Citrus Sinensis ID: 036074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MEMNFIPYHHHLVNSLSNHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEcccccccEEHHHHHHHHHHHHHHHHHcEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHccccccccHHHcccccccccccccHcccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHcHHEHHHcccccccccEHHHHHHHHHHHHHHEEEEEEEEEccccEEEEccHHHHHHHHcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccHcHHHHHHHHEHEHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
memnfipyhhhlvnslsnhhhpknnhlreeegddasLSLRNlsklilpplgvssynqnqtkskwiispmdsryRCWETFMVLLVAYSAWVYPFEfaflhsspdkklyIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFflgsgygatvvpcysciqpldalgfvkstdIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSkygwhnscmnpfrtVRNFIHFFFVLIYYLGCDSG
Flexible Loop (DISEMBL)
MEMNFIPYHHHLVNSLSNHHHPKNNHLREEEGDDASLSLRNLSKLIlpplgvssynqnqtkskwiispmdSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Low Complexity Region (SEG)
MEMNFIPYhhhlvnslsnhhhPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Disordered region (IsUnstruct)
*****IPYHHHL*******************************KLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGC***
Disordered Region (DISOPRED)
***************************************************************WIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Disordered Region (DISEMBL)
MEMNFIPYHHHLVNSLSNHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Disordered Region (DISPRO)
**************S*S***************************L*LPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMNFIPYHHHLVNSLSNHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCDSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q38898	802	Potassium channel AKT2/3	yes	no	0.698	0.248	0.543	2e-66
Q75HP9	855	Potassium channel AKT2 OS	yes	no	0.568	0.189	0.477	4e-51
Q6K3T2	718	Potassium channel KAT1 OS	yes	no	0.526	0.208	0.387	2e-30
Q38849	697	Potassium channel KAT2 OS	no	no	0.540	0.220	0.399	7e-30
Q39128	677	Potassium channel KAT1 OS	no	no	0.540	0.227	0.399	2e-29
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.540	0.164	0.380	3e-29
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.540	0.164	0.380	3e-29
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.568	0.182	0.357	7e-29
Q5JM04	502	Potassium channel KAT3 OS	no	no	0.547	0.310	0.342	7e-29
Q38998	857	Potassium channel AKT1 OS	no	no	0.526	0.175	0.363	5e-28

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/252 (54%), Positives = 160/252 (63%), Gaps = 53/252 (21%)

Query: 1   MEMNFIPYHHHLVNSLS-NHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQ 59
           M++ +   H +L + +     H      REEE D +SLSL NLSKLILPPLGV+SYNQN 
Sbjct: 1   MDLKYSASHCNLSSDMKLRRFHQHRGKGREEEYDASSLSLNNLSKLILPPLGVASYNQNH 60

Query: 60  TKSK-WIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFA 118
            +S  WIISPMDSRYRCWE +MVLLVAYSAWVYPFE AFL+SSP + L IAD+IVDLFFA
Sbjct: 61  IRSSGWIISPMDSRYRCWEFYMVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFA 120

Query: 119 IDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPL 178
           +DI LTFFVAYI  R+QLLVREPK+IA+R                               
Sbjct: 121 VDIVLTFFVAYIDERTQLLVREPKQIAVR------------------------------- 149

Query: 179 DALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILR 238
                               Y+ TWFLMDVASTIPF+AIGYLITG     ++ +LLG+LR
Sbjct: 150 --------------------YLSTWFLMDVASTIPFDAIGYLITGTSTLNITCNLLGLLR 189

Query: 239 FWRLRRVKQLFT 250
           FWRLRRVK LFT
Sbjct: 190 FWRLRRVKHLFT 201

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.
Arabidopsis thaliana (taxid: 3702)

>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/218 (47%), Positives = 134/218 (61%), Gaps = 56/218 (25%)

Query: 38  SLRNLSKLILPPLGVSSYNQNQT-----KSKWIISPMDSRYRCWETFMVLLVAYSAWVYP 92
           +LRNLSKLILPPLGV +    Q+       + +ISP+DSRYRCW+TFMV+LVAYSAWVYP
Sbjct: 31  NLRNLSKLILPPLGVPAGGHAQSGHAGPNDRRVISPLDSRYRCWDTFMVVLVAYSAWVYP 90

Query: 93  FEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAIS 152
           FE AF+++SP   L +AD +VDLFFA+DI LTFFVAYI  R+QLLVR+ ++IA R     
Sbjct: 91  FEVAFMNASPKGGLEVADIVVDLFFAVDIVLTFFVAYIDSRTQLLVRDRRRIATR----- 145

Query: 153 AGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTI 212
                                                         Y+ T+F+MDVASTI
Sbjct: 146 ----------------------------------------------YLSTFFIMDVASTI 159

Query: 213 PFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           PF+ + Y++TG  + + ++SLLGILR WRLR+VKQ FT
Sbjct: 160 PFQGLAYIVTGEVRESPAFSLLGILRLWRLRKVKQFFT 197

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K3T2|KAT1_ORYSJ Potassium channel KAT1 OS=Oryza sativa subsp. japonica GN=Os02g0245800 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 54/204 (26%)

Query: 46  ILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKK 105
           +LP LG ++ N +    K+IISP D RYR WE F+++LV YSAW+ PFE AFL   P  K
Sbjct: 30  LLPSLG-ATINHSNKLQKFIISPYDPRYRSWELFLIVLVVYSAWICPFELAFLRDLP-SK 87

Query: 106 LYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYG 165
           L + ++IVD+FFAIDI LTFFVAY+  ++ LLV + K+IA+R                  
Sbjct: 88  LLLVENIVDIFFAIDIVLTFFVAYVDSKTHLLVDDRKRIAMR------------------ 129

Query: 166 ATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNK 225
                                            Y+ TWF+ DV ST PF+ I  L T +K
Sbjct: 130 ---------------------------------YLSTWFIFDVCSTAPFQPIILLFT-HK 155

Query: 226 KAALSYSLLGILRFWRLRRVKQLF 249
              +++ +L +LR WRL RV  LF
Sbjct: 156 GNDIAFKVLNLLRLWRLHRVSSLF 179

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38849|KAT2_ARATH Potassium channel KAT2 OS=Arabidopsis thaliana GN=KAT2 PE=1 SV=3

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 107/208 (51%), Gaps = 54/208 (25%)

Query: 42  LSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS 101
           LS  +LP LG +  NQ+    K IISP D R+R WE ++V+LV YSAW+ PFEFAF+   
Sbjct: 29  LSADLLPSLG-ARINQSTKLRKHIISPFDPRFRGWEMWLVILVIYSAWICPFEFAFITYK 87

Query: 102 PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLG 161
            D  L+I D+IV+ FFAIDI LTFFVAY+   S LLV +PKKIA+R              
Sbjct: 88  KD-ALFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDKPKKIAIR-------------- 132

Query: 162 SGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLI 221
                                                Y+ TWF  DV ST PF+++  L 
Sbjct: 133 -------------------------------------YLSTWFAFDVCSTAPFQSLSLLF 155

Query: 222 TGNKKAALSYSLLGILRFWRLRRVKQLF 249
             N  + + + +L +LR WRLRRV  LF
Sbjct: 156 KYN-GSEIGFRVLSMLRLWRLRRVSSLF 182

Highly selective inward-rectifying potassium channel. This voltage-dependent channel could mediate long-term potassium influx into guard cells leading to stomatal opening. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. The channel activity is enhanced upon external acidification.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39128|KAT1_ARATH Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 105/208 (50%), Gaps = 54/208 (25%)

Query: 42  LSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS 101
           LS  +LP LG +  NQ+    K IISP + RYR WE ++VLLV YSAW+ PF+FAF+   
Sbjct: 29  LSADLLPSLG-ARINQSTKLRKHIISPFNPRYRAWEMWLVLLVIYSAWICPFQFAFITYK 87

Query: 102 PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLG 161
            D  ++I D+IV+ FFAIDI LTFFVAY+   S LLV  PKKIA+R              
Sbjct: 88  KD-AIFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDSPKKIAIR-------------- 132

Query: 162 SGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLI 221
                                                Y+ TWF  DV ST PF+ +  L 
Sbjct: 133 -------------------------------------YLSTWFAFDVCSTAPFQPLSLLF 155

Query: 222 TGNKKAALSYSLLGILRFWRLRRVKQLF 249
             N  + L + +L +LR WRLRRV  LF
Sbjct: 156 NYN-GSELGFRILSMLRLWRLRRVSSLF 182

