Citrus Sinensis ID: 036083

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
MVVVKAQRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTINAFSKSNKRGRKVKDAENVEKEEEVEEEKLEKGKVSVESTSSGAELVDGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRGYQKNCCLFRIVFMTSHI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHHHcccccccccEEccccccccccEEccccEEEEEccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccEEEccEEEEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccHcHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHccccHHcccHcHcHHHHHHHHHHcccEEEccccccccccccccccEEEEEEEEEEEcccccccccEcEcccccccccccccccEEEEEEEEcccccccccccEEEEEccccccccccccccHHcHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEccEEEEEEccHcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccHHHEEEEEHccc
Coil and Loop (DISEMBL)
MVVVKAQRRVSARIQEKQREEKQREEKLRLVKRRVDLLTdeiignngaavddgdvddeekSTINAFSKsnkrgrkvkdaenvekEEEVEEEKLEKGKvsvestssgaelvdgnvvnfaeksdhAKVKETLRLFNKYYLQGVQEEEQRCCRivevdskaskksnkskskkgdvpedeaknkakrpdLKAVSKMMKNNEIlysakrigdipgvhvghqfysRAEMVAVGFHSHWLNGIDYMgmsykgdyknyIFPLAVAIVLSgmyeddldnaedvvytgqgghnltgdkrQIRDQKLERgnlalkncvdqdlpvrvirghdcsssytgkvytydGLYKVVKYWAEKGLSGFTVFKYRLRRlegqpilttnqvrfingrvpqsLSEIRGYQKNCCLFRIVFMTSHI
Flexible Loop (DISEMBL)
mvvvkaqrrvsariqekqreekqreeklrlvkrrvdlltdeiignngaavddgdvddEEKSTinafsksnkrgrkvkdaenvekeeeveeeklekgkvsvestssgaelvdgnvvnfaeksdhakvKETLRLFNKYYLQGVQEEEQRCCRIvevdskaskksnkskskkgdvpedeaknkakrpdlkavsKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTgqgghnltgdkrqIRDQKLErgnlalkncvdqdlpvrvirghdcsssytgkvytydGLYKVVKYWAEKGLSGFTVFKYRLRRLEgqpilttnqvrfinGRVPQSLSEIRGYQKNCCLFRIVFMTSHI
Low Complexity Region (SEG)
MVVVKAQRRVSARIQekqreekqreeklrlvkrrvdllTDEIIGnngaavddgdvddeeKSTINAFSKSNKRGRkvkdaenvekeeeveeeklekgkvsveSTSSGAELVDGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDskaskksnkskskkGDVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRGYQKNCCLFRIVFMTSHI
Disordered region (IsUnstruct)
*****************************LVKRRVDLLTDEIIGN******************************************************************GNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVE******************************************NEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGM***********************************GNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRGYQKNCCLFRIVFMT***
Disordered Region (DISOPRED)
**********************************************************************************************************************************RLFNKYYLQGVQE**********************************************SKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGH*****************NLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPI********************RGYQKNCCLFRIVFMTSHI
Disordered Region (DISEMBL)
*************************EKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTINAFS**************************************GAELVDGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVD****************************PDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRGYQKNCCLFRIVFMTSHI
Disordered Region (DISPRO)
MVVVK*QRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIG*****************************************************************************DHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGD*********AKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQ*RFINGRVPQSLSEIRGYQKNCCLFRIVFMTS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVVKAQRRVSARxxxxxxxxxxxxxxxxxxxxxVDLLTDEIIGNNGAAVDDGDVDDEEKSTINAFSKSNKRGxxxxxxxxxxxxxxxxxxxxxxxKVSVESTSSGAELVDGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRGYQKNCCLFRIVFMTSHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q8GZB6	624	Histone-lysine N-methyltr	yes	no	0.787	0.509	0.485	2e-95
Q9C5P4	669	Histone-lysine N-methyltr	no	no	0.423	0.255	0.463	3e-36
Q9FF80	670	Histone-lysine N-methyltr	no	no	0.433	0.261	0.472	1e-35
Q8VZ17	790	Histone-lysine N-methyltr	no	no	0.524	0.268	0.392	3e-34
Q93YF5	704	Histone-lysine N-methyltr	N/A	no	0.452	0.259	0.460	2e-33
O82175	794	Histone-lysine N-methyltr	no	no	0.554	0.282	0.384	8e-33
Q9T0G7	650	Probable histone-lysine N	no	no	0.440	0.273	0.410	1e-32
O22781	651	Histone-lysine N-methyltr	no	no	0.467	0.290	0.39	8e-31
Q9LVU3	415	YDG domain-containing pro	no	no	0.368	0.359	0.440	1e-26
Q9FHI0	328	YDG domain-containing pro	no	no	0.433	0.533	0.397	3e-26

>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/383 (48%), Positives = 241/383 (62%), Gaps = 65/383 (16%)

Query: 5   KAQRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTIN 64
           + +RR S R+Q+ +  +K  +EK RLV+ RV LL+D     +   VDD ++ ++E+  ++
Sbjct: 13  QTERRSSVRVQKVR--QKALDEKARLVQERVKLLSDR---KSEICVDDTELHEKEEENVD 67

Query: 65  AFSKSNKRGRKVKDAENVEKEEEVEEEKLEKGKVSVESTSSGAELVDGNVVNFAEKSDHA 124
              K               +    +   ++KGK  +  + +G +      VN      H 
Sbjct: 68  GSPK---------------RRSPPKLTAMQKGKQKLSVSLNGKD------VNL---EPHL 103

Query: 125 KVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEAKNKAKRP 184
           KV + LRLFNK YL  VQ                                     K  RP
Sbjct: 104 KVTKCLRLFNKQYLLCVQA------------------------------------KLSRP 127

Query: 185 DLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYK 244
           DLK V++M+K   ILY  K IGD+PG+ VGH+F+SRAEM AVGFH+HWLNGIDYM M Y+
Sbjct: 128 DLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYE 187

Query: 245 GDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALK 304
            +Y NY  PLAV+IV+SG YEDDLDNA+ V YTGQGGHNLTG+KRQI+DQ LERGNLALK
Sbjct: 188 KEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALK 247

Query: 305 NCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
           +C + ++PVRV RGH+C SSYT +VYTYDGLYKV K+WA+KG+SGFTV+KYRL+RLEGQP
Sbjct: 248 HCCEYNVPVRVTRGHNCKSSYTKRVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQP 307

Query: 365 ILTTNQVRFINGRVPQSLSEIRG 387
            LTT+QV F+ GR+P S SEI G
Sbjct: 308 ELTTDQVNFVAGRIPTSTSEIEG 330

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. The silencing mechanism via DNA CpNpG methylation requires the targeting of chromomethylase CMT3 to methylated histones, probably through an interaction with an HP1-like adapter. By its function, KYP is directly required for the maintenance of the DNA CpNpG and asymmetric methylation. Involved in the silencing of transposable elements.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 110/179 (61%), Gaps = 8/179 (4%)

Query: 187 KAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGD 246
           KA   +M N       KR+G +PG+ VG  F+SR EM  VG H   + GIDY+      D
Sbjct: 189 KAAGTLMSNGVRTNMKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYIISKAGSD 248

Query: 247 YKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDK-RQIRDQKLERGNLALKN 305
            ++    LA +IV SG YE +  + E ++Y+GQGG+    DK RQ  DQKLERGNLAL+N
Sbjct: 249 EES----LATSIVSSGRYEGEAQDPESLIYSGQGGN---ADKNRQASDQKLERGNLALEN 301

Query: 306 CVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
            + +   VRV+RG + ++S TGK+Y YDGLY + + W EKG SG   FKY+L R  GQP
Sbjct: 302 SLRKGNGVRVVRGEEDAASKTGKIYIYDGLYSISESWVEKGKSGCNTFKYKLVRQPGQP 360

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 9/184 (4%)

Query: 182 KRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGM 241
           KRPDLK+ S  M       + KR G +PGV +G  F+ R EM  VG HS  + GIDY+ +
Sbjct: 187 KRPDLKSGSTCMGRGVRTNTKKRPGIVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVV 246

Query: 242 SYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDK-RQIRDQKLERGN 300
             KG+ +    P+A +IV SG Y++D  N + ++YTGQGG+    DK +Q  DQKLERGN
Sbjct: 247 --KGETEEE--PIATSIVSSGYYDNDEGNPDVLIYTGQGGN---ADKDKQSSDQKLERGN 299

Query: 301 LALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRL 360
           LAL+  + +D  VRVIRG    +S+  K+Y YDGLY++ + W EKG SG   FKY+L R 
Sbjct: 300 LALEKSLRRDSAVRVIRGLK-EASHNAKIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRA 358

Query: 361 EGQP 364
            GQP
Sbjct: 359 PGQP 362

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/260 (39%), Positives = 138/260 (53%), Gaps = 48/260 (18%)

Query: 125 KVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEA-KNKAKR 183
           KVKETLRLF+    + +QE+E +                         PED+  K K  R
Sbjct: 272 KVKETLRLFHGVCRKILQEDEAK-------------------------PEDQRRKGKGLR 306

Query: 184 PDLKAVSKMMKNNEILYSAKRI-GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMS 242
            D +A + + +N + L S   I G++PGV VG +F  R E+  +G H     GIDYM   
Sbjct: 307 IDFEASTILKRNGKFLNSGVHILGEVPGVEVGDEFQYRMELNILGIHKPSQAGIDYMKY- 365

Query: 243 YKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR-----QIRDQKLE 297
             G  K     +A +IV SG Y+D LDN++ + YTGQGG+ +   K+     +  DQKL 
Sbjct: 366 --GKAK-----VATSIVASGGYDDHLDNSDVLTYTGQGGNVMQVKKKGEELKEPEDQKLI 418

Query: 298 RGNLALKNCVDQDLPVRVIRG-----HDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTV 352
            GNLAL   +++  PVRVIRG     HD S    G  Y YDGLY V KYW + G  G  V
Sbjct: 419 TGNLALATSIEKQTPVRVIRGKHKSTHDKSK---GGNYVYDGLYLVEKYWQQVGSHGMNV 475

Query: 353 FKYRLRRLEGQPILTTNQVR 372
           FK++LRR+ GQP L+  +V+
Sbjct: 476 FKFQLRRIPGQPELSWVEVK 495

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Seems to act preferentially on dsMRNA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 115/189 (60%), Gaps = 6/189 (3%)

Query: 176 EAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNG 235
           +     +RPDLKA + +M         KRIG+ PG+ VG  F+ R E+  VG H+  + G
Sbjct: 235 DGPGSGRRPDLKASNMLMTKGVRTNQTKRIGNAPGIEVGDIFFFRMELCLVGLHAPTMAG 294

