  ..||+|+++..  |+..+=.++++++.+. .|.
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~---~v~~~a~~~~~al~~~~~~~~dliilD~~--mp~~~G~e~~~~ir~~-~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGY---EVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKI-DPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHH-CTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC---ceEEEECCHHHHHHHHHhccCCEEEEecC--CCCCCHHHHHHHHHHh-CCC
Confidence            56788999999999999999999884   4443445665544322  36999998854  3445566788888654 667


Q ss_pred             cEEEEEecCc
Q 036061          234 GVLLVRSAKG  243 (284)
Q Consensus       234 g~lv~r~~~g  243 (284)
                      -.+++-++++
T Consensus        75 ~pvi~ls~~~   84 (118)
T d1u0sy_          75 AKIIVCSAMG   84 (118)
T ss_dssp             CCEEEEECTT
T ss_pred             CcEEEEEccC
Confidence            7677766543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.84  Score=35.94  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             CCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEE
Q 036061          131 PKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCI  206 (284)
Q Consensus       131 ~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V  206 (284)
                      -+||+.+|+ |.+|-..+  .+....|.+|++++++++.+       ...  ...+++++.+|+.+...   .+.+.|+|
T Consensus         3 ~kkIlV~GatG~iG~~v~--~~Ll~~g~~V~~~~R~~~~~-------~~~--~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTL--AQAVQAGYEVTVLVRDSSRL-------PSE--GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCEEEEESTTSHHHHHHH--HHHHHTTCEEEEEESCGGGS-------CSS--SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHH--HHHHHCcCEEEEEEcChhhc-------ccc--cccccccccccccchhhHHHHhcCCCEE
Confidence            478999995 54443322  11123689999999997752       112  23678999999987432   24578998


Q ss_pred             Eecc
Q 036061          207 FLAA  210 (284)
Q Consensus       207 ~~aa  210 (284)
                      |...
T Consensus        72 i~~~   75 (205)
T d1hdoa_          72 IVLL   75 (205)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.44  E-value=1.8  Score=35.38  Aligned_cols=100  Identities=14%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             EEEeccCCChhH---HHHHHhhcCCCcEEEEEeC-ChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------cc
Q 036061          134 VAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDI-DEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------EK  199 (284)
Q Consensus       134 VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDi-d~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------~~  199 (284)
                      ||.-|++ .|+.   +..||+   .|++|+..|. +++.++...+.++..|   .++.++.+|+.+..          ..
T Consensus         4 ~lITGas-~GIG~a~a~~la~---~Ga~V~i~~~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (244)
T d1edoa_           4 VVVTGAS-RGIGKAIALSLGK---AGCKVLVNYARSAKAAEEVSKQIEAYG---GQAITFGGDVSKEADVEAMMKTAIDA   76 (244)
T ss_dssp             EEETTCS-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHHT---CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEeCCC-cHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4444554 3443   344555   8999987664 7788888888888877   38889999998632          23


Q ss_pred             CCCccEEEecccc-------cCChHHH-----------HHHHHHHHhhc--CCCcEEEEEe
Q 036061          200 LGEYDCIFLAALV-------GMSKEEK-----------VKIIKHIRKYM--KDGGVLLVRS  240 (284)
Q Consensus       200 ~~~fD~V~~aa~v-------~~~~~~k-----------~~il~~l~~~l--~pGg~lv~r~  240 (284)
                      .+..|+++.++.+       .++.++.           ..+.+.+.++|  +.+|.++.-+
T Consensus        77 ~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis  137 (244)
T d1edoa_          77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA  137 (244)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence            4679998877643       1233333           33444556666  4577777655

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.36  E-value=2.2  Score=34.83  Aligned_cols=62  Identities=8%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             CEEEEe-ccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061          132 KKVAFV-GSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ  195 (284)
Q Consensus       132 ~~VL~I-GsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~  195 (284)
                      .||+.| |++ -|+.   +..||+....|++|+.+|++++.++...+.+...+ ...++.++.+|+.+
T Consensus         6 gKvalITGas-~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           6 CAVCVLTGAS-RGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ-PDLKVVLAAADLGT   71 (259)
T ss_dssp             SEEEEESSCS-SHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC-TTSEEEEEECCTTS
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc-CCceEEEEEccCCC
Confidence            355555 664 3443   34455422379999999999999988877776655 34689999999886