Highly selective inward-rectifying potassium channel. This voltage-gated channel could mediate long-term potassium influx into guard cells leading to stomatal opening. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. The channel activity is enhanced upon external acidification. Also permeable to ammonium ions. Blocked by tetraethylammonium and barium ions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 104/210 (49%), Gaps = 56/210 (26%)

Query: 41  NLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHS 100
           ++S  ILP LG  S N+     ++IISP D RYR WETF+++LV YSAWV PFEF F+  
Sbjct: 70  SISSAILPSLGARS-NRRIKLRRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFI-P 127

Query: 101 SPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFL 160
            P   L  AD++V+ FFA+DI LTFFVAY+ + S +L  +PKKIA R             
Sbjct: 128 KPTGALATADNVVNAFFAVDIILTFFVAYLDKMSYMLEDDPKKIAWR------------- 174

Query: 161 GSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYL 220
                                                 Y  TW ++DVASTIP E    +
Sbjct: 175 --------------------------------------YSTTWLVLDVASTIPSEFARRI 196

Query: 221 ITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           +    +   SY    +LR WRLRRV  LF+
Sbjct: 197 LPSKLR---SYGFFNMLRLWRLRRVSSLFS 223

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 104/210 (49%), Gaps = 56/210 (26%)

Query: 41  NLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHS 100
           ++S  ILP LG  S N+     ++IISP D RYR WETF+++LV YSAWV PFEF F+  
Sbjct: 70  SISSAILPSLGARS-NRRIKLRRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFI-P 127

Query: 101 SPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFL 160
            P   L  AD++V+ FFA+DI LTFFVAY+ + S +L  +PKKIA R             
Sbjct: 128 KPTGALATADNVVNAFFAVDIILTFFVAYLDKMSYMLEDDPKKIAWR------------- 174

Query: 161 GSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYL 220
                                                 Y  TW ++DVASTIP E    +
Sbjct: 175 --------------------------------------YSTTWLVLDVASTIPSEFARRI 196

Query: 221 ITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           +    +   SY    +LR WRLRRV  LF+
Sbjct: 197 LPSKLR---SYGFFNMLRLWRLRRVSSLFS 223

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 108/218 (49%), Gaps = 56/218 (25%)

Query: 34  DASLSLRNLSKLILPPLGVSSYN-QNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYP 92
           D ++S  +LSK +LP LG ++ + ++    ++I+SP D RYR WETF+V LV Y+AW  P
Sbjct: 40  DGTMSQYSLSKGLLPSLGANNRSSRDVILPRFIVSPFDPRYRAWETFLVFLVLYTAWASP 99

Query: 93  FEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAIS 152
           FEF FL   P   L I D+IV+ FFA+DI LTFFVA++ + + LLV +PK+IA R     
Sbjct: 100 FEFGFLQ-KPRPPLSILDNIVNGFFAVDIVLTFFVAFLDKVTYLLVDDPKRIAWR----- 153

Query: 153 AGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTI 212
                                                         Y  TW + DV ST 
Sbjct: 154 ----------------------------------------------YASTWLIFDVVSTF 167

Query: 213 PFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           P+E  G L+    ++   Y +  +LR WRLRRV   F 
Sbjct: 168 PYEIFGSLL---HESIQGYGIFSMLRLWRLRRVSNCFA 202

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JM04|KAT3_ORYSJ Potassium channel KAT3 OS=Oryza sativa subsp. japonica GN=Os01g0756700 PE=2 SV=1

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 54/210 (25%)

Query: 41  NLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHS 100
           N    +LP LG +++   + + K+++SP D RY+ WETF+++LV YSAW+ P EFAFL  
Sbjct: 32  NFPDDLLPSLGATAHQPPKLR-KYLVSPYDPRYKVWETFLIILVVYSAWICPLEFAFLRY 90

Query: 101 SPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFL 160
            P    ++ D +V+ FFA+DI LTFFV ++ ++S LLV +PKKIA+R             
Sbjct: 91  LPSAP-FVVDDVVNGFFAVDIMLTFFVPFVDKKSYLLVNDPKKIAVR------------- 136

Query: 161 GSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYL 220
                                                 Y+ +WF+ DV ST+PF +I  L
Sbjct: 137 --------------------------------------YLSSWFVFDVCSTVPFHSIS-L 157

Query: 221 ITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           +       L +  L +LR WRLRRV  +F 
Sbjct: 158 LFNEHGHDLGFKFLNVLRLWRLRRVSSMFA 187

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 59/209 (28%)

Query: 41  NLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHS 100
           +LS  ILP LG  S N+     ++++SP D +YR WE F+V+LV Y+AWV PFEF FL  
Sbjct: 26  SLSTGILPSLGARS-NRRVKLRRFVVSPYDHKYRIWEAFLVVLVVYTAWVSPFEFGFLR- 83

Query: 101 SPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFL 160
            P   L I D+IV+ FFAIDI +TFFV Y+ + + L+V + K+IA               
Sbjct: 84  KPRPPLSITDNIVNAFFAIDIIMTFFVGYLDKSTYLIVDDRKQIAF-------------- 129

Query: 161 GSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYL 220
                                                +Y+++WFL+D+ STIP EA    
Sbjct: 130 -------------------------------------KYLRSWFLLDLVSTIPSEA---- 148

Query: 221 ITGNKKAALSYSLLGILRFWRLRRVKQLF 249
               + ++ SY L  +LR WRLRRV  LF
Sbjct: 149 --AMRISSQSYGLFNMLRLWRLRRVGALF 175

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
297799798	801	hypothetical protein ARALYDRAFT_492645 [	0.698	0.248	0.555	3e-66
18415864	802	Potassium channel AKT2/3 [Arabidopsis th	0.698	0.248	0.543	1e-64
1172218	787	AKT3 [Arabidopsis thaliana] gi|1172220|g	0.628	0.227	0.580	2e-64
356528809	834	PREDICTED: potassium channel AKT2/3-like	0.687	0.235	0.513	7e-62
255577304	845	Potassium channel AKT2/3, putative [Rici	0.6	0.202	0.605	4e-61
357445481	830	Potassium channel [Medicago truncatula]	0.687	0.236	0.509	1e-59
356543430	831	PREDICTED: potassium channel AKT2/3-like	0.631	0.216	0.534	3e-59
4323296	832	pulvinus inward-rectifying channel for p	0.694	0.237	0.492	1e-58
2293112	807	potassium channel [Vicia faba]	0.561	0.198	0.530	5e-56
5834502	824	potassium channel [Nicotiana paniculata]	0.628	0.217	0.497	1e-55

>gi|297799798|ref|XP_002867783.1| hypothetical protein ARALYDRAFT_492645 [Arabidopsis lyrata subsp. lyrata] gi|297313619|gb|EFH44042.1| hypothetical protein ARALYDRAFT_492645 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/252 (55%), Positives = 162/252 (64%), Gaps = 53/252 (21%)

Query: 1   MEMNFIPYHHHLVNSLS-NHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQ 59
           ME+ +   H +L + +     H      REEE D +SLSL NLSKLILPPLGV+SYNQN 
Sbjct: 1   MELKYAASHCNLSSDMKLRRLHQHRGKGREEEYDASSLSLNNLSKLILPPLGVASYNQNH 60

Query: 60  TKSK-WIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFA 118
            +S  WIISPMDSRYRCWE +MVLLVAYSAWVYPFE AFL+SSP + L IAD+IVDLFFA
Sbjct: 61  IRSSGWIISPMDSRYRCWEFYMVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFA 120

Query: 119 IDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPL 178
           +DI LTFFVAYI +R+QLLVREPK+IA+R                               
Sbjct: 121 VDIVLTFFVAYIDQRTQLLVREPKQIAVR------------------------------- 149

Query: 179 DALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILR 238
                               Y+ TWFLMDVASTIPF+AIGYLITG  K  L+ +LLG+LR
Sbjct: 150 --------------------YLSTWFLMDVASTIPFDAIGYLITGTSKLNLTCNLLGLLR 189

Query: 239 FWRLRRVKQLFT 250
           FWRLRRVK LFT
Sbjct: 190 FWRLRRVKHLFT 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415864|ref|NP_567651.1| Potassium channel AKT2/3 [Arabidopsis thaliana] gi|44887668|sp|Q38898.1|AKT2_ARATH RecName: Full=Potassium channel AKT2/3 gi|1100898|gb|AAA97865.1| potassium channel [Arabidopsis thaliana] gi|110739319|dbj|BAF01572.1| potassium channel [Arabidopsis thaliana] gi|332659171|gb|AEE84571.1| Potassium channel AKT2/3 [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/252 (54%), Positives = 160/252 (63%), Gaps = 53/252 (21%)