Query: 236 IDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQK 295
           IDYM +    D +    PLAV+IV SG Y+DD  + + ++YTGQGG  +     Q+ DQK
Sbjct: 295 IDYMSVKLTMDEE----PLAVSIVSSGGYDDDGGDGDVLIYTGQGG--VQRKDGQVFDQK 348

Query: 296 LERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKY 355
           LERGNLAL+  V +   VRVIRG    +  TGK+Y YDGLYK+ + WAEK   G  VFKY
Sbjct: 349 LERGNLALEKSVHRANEVRVIRGVKDVAYPTGKIYIYDGLYKIQESWAEKNKVGCNVFKY 408

Query: 356 RLRRLEGQP 364
           +L R+ GQP
Sbjct: 409 KLLRVPGQP 417

Histone methyltransferase. Methylates in vitro both 'Lys-9' and 'Lys-27' of histone H3. Required for in vivo dimethylation of 'Lys-9'. H3 'Lys-9' methylation represents a specific tag for epigenetic control for plant development and transcriptional repression.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 146/276 (52%), Gaps = 52/276 (18%)

Query: 109 LVDGNVVNFAEKSDHA--KVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSK 166
           L +G + + +   D A  KVKET+RLF++   + +QEEE R                  +
Sbjct: 291 LSNGGLPSCSSSGDSARYKVKETMRLFHETCKKIMQEEEAR-----------------PR 333

Query: 167 SKKGDVPEDEAKNKAKRPDLKAV---SKMMKN-NEILYSAKRI-GDIPGVHVGHQFYSRA 221
            + G              + K V   SK++K+  + LYS  +I G +PGV VG +F  R 
Sbjct: 334 KRDGG-------------NFKVVCEASKILKSKGKNLYSGTQIIGTVPGVEVGDEFQYRM 380

Query: 222 EMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGG 281
           E+  +G H    +GIDYM    K D    +   A +IV SG Y D LDN++ ++YTGQGG
Sbjct: 381 ELNLLGIHRPSQSGIDYM----KDDGGELV---ATSIVSSGGYNDVLDNSDVLIYTGQGG 433

Query: 282 HNLTGDKRQ---IRDQKLERGNLALKNCVDQDLPVRVIRG---HDCSSSYTGKVYTYDGL 335
           +   G K+     +DQ+L  GNLALKN +++  PVRVIRG       SS   K Y YDGL
Sbjct: 434 N--VGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGL 491

Query: 336 YKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371
           Y V +YW E G  G  VFK++LRR+ GQP L   +V
Sbjct: 492 YLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEV 527

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 7/185 (3%)

Query: 205 IGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMY 264
           +G IPGV VG  F+ R E+  +G H H  +GID++  S   + +    P+A ++++SG Y
Sbjct: 204 VGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGE----PIATSVIVSGGY 259

Query: 265 EDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSS 324
           EDD D  + ++YTGQGG +  G  RQ   Q+LE GNLA++  +   + VRVIRG    + 
Sbjct: 260 EDDDDQGDVIMYTGQGGQDRLG--RQAEHQRLEGGNLAMERSMYYGIEVRVIRGLKYENE 317

Query: 325 YTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLS- 383
            + +VY YDGL+++V  W + G SGF VFKYRL R+EGQ  + ++ ++F        LS 
Sbjct: 318 VSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAEMGSSVLKFARTLKTNPLSV 377

Query: 384 EIRGY 388
             RGY
Sbjct: 378 RPRGY 382

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 11/200 (5%)

Query: 177 AKNKAKRPDLKAVSKMMKNNEIL-YSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNG 235
            + + +R D+ A   M      L Y    +G + GV VG  F+ R E+  +G H     G
Sbjct: 177 GQGRRRRSDMAAAYIMRDRGLWLNYDKHIVGPVTGVEVGDIFFYRMELCVLGLHGQTQAG 236

Query: 236 IDYMGM--SYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRD 293
           ID +    S  G+      P+A +IV+SG YEDD D  + +VYTG GG +     +Q  +
Sbjct: 237 IDCLTAERSATGE------PIATSIVVSGGYEDDEDTGDVLVYTGHGGQD--HQHKQCDN 288

Query: 294 QKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVF 353
           Q+L  GNL ++  +   + VRVIRG    +S + KVY YDGLYK+V +W   G SGF VF
Sbjct: 289 QRLVGGNLGMERSMHYGIEVRVIRGIKYENSISSKVYVYDGLYKIVDWWFAVGKSGFGVF 348

Query: 354 KYRLRRLEGQPILTTNQVRF 373
           K+RL R+EGQP++ +  +RF
Sbjct: 349 KFRLVRIEGQPMMGSAVMRF 368

Histone methyltransferase. Methylates 'Lys-9' and 'Lys-27' of histone H3, 'Lys-20' of H4, and cytosine. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Plays a central role in gene silencing.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9LVU3|YDG2_ARATH YDG domain-containing protein At5g47160 OS=Arabidopsis thaliana GN=At5g47160 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 12/161 (7%)

Query: 201 SAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVL 260
           S KRIG +PG+ VG +   +A +  +G H   ++GIDYM   YKG+ +     +A +IV 
Sbjct: 257 SQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYM---YKGNKE-----VATSIVS 308

Query: 261 S--GMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRG 318
           S    Y D   N + ++Y GQGG+  + D + I+DQKL  GNLAL N + +  PVRVIRG
Sbjct: 309 SEGNDYGDRFIN-DVMIYCGQGGNMRSKDHKAIKDQKLVGGNLALANSIKEKTPVRVIRG 367

Query: 319 HDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRR 359
                +  GK Y YDGLY+V KYW E+G  G  +FK++LRR
Sbjct: 368 ERRLDN-RGKDYVYDGLYRVEKYWEERGPQGNILFKFKLRR 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHI0|YDG1_ARATH YDG domain-containing protein At5g47150 OS=Arabidopsis thaliana GN=At5g47150 PE=2 SV=1

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 11/186 (5%)

Query: 183 RPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMS 242
           R DLK ++ + K  + + + KRIG +PG+++G  F  + E+  VG HS  + GIDY+ + 
Sbjct: 153 RIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDVFQYKTELRVVGLHSKPMCGIDYIKL- 211

Query: 243 YKGDYKNYIFPLAVAIVLS-GMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNL 301
             GD +     +  +IV S G   +D  N+  +VYTG+GG N+   +++  DQKL +GNL
Sbjct: 212 --GDDR-----ITTSIVASEGYGYNDTYNSGVMVYTGEGG-NVINKQKKTEDQKLVKGNL 263

Query: 302 ALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLE 361
           AL   + Q   VRVIRG +      GK Y YDGLY V +YW E+ + G +V+K++L R+ 
Sbjct: 264 ALATSMRQKSQVRVIRGEE-RLDRKGKRYVYDGLYMVEEYWVERDVRGKSVYKFKLCRIP 322

Query: 362 GQPILT 367
           GQ  LT
Sbjct: 323 GQLPLT 328

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
224131412	509	SET domain protein [Populus trichocarpa]	0.769	0.611	0.585	1e-114
356560426	720	PREDICTED: histone-lysine N-methyltransf	0.658	0.369	0.745	1e-111
255543539	640	histone-lysine n-methyltransferase, suvh	0.826	0.521	0.548	1e-111
449455932	689	PREDICTED: histone-lysine N-methyltransf	0.777	0.455	0.528	1e-107
224065292	525	SET domain protein [Populus trichocarpa]	0.561	0.432	0.704	1e-105
296082268	701	unnamed protein product [Vitis vinifera]	0.621	0.358	0.672	1e-105
357508435	862	Histone-lysine N-methyltransferase, H3 l	0.764	0.358	0.580	1e-102
356546156	646	PREDICTED: histone-lysine N-methyltransf	0.782	0.489	0.565	1e-102
356570263	603	PREDICTED: histone-lysine N-methyltransf	0.532	0.356	0.810	1e-101
225451615	556	PREDICTED: histone-lysine N-methyltransf	0.544	0.395	0.751	2e-96

>gi|224131412|ref|XP_002321078.1| SET domain protein [Populus trichocarpa] gi|222861851|gb|EEE99393.1| SET domain protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/393 (58%), Positives = 268/393 (68%), Gaps = 82/393 (20%)

Query: 4   VKAQRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTI 63
            + QRR S RI+ KQREEK+R     LV++RV +L ++                EEK  +
Sbjct: 9   TETQRRTSDRIKSKQREEKER-----LVRKRVQILDEQ----------------EEKGNL 47

Query: 64  NAFSKSNKRGRKVKDAENVEKEEEVEEEKL--------EKGKVSVESTSSGAELVDGNVV 115
                     RK  +A   E+EE V  EKL        EK K    S + G     GNVV
Sbjct: 48  ----------RKRSNANVTEEEEVVMAEKLLNQVLGSTEKQKEVTLSDAGGV----GNVV 93

Query: 116 NFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPED 175
              EKS   KVK+TLRLFNK+YLQ VQ+                                
Sbjct: 94  --TEKSATVKVKDTLRLFNKFYLQLVQK-------------------------------- 119

Query: 176 EAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNG 235
               K+KRPDLKA+SKMM+ N I+Y  K IGD+PG++VGH+FYSRAEMVAVGFHSHWLNG
Sbjct: 120 ----KSKRPDLKAISKMMEANAIMYPEKTIGDLPGINVGHRFYSRAEMVAVGFHSHWLNG 175

Query: 236 IDYMGMSYK-GDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQ 294
           IDYMG  YK G Y NY+FPLAVAIV+SGMYEDDLDNAEDV+YTGQGGH+LTG+KRQIRDQ
Sbjct: 176 IDYMGQFYKKGVYHNYMFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQ 235

Query: 295 KLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFK 354
           KLERGNLALKNCV+Q +PVRV+RGH+C+SSY GKVYTYDGLYKVV+YWAEKGLSGFTVFK
Sbjct: 236 KLERGNLALKNCVEQCVPVRVVRGHECASSYCGKVYTYDGLYKVVQYWAEKGLSGFTVFK 295

Query: 355 YRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           YRLRRLEGQP+LTTNQV+F  GRVPQS++EIRG
Sbjct: 296 YRLRRLEGQPLLTTNQVQFSYGRVPQSVAEIRG 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560426|ref|XP_003548493.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/271 (74%), Positives = 223/271 (82%), Gaps = 5/271 (1%)

Query: 117 FAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDE 176
             EKSD  KVKET+RLFNKYYL  VQEEE+RC           K + K+   K   P +E
Sbjct: 161 LGEKSDLLKVKETIRLFNKYYLHLVQEEEKRC----GKAEAERKAAKKASKSKKGAPPEE 216

Query: 177 AKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGI 236
           +K  AKRPDLKAVSKMM+NNEILY  KRIG+IPG+ VG+QFYSRAEMVAVGFHSHWLNGI
Sbjct: 217 SKTTAKRPDLKAVSKMMENNEILYPEKRIGNIPGIDVGYQFYSRAEMVAVGFHSHWLNGI 276