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=83.20  E-value=0.21  Score=38.65  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=24.6

Q ss_pred             EEEEeccCCChhHHHH-HHhhcCCCc-EEEEEeCCh
Q 036061          133 KVAFVGSGPMPLTSIV-MAKNHLKST-HFDNFDIDE  166 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~-LA~~~~~g~-~V~~iDid~  166 (284)
                      +|+.||+|+.|+++.+ |++   .|. .|+-+|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~---~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSE---AGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHH---TTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHh---CCCCcEEEEECCC
Confidence            6999999999997665 444   675 599999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.03  E-value=0.27  Score=39.07  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             EEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCCh
Q 036061          133 KVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDE  166 (284)
Q Consensus       133 ~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~  166 (284)
                      -|+.||+||.|+++ +.+|+   .|.+|+.||-.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~---~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQ---LGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHH---CCCcEEEEEecC
Confidence            58899999999986 56665   789999999764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.88  E-value=1.1  Score=34.83  Aligned_cols=80  Identities=16%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCe-EEEEeccccccccCCCccE
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDV-ARQIVSSDIEFEKRM-KFVTCDIMQVKEKLGEYDC  205 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~G~l~~~I-~f~~~D~~~~~~~~~~fD~  205 (284)
                      ..++++||.+|+|..+- |+..|= ...| +|+-+.++++..+. +.+.......  ..+ .+...+   +......+|+
T Consensus        15 ~~~~k~vlIlGaGG~ar-ai~~aL-~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~dl   86 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAAR-AVAFEL-AKDN-NIIIANRTVEKAEALAKEIAEKLNK--KFGEEVKFSG---LDVDLDGVDI   86 (177)
T ss_dssp             CCCSCEEEEECCSHHHH-HHHHHH-TSSS-EEEEECSSHHHHHHHHHHHHHHHTC--CHHHHEEEEC---TTCCCTTCCE
T ss_pred             CcCCCEEEEECCcHHHH-HHHHHH-cccc-ceeeehhhhhHHHHHHHHHHHhhch--hhhhhhhhhh---hhhccchhhh
Confidence            36789999999993322 233332 2344 89999999776544 3333333321  111 111122   2334457899


Q ss_pred             EEecccccCC
Q 036061          206 IFLAALVGMS  215 (284)
Q Consensus       206 V~~aa~v~~~  215 (284)
                      |+.+..++|.
T Consensus        87 iIn~tp~g~~   96 (177)
T d1nvta1          87 IINATPIGMY   96 (177)
T ss_dssp             EEECSCTTCT
T ss_pred             hccCCccccc
Confidence            9877666664

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.74  E-value=0.93  Score=37.61  Aligned_cols=74  Identities=19%  Similarity=0.138  Sum_probs=42.0

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEe-CChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cC--CCcc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFD-IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KL--GEYD  204 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iD-id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~--~~fD  204 (284)
                      .|||..|+.  |+-.-.+.+.+ ..|.+|+++| +++.......+.+...    .+++|+.+|+.+...   ..  .++|
T Consensus         1 ~KILVTGat--GfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~----~~~~~i~~Di~~~~~l~~~~~~~~~d   74 (338)
T d1orra_           1 AKLLITGGC--GFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMPD   74 (338)
T ss_dssp             CEEEEETTT--SHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCC--cHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc----CCcEEEEcccCCHHHHHHHHHhcCCc
Confidence            378888773  33333333322 3689999998 4433322222222222    479999999976321   11  2579


Q ss_pred             EEEeccc
Q 036061          205 CIFLAAL  211 (284)
Q Consensus       205 ~V~~aa~  211 (284)
                      .||-.+.
T Consensus        75 ~Vih~aa   81 (338)
T d1orra_          75 SCFHLAG   81 (338)
T ss_dssp             EEEECCC
T ss_pred             eEEeecc
Confidence            9985543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.68  E-value=0.79  Score=34.64  Aligned_cols=79  Identities=11%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061          132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA  210 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa  210 (284)
                      +||.+||+|.+|..   +|++. ..|..|+.+|.++......+.  ...+.        +.+..++.   ...|+||++.
T Consensus         1 MkIgiIG~G~mG~~---ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~~~~--------~~~~~e~~---~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQT---LASRLRSRGVEVVTSLEGRSPSTIERA--RTVGV--------TETSEEDV---YSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHH---HHHHHHHTTCEEEECCTTCCHHHHHHH--HHHTC--------EECCHHHH---HTSSEEEECS
T ss_pred             CEEEEEcHHHHHHH---HHHHHHHCCCeEEEEcCchhHHHHHhh--hcccc--------cccHHHHH---hhcCeEEEEe
Confidence            48999999987765   34432 367899999988765543322  23331        12222222   3578888763