Query: 1   MEMNFIPYHHHLVNSLS-NHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQ 59
           M++ +   H +L + +     H      REEE D +SLSL NLSKLILPPLGV+SYNQN 
Sbjct: 1   MDLKYSASHCNLSSDMKLRRFHQHRGKGREEEYDASSLSLNNLSKLILPPLGVASYNQNH 60

Query: 60  TKSK-WIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFA 118
            +S  WIISPMDSRYRCWE +MVLLVAYSAWVYPFE AFL+SSP + L IAD+IVDLFFA
Sbjct: 61  IRSSGWIISPMDSRYRCWEFYMVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFA 120

Query: 119 IDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPL 178
           +DI LTFFVAYI  R+QLLVREPK+IA+R                               
Sbjct: 121 VDIVLTFFVAYIDERTQLLVREPKQIAVR------------------------------- 149

Query: 179 DALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILR 238
                               Y+ TWFLMDVASTIPF+AIGYLITG     ++ +LLG+LR
Sbjct: 150 --------------------YLSTWFLMDVASTIPFDAIGYLITGTSTLNITCNLLGLLR 189

Query: 239 FWRLRRVKQLFT 250
           FWRLRRVK LFT
Sbjct: 190 FWRLRRVKHLFT 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1172218|gb|AAA96153.1| AKT3 [Arabidopsis thaliana] gi|1172220|gb|AAA96154.1| AKT3 [Arabidopsis thaliana] gi|2832670|emb|CAA16770.1| potassium channel protein AKT3 [Arabidopsis thaliana] gi|7269065|emb|CAB79175.1| potassium channel protein AKT3 [Arabidopsis thaliana]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 151/231 (65%), Gaps = 52/231 (22%)

Query: 21  HPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSK-WIISPMDSRYRCWETF 79
           H      REEE D +SLSL NLSKLILPPLGV+SYNQN  +S  WIISPMDSRYRCWE +
Sbjct: 7   HQHRGKGREEEYDASSLSLNNLSKLILPPLGVASYNQNHIRSSGWIISPMDSRYRCWEFY 66

Query: 80  MVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVR 139
           MVLLVAYSAWVYPFE AFL+SSP + L IAD+IVDLFFA+DI LTFFVAYI  R+QLLVR
Sbjct: 67  MVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVDIVLTFFVAYIDERTQLLVR 126

Query: 140 EPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARY 199
           EPK+IA+R                                                   Y
Sbjct: 127 EPKQIAVR---------------------------------------------------Y 135

Query: 200 IKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           + TWFLMDVASTIPF+AIGYLITG     ++ +LLG+LRFWRLRRVK LFT
Sbjct: 136 LSTWFLMDVASTIPFDAIGYLITGTSTLNITCNLLGLLRFWRLRRVKHLFT 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528809|ref|XP_003532990.1| PREDICTED: potassium channel AKT2/3-like [Glycine max]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 156/255 (61%), Gaps = 59/255 (23%)

Query: 3   MNFIPYHHHLVNSL-------SNHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSY 55
           MNF  Y+  L +SL        + H  + NHL EE+    S +LRN+SKLILPPLGVSS 
Sbjct: 4   MNFSSYNPQLASSLKKSYSKQEHDHSVERNHLNEEDHMSPSFNLRNISKLILPPLGVSSQ 63

Query: 56  NQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDL 115
           N   +K  WIISPMDSRYRCWE+FMVLLVAYSAWVYPFE AF+H S +K++YI D++VDL
Sbjct: 64  NPVNSKG-WIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNKEIYIVDTVVDL 122

Query: 116 FFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCI 175
           FF IDI LTFFVAYI R + LLVR+ KKI +R                            
Sbjct: 123 FFGIDIVLTFFVAYIDRTTHLLVRDKKKIVVR---------------------------- 154

Query: 176 QPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLG 235
                                  Y+ TWF+MD+ASTIP+EAIGYL TG +K  L Y LLG
Sbjct: 155 -----------------------YLSTWFVMDLASTIPYEAIGYLFTGRQKVGLPYFLLG 191

Query: 236 ILRFWRLRRVKQLFT 250
           +LRFWR+RRVKQ FT
Sbjct: 192 LLRFWRIRRVKQYFT 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577304|ref|XP_002529533.1| Potassium channel AKT2/3, putative [Ricinus communis] gi|223530981|gb|EEF32836.1| Potassium channel AKT2/3, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 152/223 (68%), Gaps = 52/223 (23%)

Query: 29  EEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSK-WIISPMDSRYRCWETFMVLLVAYS 87
           +EE DD SLSL +LSK+ILPPLGVSSYN N  +++ WIISPMDSRYR W +FMVLLVAYS
Sbjct: 39  QEEDDDTSLSLSSLSKIILPPLGVSSYNNNPIETRGWIISPMDSRYRWWGSFMVLLVAYS 98

Query: 88  AWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
           AWVYPFE AFL+SSP+K+LYIAD+IVDLFFAIDI LTFFVAYI  R+QL+VR+ KKIA R
Sbjct: 99  AWVYPFEVAFLNSSPNKRLYIADNIVDLFFAIDIVLTFFVAYIDSRTQLMVRDRKKIATR 158

Query: 148 KVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMD 207
                                                              Y+ TWFLMD
Sbjct: 159 ---------------------------------------------------YLSTWFLMD 167

Query: 208 VASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           VASTIPFEA+ YL TG +K ALSYSLLGILRFWRLRRVKQLFT
Sbjct: 168 VASTIPFEALAYLFTGTQKLALSYSLLGILRFWRLRRVKQLFT 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445481|ref|XP_003593018.1| Potassium channel [Medicago truncatula] gi|355482066|gb|AES63269.1| Potassium channel [Medicago truncatula]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 158/253 (62%), Gaps = 57/253 (22%)

Query: 1   MEMNFIPYH-HHLVNSLSNHHHPKNNHLREEE--GDDASLSLRNLSKLILPPLGVSSYNQ 57
           ME NF  Y+ H L +SL     P ++ ++EE+     +S +LRN+SKLILPPLGVS  N 
Sbjct: 1   MESNFSSYNPHDLASSLK--RKPHDHDVKEEDYYTSSSSFNLRNVSKLILPPLGVSKQNS 58

Query: 58  NQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFF 117
             +K  WIISPMDSRYRCWE+FMV+LVAYSAWVYPFE AF+HSS ++KLYI D+IVDLFF
Sbjct: 59  VSSKG-WIISPMDSRYRCWESFMVILVAYSAWVYPFEVAFMHSSTNRKLYIVDNIVDLFF 117

Query: 118 AIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQP 177
           A+DI LTFFVAY+   + LLVR+ KKI +R                              
Sbjct: 118 AVDIVLTFFVAYVDGTTHLLVRDSKKIVVR------------------------------ 147

Query: 178 LDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGIL 237
                                Y+ TWF+MDVASTIP+EAIGY +TG  K +L Y LLG+L
Sbjct: 148 ---------------------YLSTWFIMDVASTIPYEAIGYFLTGKHKLSLPYYLLGML 186

Query: 238 RFWRLRRVKQLFT 250
           RFWR+RRVKQ FT
Sbjct: 187 RFWRIRRVKQFFT 199

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543430|ref|XP_003540163.1| PREDICTED: potassium channel AKT2/3-like [Glycine max]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/232 (53%), Positives = 146/232 (62%), Gaps = 52/232 (22%)

Query: 19  HHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWET 78
           +H  +++HL EE     S +LRN+SKLILPPLGVSS N   +K  WIISPMDSRYRCWE+
Sbjct: 28  NHSGEHHHLNEEGYMSPSFNLRNISKLILPPLGVSSQNPVNSKG-WIISPMDSRYRCWES 86

Query: 79  FMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLV 138
           FMVLLVAYSAWVYPFE AF+H S + K+YIADS+VDLFF IDI LTFFVAYI R + LLV
Sbjct: 87  FMVLLVAYSAWVYPFEVAFMHKSSNMKIYIADSVVDLFFGIDIVLTFFVAYIDRTTHLLV 146

Query: 139 REPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVAR 198
           R+ KKI +R                                                   
Sbjct: 147 RDKKKIVVR--------------------------------------------------- 155