Query: 237 DYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKL 296
           DYMG SY   Y +Y  P+AVAIV+SGMYEDDLDNAEDVVYTGQGGHNLTGDKRQ RDQKL
Sbjct: 277 DYMGQSYAKAY-SYELPVAVAIVISGMYEDDLDNAEDVVYTGQGGHNLTGDKRQFRDQKL 335

Query: 297 ERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYR 356
           ERGNLALKNC +Q +PVRVIRGH+ SSSYTGKVYTYDGLYKVV YWA KG+SGFTV+K+R
Sbjct: 336 ERGNLALKNCSEQCVPVRVIRGHESSSSYTGKVYTYDGLYKVVNYWAGKGISGFTVYKFR 395

Query: 357 LRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           LRRLEGQP LTTNQV F  GRVPQSL+EI+G
Sbjct: 396 LRRLEGQPTLTTNQVYFTYGRVPQSLTEIQG 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543539|ref|XP_002512832.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] gi|223547843|gb|EEF49335.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/390 (54%), Positives = 268/390 (68%), Gaps = 56/390 (14%)

Query: 7   QRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDE---------IIGNNGAAVDDGDVDD 57
           +RRVSARIQ  +   +QR EK  LV++RV+LL +          +       VDD + + 
Sbjct: 27  KRRVSARIQATK---QQRAEKEELVRKRVELLDENGERNKKRANVFSRRRVNVDDVNEEH 83

Query: 58  EEKSTINAFSKSNKRGRKVKDAENVEKEEEVEEEKLEKGKVSVESTSSGAELVDGNVVNF 117
           + +       +      +V   +  EKE +V   +  K +V+     +  E + G V   
Sbjct: 84  KHEHEHEHEHEHQDEHEEVMVVKEKEKEMQVSSTEALKSQVA-----NVNEKIAGVV--- 135

Query: 118 AEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEA 177
            EKS +A+VKETLRLFNK+YL  VQ+                                  
Sbjct: 136 TEKSVNARVKETLRLFNKHYLHFVQK---------------------------------- 161

Query: 178 KNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGID 237
             KAKRPDLKA+SKM++ N I+Y  K+IGD+PG+ VGHQFYSRAEMVA+GFHSHWLNGID
Sbjct: 162 --KAKRPDLKAISKMIETNAIMYPEKKIGDLPGIDVGHQFYSRAEMVAIGFHSHWLNGID 219

Query: 238 YMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLE 297
           YMG+SY  +Y++Y FP+A+AIVLSGMYEDDLDNAEDV+YTGQGGH+LTG+KRQIRDQ +E
Sbjct: 220 YMGLSYSKEYRDYTFPIAIAIVLSGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQVME 279

Query: 298 RGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRL 357
           RGNLALKNCV+Q +PVRV+RGH+ +SSY+GKVYTYDGLYKVV+YWAEKG+SGFTV+KYRL
Sbjct: 280 RGNLALKNCVEQSMPVRVVRGHESTSSYSGKVYTYDGLYKVVQYWAEKGISGFTVYKYRL 339

Query: 358 RRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           RRLEGQP LTTNQV F+ GRVPQS+SEIRG
Sbjct: 340 RRLEGQPTLTTNQVHFVYGRVPQSISEIRG 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455932|ref|XP_004145704.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/407 (52%), Positives = 264/407 (64%), Gaps = 93/407 (22%)

Query: 6   AQRRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTINA 65
             RR SARI       K + EK  L ++RV+LL                   +E S+ + 
Sbjct: 55  PMRRTSARII------KMKAEKKLLARQRVELL-------------------DEPSSGSK 89

Query: 66  FSKSNKRGRKVKDAENVEKEEEVEEEK----------------LEKGK---------VSV 100
             K+N + +  ++  NV+  EEV E+K                + K K         V  
Sbjct: 90  RKKTNSKVKSKRNTPNVK--EEVREDKGEVVEDEAVVVPASKDVTKSKDGDARKPMEVCA 147

Query: 101 ESTSSGAELVDGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASK 160
               +G ++  GN+V   EKSDH KVKETLRLFNKYYL  VQ                  
Sbjct: 148 PEKRTGDDVGAGNMV---EKSDHVKVKETLRLFNKYYLHFVQ------------------ 186

Query: 161 KSNKSKSKKGDVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSR 220
                               +KRPDLKAVSKM++ NEIL   KRIG++PG+++GH+FYSR
Sbjct: 187 --------------------SKRPDLKAVSKMLETNEILNHEKRIGNVPGINIGHRFYSR 226

Query: 221 AEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQG 280
           AEMVAVGFHSHWLNGIDYMG+SY   Y NY FPLAVAIVLSGMYEDDLDNAEDV+YTGQG
Sbjct: 227 AEMVAVGFHSHWLNGIDYMGLSYSKKYSNYSFPLAVAIVLSGMYEDDLDNAEDVIYTGQG 286

Query: 281 GHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVK 340
           G NLTG+KRQIRDQK+ERGNLALKNC++Q +PVRV+RGH+ ++SY GK+YTYDGLYKV++
Sbjct: 287 GQNLTGNKRQIRDQKMERGNLALKNCIEQGVPVRVVRGHESATSYCGKLYTYDGLYKVIQ 346

Query: 341 YWAEKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           YWAEKG+SGFTVFK+RLRR+EGQ +LTTNQV+FI GRVP+S+SEIRG
Sbjct: 347 YWAEKGISGFTVFKFRLRRIEGQSLLTTNQVQFIYGRVPKSVSEIRG 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065292|ref|XP_002301759.1| SET domain protein [Populus trichocarpa] gi|222843485|gb|EEE81032.1| SET domain protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/264 (70%), Positives = 211/264 (79%), Gaps = 37/264 (14%)

Query: 125 KVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEAKNKAKRP 184
           KVK+TLRLFNK+YLQ VQ+                                    KAKRP
Sbjct: 2   KVKDTLRLFNKFYLQLVQK------------------------------------KAKRP 25

Query: 185 DLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSY- 243
           DLKA++KM + N  +Y  KRIGD+PG+ VGH+FYSRAEMVAVGFHSHWLNGIDYMG SY 
Sbjct: 26  DLKAITKMFEANATMYPEKRIGDLPGISVGHRFYSRAEMVAVGFHSHWLNGIDYMGQSYR 85

Query: 244 KGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLAL 303
           KG Y NY FPLAVAIV+SGMYEDDLDNAEDV+YTGQGGH+LTG+KRQIRDQKLERGNLAL
Sbjct: 86  KGVYHNYTFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQKLERGNLAL 145

Query: 304 KNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQ 363
           KNCV+Q +PVRV+RGH+C+SSY G+VYTYDGLYKVV+YWAEKGLSGFTVFKYRLRR+EGQ
Sbjct: 146 KNCVEQCVPVRVVRGHECASSYCGRVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRMEGQ 205

Query: 364 PILTTNQVRFINGRVPQSLSEIRG 387
           PILTTNQV+F  GRVPQS++EIRG
Sbjct: 206 PILTTNQVQFSYGRVPQSVAEIRG 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082268|emb|CBI21273.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/278 (67%), Positives = 215/278 (77%), Gaps = 27/278 (9%)

Query: 111 DGNVVNFAEKSDHAKVKETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKG 170
           D +  N  EKS +AKVKETLR FNKYYL  VQ                          KG
Sbjct: 160 DVSTTNVVEKSVYAKVKETLRTFNKYYLHFVQ--------------------------KG 193

Query: 171 DVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHS 230
           D PE + +  ++RPDLKA+SKMM+ N ILY  KR G IPGV VGHQF+SRAEMVAVGFHS
Sbjct: 194 DAPEKDGRQGSRRPDLKAISKMMETNAILYPEKRFGPIPGVDVGHQFFSRAEMVAVGFHS 253

Query: 231 HWLNGIDYMGMSY-KGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR 289
           HWLNGIDYMG SY + +Y  Y FPLAVAIVLSG YEDDLDN+EDVVYTGQGG+NL G+KR
Sbjct: 254 HWLNGIDYMGQSYNRREYSGYTFPLAVAIVLSGQYEDDLDNSEDVVYTGQGGNNLLGNKR 313

Query: 290 QIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSG 349
           Q++DQ +ERGNLALKNC++Q +PVRVIRGH  ++SY GKVYTYDGLYKVV+YWAEKG+SG
Sbjct: 314 QVQDQVMERGNLALKNCMEQCVPVRVIRGHKSANSYVGKVYTYDGLYKVVQYWAEKGVSG 373

Query: 350 FTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           FTVFKYRL+RLEGQPILTTNQV++  GRVP S+SEIRG
Sbjct: 374 FTVFKYRLKRLEGQPILTTNQVQYARGRVPNSISEIRG 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508435|ref|XP_003624506.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] gi|355499521|gb|AES80724.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/343 (58%), Positives = 237/343 (69%), Gaps = 34/343 (9%)

Query: 76  VKDAENVEKEEEVEEEKLEKGKVSVESTSSGAELVDGNVVNFAEKSDHAKVKETLRLFNK 135
           V + +  +K +   +EK E  +V  E  ++  E   G +   ++KS  AKVKET+R FNK
Sbjct: 108 VVEGKPTKKRKSASDEKRELMEVWNEKMAAETENAGGAL---SDKSSTAKVKETIRTFNK 164

Query: 136 YYLQGVQEEEQRCCRI-VEVDSKAS----------------------------KKSNKSK 166
           +YL  VQEEE R  +   E++ +                               K  +S 
Sbjct: 165 HYLHLVQEEEARVAKDNAEIEKRGGGKKSASKKKSPKKSPEKKSPKKSPGKKSTKVKRSA 224

Query: 167 SKKG--DVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMV 224
              G  D    E ++ AKRPDLKA++KMM+N EILY  KRIG IPG+ VG+QFYSRAEMV
Sbjct: 225 VGGGEKDAEPKEKQHSAKRPDLKAITKMMQNKEILYPDKRIGSIPGIEVGYQFYSRAEMV 284

Query: 225 AVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNL 284
           AVGFHSHWLNGID++G SY   Y     P+AVAIV+SGMYEDDLDNAEDVVYTGQGGHNL
Sbjct: 285 AVGFHSHWLNGIDFIGQSYSKTYPKLKLPVAVAIVISGMYEDDLDNAEDVVYTGQGGHNL 344

Query: 285 TGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAE 344
           TG+KRQI+DQKLERGNLALKNC DQ +PVRVIRGHD  SSYT KVYTYDGLYKV +YWAE
Sbjct: 345 TGNKRQIQDQKLERGNLALKNCWDQKVPVRVIRGHDSRSSYTRKVYTYDGLYKVDRYWAE 404