Q ss_pred             cccCChHHHHHHHHHHHhhc
Q 036061          211 LVGMSKEEKVKIIKHIRKYM  230 (284)
Q Consensus       211 ~v~~~~~~k~~il~~l~~~l  230 (284)
                      .    ...-.+++..+...+
T Consensus        65 ~----~~~~~~~~~~~~~~~   80 (152)
T d1i36a2          65 T----PGVALGAARRAGRHV   80 (152)
T ss_dssp             C----GGGHHHHHHHHHTTC
T ss_pred             c----CchHHHHHHhhcccC
Confidence            3    233445556666554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=1.6  Score=35.87  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=50.2

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      .++.+|.-|++ .|+-   +..|++   .|++|+..|++++.++...   +..+    ++.++.+|+.+..         
T Consensus         5 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~---~~~~----~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGG-RGIGAGIVRAFVN---SGARVVICDKDESGGRALE---QELP----GAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHH---HHCT----TEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHH---HhcC----CCeEEEccCCCHHHHHHHHHHH
Confidence            57889999986 3443   444555   8999999999998765443   3443    5789999997632         


Q ss_pred             -ccCCCccEEEeccc
Q 036061          198 -EKLGEYDCIFLAAL  211 (284)
Q Consensus       198 -~~~~~fD~V~~aa~  211 (284)
                       ...+..|+++.++.
T Consensus        74 ~~~~g~iDilVnnAG   88 (250)
T d1ydea1          74 IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             23467899887764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=2.9  Score=35.13  Aligned_cols=80  Identities=8%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             CCCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-cCC-CCCCeEEEEecccccc------
Q 036061          129 VNPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-DIE-FEKRMKFVTCDIMQVK------  197 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~G~-l~~~I~f~~~D~~~~~------  197 (284)
                      -+++.+|.-|++ .|+.   +..||+   .|++|+..|++++.++.+.+-+.. ... ...++.++.+|+.+..      
T Consensus        10 L~gKvalITGas-~GIG~aia~~la~---~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1          10 LQGQVAIVTGGA-TGIGKAIVKELLE---LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            467899999986 3554   344555   899999999999888766655543 210 1358999999998632      


Q ss_pred             ----ccCCCccEEEecccc
Q 036061          198 ----EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 ----~~~~~fD~V~~aa~v  212 (284)
                          ...+..|+++.++.+
T Consensus        86 ~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHhCCeEEEEeeccc
Confidence                124678999877643

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.19  E-value=1.1  Score=36.40  Aligned_cols=49  Identities=12%  Similarity=-0.081  Sum_probs=37.1

Q ss_pred             CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 036061          128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI  180 (284)
Q Consensus       128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G  180 (284)
                      ..++..|||-=+|. |.|++. |.  ..|-+.+|+|+|++..+.|++.++...
T Consensus       205 s~~gdiVLDpF~GS-GTT~~A-a~--~lgR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         205 SHPGSTVLDFFAGS-GVTARV-AI--QEGRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             SCTTCEEEETTCTT-CHHHHH-HH--HHTCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEecCCCC-cHHHHH-HH--HhCCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            36889999876664 344443 32  367899999999999999999998754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.19  E-value=4.9  Score=30.28  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CCCCEEEEec-cCCChhHHHHH-HhhcCCC----cEEEEEeCChHHHHHHHHHHH---hcCCCCCCeEEEEecccccccc
Q 036061          129 VNPKKVAFVG-SGPMPLTSIVM-AKNHLKS----THFDNFDIDEAANDVARQIVS---SDIEFEKRMKFVTCDIMQVKEK  199 (284)
Q Consensus       129 ~~~~~VL~IG-sG~lp~tai~L-A~~~~~g----~~V~~iDid~~ai~~Ar~~~~---~~G~l~~~I~f~~~D~~~~~~~  199 (284)
                      +.|.||.-|| +|..|.+..++ +.....+    ...+-+|+++. .+.++.+..   ... ......+...+-  ....
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~-~~~~~~~~~~~~--~~~~   76 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCA-LPLLKDVIATDK--EEIA   76 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTC-CTTEEEEEEESC--HHHH
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccc-cccccccccCcc--cccc
Confidence            3688999999 69888775553 3211212    35777777643 344444332   222 122222332221  1234