Query: 199 YIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           Y+ TWF+MD+ASTIP+EAIGYL TG +K  L Y LLG+ RFWR+RRVKQ FT
Sbjct: 156 YLSTWFVMDLASTIPYEAIGYLFTGKRKLGLPYFLLGLFRFWRIRRVKQYFT 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4323296|gb|AAD16278.1| pulvinus inward-rectifying channel for potassium SPICK1 [Samanea saman]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/258 (49%), Positives = 161/258 (62%), Gaps = 60/258 (23%)

Query: 1   MEMNFIPYHHHLVNSLS-------NHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVS 53
           M+ NF  Y  H ++SL        N H  K +H+ EE+    S +L+N+SKLILPPLGVS
Sbjct: 1   MKRNFSSYSLHWISSLKKSEGKRHNDHSKKPDHV-EEDDMSPSFNLQNVSKLILPPLGVS 59

Query: 54  SYNQNQTKSK-WIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSI 112
           SYN N  ++K WIISPMD+RYR W+  MVLLVAYSAWVYPFE AFLHSSP+K+++I D++
Sbjct: 60  SYNLNPVENKGWIISPMDTRYRYWQGVMVLLVAYSAWVYPFEVAFLHSSPNKEVFIVDNV 119

Query: 113 VDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCY 172
           VD+FFA+DI LTFFVA+I RR+QLLVR+ KKIA+R                         
Sbjct: 120 VDIFFAVDIVLTFFVAFIDRRTQLLVRDAKKIAVR------------------------- 154

Query: 173 SCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYS 232
                                     Y+ +WF++DVASTIP+EA+ Y+ITG  K  L   
Sbjct: 155 --------------------------YLSSWFVLDVASTIPYEALSYVITGKHKVGLVCY 188

Query: 233 LLGILRFWRLRRVKQLFT 250
           LLG+LRFWRLRR+KQ FT
Sbjct: 189 LLGMLRFWRLRRMKQFFT 206

Source: Samanea saman

Species: Samanea saman

Genus: Samanea

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2293112|emb|CAA71598.1| potassium channel [Vicia faba]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 139/213 (65%), Gaps = 53/213 (24%)

Query: 38  SLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAF 97
           +LRN+SKLILPPLGVS   +NQ  S+WIISPMDSRYRCWE+FMV+L+AYSAW YPFE AF
Sbjct: 22  NLRNVSKLILPPLGVS--RENQVYSRWIISPMDSRYRCWESFMVVLIAYSAWAYPFEVAF 79

Query: 98  LHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLH 157
           +HSSP++KLYI D+I+DLFFAIDI +TFF+A+I   + LLVR+ KKI +R          
Sbjct: 80  MHSSPNRKLYIVDNIIDLFFAIDIVMTFFLAFIDGTTHLLVRDSKKIVVR---------- 129

Query: 158 FFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAI 217
                                                    Y+ TWF+MDVASTIP+EAI
Sbjct: 130 -----------------------------------------YLSTWFIMDVASTIPYEAI 148

Query: 218 GYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           G+++TG  K  L Y LLG+LRFWR+RRVKQ FT
Sbjct: 149 GFILTGKHKLGLPYFLLGMLRFWRIRRVKQFFT 181

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5834502|dbj|BAA84085.1| potassium channel [Nicotiana paniculata]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 142/235 (60%), Gaps = 56/235 (23%)

Query: 17  SNHHHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKW-IISPMDSRYRC 75
            N H   NN     E     LS RNLSKLILPPLG + YNQNQT+ K  II+PMDSRYRC
Sbjct: 15  DNSHGSSNNSGTNSE----ELSFRNLSKLILPPLGSNGYNQNQTQQKGKIITPMDSRYRC 70

Query: 76  WETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQ 135
           WET MV++VAYS WV PFE AF+HS+P++ LY+AD++VDLFFA+DI LTFFVAYI   +Q
Sbjct: 71  WETLMVVMVAYSVWVCPFEIAFMHSNPNRALYLADNVVDLFFAVDIILTFFVAYIDTTTQ 130

Query: 136 LLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNAT 195
           LLVR+ ++IA R                                                
Sbjct: 131 LLVRDRRRIATR------------------------------------------------ 142

Query: 196 VARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
              YI TWF+MDVASTIPF+ +  + TG  +  +SYS+LG+LRFWRLRRVKQ FT
Sbjct: 143 ---YISTWFMMDVASTIPFDLLALIFTGKHQIGVSYSVLGMLRFWRLRRVKQFFT 194

Source: Nicotiana paniculata

Species: Nicotiana paniculata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.421	0.149	0.785	5.7e-65
TAIR|locus:2170468	677	KAT1 "potassium channel in Ara	0.410	0.172	0.521	2.1e-34
TAIR|locus:2005531	697	KAT2 "potassium channel in Ara	0.364	0.149	0.566	3.1e-34
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.396	0.128	0.470	3.3e-31
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.368	0.122	0.485	2.8e-30
TAIR|locus:2005524	662	KAT3 "AT4G32650" [Arabidopsis	0.382	0.164	0.409	1.1e-16
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.456	0.158	0.319	6.8e-13
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.287	0.099	0.361	4.9e-10
UNIPROTKB|J9JID4	958	KCNH6 "Potassium voltage-gated	0.291	0.086	0.294	7.8e-07
UNIPROTKB|Q9H252	994	KCNH6 "Potassium voltage-gated	0.291	0.083	0.294	8.5e-07

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 5.7e-65, Sum P(2) = 5.7e-65
 Identities = 95/121 (78%), Positives = 106/121 (87%)

Query:    28 REEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSK-WIISPMDSRYRCWETFMVLLVAY 86
             REEE D +SLSL NLSKLILPPLGV+SYNQN  +S  WIISPMDSRYRCWE +MVLLVAY
Sbjct:    29 REEEYDASSLSLNNLSKLILPPLGVASYNQNHIRSSGWIISPMDSRYRCWEFYMVLLVAY 88

Query:    87 SAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIAL 146
             SAWVYPFE AFL+SSP + L IAD+IVDLFFA+DI LTFFVAYI  R+QLLVREPK+IA+
Sbjct:    89 SAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVDIVLTFFVAYIDERTQLLVREPKQIAV 148

Query:   147 R 147
             R
Sbjct:   149 R 149

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 62/119 (52%), Positives = 77/119 (64%)

Query:    29 EEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSA 88
             EE   D       LS  +LP LG +  NQ+    K IISP + RYR WE ++VLLV YSA
Sbjct:    16 EEYNIDTIKQSSFLSADLLPSLG-ARINQSTKLRKHIISPFNPRYRAWEMWLVLLVIYSA 74

Query:    89 WVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
             W+ PF+FAF+    D  ++I D+IV+ FFAIDI LTFFVAY+   S LLV  PKKIA+R
Sbjct:    75 WICPFQFAFITYKKDA-IFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDSPKKIAIR 132

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
 Identities = 60/106 (56%), Positives = 75/106 (70%)

Query:    42 LSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS 101
             LS  +LP LG +  NQ+    K IISP D R+R WE ++V+LV YSAW+ PFEFAF+   
Sbjct:    29 LSADLLPSLG-ARINQSTKLRKHIISPFDPRFRGWEMWLVILVIYSAWICPFEFAFITYK 87

Query:   102 PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
              D  L+I D+IV+ FFAIDI LTFFVAY+   S LLV +PKKIA+R
Sbjct:    88 KDA-LFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLVDKPKKIAIR 132

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
 Identities = 55/117 (47%), Positives = 80/117 (68%)

Query:    34 DASLSLRNLSKLILPPLGVSSYNQNQTKSK---WIISPMDSRYRCWETFMVLLVAYSAWV 90
             + ++S  + SK +LPPLGV +  ++    K   +I+SP D RYR W+ F+V+LV Y+AW 
Sbjct:    36 EGTMSHYSFSKGLLPPLGVGATARSSRHIKLRCFIVSPFDPRYRAWDWFLVILVLYTAWA 95

Query:    91 YPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
              PFEF FL + P   L I D++V+ FFA+DI LTFFVA++ + + LLV +PK+IA R
Sbjct:    96 SPFEFGFLQT-PRAPLSILDNVVNGFFAVDIVLTFFVAFLDKATYLLVDDPKRIAWR 151

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
 Identities = 52/107 (48%), Positives = 72/107 (67%)

Query:    41 NLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHS 100
             +LS  ILP LG  S N+     ++++SP D +YR WE F+V+LV Y+AWV PFEF FL  
Sbjct:    26 SLSTGILPSLGARS-NRRVKLRRFVVSPYDHKYRIWEAFLVVLVVYTAWVSPFEFGFLRK 84