Query: 345 KGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           KG+SGFTV+K+RLRR+EGQP LTTNQV F  GRVPQS +EIRG
Sbjct: 405 KGISGFTVYKFRLRRVEGQPTLTTNQVYFTMGRVPQSTAEIRG 447

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546156|ref|XP_003541497.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/380 (56%), Positives = 249/380 (65%), Gaps = 64/380 (16%)

Query: 8   RRVSARIQEKQREEKQREEKLRLVKRRVDLLTDEIIGNNGAAVDDGDVDDEEKSTINAFS 67
           RR SARIQ  Q+ EK                  E++    A V    V  EEK       
Sbjct: 36  RRSSARIQALQKAEK------------------ELLARQKAEV----VVVEEKDNCENAV 73

Query: 68  KSNKRGRKVKDAENVEKEEEVEEEKLEKGKVSVESTSSGAELVDGNVVNFAEKSDHAKVK 127
           ++ KR R     E+V  EEEV  +K  KGKV  E  +   E   G +    EKSD  KVK
Sbjct: 74  RAKKRNRNSGGEESVAVEEEVVSKK-RKGKV--EEVNGKQENAGGGL---GEKSDPLKVK 127

Query: 128 ETLRLFNKYYLQGVQEEEQRCCRIVEVDSKASKKSNKSKSKKGDVPEDEAKNKAKRPDLK 187
           ET+RLFNKYYL  VQEE                                    AKRPDLK
Sbjct: 128 ETVRLFNKYYLHFVQEE------------------------------------AKRPDLK 151

Query: 188 AVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDY 247
           A+ KM+ NNE+LY  KRIGDIPG+ VG+QFYSR EMVAVGFHSHWL GIDYM  SY   Y
Sbjct: 152 AMGKMVDNNEVLYPGKRIGDIPGIEVGYQFYSRCEMVAVGFHSHWLKGIDYMPKSYANVY 211

Query: 248 KNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCV 307
             Y FP+AVAI+LSGMYEDDLDNA+DVVYTGQGGHNLTG+KRQIRDQKLE GNLALKNCV
Sbjct: 212 TTYEFPVAVAIILSGMYEDDLDNADDVVYTGQGGHNLTGNKRQIRDQKLEYGNLALKNCV 271

Query: 308 DQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILT 367
           +Q +P+RVIRGH  SSSY+GK+YTYDGLY VV+YWAEKG+SGFTV+K+RL R++GQP LT
Sbjct: 272 EQCVPIRVIRGHKSSSSYSGKIYTYDGLYNVVEYWAEKGISGFTVYKFRLSRVKGQPKLT 331

Query: 368 TNQVRFINGRVPQSLSEIRG 387
           TNQV F+NGRVP+SL+EI+G
Sbjct: 332 TNQVYFVNGRVPRSLTEIQG 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570263|ref|XP_003553309.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 194/216 (89%), Gaps = 1/216 (0%)

Query: 172 VPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSH 231
            P +E+K+ AKRPDLKA+SKMM+NNEILY  KRIG+IPG+ VG+QFYSRAEMVAVGFHSH
Sbjct: 95  APTEESKSTAKRPDLKAISKMMENNEILYPEKRIGNIPGIEVGYQFYSRAEMVAVGFHSH 154

Query: 232 WLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQI 291
           WLNGIDYMG SY     +Y  P+AVAIV+SGMYEDDLDNAEDVVYTGQGGHNLTGDKRQI
Sbjct: 155 WLNGIDYMGQSY-AKACSYELPVAVAIVISGMYEDDLDNAEDVVYTGQGGHNLTGDKRQI 213

Query: 292 RDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFT 351
           RDQKLERGNLALKNC +Q +PVRVIRGH+ SSSYTGKVYTYDGLYKVV YWAEKG+SGFT
Sbjct: 214 RDQKLERGNLALKNCAEQCVPVRVIRGHESSSSYTGKVYTYDGLYKVVNYWAEKGISGFT 273

Query: 352 VFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           V+K+RLRRLEGQP LTTNQV F  GRVPQ+L+EIRG
Sbjct: 274 VYKFRLRRLEGQPTLTTNQVYFTYGRVPQTLTEIRG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451615|ref|XP_002275754.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/221 (75%), Positives = 192/221 (86%), Gaps = 1/221 (0%)

Query: 168 KKGDVPEDEAKNKAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVG 227
            KGD PE + +  ++RPDLKA+SKMM+ N ILY  KR G IPGV VGHQF+SRAEMVAVG
Sbjct: 46  PKGDAPEKDGRQGSRRPDLKAISKMMETNAILYPEKRFGPIPGVDVGHQFFSRAEMVAVG 105

Query: 228 FHSHWLNGIDYMGMSY-KGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTG 286
           FHSHWLNGIDYMG SY + +Y  Y FPLAVAIVLSG YEDDLDN+EDVVYTGQGG+NL G
Sbjct: 106 FHSHWLNGIDYMGQSYNRREYSGYTFPLAVAIVLSGQYEDDLDNSEDVVYTGQGGNNLLG 165

Query: 287 DKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKG 346
           +KRQ++DQ +ERGNLALKNC++Q +PVRVIRGH  ++SY GKVYTYDGLYKVV+YWAEKG
Sbjct: 166 NKRQVQDQVMERGNLALKNCMEQCVPVRVIRGHKSANSYVGKVYTYDGLYKVVQYWAEKG 225

Query: 347 LSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEIRG 387
           +SGFTVFKYRL+RLEGQPILTTNQV++  GRVP S+SEIRG
Sbjct: 226 VSGFTVFKYRLKRLEGQPILTTNQVQYARGRVPNSISEIRG 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2159133	624	SUVH4 "SU(VAR)3-9 homolog 4" [	0.514	0.333	0.701	4e-85
TAIR|locus:2065988	790	SUVH6 "SU(VAR)3-9 homolog 6" [	0.507	0.259	0.405	2.6e-37
TAIR|locus:2175289	670	SUVH1 "SU(VAR)3-9 homolog 1" [	0.435	0.262	0.480	1.5e-35
TAIR|locus:2032592	669	SUVH3 "SU(VAR)3-9 homolog 3" [	0.423	0.255	0.469	2.4e-35
TAIR|locus:2063384	794	SUVH5 "SU(VAR)3-9 homolog 5" [	0.467	0.238	0.438	2.7e-35
TAIR|locus:2140827	650	SUVH9 "SU(VAR)3-9 homolog 9" [	0.495	0.307	0.402	1.5e-32
TAIR|locus:2051083	651	SUVH2 "SU(VAR)3-9 homolog 2" [	0.507	0.314	0.375	1.4e-29
TAIR|locus:2151997	328	AT5G47150 [Arabidopsis thalian	0.433	0.533	0.397	1.3e-27
TAIR|locus:2171574	415	AT5G47160 [Arabidopsis thalian	0.368	0.359	0.440	2.8e-27
TAIR|locus:2030953	693	SUVH7 "SU(VAR)3-9 homolog 7" [	0.383	0.223	0.370	1.2e-23

TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
 Identities = 146/208 (70%), Positives = 175/208 (84%)

Query:   180 KAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYM 239
             K  RPDLK V++M+K   ILY  K IGD+PG+ VGH+F+SRAEM AVGFH+HWLNGIDYM
Sbjct:   123 KLSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYM 182

Query:   240 GMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERG 299
              M Y+ +Y NY  PLAV+IV+SG YEDDLDNA+ V YTGQGGHNLTG+KRQI+DQ LERG
Sbjct:   183 SMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERG 242

Query:   300 NLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRR 359
             NLALK+C + ++PVRV RGH+C SSYT +VYTYDGLYKV K+WA+KG+SGFTV+KYRL+R
Sbjct:   243 NLALKHCCEYNVPVRVTRGHNCKSSYTKRVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKR 302

Query:   360 LEGQPILTTNQVRFINGRVPQSLSEIRG 387
             LEGQP LTT+QV F+ GR+P S SEI G
Sbjct:   303 LEGQPELTTDQVNFVAGRIPTSTSEIEG 330

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IDA

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IDA

GO:0008327 "methyl-CpG binding" evidence=IDA

GO:0010385 "double-stranded methylated DNA binding" evidence=IDA

GO:0010428 "methyl-CpNpG binding" evidence=IDA

GO:0010429 "methyl-CpNpN binding" evidence=IDA

GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
 Identities = 90/222 (40%), Positives = 129/222 (58%)

Query:   173 PEDEA-KNKAKRPDLKAVSKMMKNNEILYSAKRI-GDIPGVHVGHQFYSRAEMVAVGFHS 230
             PED+  K K  R D +A + + +N + L S   I G++PGV VG +F  R E+  +G H 
Sbjct:   295 PEDQRRKGKGLRIDFEASTILKRNGKFLNSGVHILGEVPGVEVGDEFQYRMELNILGIHK 354

Query:   231 HWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLT----G 286
                 GIDYM   Y G  K     +A +IV SG Y+D LDN++ + YTGQGG+ +     G
Sbjct:   355 PSQAGIDYM--KY-GKAK-----VATSIVASGGYDDHLDNSDVLTYTGQGGNVMQVKKKG 406

Query:   287 DK-RQIRDQKLERGNLALKNCVDQDLPVRVIRG-HDCSSSYT-GKVYTYDGLYKVVKYWA 343
             ++ ++  DQKL  GNLAL   +++  PVRVIRG H  +   + G  Y YDGLY V KYW 
Sbjct:   407 EELKEPEDQKLITGNLALATSIEKQTPVRVIRGKHKSTHDKSKGGNYVYDGLYLVEKYWQ 466

Query:   344 EKGLSGFTVFKYRLRRLEGQPILTTNQVRFINGRVPQSLSEI 385
             + G  G  VFK++LRR+ GQP L+  +V+    +  + L ++
Sbjct:   467 QVGSHGMNVFKFQLRRIPGQPELSWVEVKKSKSKYREGLCKL 508

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0008327 "methyl-CpG binding" evidence=IDA

GO:0010428 "methyl-CpNpG binding" evidence=IDA

GO:0010429 "methyl-CpNpN binding" evidence=IDA

TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 88/183 (48%), Positives = 115/183 (62%)

Query:   182 KRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGM 241
             KRPDLK+ S  M       + KR G +PGV +G  F+ R EM  VG HS  + GIDY+ +
Sbjct:   187 KRPDLKSGSTCMGRGVRTNTKKRPGIVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVV 246

Query:   242 SYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNL 301
               KG+ +    P+A +IV SG Y++D  N + ++YTGQGG N   DK Q  DQKLERGNL
Sbjct:   247 --KGETEEE--PIATSIVSSGYYDNDEGNPDVLIYTGQGG-NADKDK-QSSDQKLERGNL 300

Query:   302 ALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLE 361
             AL+  + +D  VRVIRG    +S+  K+Y YDGLY++ + W EKG SG   FKY+L R  
Sbjct:   301 ALEKSLRRDSAVRVIRGLK-EASHNAKIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRAP 359