Q ss_pred             CCCccEEEecccc----cCChH--------HHHHHHHHHHhhcCCCcEEEEE
Q 036061          200 LGEYDCIFLAALV----GMSKE--------EKVKIIKHIRKYMKDGGVLLVR  239 (284)
Q Consensus       200 ~~~fD~V~~aa~v----~~~~~--------~k~~il~~l~~~l~pGg~lv~r  239 (284)
                      ..+-|+|++.+..    +++..        .-.++.+.+.++-.+.+++++-
T Consensus        77 ~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivv  128 (154)
T d5mdha1          77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVV  128 (154)
T ss_dssp             TTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEe
Confidence            5678999887754    33221        1245555666665556765553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.03  E-value=0.27  Score=39.79  Aligned_cols=92  Identities=15%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061          130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA  209 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a  209 (284)
                      .+++|..||.|.+|-....+++  ..|++|.++|..+..           + ....+.+  .+..++   +...|+|.+.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~-----------~-~~~~~~~--~~l~~l---~~~~D~v~~~  104 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFK--GFGAKVIAYDPYPMK-----------G-DHPDFDY--VSLEDL---FKQSDVIDLH  104 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCCS-----------S-CCTTCEE--CCHHHH---HHHCSEEEEC
T ss_pred             cceeeeeeeccccccccccccc--ccceeeeccCCccch-----------h-hhcchhH--HHHHHH---HHhcccceee
Confidence            4689999999988876555655  479999999986431           2 1223333  233332   2457998865


Q ss_pred             ccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061          210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG  243 (284)
Q Consensus       210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g  243 (284)
                      ...  +.+.+.-+=.+..+.||+|++|| ..++|
T Consensus       105 ~pl--t~~T~~li~~~~l~~mk~~a~lI-N~aRG  135 (199)
T d1dxya1         105 VPG--IEQNTHIINEAAFNLMKPGAIVI-NTARP  135 (199)
T ss_dssp             CCC--CGGGTTSBCHHHHHHSCTTEEEE-ECSCT
T ss_pred             ecc--cccccccccHHHhhccCCceEEE-ecccH
Confidence            432  23333223345667889988765 44443

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.88  E-value=1.7  Score=35.52  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CCCEEEEeccCCChhH---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---------
Q 036061          130 NPKKVAFVGSGPMPLT---SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------  197 (284)
Q Consensus       130 ~~~~VL~IGsG~lp~t---ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------  197 (284)
                      +++.++.-|++ .|+-   +..||+   .|++|...|+++.  +.+.+.++..|   .++.++.+|+.+..         
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~---~Ga~V~~~~~~~~--~~~~~~~~~~g---~~~~~~~~Dvs~~~~v~~~~~~~   74 (247)
T d2ew8a1           4 KDKLAVITGGA-NGIGRAIAERFAV---EGADIAIADLVPA--PEAEAAIRNLG---RRVLTVKCDVSQPGDVEAFGKQV   74 (247)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESSCC--HHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCch--HHHHHHHHHcC---CcEEEEEeeCCCHHHHHHHHHHH
Confidence            46788888886 3442   444555   8999999999875  34556666766   48999999998632         


Q ss_pred             -ccCCCccEEEecccc
Q 036061          198 -EKLGEYDCIFLAALV  212 (284)
Q Consensus       198 -~~~~~fD~V~~aa~v  212 (284)
                       ...+..|+++.++.+
T Consensus        75 ~~~~G~iDilVnnAG~   90 (247)
T d2ew8a1          75 ISTFGRCDILVNNAGI   90 (247)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence             124678998877644