Query:   101 SPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
              P   L I D+IV+ FFAIDI +TFFV Y+ + + L+V + K+IA +
Sbjct:    85 -PRPPLSITDNIVNAFFAIDIIMTFFVGYLDKSTYLIVDDRKQIAFK 130

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/110 (40%), Positives = 64/110 (58%)

Query:    38 SLRNLSKLILPPLGVSSYNQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAF 97
             ++ ++S  +LP  G    + N +   +I+   D RYR WE F+V+LV YSAW   FE AF
Sbjct:    51 NITSVSSSLLPAFGTFIEDDNPSSKPFIVLHFDRRYRLWELFLVILVGYSAWASLFELAF 110

Query:    98 LHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALR 147
                + +  L   D +VD FFA+DI LTFFV+Y+   + L V + K IA R
Sbjct:   111 -EKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTTYLNVTDHKLIAKR 159

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 45/141 (31%), Positives = 69/141 (48%)

Query:    25 NHLREEEGDDASLSLRNLSKL-ILPPLGVSSYNQNQTKS----KWIISPMDSRYRCWETF 79
             +H  EE  DD S     LS       L  S + + +T      K+II P +  Y+ WE F
Sbjct:    12 DHEEEESNDDVSSRRGKLSLAETFRWLDSSEHRRIETDGHNDYKYIIHPKNRWYKAWEMF 71

Query:    80 MVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVR 139
             +++   YS+   P EF F    P++ L++ D +  + F +DI L FFVAY   ++   V 
Sbjct:    72 ILVWAIYSSLFTPMEFGFFRGLPER-LFVLDIVGQIAFLVDIVLQFFVAYRDTQTYRTVY 130

Query:   140 EPKKIALRKVAISAGKLHFFL 160
             +P +IA R +     K HF +
Sbjct:   131 KPTRIAFRYL-----KSHFLM 146

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query:    65 IISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLT 124
             I+ P +  Y+ W  F+++   YS++  P EF F    P+  L+I D    + F +DI LT
Sbjct:    74 IVHPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPEN-LFILDIAGQIAFLVDIVLT 132

Query:   125 FFVAYIHRRSQLLVREPKKIALR 147
             FFVAY   R+  ++ +   IALR
Sbjct:   133 FFVAYRDSRTYRMIYKRSSIALR 155

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

UNIPROTKB|J9JID4 KCNH6 "Potassium voltage-gated channel subfamily H member 6" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
 Identities = 28/95 (29%), Positives = 46/95 (48%)

Query:    63 KWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKK-----------LYIADS 111
             +W I         W+  ++LLV Y+A   P+  AFL S  D+            L + D 
Sbjct:   246 RWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLSDQDESRRGACSYTCSPLTVVDL 305

Query:   112 IVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIAL 146
             IVD+ F +DI + F   Y++   ++ V  P++IA+
Sbjct:   306 IVDIMFVVDIVINFRTTYVNTNDEV-VSHPRRIAV 339

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H252 KCNH6 "Potassium voltage-gated channel subfamily H member 6" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
 Identities = 28/95 (29%), Positives = 46/95 (48%)

Query:    63 KWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKK-----------LYIADS 111
             +W I         W+  ++LLV Y+A   P+  AFL S  D+            L + D 
Sbjct:   246 RWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLSDQDESRRGACSYTCSPLTVVDL 305

Query:   112 IVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIAL 146
             IVD+ F +DI + F   Y++   ++ V  P++IA+
Sbjct:   306 IVDIMFVVDIVINFRTTYVNTNDEV-VSHPRRIAV 339

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-95

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  296 bits (760), Expect = 8e-95
 Identities = 131/224 (58%), Positives = 146/224 (65%), Gaps = 52/224 (23%)

Query: 28  REEEGDDASLSLRNLSKLILPPLGVSSYNQNQTKS-KWIISPMDSRYRCWETFMVLLVAY 86
             EE D  SLSLRNLSK+ILPPLGV SYNQN   S  WIISPMDSRYR WET MV+LVAY
Sbjct: 15  TGEEDDSGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAY 74

Query: 87  SAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIAL 146
           SAWVYPFE AFL++SP + L IAD++VDLFFA+DI LTFFVAYI  R+QLLVR+ KKIA+
Sbjct: 75  SAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAV 134

Query: 147 RKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLM 206
                                                              RY+ TWFLM
Sbjct: 135 ---------------------------------------------------RYLSTWFLM 143

Query: 207 DVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFT 250
           DVASTIPF+A+ YLITG  K  LSYSLLG+LRFWRLRRVKQLFT
Sbjct: 144 DVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFT 187

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	99.96
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	99.72
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	99.58
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	98.76
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.58
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	96.65
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	94.7
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	93.92
KOG2301	1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	89.39

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.1e-38  Score=327.93  Aligned_cols=213  Identities=62%  Similarity=0.988  Sum_probs=186.0

Q ss_pred             CCCCCCCCCCcCCCcccccccccccCCCCCCCCCcccccc-cCcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 036074           20 HHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQ-TKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFL   98 (285)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~r~~~~~~lp~~g~~~~~q~~-~~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~   98 (285)
                      .......+++++.|+.++|+||+|+.+||++|.++++++. ...+|+|+|+|+++++||++++++++|++|++||+++|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~   86 (823)
T PLN03192          7 AGGGRGKGTGEEDDSGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL   86 (823)
T ss_pred             cccCCCCCCcccCCCcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            3445566688899999999999999999999999766555 456999999999999999999999999999999999998


Q ss_pred             ccCCCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCC
Q 036074           99 HSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPL  178 (285)
Q Consensus        99 ~~~~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (285)
                      ...+...+.++|.++|++|++||+++|++||++++++++|+|+++|+.                                
T Consensus        87 ~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~--------------------------------  134 (823)
T PLN03192         87 NASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAV--------------------------------  134 (823)
T ss_pred             CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHH--------------------------------
Confidence            766666789999999999999999999999999998899999999999                                


Q ss_pred             ccccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036074          179 DALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNS  258 (285)
Q Consensus       179 ~~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s  258 (285)
                                         ||+|+||++|++|++|++++.+++.++.+....+.+++++|++|+.|+.++++++++....
T Consensus       135 -------------------~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~  195 (823)
T PLN03192        135 -------------------RYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRF  195 (823)
T ss_pred             -------------------HHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                               9999999999999999999988887765555678899999999999999999988754321


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhcC
Q 036074          259 CMNPFRTVRNFIHFFFVLIYYLGCDS  284 (285)
Q Consensus       259 ~~n~~~~i~~lI~~~~ll~H~~aCl~  284 (285)
                      . ....++.++++++++++||.||++
T Consensus       196 ~-~~~~~~~kli~~~l~~~H~~aC~~  220 (823)
T PLN03192        196 S-YFWIRCARLLSVTLFLVHCAGCLY  220 (823)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 123357778889999999999986

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-34  Score=291.34  Aligned_cols=202  Identities=36%  Similarity=0.604  Sum_probs=165.4

Q ss_pred             CCCcccccccccccCCCC-CCCCCcc-cccccCcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC-------
Q 036074           31 EGDDASLSLRNLSKLILP-PLGVSSY-NQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS-------  101 (285)
Q Consensus        31 ~~~~~~~~~r~~~~~~lp-~~g~~~~-~q~~~~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~-------  101 (285)
                      .+.+...+...++...+| ..|..++ +|+..+++|||+|+|++++.||++++++++|++|+.|++++|....       
T Consensus        33 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d  112 (727)
T KOG0498|consen   33 KSAESTPSVNSLSLGLLPLGLGVPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCID  112 (727)
T ss_pred             ccccccCCcccccccccccccCcchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccccc
Confidence            344455666777777787 3454443 4555567999999999999999999999999999999999998874       


Q ss_pred             --CCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCCc
Q 036074          102 --PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLD  179 (285)
Q Consensus       102 --~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (285)
                        ....+.++|.++|++|++||+++|+|||+++.+.++|.|||+||.                                 
T Consensus       113 ~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~---------------------------------  159 (727)
T KOG0498|consen  113 GKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAK---------------------------------  159 (727)
T ss_pred             ccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHH---------------------------------
Confidence              335688999999999999999999999999999999999999999                                 


Q ss_pred             cccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036074          180 ALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITG-----NKKAALSYSLLGILRFWRLRRVKQLFTSKYG  254 (285)
Q Consensus       180 ~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g-----~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~  254 (285)
                                        ||+|+||++|++|++|+|++..+..+     .........++.+.||+||+|+.++++++++
T Consensus       160 ------------------rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k  221 (727)
T KOG0498|consen  160 ------------------RYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEK  221 (727)
T ss_pred             ------------------HHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              99999999999999999999765442     2122245688999999999999999999876