Query:   362 GQP 364
             GQP
Sbjct:   360 GQP 362

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 84/179 (46%), Positives = 111/179 (62%)

Query:   187 KAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGD 246
             KA   +M N       KR+G +PG+ VG  F+SR EM  VG H   + GIDY+ +S  G 
Sbjct:   189 KAAGTLMSNGVRTNMKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYI-ISKAGS 247

Query:   247 YKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDK-RQIRDQKLERGNLALKN 305
              +     LA +IV SG YE +  + E ++Y+GQGG+    DK RQ  DQKLERGNLAL+N
Sbjct:   248 DEE---SLATSIVSSGRYEGEAQDPESLIYSGQGGN---ADKNRQASDQKLERGNLALEN 301

Query:   306 CVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
              + +   VRV+RG + ++S TGK+Y YDGLY + + W EKG SG   FKY+L R  GQP
Sbjct:   302 SLRKGNGVRVVRGEEDAASKTGKIYIYDGLYSISESWVEKGKSGCNTFKYKLVRQPGQP 360

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0005694 "chromosome" evidence=IDA

TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
 Identities = 92/210 (43%), Positives = 123/210 (58%)

Query:   174 EDEAK-NKAKRPDLKAV---SKMMKNN-EILYSAKRI-GDIPGVHVGHQFYSRAEMVAVG 227
             E+EA+  K    + K V   SK++K+  + LYS  +I G +PGV VG +F  R E+  +G
Sbjct:   327 EEEARPRKRDGGNFKVVCEASKILKSKGKNLYSGTQIIGTVPGVEVGDEFQYRMELNLLG 386

Query:   228 FHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGD 287
              H    +GIDYM    K D    +   A +IV SG Y D LDN++ ++YTGQGG+   G 
Sbjct:   387 IHRPSQSGIDYM----KDDGGELV---ATSIVSSGGYNDVLDNSDVLIYTGQGGN--VGK 437

Query:   288 KRQI---RDQKLERGNLALKNCVDQDLPVRVIRG---HDCSSSYTGKVYTYDGLYKVVKY 341
             K+     +DQ+L  GNLALKN +++  PVRVIRG       SS   K Y YDGLY V +Y
Sbjct:   438 KKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEY 497

Query:   342 WAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371
             W E G  G  VFK++LRR+ GQP L   +V
Sbjct:   498 WEETGSHGKLVFKFKLRRIPGQPELPWKEV 527

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS;IDA

GO:0010216 "maintenance of DNA methylation" evidence=IGI

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0031048 "chromatin silencing by small RNA" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 85/211 (40%), Positives = 124/211 (58%)

Query:   183 RPDLKA--VSKMMKNNEILYSA-KRI-GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDY 238
             R D KA     MM++  +  +  KRI G IPGV VG  F+ R E+  +G H H  +GID+
Sbjct:   178 RADGKAGKAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDF 237

Query:   239 MGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLER 298
             +  S   + +    P+A ++++SG YEDD D  + ++YTGQGG +  G  RQ   Q+LE 
Sbjct:   238 LTGSLSSNGE----PIATSVIVSGGYEDDDDQGDVIMYTGQGGQDRLG--RQAEHQRLEG 291

Query:   299 GNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLR 358
             GNLA++  +   + VRVIRG    +  + +VY YDGL+++V  W + G SGF VFKYRL 
Sbjct:   292 GNLAMERSMYYGIEVRVIRGLKYENEVSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLE 351

Query:   359 RLEGQPILTTNQVRFINGRVPQSLS-EIRGY 388
             R+EGQ  + ++ ++F        LS   RGY
Sbjct:   352 RIEGQAEMGSSVLKFARTLKTNPLSVRPRGY 382

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0009294 "DNA mediated transformation" evidence=IMP

TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 80/213 (37%), Positives = 115/213 (53%)

Query:   178 KNKAKRPDLKAVSKMMKNNEIL-YSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGI 236
             + + +R D+ A   M      L Y    +G + GV VG  F+ R E+  +G H     GI
Sbjct:   178 QGRRRRSDMAAAYIMRDRGLWLNYDKHIVGPVTGVEVGDIFFYRMELCVLGLHGQTQAGI 237

Query:   237 DYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKL 296
             D +        +    P+A +IV+SG YEDD D  + +VYTG GG +     +Q  +Q+L
Sbjct:   238 DCLTAERSATGE----PIATSIVVSGGYEDDEDTGDVLVYTGHGGQD--HQHKQCDNQRL 291

Query:   297 ERGNLALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYR 356
               GNL ++  +   + VRVIRG    +S + KVY YDGLYK+V +W   G SGF VFK+R
Sbjct:   292 VGGNLGMERSMHYGIEVRVIRGIKYENSISSKVYVYDGLYKIVDWWFAVGKSGFGVFKFR 351

Query:   357 LRRLEGQPILTTNQVRFING-RVPQSLSEIRGY 388
             L R+EGQP++ +  +RF    R   S+    GY
Sbjct:   352 LVRIEGQPMMGSAVMRFAQTLRNKPSMVRPTGY 384

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=IMP;TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2151997 AT5G47150 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 74/186 (39%), Positives = 111/186 (59%)

Query:   183 RPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMS 242
             R DLK ++ + K  + + + KRIG +PG+++G  F  + E+  VG HS  + GIDY+ + 
Sbjct:   153 RIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDVFQYKTELRVVGLHSKPMCGIDYIKL- 211

Query:   243 YKGDYKNYIFPLAVAIVLSGMYE-DDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNL 301
               GD +     +  +IV S  Y  +D  N+  +VYTG+GG N+   +++  DQKL +GNL
Sbjct:   212 --GDDR-----ITTSIVASEGYGYNDTYNSGVMVYTGEGG-NVINKQKKTEDQKLVKGNL 263

Query:   302 ALKNCVDQDLPVRVIRGHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLE 361
             AL   + Q   VRVIRG +      GK Y YDGLY V +YW E+ + G +V+K++L R+ 
Sbjct:   264 ALATSMRQKSQVRVIRGEE-RLDRKGKRYVYDGLYMVEEYWVERDVRGKSVYKFKLCRIP 322

Query:   362 GQPILT 367
             GQ  LT
Sbjct:   323 GQLPLT 328

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042393 "histone binding" evidence=IEA

TAIR|locus:2171574 AT5G47160 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/161 (44%), Positives = 98/161 (60%)

Query:   201 SAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVL 260
             S KRIG +PG+ VG +   +A +  +G H   ++GIDYM   YKG+ +     +A +IV 
Sbjct:   257 SQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYM---YKGNKE-----VATSIVS 308

Query:   261 S--GMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRG 318
             S    Y D   N + ++Y GQGG+  + D + I+DQKL  GNLAL N + +  PVRVIRG
Sbjct:   309 SEGNDYGDRFIN-DVMIYCGQGGNMRSKDHKAIKDQKLVGGNLALANSIKEKTPVRVIRG 367

Query:   319 HDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRR 359
                  +  GK Y YDGLY+V KYW E+G  G  +FK++LRR
Sbjct:   368 ERRLDN-RGKDYVYDGLYRVEKYWEERGPQGNILFKFKLRR 407

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042393 "histone binding" evidence=IEA

TAIR|locus:2030953 SUVH7 "SU(VAR)3-9 homolog 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 60/162 (37%), Positives = 93/162 (57%)

Query:   203 KRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSG 262
             +RIG +PG+HVG  FY   EM  VG H     GID+   + +   + +    A+ +V +G
Sbjct:   224 RRIGAVPGIHVGDIFYYWGEMCLVGLHKSNYGGIDFFTAA-ESAVEGHA---AMCVVTAG 279

Query:   263 MYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCS 322
              Y+ + +  + ++Y+GQGG ++ G+ R   DQ+++ GNLAL+  V +   VRV+RG    
Sbjct:   280 QYDGETEGLDTLIYSGQGGTDVYGNAR---DQEMKGGNLALEASVSKGNDVRVVRGVIHP 336

Query:   323 SSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
                  K+Y YDG+Y V K+W   G SGF  F+++L R   QP
Sbjct:   337 HENNQKIYIYDGMYLVSKFWTVTGKSGFKEFRFKLVRKPNQP 378

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
pfam02182	154	pfam02182, YDG_SRA, YDG/SRA domain	3e-68
smart00466	155	smart00466, SRA, SET and RING finger associated do	2e-53

>gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain

 Score =  212 bits (542), Expect = 3e-68
 Identities = 87/163 (53%), Positives = 106/163 (65%), Gaps = 11/163 (6%)

Query: 203 KRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSG 262
           KRIG +PGV VG  F+ R E+  VG H     GID M        K+    +A +IV SG
Sbjct: 1   KRIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGM--------KSEGGTIATSIVSSG 52

Query: 263 MYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCS 322
            YEDD DN + +VYTGQGG++L+G+K Q  DQKLERGNLAL N   +  PVRVIRG    
Sbjct: 53  GYEDDEDNGDVLVYTGQGGNDLSGNK-QSEDQKLERGNLALANSCRKGNPVRVIRGEKGP 111

Query: 323 SSY--TGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQ 363
           SS+   G +Y YDGLY+V KYW EKG SGF VFK++L R+ GQ
Sbjct: 112 SSHAPKGGIYRYDGLYRVEKYWREKGKSGFKVFKFKLVRIPGQ 154

The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154

>gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain

 Score =  174 bits (443), Expect = 2e-53
 Identities = 75/163 (46%), Positives = 98/163 (60%), Gaps = 10/163 (6%)

Query: 202 AKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLS 261
            +  G +PGV VG  F+ R E+  VG H     GID +    + D        A ++V S
Sbjct: 2   KRIFGPVPGVEVGDIFFYRVELCLVGLHRPTQAGIDGL----ESDEGEPG---ATSVVSS 54

Query: 262 GMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDC 321
           G YEDD D+ + ++YTGQGG ++T    Q  DQKLERGNLAL+    + +PVRV+RG   
Sbjct: 55  GGYEDDTDDGDVLIYTGQGGRDMTH--GQPEDQKLERGNLALEASCRKGIPVRVVRGMKG 112

Query: 322 SSSYT-GKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQ 363
            S Y  GK Y YDGLY++V YW E G SGF VFK++L R+ GQ
Sbjct: 113 YSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
smart00466	155	SRA SET and RING finger associated domain. Domain	100.0
PF02182	155	SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This	100.0
COG3440	301	Predicted restriction endonuclease [Defense mechan	96.04

>smart00466 SRA SET and RING finger associated domain

Probab=100.00  E-value=2.2e-62  Score=439.77  Aligned_cols=153  Identities=48%  Similarity=0.805  Sum_probs=144.6