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=81.82  E-value=0.26  Score=39.35  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061          129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL  208 (284)
Q Consensus       129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~  208 (284)
                      -.+++|..||+|.+|..-..+++  ..|.+|.++|..+..-..    ....+.     .. ..+..+   -++..|+|.+
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~~~~----~~~~~~-----~~-~~~l~~---~l~~sD~v~~  106 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLA--PFDVHLHYTDRHRLPESV----EKELNL-----TW-HATRED---MYPVCDVVTL  106 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHG--GGTCEEEEECSSCCCHHH----HHHHTC-----EE-CSSHHH---HGGGCSEEEE
T ss_pred             ccccceeeccccccchhhhhhhh--ccCceEEEEeeccccccc----cccccc-----cc-cCCHHH---HHHhccchhh
Confidence            46789999999987765444444  478999999986432221    122221     11 122222   2356799876


Q ss_pred             cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061          209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV  238 (284)
Q Consensus       209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~  238 (284)
                      +...  +++.+.=+=.+....||+|.+||=
T Consensus       107 ~~pl--t~~T~~li~~~~l~~mk~ga~lIN  134 (188)
T d2naca1         107 NCPL--HPETEHMINDETLKLFKRGAYIVN  134 (188)
T ss_dssp             CSCC--CTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred             cccc--cccchhhhHHHHHHhCCCCCEEEe
Confidence            5432  233333333566778999887654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.79  E-value=0.29  Score=39.23  Aligned_cols=31  Identities=16%  Similarity=0.144  Sum_probs=25.8

Q ss_pred             EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC
Q 036061          133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID  165 (284)
Q Consensus       133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid  165 (284)
                      -|+.||+||.|++|..-|.  ..|.+|+.||..
T Consensus         5 DviVIG~GpaGl~aA~~aa--~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAA--KFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHG--GGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHH--HCCCeEEEEecc
Confidence            4889999999998877766  479999999954

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.60  E-value=0.49  Score=38.28  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=26.6

Q ss_pred             CEEEEeccCCChhHHHHHH-hhcCCCcEEEEEeCCh
Q 036061          132 KKVAFVGSGPMPLTSIVMA-KNHLKSTHFDNFDIDE  166 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai~LA-~~~~~g~~V~~iDid~  166 (284)
                      .||+.||+||.|++|-..| +....+.+|+.||.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            3899999999999876554 4334567899999653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=5.2  Score=35.61  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             CCEEEEeccCCChhHHHH-HHhhcCCCc-EEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEEE
Q 036061          131 PKKVAFVGSGPMPLTSIV-MAKNHLKST-HFDNFDIDE-------------------AANDVARQIVSSDIEFEKRMKFV  189 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~-LA~~~~~g~-~V~~iDid~-------------------~ai~~Ar~~~~~~G~l~~~I~f~  189 (284)
                      ..|||.||+|.+|-..+. |+.   .|. +++-+|.|.                   .-.+.|.+.+.+.. ..-+|+.+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~---~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~  112 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLAL---SGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PNCNVVPH  112 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHT---TTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TTCCCEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHH---cCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CCCceEee
Confidence            479999999977654333 333   454 688888752                   12444555555554 24567777


Q ss_pred             Eecccccccc-CCCccEEEecccccCChHHHHHHHHHHHhh
Q 036061          190 TCDIMQVKEK-LGEYDCIFLAALVGMSKEEKVKIIKHIRKY  229 (284)
Q Consensus       190 ~~D~~~~~~~-~~~fD~V~~aa~v~~~~~~k~~il~~l~~~  229 (284)
                      ..++.+...+ ..+||+|+.+..   +.+.|..+=+.+...
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D---n~~aR~~in~~c~~l  150 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD---SIIARRWINGMLISL  150 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS---CHHHHHHHHHHHHHT
T ss_pred             eccccchHHHHHHhcchheeccC---cHHHHHHHHHHHHHh
Confidence            7777654332 368999986543   124454444444433

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.32  E-value=0.39  Score=38.69  Aligned_cols=35  Identities=11%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             CCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChH
Q 036061          131 PKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEA  167 (284)
Q Consensus       131 ~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~  167 (284)
                      |.+|+.||+|+-|+++-.+.+  ..|. .|+-+|.+++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~--~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALH--QAGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--HTTCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHH--hCCCCeEEEEeCCCC
Confidence            578999999988877655544  2674 8888888764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.42  E-value=0.5  Score=40.18  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChH
Q 036061          132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEA  167 (284)
Q Consensus       132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~  167 (284)
                      +||+.||+|+.|+++. .|++ ...+..|+.+|.++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~-~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLA-EKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHH-hCCCCCEEEEECCCC
Confidence            6999999999897765 4544 234569999999853