Q ss_pred             hhhccCc--hHHHHHHHHHHHHHHHHHHhhcC
Q 036074          255 WHNSCMN--PFRTVRNFIHFFFVLIYYLGCDS  284 (285)
Q Consensus       255 ~~~s~~n--~~~~i~~lI~~~~ll~H~~aCl~  284 (285)
                      .......  .+. +.++++++++++||.||+|
T Consensus       222 ~~~~v~~~awa~-~a~ll~~~~l~sH~~gc~w  252 (727)
T KOG0498|consen  222 DTGFVYETAWAG-AALLLSVYLLASHWAGCIW  252 (727)
T ss_pred             HhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            5432221  122 5567889999999999987

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.9e-29  Score=250.85  Aligned_cols=185  Identities=25%  Similarity=0.490  Sum_probs=157.1

Q ss_pred             ccccccccCCCCCCCCCcccccccC-cCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC-CCchhHhHHHHHH
Q 036074           37 LSLRNLSKLILPPLGVSSYNQNQTK-SKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS-PDKKLYIADSIVD  114 (285)
Q Consensus        37 ~~~r~~~~~~lp~~g~~~~~q~~~~-s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~-~~~~~~~~d~ivD  114 (285)
                      ...-|++.-|+|.     |.|+..| +..||-.+..++-.|||.++++.+|+|+.+||.++|.... .+..|..+|.++|
T Consensus       185 a~vm~Lg~DilPQ-----YrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVD  259 (971)
T KOG0501|consen  185 AEVMQLGSDILPQ-----YRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVD  259 (971)
T ss_pred             HHHHHhccccchh-----hhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhh
Confidence            3457888899998     5777666 4889999999999999999999999999999999999877 4567999999999


Q ss_pred             HHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCCccccccccchhhhhhh
Q 036074          115 LFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNA  194 (285)
Q Consensus       115 l~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  194 (285)
                      ++|++||+|||+|.|+-+++ ++|.|||.|..                                                
T Consensus       260 VIF~vDIvLNFHTTFVGPgG-EVvsdPkvIRm------------------------------------------------  290 (971)
T KOG0501|consen  260 VIFFVDIVLNFHTTFVGPGG-EVVSDPKVIRM------------------------------------------------  290 (971)
T ss_pred             hhhhhhhhhhcceeeecCCC-ceecChhHHhH------------------------------------------------
Confidence            99999999999999999986 79999999999                                                


Q ss_pred             hcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHH
Q 036074          195 TVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFF  274 (285)
Q Consensus       195 ~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~  274 (285)
                         +|+|+||++|++|++|+|.+..+-......+..++-|+..||+||-|+.+-.+...+...+.      +..++|++.
T Consensus       291 ---NYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~------LvLLlC~y~  361 (971)
T KOG0501|consen  291 ---NYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAV------LVLLLCVYG  361 (971)
T ss_pred             ---HHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHH
Confidence               99999999999999999998643222222345667888889999999998888776654432      345789999


Q ss_pred             HHHHHHhhcC
Q 036074          275 VLIYYLGCDS  284 (285)
Q Consensus       275 ll~H~~aCl~  284 (285)
                      +.+||+||+|
T Consensus       362 lvAHWlACiW  371 (971)
T KOG0501|consen  362 LVAHWLACIW  371 (971)
T ss_pred             HHHHHHHHhh
Confidence            9999999998

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=6e-18  Score=167.64  Aligned_cols=142  Identities=24%  Similarity=0.420  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhhhhhhccccCCC--chhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccce
Q 036074           80 MVLLVAYSAWVYPFEFAFLHSSPD--KKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLH  157 (285)
Q Consensus        80 ~vll~~y~a~~iPf~vaF~~~~~~--~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~  157 (285)
                      +.+.++|+.|+++.+.+|..-.+.  ..|..+|++.|++|++|++++.++||.++|  ++|+|-++...           
T Consensus         3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~-----------   69 (536)
T KOG0500|consen    3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRK-----------   69 (536)
T ss_pred             EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHH-----------
Confidence            345689999999999999875532  468899999999999999999999999987  89999999888           


Q ss_pred             eeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccch-hhHHHhhhhchHHHHHHhhcCCccchhhHHHHHH
Q 036074          158 FFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKT-WFLMDVASTIPFEAIGYLITGNKKAALSYSLLGI  236 (285)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt-~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~l  236 (285)
                                                              ||.++ .|.+|++|.+|+|++.... +      ..++.|+
T Consensus        70 ----------------------------------------hY~~s~~f~lD~l~liP~D~l~~~~-~------~~~~~r~  102 (536)
T KOG0500|consen   70 ----------------------------------------HYVHSTQFKLDVLSLIPLDLLLFKD-G------SASLERL  102 (536)
T ss_pred             ----------------------------------------HHHHhhhhhhhhhhhcchhHHhhcC-C------cchHHHH
Confidence                                                    99876 7999999999999986433 2      2356678


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHhhc
Q 036074          237 LRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCD  283 (285)
Q Consensus       237 LRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll~H~~aCl  283 (285)
                      .||+|+.|+.+++++.++.. ...|.| ++.++++++++++||.||+
T Consensus       103 nRllk~yRl~~F~~rTetrT-~~Pn~f-ri~~lv~~~~ilfHWNaCl  147 (536)
T KOG0500|consen  103 NRLLKIYRLFEFFDRTETRT-TYPNAF-RISKLVHYCLILFHWNACL  147 (536)
T ss_pred             HHHHHHHHHHHHHHHhcccc-CCchHH-HHHHHHHHHHHHHHHhhHH
Confidence            89999999999999987755 355666 5788999999999999996

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.58  E-value=1.2e-14  Score=147.28  Aligned_cols=158  Identities=16%  Similarity=0.367  Sum_probs=122.5

Q ss_pred             eEECCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--chhHhHHHHHHHHHHHHHh-hhheeeeeecCccEEEe
Q 036074           64 WIISPMD-SRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPD--KKLYIADSIVDLFFAIDIF-LTFFVAYIHRRSQLLVR  139 (285)
Q Consensus        64 ~iI~P~s-~~~r~We~~~vll~~y~a~~iPf~vaF~~~~~~--~~~~~~d~ivDl~F~iDI~-L~F~tay~~~~~~~lV~  139 (285)
                      -.|+|+. +.|..|-.++.+...|++|++|++.+|....++  ..|.+.|+++|+++++|++ ++.+.-|...|  .+|.
T Consensus       218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ik  295 (815)
T KOG0499|consen  218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DIIK  295 (815)
T ss_pred             cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eEEE
Confidence            3699998 899999999999999999999999999887644  3689999999999999995 57888888654  6898


Q ss_pred             ChhhhhhchhhhccccceeeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccch-hhHHHhhhhchHHHHH
Q 036074          140 EPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKT-WFLMDVASTIPFEAIG  218 (285)
Q Consensus       140 d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt-~F~iDlissiP~d~i~  218 (285)
                      |.+.+..                                                   ||+++ -|-+|++|.+|+|+++
T Consensus       296 ~kndtrk---------------------------------------------------~Yl~sr~FklDllsiLPldllY  324 (815)
T KOG0499|consen  296 DKNDTRK---------------------------------------------------HYLTSRKFKLDLLSILPLDLLY  324 (815)
T ss_pred             echHHHH---------------------------------------------------HHHHhhhhhhhHHhhhhHHHHH
Confidence            9888887                                                   99987 6999999999999986


Q ss_pred             HhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHhhc
Q 036074          219 YLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCD  283 (285)
Q Consensus       219 ~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll~H~~aCl  283 (285)
                      .. .|..      -++|+.|++++--..++++.++....+. ..+|-++ -..++++++|..||+
T Consensus       325 ~~-~G~~------p~wR~~R~lK~~sF~e~~~~Le~i~s~~-y~~RV~r-T~~YmlyilHinacv  380 (815)
T KOG0499|consen  325 LF-FGFN------PMWRANRMLKYTSFFEFNHHLESIMSKA-YIYRVIR-TTGYLLYILHINACV  380 (815)
T ss_pred             HH-hccc------hhhhhhhHHHHHHHHHHHHHHHHHhcch-hhhhhHH-HHHHHHHHHhhhHHH
Confidence            44 4421      2345555555555556666665544221 2234344 468899999999996

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=98.76  E-value=6.2e-09  Score=81.37  Aligned_cols=41  Identities=27%  Similarity=0.714  Sum_probs=38.4