Q ss_pred             CCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEccCC
Q 036083          202 AKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGG  281 (404)
Q Consensus       202 ~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGqGG  281 (404)
                      .++||+||||+|||||+||+|||++|||+++|+||||++.+.       +.++|+|||+||+|+||+|+||+|+|||+||
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~-------~~~~A~SIV~SggYedd~D~gd~liYtG~gg   74 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADE-------GEPGATSVVSSGGYEDDTDDGDVLIYTGQGG   74 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccC-------CCccEEEEEECCCccCcccCCCEEEEEccCC
Confidence            579999999999999999999999999999999999987542       3689999999999999999999999999999


Q ss_pred             CCCCCCccccccccccchhHHHHHhhhCCCCEEEEeccCCCCCCCC-ceeEecceEEEEEEEEeecCcceEEEEEEEEEe
Q 036083          282 HNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTG-KVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRL  360 (404)
Q Consensus       282 ~d~~g~krQ~~DQkLerGNlAL~nS~~~g~PVRVIRG~k~~s~~ap-kgYRYDGLYkVv~yW~EkGk~G~~V~KFkL~Rl  360 (404)
                      ++.  +++|+.||+|++||+||++||++++|||||||+++.+.++| ++|||||||+|++||.++|++||.||||+|+|+
T Consensus        75 ~~~--~~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~  152 (155)
T smart00466       75 RDM--THGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRI  152 (155)
T ss_pred             ccC--CCCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeC
Confidence            986  45789999999999999999999999999999998777888 699999999999999999999999999999999


Q ss_pred             CCC
Q 036083          361 EGQ  363 (404)
Q Consensus       361 pGQ  363 (404)
                      |||
T Consensus       153 ~gQ  155 (155)
T smart00466      153 PGQ  155 (155)
T ss_pred             CCC
Confidence            998

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain

Probab=100.00  E-value=2.8e-60  Score=424.62  Aligned_cols=153  Identities=59%  Similarity=0.912  Sum_probs=125.5

Q ss_pred             CCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEccCC
Q 036083          202 AKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGG  281 (404)
Q Consensus       202 ~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGqGG  281 (404)
                      +|+|||||||+|||||++|+||+++|+|+++|+|||+++..+        .++|+|||+||+|+||+|+||+|||||+||
T Consensus         1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g--------~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg   72 (155)
T PF02182_consen    1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEG--------GPVAYSIVLSGGYEDDEDNGDVLIYTGQGG   72 (155)
T ss_dssp             -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTTE--------SEEEEEEEESSSSTTCEECSSEEEEE-SSS
T ss_pred             CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCCC--------ceeeEEEEECCCcccccCCCCEEEEEcCCC
Confidence            478999999999999999999999999999999999987653        278999999999999999999999999999


Q ss_pred             CCCCCCccccccccccchhHHHHHhhhCCCCEEEEeccCCCCCCCCc-e-eEecceEEEEEEEEeecCcceEEEEEEEEE
Q 036083          282 HNLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTGK-V-YTYDGLYKVVKYWAEKGLSGFTVFKYRLRR  359 (404)
Q Consensus       282 ~d~~g~krQ~~DQkLerGNlAL~nS~~~g~PVRVIRG~k~~s~~apk-g-YRYDGLYkVv~yW~EkGk~G~~V~KFkL~R  359 (404)
                      ++..+++ |..||+|++||+||.+|+++++|||||||+++.+.|+|+ + |||||||+|++||.++|++|+.||||+|+|
T Consensus        73 ~~~~~~~-~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R  151 (155)
T PF02182_consen   73 NDLSGNK-QPKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVR  151 (155)
T ss_dssp             B--TTT--B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred             ccccccc-ccccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEE
Confidence            9987655 999999999999999999999999999999999999994 6 999999999999999999999999999999


Q ss_pred             eCCC
Q 036083          360 LEGQ  363 (404)
Q Consensus       360 lpGQ  363 (404)
                      +|||
T Consensus       152 ~~gQ  155 (155)
T PF02182_consen  152 LPGQ  155 (155)
T ss_dssp             -TSS
T ss_pred             CCCC
Confidence            9998

Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=96.04  E-value=3.5e-05  Score=76.69  Aligned_cols=139  Identities=12%  Similarity=-0.054  Sum_probs=113.4

Q ss_pred             Cccccceecc-HHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEccCCCCCCCCc
Q 036083          210 GVHVGHQFYS-RAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDK  288 (404)
Q Consensus       210 GV~VGD~F~~-R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGqGG~d~~g~k  288 (404)
                      ++.++..+-. +.+..-.+.|-|++.++.+.+.+           .+.+++.+|+|+++.+.+++..||+-|+....  .
T Consensus        10 sf~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~~-----------~~~~~~n~~~~~~e~~~~f~~l~~~~g~~~~~--~   76 (301)
T COG3440          10 SFSQRNASLKIFGGNREAAPHKPILLLDVGRKIS-----------TFFITENQGIYETELIEPFIQLWSFFGPKLQK--Y   76 (301)
T ss_pred             chhhhhhhhhhcccccccCCcCceeehhhHhhhh-----------cccccccccccchhccchHHHHHhhcCccccc--C
Confidence            5555666655 66777889999999999865432           46799999999999999999999999986322  2


Q ss_pred             cccccccccchhHHHHHhhhCCCCEEEEeccCCCCCCCC-ceeEecceEEEEEEEEeecCcceEEEEEEEEEeC
Q 036083          289 RQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCSSSYTG-KVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLE  361 (404)
Q Consensus       289 rQ~~DQkLerGNlAL~nS~~~g~PVRVIRG~k~~s~~ap-kgYRYDGLYkVv~yW~EkGk~G~~V~KFkL~Rlp  361 (404)
                      .+..-+.+..|+.+++.+++.+-|-++||++.....+.| ..|-|-|+|.+-..|.++.-.+++++.|...+++
T Consensus        77 ~~~~p~~~l~~d~~~h~~~k~~~~~l~~~~~~~~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~~  150 (301)
T COG3440          77 GVDAPFELLQGDGKWHLDIKEGFDGLSIRTLPTEKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVLQ  150 (301)
T ss_pred             CCCCchHHhhccchhhhcccccCCccccCCCccHhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            244556667899999999999999999999887665666 5788999999999999999999999999998873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	404
3q0c_X	167	Crystal Structure Of Suvh5 Sra-Fully Methylated Cg		5e-31
3q0b_X	167	Crystal Structure Of Suvh5 Sra- Fully Methylated Cg		3e-30
3f8j_B	212	Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C		4e-23
2zo0_B	212	Mouse Np95 Sra Domain Dna Specific Complex 1 Length		5e-23
2zkd_A	210	Crystal Structure Of The Sra Domain Of Mouse Np95 I		5e-23
2pb7_A	239	Crystal Structure Of The Sra Domain Of The Human Uh		1e-21
3bi7_A	212	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		2e-21
3clz_A	212	The Set And Ring Associated (Sra) Domain Of Uhrf1 B		2e-21
3dwh_A	208	Structural And Functional Analysis Of Sra Domain Le		2e-21
3oln_A	231	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		1e-17

>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 103/173 (59%), Gaps = 15/173 (8%)
Query: 205 IGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMY 264
           IG +PGV VG +F  R E+  +G H    +GIDYM    K D    +   A +IV SG Y
Sbjct: 3   IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM----KDDGGELV---ATSIVSSGGY 55
Query: 265 EDDLDNAEDVVYTGQGGHNLTGDKRQ---IRDQKLERGNLALKNCVDQDLPVRVIRG--- 318
            D LDN++ ++YTGQGG+   G K+     +DQ+L  GNLALKN +++  PVRVIRG   
Sbjct: 56  NDVLDNSDVLIYTGQGGN--VGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKN 113
Query: 319 HDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371
               SS   K Y YDGLY V +YW E G  G  VFK++LRR+ GQP L   +V
Sbjct: 114 TTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEV 166

>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 102/173 (58%), Gaps = 15/173 (8%)
Query: 205 IGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMY 264
           IG +PGV VG +F  R E+  +G H    +GIDY     K D    +   A +IV SG Y
Sbjct: 3   IGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYX----KDDGGELV---ATSIVSSGGY 55
Query: 265 EDDLDNAEDVVYTGQGGHNLTGDKRQ---IRDQKLERGNLALKNCVDQDLPVRVIRG--- 318
            D LDN++ ++YTGQGG+   G K+     +DQ+L  GNLALKN +++  PVRVIRG   
Sbjct: 56  NDVLDNSDVLIYTGQGGN--VGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKN 113
Query: 319 HDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371
               SS   K Y YDGLY V +YW E G  G  VFK++LRR+ GQP L   +V
Sbjct: 114 TTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEV 166

>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 96/192 (50%), Gaps = 31/192 (16%)
Query: 199 LYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAI 258
           +  A   G IPGV VG  +  R ++   G H   + GI   G S  G Y         ++
Sbjct: 1   IVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SL 49
Query: 259 VLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCVD------ 308
           VL+G YEDD+DN     YTG GG +L+G+KR   Q  DQKL   N AL  NC        
Sbjct: 50  VLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKG 109
Query: 309 -------QDLPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLR 358
                  Q  PVRV+R   G   S     +   YDG+YKVVKYW E+G SGF V++Y LR
Sbjct: 110 AEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLR 169
Query: 359 RLEGQPILTTNQ 370
           R + +P   T +
Sbjct: 170 RDDTEPEPWTRE 181

>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 95/190 (50%), Gaps = 31/190 (16%)
Query: 201 SAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVL 260
            A   G IPGV VG  +  R ++   G H   + GI   G S  G Y         ++VL
Sbjct: 3   PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SLVL 51
Query: 261 SGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCVD-------- 308
           +G YEDD+DN     YTG GG +L+G+KR   Q  DQKL   N AL  NC          
Sbjct: 52  AGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAE 111
Query: 309 -----QDLPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRL 360
                Q  PVRV+R   G   S     +   YDG+YKVVKYW E+G SGF V++Y LRR 
Sbjct: 112 AEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRD 171
Query: 361 EGQPILTTNQ 370
           + +P   T +
Sbjct: 172 DTEPEPWTRE 181

>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 96/193 (49%), Gaps = 31/193 (16%)
Query: 198 ILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVA 257
            +  A   G IPGV VG  +  R ++   G H   + GI   G S  G Y         +
Sbjct: 13  TIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------S 61
Query: 258 IVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCVD----- 308
           +VL+G YEDD+DN     YTG GG +L+G+KR   Q  DQKL   N AL  NC       
Sbjct: 62  LVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEK 121
Query: 309 --------QDLPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRL 357
                   Q  PVRV+R   G   S     +   YDG+YKVVKYW E+G SGF V++Y L
Sbjct: 122 GAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLL 181
Query: 358 RRLEGQPILTTNQ 370
           RR + +P   T +
Sbjct: 182 RRDDTEPEPWTRE 194