Q ss_pred             CcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC
Q 036074           61 KSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS  101 (285)
Q Consensus        61 ~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~  101 (285)
                      ...|+|||+|.++.+||.+|+++++++++++|+.++|..+.
T Consensus        34 ~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~   74 (77)
T PF08412_consen   34 SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE   74 (77)
T ss_pred             CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence            34799999999999999999999999999999999998775

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.58  E-value=1.1e-07  Score=77.90  Aligned_cols=86  Identities=24%  Similarity=0.440  Sum_probs=51.7

Q ss_pred             cccch-hhHHHhhhhchHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Q 036074          198 RYIKT-WFLMDVASTIPFEAIGYLITGNKK-AALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFV  275 (285)
Q Consensus       198 ~Ylkt-~F~iDlissiP~d~i~~l~~g~~~-~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~l  275 (285)
                      +|+++ |.++|+++.+|..........+.. .....++++++|+.|+.|+.+.++...+........++.+.+++..+++
T Consensus        27 ~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  106 (200)
T PF00520_consen   27 RYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFI  106 (200)
T ss_dssp             CCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccccccccccccccccccccccccccccc
Confidence            88886 788999999999655433222210 0123455555666666665555544433332222345567777788888


Q ss_pred             HHHHHhhc
Q 036074          276 LIYYLGCD  283 (285)
Q Consensus       276 l~H~~aCl  283 (285)
                      +.|..||.
T Consensus       107 ~~~~~a~~  114 (200)
T PF00520_consen  107 VLLFFACI  114 (200)
T ss_dssp             HHHHHHHH
T ss_pred             ccccccch
Confidence            88888885

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.039  Score=56.09  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             chhHhHHHHHHHHHHHHHhhhhe
Q 036074          104 KKLYIADSIVDLFFAIDIFLTFF  126 (285)
Q Consensus       104 ~~~~~~d~ivDl~F~iDI~L~F~  126 (285)
                      ..+.+++.++-..|-+..+++|.
T Consensus       240 p~l~~vE~vCi~WFT~E~llR~~  262 (477)
T KOG3713|consen  240 PILTYVETVCIAWFTFEYLLRFL  262 (477)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999994

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.70  E-value=0.13  Score=56.81  Aligned_cols=64  Identities=14%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             CcCeEECCCChhHH---------HHHHHHHHHHHHHHHHhhhhhhccccCCCchhH---hHHHHHHHHHHHHHhhhh
Q 036074           61 KSKWIISPMDSRYR---------CWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLY---IADSIVDLFFAIDIFLTF  125 (285)
Q Consensus        61 ~s~~iI~P~s~~~r---------~We~~~vll~~y~a~~iPf~vaF~~~~~~~~~~---~~d~ivDl~F~iDI~L~F  125 (285)
                      -++++++|.++++.         ..|.+++++++.+++++..+= |..+.-...|+   .-++|.-.+|.+++.++-
T Consensus      1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer-p~i~~~s~EriFltlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER-PAIVEGSTERIFLTLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc-cccccCcceEEEEEecchHHHHHHHHHHHHHH
Confidence            35678999998764         467777888888888887652 33333222232   234888889999988875

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=93.92  E-value=0.16  Score=50.83  Aligned_cols=46  Identities=24%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             HHHhhhhchHHHHH-H-hhcC---C--ccchhhHHHHHHHHHHHHHHHHHHHH
Q 036074          205 LMDVASTIPFEAIG-Y-LITG---N--KKAALSYSLLGILRFWRLRRVKQLFT  250 (285)
Q Consensus       205 ~iDlissiP~d~i~-~-l~~g---~--~~~~~~~~lL~lLRL~RL~Rv~~lf~  250 (285)
                      ++|+++.+|+..-. . +...   .  .+.+.+..+||.+||.|.+|+.++..
T Consensus       290 iIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSR  342 (507)
T KOG1545|consen  290 IIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSR  342 (507)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeecc
Confidence            89999999986432 1 1111   1  12345677888888888888876553

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.39  E-value=0.96  Score=52.15  Aligned_cols=74  Identities=19%  Similarity=0.426  Sum_probs=53.1

Q ss_pred             ccc-chhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Q 036074          198 RYI-KTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVL  276 (285)
Q Consensus       198 ~Yl-kt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll  276 (285)
                      .|. ++|-++|.+-.. ++.+...    ......+++||.+|++|+.|+.+....+.....+..|+.+.+.+|..++++.
T Consensus       501 ~yF~~~~n~fD~~iv~-l~~~~~~----~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~  575 (1592)
T KOG2301|consen  501 NYFRRGWNIFDLIIVL-LSLLELL----LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIF  575 (1592)
T ss_pred             HHHhhhcchheEEEEe-hhhHHhc----ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            554 568899988777 6655432    1234567899999999999999999888887777777777666655444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 7e-07
 Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 62/289 (21%)

Query: 8   YHHHLVNSLSNHHHPKNN---HLREE-----EGDDASLSLRN-LSKLILPPLGVSSYNQN 58
           +HHH+      H +   +      +      +  D     ++ LSK  +  + +S    +
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 59  QTKSK-WIISPMDSRYRCWETFM--VLLVAYSAWVY-PFEFAFLHSSPDKKLYIADSIVD 114
            T    W +  +  +    + F+  VL + Y  ++  P +      S   ++YI     D
Sbjct: 63  GTLRLFWTL--LSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYI--EQRD 117

Query: 115 -LFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGK-----LHFFLG-SGYGAT 167
            L+    +F  + V           R    + LR+  +         +    G  G G T
Sbjct: 118 RLYNDNQVFAKYNV----------SRLQPYLKLRQALLELRPAKNVLID---GVLGSGKT 164

Query: 168 VVPCYSC--IQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNK 225
            V    C   +    + F     I WLN  +        +++       + + Y I  N 
Sbjct: 165 WVALDVCLSYKVQCKMDF----KIFWLN--LKNCNSPETVLE-----MLQKLLYQIDPNW 213

Query: 226 KAALSYSLLGILRFWRLR-RVKQLFTSK-YG---------WHNSCMNPF 263
            +   +S    LR   ++  +++L  SK Y           +    N F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 48/317 (15%), Positives = 92/317 (29%), Gaps = 85/317 (26%)

Query: 8   YHHHLVNSLSNHHHPKNNHLREEEGDDASLSLRNLSK--------LILPPLGVSSYNQNQ 59
            +    N  S   H  N  LR          LR L K        L+L            
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVL----------LN 252

Query: 60  TKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLYIADSIVDLFFAI 119
            ++    +  +    C     +LL      V      FL ++    + +      +    
Sbjct: 253 VQNAKAWNAFN--LSC----KILLTTRFKQV----TDFLSAATTTHISLDH--HSMTLTP 300

Query: 120 DIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLH-------FFLGSGYGA---TVV 169
           D   +  + Y+  R Q L RE      R+++I A  +         +           + 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 170 PCYSCIQPLD------ALG-FVKSTDIQ-------WLNATVARYIKTWFLMDVASTIPFE 215
              + ++P +       L  F  S  I        W +      +    +M V +    +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------VIKSDVMVVVN----K 410

Query: 216 AIGY-LITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIH--- 271
              Y L+    K   + S+  I        +K    ++Y  H S ++ +   + F     
Sbjct: 411 LHKYSLVEKQPK-ESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 272 --------FFFVLIYYL 280
                   F+  + ++L
Sbjct: 465 IPPYLDQYFYSHIGHHL 481

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.19
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.78
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.1
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	97.97
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	97.62
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	97.44
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.4

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.19  E-value=2.9e-11  Score=104.43  Aligned_cols=140  Identities=13%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccc-cCCCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhc
Q 036074           74 RCWETFMVLLVAYSAWVYPFEFAFLH-SSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAIS  152 (285)
Q Consensus        74 r~We~~~vll~~y~a~~iPf~vaF~~-~~~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~  152 (285)
                      ..||.++.++++++++.+..+..... +.....+..+|.++|++|.+|+++++.++.          +    ..      
T Consensus         8 ~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~------   67 (223)
T 1orq_C            8 PLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG----------D----PA------   67 (223)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HH------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HH------
Confidence            35999999999999998888754322 223456889999999999999999997752          0    12      


Q ss_pred             cccceeeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHH
Q 036074          153 AGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYS  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~  232 (285)
                                                                   +|+|+ +++|+++.+|++....  .+. +. ...+
T Consensus        68 ---------------------------------------------~y~~~-~iiDllailP~~~~~~--~~~-~~-~~~~   97 (223)
T 1orq_C           68 ---------------------------------------------GYVKK-TLYEIPALVPAGLLAL--IEG-HL-AGLG   97 (223)
T ss_dssp             ---------------------------------------------HHHHH-HHHHCTTHHHHHHHHH--HHH-HH-HTTT
T ss_pred             ---------------------------------------------HHHHH-hHHHHHHHHHHHHHHH--Hhc-ch-hHHH
Confidence                                                         89988 9999999999987643  111 00 0012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCchH--HHHHHHHHHHHHHHHHHhhc
Q 036074          233 LLGILRFWRLRRVKQLFTSKYGWHNSCMNPF--RTVRNFIHFFFVLIYYLGCD  283 (285)
Q Consensus       233 lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~--~~i~~lI~~~~ll~H~~aCl  283 (285)
                      .+|.+|++|+.|+.++++...+......+.+  .++..++..++++.|+.||.
T Consensus        98 ~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  150 (223)
T 1orq_C           98 LFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFA  150 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555554432111110000111  12444556667777888885

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.78  E-value=1.1e-08  Score=100.62  Aligned_cols=62  Identities=18%  Similarity=0.367  Sum_probs=45.9

Q ss_pred             CCCC-hhHHHHHHHHHHHHHHHHHHhhhhhh--cccc-------------------------CCCchhHhHHHHHHHHHH
Q 036074           67 SPMD-SRYRCWETFMVLLVAYSAWVYPFEFA--FLHS-------------------------SPDKKLYIADSIVDLFFA  118 (285)
Q Consensus        67 ~P~s-~~~r~We~~~vll~~y~a~~iPf~va--F~~~-------------------------~~~~~~~~~d~ivDl~F~  118 (285)
                      +|.| ...+.++.+++++++.+.++..++--  +..+                         .....+.++|.+++++|.
T Consensus       174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFt  253 (514)
T 2r9r_B          174 YPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFS  253 (514)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence            4664 56789999999999998888766532  2111                         013457889999999999


Q ss_pred             HHHhhhheee
Q 036074          119 IDIFLTFFVA  128 (285)
Q Consensus       119 iDI~L~F~ta  128 (285)
                      +|+++++.++
T Consensus       254 iE~ilR~~~~  263 (514)
T 2r9r_B          254 FEFLVRFFAC  263 (514)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9999999653

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.10  E-value=1.2e-05  Score=65.64  Aligned_cols=54  Identities=19%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCC-CchhHhHHHHHHHHHHHHHhhhhee
Q 036074           74 RCWETFMVLLVAYSAWVYPFEFAFLHSSP-DKKLYIADSIVDLFFAIDIFLTFFV  127 (285)
Q Consensus        74 r~We~~~vll~~y~a~~iPf~vaF~~~~~-~~~~~~~d~ivDl~F~iDI~L~F~t  127 (285)
                      +.+|.+++++++.+...+-.+---..+.. ...+..+|.++-.+|.+|.++++.+
T Consensus         6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~   60 (132)
T 1ors_C            6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK   60 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999998888887776643222211 2346789999999999999999954

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=97.97  E-value=2e-06  Score=78.59  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             cccc-hhhHHHhhhh-chHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Q 036074          198 RYIK-TWFLMDVAST-IPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFV  275 (285)
Q Consensus       198 ~Ylk-t~F~iDliss-iP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~l  275 (285)
                      +|.+ .|.++|+++. +|+..+.  ..+.    ...+++|++|++|+.|..+.++.+.+.....   ...+..++..+++
T Consensus        68 ~~~~~~~~i~Dl~~i~~p~~~~~--~~~~----~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~---~~~l~~~~~~~~~  138 (355)
T 3beh_A           68 VRDRTPKIAIDVLAVLVPLAAFL--LDGS----PDWSLYCAVWLLKPLRDSTFFPVLGRVLANE---ARNLIGVTTLFGV  138 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHH--SCCS----GGGGGGGGGGGSHHHHTCSSHHHHHHHHHHT---HHHHHHHHHHHHH
T ss_pred             eeccCcchHHHHHHHHHHHHHHH--hccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            4544 5899999998 6987643  2221    2235566666666665543333333222111   1234445556667


Q ss_pred             HHHHHhhc
Q 036074          276 LIYYLGCD  283 (285)
Q Consensus       276 l~H~~aCl  283 (285)
                      +.|+.||+
T Consensus       139 ~~~~~a~~  146 (355)
T 3beh_A          139 VLFAVALA  146 (355)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77888875

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=97.62  E-value=7.5e-05  Score=62.63  Aligned_cols=53  Identities=19%  Similarity=0.147  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCC-CchhHhHHHHHHHHHHHHHhhhhee
Q 036074           75 CWETFMVLLVAYSAWVYPFEFAFLHSSP-DKKLYIADSIVDLFFAIDIFLTFFV  127 (285)
Q Consensus        75 ~We~~~vll~~y~a~~iPf~vaF~~~~~-~~~~~~~d~ivDl~F~iDI~L~F~t  127 (285)
                      .||.++.++.+.++.++-.+.....+.. ...+..+|.++-++|.+|.++++..
T Consensus        22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~   75 (147)
T 2kyh_A           22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK   75 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888888888888877765543321 2246789999999999999999954

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=97.44  E-value=0.00016  Score=62.53  Aligned_cols=52  Identities=17%  Similarity=0.301  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccC-CCchhHhHHHHHHHHHHHHHhhhhe
Q 036074           74 RCWETFMVLLVAYSAWVYPFEFAFLHSS-PDKKLYIADSIVDLFFAIDIFLTFF  126 (285)
Q Consensus        74 r~We~~~vll~~y~a~~iPf~vaF~~~~-~~~~~~~~d~ivDl~F~iDI~L~F~  126 (285)
                      +.+|.++.++++.+++..-.+- ...+. .+..+..+|.+.-++|.+|++++..
T Consensus        12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~   64 (229)
T 4dxw_A           12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFI   64 (229)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999988765543 11111 1134677899999999999999983

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.40  E-value=0.00011  Score=65.55  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccc-CCCchhHhHHHHHHHHHHHHHhhhhe
Q 036074           74 RCWETFMVLLVAYSAWVYPFEFAFLHS-SPDKKLYIADSIVDLFFAIDIFLTFF  126 (285)
Q Consensus        74 r~We~~~vll~~y~a~~iPf~vaF~~~-~~~~~~~~~d~ivDl~F~iDI~L~F~  126 (285)
                      +.++.++.++++.++..+.++-.-... .....+..+|.++-++|.+|+++++.
T Consensus        30 ~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~   83 (285)
T 3rvy_A           30 SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIY   83 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888888876655311011 11234678899999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.0

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.00  E-value=1.1e-05  Score=64.39  Aligned_cols=113  Identities=17%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccC-CCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhcc
Q 036074           75 CWETFMVLLVAYSAWVYPFEFAFLHSS-PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISA  153 (285)
Q Consensus        75 ~We~~~vll~~y~a~~iPf~vaF~~~~-~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~  153 (285)
                      ..|..+.++++.+++++-.+---..++ ....+..+|.++-.+|.+|.++++..+ -++                     
T Consensus         7 ~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~-~~~---------------------   64 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS-GDP---------------------   64 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TST---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhC-Ccc---------------------
Confidence            578899999999999887775333222 123467899999999999999998532 110                     


Q ss_pred             ccceeeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHHH
Q 036074          154 GKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSL  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~l  233 (285)
                                                           |      +|.+ |-|+|+++.+|.-..... ++   .....+.
T Consensus        65 -------------------------------------~------~~~~-~~~iDl~ai~p~~~~~~~-~~---~~~~lr~   96 (132)
T d1orsc_          65 -------------------------------------A------GYVK-KTLYEIPALVPAGLLALI-EG---HLAGLGL   96 (132)
T ss_dssp             -------------------------------------T------TTTT-TCGGGTGGGSCHHHHHHH-HH---HHHHTTC
T ss_pred             -------------------------------------c------eeCC-cchHHHHHHHHHHHHHhh-hh---hHHHHHH
Confidence                                                 0      4443 457999999998654332 21   1233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Q 036074          234 LGILRFWRLRRVKQLFTSKYGWHN  257 (285)
Q Consensus       234 L~lLRL~RL~Rv~~lf~~~~~~~~  257 (285)
                      +|++|++|+.|+.+..++.....+
T Consensus        97 lR~~R~~R~lrl~~~~~~~~~ll~  120 (132)
T d1orsc_          97 FRLVRLLRFLRILLIISRGSKFLS  120 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777776666655443