>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 206 GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYE 265
           G IPG+ VG  +  R ++   G H   + GI   G S  G Y         ++VL+G YE
Sbjct: 15  GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SLVLAGGYE 63
Query: 266 DDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCV----DQD------- 310
           DD+D+     YTG GG +L+G+KR   Q  DQKL   N AL  NC     DQ+       
Sbjct: 64  DDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDW 123
Query: 311 ---LPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
               PVRV+R   G   S     +   YDG+YKVVKYW EKG SGF V++Y LRR + +P
Sbjct: 124 RSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 183
Query: 365 ILTTNQ 370
              T +
Sbjct: 184 GPWTKE 189

>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 206 GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYE 265
           G IPG+ VG  +  R ++   G H   + GI   G S  G Y         ++VL+G YE
Sbjct: 7   GPIPGIPVGTXWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SLVLAGGYE 55
Query: 266 DDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCV----DQD------- 310
           DD+D+     YTG GG +L+G+KR   Q  DQKL   N AL  NC     DQ+       
Sbjct: 56  DDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDW 115
Query: 311 ---LPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
               PVRV+R   G   S     +   YDG+YKVVKYW EKG SGF V++Y LRR + +P
Sbjct: 116 RSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
Query: 365 ILTTNQ 370
              T +
Sbjct: 176 GPWTKE 181

>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 206 GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYE 265
           G IPG+ VG  +  R ++   G H   + GI   G S  G Y         ++VL+G YE
Sbjct: 7   GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SLVLAGGYE 55
Query: 266 DDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCV----DQD------- 310
           DD+D+     YTG GG +L+G+KR   Q  DQKL   N AL  NC     DQ+       
Sbjct: 56  DDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDW 115
Query: 311 ---LPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
               PVRV+R   G   S     +   YDG+YKVVKYW EKG SGF V++Y LRR + +P
Sbjct: 116 RSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
Query: 365 ILTTNQ 370
              T +
Sbjct: 176 GPWTKE 181

>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 32/186 (17%)
Query: 206 GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYE 265
           G IPG+ VG  +  R ++   G H   + GI   G S  G Y         ++VL+G YE
Sbjct: 10  GPIPGIPVGTMWRFRVQVSESGVHRPHVAGI--HGRSNDGAY---------SLVLAGGYE 58
Query: 266 DDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK-NCV----DQD------- 310
           DD+D+     YTG GG +L+G+KR   Q  DQKL   N AL  NC     DQ+       
Sbjct: 59  DDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDW 118
Query: 311 ---LPVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQP 364
               PVRV+R   G   S     +   YDG+YKVVKYW EKG SGF V++Y LRR + +P
Sbjct: 119 RSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 178
Query: 365 ILTTNQ 370
              T +
Sbjct: 179 GPWTKE 184

>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 89/187 (47%), Gaps = 33/187 (17%)
Query: 206 GDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYE 265
           G IPG+ VG  +  R ++   G H   + GI   G S  G Y         ++VL+G + 
Sbjct: 31  GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGI--HGRSNDGAY---------SLVLAGGFA 79
Query: 266 DDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNCVDQDL----------- 311
           D++D  ++  YTG GG NL G+KR      DQ L   N AL    D  L           
Sbjct: 80  DEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNW 139
Query: 312 ----PVRVIR---GHDCSSSYTGKVYTYDGLYKVVKYWAEKGLS-GFTVFKYRLRRLEGQ 363
               PVRVIR   G   S     +   YDG+YKVVKYW E   S GF V++Y LRR + +
Sbjct: 140 RAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVE 199
Query: 364 PILTTNQ 370
           P   T++
Sbjct: 200 PAPWTSE 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
3q0b_X	167	Histone-lysine N-methyltransferase, H3 lysine-9 S	9e-55
3oln_A	231	E3 ubiquitin-protein ligase UHRF2; DNA-binding, me	4e-54
3fde_A	212	E3 ubiquitin-protein ligase UHRF1; SRA domain, bas	5e-52
2pb7_A	239	E3 ubiquitin-protein ligase UHRF1; beta barrel, NE	5e-51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167

 Score =  177 bits (451), Expect = 9e-55
 Identities = 76/173 (43%), Positives = 101/173 (58%), Gaps = 11/173 (6%)

Query: 203 KRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSG 262
           + IG +PGV VG +F  R E+  +G H    +GIDYM         +    +A +IV SG
Sbjct: 1   QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMK-------DDGGELVATSIVSSG 53

Query: 263 MYEDDLDNAEDVVYTGQGGH-NLTGDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGH-- 319
            Y D LDN++ ++YTGQGG+     +    +DQ+L  GNLALKN +++  PVRVIRG   
Sbjct: 54  GYNDVLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKN 113

Query: 320 -DCSSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV 371
               SS   K Y YDGLY V +YW E G  G  VFK++LRR+ GQP L   +V
Sbjct: 114 TTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEV 166

>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231

 Score =  178 bits (452), Expect = 4e-54
 Identities = 61/213 (28%), Positives = 86/213 (40%), Gaps = 33/213 (15%)

Query: 180 KAKRPDLKAVSKMMKNNEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYM 239
             +                +  +   G IPG+ VG  +  R ++   G H   + GI   
Sbjct: 5   SRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGR 64

Query: 240 GMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKL 296
                          A ++VL+G + D++D  ++  YTG GG NL G+KR      DQ L
Sbjct: 65  SNDG-----------AYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTL 113

Query: 297 ERGNLALK---------------NCVDQDLPVRVIRG---HDCSSSYTGKVYTYDGLYKV 338
              N AL                       PVRVIR       S     +   YDG+YKV
Sbjct: 114 TNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKV 173

Query: 339 VKYWAEKGLS-GFTVFKYRLRRLEGQPILTTNQ 370
           VKYW E   S GF V++Y LRR + +P   T++
Sbjct: 174 VKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSE 206

>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212

 Score =  172 bits (436), Expect = 5e-52
 Identities = 71/210 (33%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 201 SAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVL 260
            A   G IPGV VG  +  R ++   G H   + GI                  A ++VL
Sbjct: 3   PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRS-----------NDGAYSLVL 51

Query: 261 SGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALK------------- 304
           +G YEDD+DN     YTG GG +L+G+KR   Q  DQKL   N AL              
Sbjct: 52  AGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAE 111

Query: 305 -NCVDQDLPVRVIRGHDC---SSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRRL 360
                Q  PVRV+R       S     +   YDG+YKVVKYW E+G SGF V++Y LRR 
Sbjct: 112 AEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRD 171

Query: 361 EGQPILTTNQVRFINGRVPQSLSEIRGYQK 390
           + +P   T + +    ++  ++    GY +
Sbjct: 172 DTEPEPWTREGKDRTRQLGLTMQYPEGYLE 201

>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239

 Score =  170 bits (432), Expect = 5e-51
 Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 32/211 (15%)

Query: 199 LYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAI 258
           +  +   G IPG+ VG  +  R ++   G H   + GI                  A ++
Sbjct: 8   IVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRS-----------NDGAYSL 56

Query: 259 VLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNCVDQDL---- 311
           VL+G YEDD+D+     YTG GG +L+G+KR   Q  DQKL   N AL       +    
Sbjct: 57  VLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQE 116

Query: 312 -----------PVRVIRGHDC---SSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRL 357
                      PVRV+R       S     +   YDG+YKVVKYW EKG SGF V++Y L
Sbjct: 117 GAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLL 176

Query: 358 RRLEGQPILTTNQVRFINGRVPQSLSEIRGY 388
           RR + +P   T + +    ++  ++    GY
Sbjct: 177 RRDDDEPGPWTKEGKDRIKKLGLTMQYPEGY 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 53/367 (14%), Positives = 99/367 (26%), Gaps = 121/367 (32%)

Query: 9   RVSARIQEKQREEKQREEKLRLVKRRV---DLLTDEIIGNNGAAVDDGDVDDEEKSTINA 65
           R       K R    + E  RL+K +     LL           V   +V +      NA
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----------VLL-NVQN--AKAWNA 261

Query: 66  FSKSNK-----RGRKVKDAENVEKEEEVEEEKLEKGKVSVESTS---------------- 104
           F+ S K     R ++V D  +      +  +         E  S                
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 105 ---------S--GAELVDG-NVVNFAEKSDHAKVKETLRLF---------NKYYLQ---- 139
                    S     + DG    +  +  +  K+   +             K + +    
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 140 --GVQEEEQRCCRI------VEVDSKASKKSNKSKSKKGDVPEDEA--------KNKAKR 183
                        I       +V    +K    S  +K   P++          + K K 
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKL 439

Query: 184 PDLKAVSKMMKNNEILYSAKRIGDIPGV-----------HVGHQFYS--RAEMVAVGFHS 230
            +  A+ + + ++   Y+  +  D   +           H+GH   +    E + + F  
Sbjct: 440 ENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRM 495

Query: 231 -----HWLNG-IDYMGMSYKGD------------YKNYIF---PLAVAIVLSGMYEDDLD 269
                 +L   I +   ++               YK YI    P    +V +    D L 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLP 553

Query: 270 NAEDVVY 276
             E+ + 
Sbjct: 554 KIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
3oln_A	231	E3 ubiquitin-protein ligase UHRF2; DNA-binding, me	100.0
3q0b_X	167	Histone-lysine N-methyltransferase, H3 lysine-9 S	100.0
3fde_A	212	E3 ubiquitin-protein ligase UHRF1; SRA domain, bas	100.0
2pb7_A	239	E3 ubiquitin-protein ligase UHRF1; beta barrel, NE	100.0

>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12

Probab=100.00  E-value=2.6e-65  Score=481.17  Aligned_cols=181  Identities=35%  Similarity=0.561  Sum_probs=145.1

Q ss_pred             ccCCccHHHHHHhhhcCc-ccccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEE
Q 036083          180 KAKRPDLKAVSKMMKNNE-ILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAI  258 (404)
Q Consensus       180 ~~~R~DLkA~~~m~~~~~-~vn~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SI  258 (404)
                      .++|.|.+++++..+... +++|.++|||||||+|||||+||+||+++|||+|+|+|||++..           .+|+||
T Consensus         4 ~~~~~~g~~~a~~g~~~~~~~~p~~~~G~IPGV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~-----------~GA~SI   72 (231)
T 3oln_A            4 ESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSN-----------DGAYSL   72 (231)
T ss_dssp             --------------------CCCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETT-----------TEEEEE
T ss_pred             cccccccccccccceeEEEeecCCccCcCCCCCcCcCEEccHHHHhhhCCCCcccCCcccCCC-----------CCeEEE
Confidence            478999999999999876 79999999999999999999999999999999999999998632           369999


Q ss_pred             EecCCCCCCCCCCCeEEEEccCCCCCCCCcc---ccccccccchhHHHHHh---------------hhCCCCEEEEeccC
Q 036083          259 VLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNC---------------VDQDLPVRVIRGHD  320 (404)
Q Consensus       259 VlSGgYeDD~D~GD~LiYTGqGG~d~~g~kr---Q~~DQkLerGNlAL~nS---------------~~~g~PVRVIRG~k  320 (404)
                      |+||||+||.|+||+|+|||+||+|+.+|++   |++||+|++||+||++|               |+.++|||||||++
T Consensus        73 VlSGgYeDD~D~Gd~liYTGsGG~d~~gnkrt~~q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k  152 (231)
T 3oln_A           73 VLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFK  152 (231)
T ss_dssp             EESSCSSTTCBCSSEEEEECCCC-----------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGG
T ss_pred             EecCCccccCCCCCEEEEEcCCCccCcCcccccccccccccccchHHHHhhhhccccccccchhhhhccCCceEEEeccc
Confidence            9999999999999999999999999988764   89999999999999988               45689999999999


Q ss_pred             C--CCCCCC-ceeEecceEEEEEEEEeecCc-ceEEEEEEEEEeCCCCCCCcccc
Q 036083          321 C--SSSYTG-KVYTYDGLYKVVKYWAEKGLS-GFTVFKYRLRRLEGQPILTTNQV  371 (404)
Q Consensus       321 ~--~s~~ap-kgYRYDGLYkVv~yW~EkGk~-G~~V~KFkL~RlpGQP~L~~~~v  371 (404)
                      +  .+.|+| ++|||||||+|++||.++|++ ||.||||+|+|+|+||++|+..-
T Consensus       153 ~~k~s~yaP~~gyrYDGLY~V~~~W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~  207 (231)
T 3oln_A          153 GRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEG  207 (231)
T ss_dssp             GTTTCTTSCSSSEEEEEEEEEEEEEEEECTTTCCEEEEEEEEECCSSCCTTSHHH
T ss_pred             cCcCCCccCCCCeEeCeEEEEEEEEeccCCcCCeEEEEEEEEECCCCCCCcchhh
Confidence            6  478998 699999999999999999999 99999999999999999998754

>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*

Probab=100.00  E-value=5.4e-65  Score=459.59  Aligned_cols=161  Identities=47%  Similarity=0.721  Sum_probs=141.6

Q ss_pred             cccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEccCCCC
Q 036083          204 RIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQGGHN  283 (404)
Q Consensus       204 ~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGqGG~d  283 (404)
                      +|||||||+|||||++|+|||++|+|+|+|+||||++..+       +.++|+|||+||||+||.|+||+|+|||+||++
T Consensus         2 ~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~-------~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG~~   74 (167)
T 3q0b_X            2 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDG-------GELVATSIVSSGGYNDVLDNSDVLIYTGQGGNV   74 (167)
T ss_dssp             CCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSS-------SCEEEEEEEESSSTTCEECSSSEEEEECSCTTC
T ss_pred             cccCCCCCcCccEecchHHHhHhCcCCCccCCeecccccC-------CCcceEEEEeCCCcccccCCCCEEEEECCCCCc
Confidence            7999999999999999999999999999999999987532       257999999999999999999999999999999


Q ss_pred             CC-CCccccccccccchhHHHHHhhhCCCCEEEEeccCCC--CCCCC-ceeEecceEEEEEEEEeecCcceEEEEEEEEE
Q 036083          284 LT-GDKRQIRDQKLERGNLALKNCVDQDLPVRVIRGHDCS--SSYTG-KVYTYDGLYKVVKYWAEKGLSGFTVFKYRLRR  359 (404)
Q Consensus       284 ~~-g~krQ~~DQkLerGNlAL~nS~~~g~PVRVIRG~k~~--s~~ap-kgYRYDGLYkVv~yW~EkGk~G~~V~KFkL~R  359 (404)
                      +. ++++|+.||+|++||+||++|+++++|||||||+++.  +.++| ++|||||||+|++||.++|++||.||||+|+|
T Consensus        75 ~~~~~~~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R  154 (167)
T 3q0b_X           75 GKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRR  154 (167)
T ss_dssp             C-----CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             cccccccccccCccchhHHHHHHHHHcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEE
Confidence            86 6789999999999999999999999999999999983  55667 79999999999999999999999999999999


Q ss_pred             eCCCCCCCcccc
Q 036083          360 LEGQPILTTNQV  371 (404)
Q Consensus       360 lpGQP~L~~~~v  371 (404)
                      +||||+|++++|
T Consensus       155 ~~gQp~l~~~~~  166 (167)
T 3q0b_X          155 IPGQPELPWKEV  166 (167)
T ss_dssp             CTTSCCCCC---
T ss_pred             cCCCCCCChhhc
Confidence            999999999875

>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*

Probab=100.00  E-value=3.5e-62  Score=455.53  Aligned_cols=161  Identities=43%  Similarity=0.674  Sum_probs=150.0

Q ss_pred             ccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEEEEcc
Q 036083          200 YSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVVYTGQ  279 (404)
Q Consensus       200 n~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~LiYTGq  279 (404)
                      .|.++|||||||+|||||++|+||+++|+|+++|+||+++..           .+|+|||+||||+||.|+||+|+|||+
T Consensus         2 ~p~~~~G~iPGv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~-----------~GA~SIVlSGGY~DD~D~Gd~l~YTGs   70 (212)
T 3fde_A            2 MPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSLVLAGGYEDDVDNGNYFTYTGS   70 (212)
T ss_dssp             CCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETT-----------TEEEEEEECSCSTTCEECSSEEEEECS
T ss_pred             CCcccccCCCCCcCccEecCHHHHhHhccCCCCcCCcccCCC-----------cceEEEEeCCCcccCCCCCCEEEEecc
Confidence            588999999999999999999999999999999999997632           369999999999999999999999999


Q ss_pred             CCCCCCCCcc---ccccccccchhHHHHHhh--------------hCCCCEEEEeccCC--CCCCCC-ceeEecceEEEE
Q 036083          280 GGHNLTGDKR---QIRDQKLERGNLALKNCV--------------DQDLPVRVIRGHDC--SSSYTG-KVYTYDGLYKVV  339 (404)
Q Consensus       280 GG~d~~g~kr---Q~~DQkLerGNlAL~nS~--------------~~g~PVRVIRG~k~--~s~~ap-kgYRYDGLYkVv  339 (404)
                      ||+++.||++   |++||+|++||+||++||              ++++|||||||++.  .+.|+| ++|||||||+|+
T Consensus        71 GG~d~~gnkr~~~q~~DQ~l~~gNlAL~~s~~~~~~~~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~gyrYDGLY~V~  150 (212)
T 3fde_A           71 GGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVV  150 (212)
T ss_dssp             CCBCCTTTCSCCCBCSCCCSCHHHHHHHHTSSSCCCTTCEECSSGGGSCCEEEEEESCSSTTCSSSCSSSEEEEEEEEEE
T ss_pred             CCccCcCccccCcccccccccccchHHHhhccccccccchhhhhhhcCCcEEEEcccCcCCCCccCCCCCeEeCeEEEEE
Confidence            9999988775   899999999999999885              57999999999997  478999 599999999999


Q ss_pred             EEEEeecCcceEEEEEEEEEeCCCCCCCcccc
Q 036083          340 KYWAEKGLSGFTVFKYRLRRLEGQPILTTNQV  371 (404)
Q Consensus       340 ~yW~EkGk~G~~V~KFkL~RlpGQP~L~~~~v  371 (404)
                      +||.++|++||.||||+|+|+||||++|+..-
T Consensus       151 ~~W~e~g~~G~~V~kf~L~R~~gqp~~w~~~~  182 (212)
T 3fde_A          151 KYWPERGKSGFLVWRYLLRRDDTEPEPWTREG  182 (212)
T ss_dssp             EEEEEECTTSSEEEEEEEEECCSSCCTTSHHH
T ss_pred             EEEEccCCCCcEEEEEEEEECCCCCCCcchhh
Confidence            99999999999999999999999999998754

>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12

Probab=100.00  E-value=3.4e-62  Score=462.00  Aligned_cols=164  Identities=41%  Similarity=0.635  Sum_probs=146.6

Q ss_pred             CcccccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCCCCCeEE
Q 036083          196 NEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLDNAEDVV  275 (404)
Q Consensus       196 ~~~vn~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D~GD~Li  275 (404)
                      .+.++|.++|||||||+|||||+||+|||++|||+++|+|||++..           .+|+|||+||||+||.|+||+|+
T Consensus         5 ~~~~~~~~~~G~iPGV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~-----------~GA~SIVlSGgYeDD~D~GD~li   73 (239)
T 2pb7_A            5 ECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSLVLAGGYEDDVDHGNFFT   73 (239)
T ss_dssp             CCCSSCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETT-----------TEEEEEEESSCSTTCCBCSSEEE
T ss_pred             EEEecCCCcccCCCCCcCCCEECCHHHHHHhCCccccccCcccCCC-----------CCEEEEEECCCccccccCCcEEE
Confidence            4689999999999999999999999999999999999999997632           37999999999999999999999


Q ss_pred             EEccCCCCCCCCcc---ccccccccchhHHHHHh---------------hhCCCCEEEEeccCC--CCCCCC-ceeEecc
Q 036083          276 YTGQGGHNLTGDKR---QIRDQKLERGNLALKNC---------------VDQDLPVRVIRGHDC--SSSYTG-KVYTYDG  334 (404)
Q Consensus       276 YTGqGG~d~~g~kr---Q~~DQkLerGNlAL~nS---------------~~~g~PVRVIRG~k~--~s~~ap-kgYRYDG  334 (404)
                      |||+||+++.+|++   |.+||+|++||+||++|               |++++|||||||+++  .+.|+| +||||||
T Consensus        74 YTGsGG~d~~gnkr~~~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~GyrYDG  153 (239)
T 2pb7_A           74 YTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDG  153 (239)
T ss_dssp             EECCCC----------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEE
T ss_pred             EEccCCccCcccccccccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCcCCcccCCceEEeCC
Confidence            99999999988764   89999999999999986               568999999999998  588999 5999999


Q ss_pred             eEEEEEEEEeecCcceEEEEEEEEEeCCCCCCCccc
Q 036083          335 LYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQ  370 (404)
Q Consensus       335 LYkVv~yW~EkGk~G~~V~KFkL~RlpGQP~L~~~~  370 (404)
                      ||+|++||.++|++||.||||+|+|+|+||++|+..
T Consensus       154 LY~V~~~w~e~gk~G~~V~kf~L~R~~gQP~~w~~~  189 (239)
T 2pb7_A          154 IYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKE  189 (239)
T ss_dssp             EEEEEEEEEEECTTSSEEEEEEEEECCSSCCTTSHH
T ss_pred             eEEEEEEEEeecCCCcEEEEEEEEECCCCCCCcccc
Confidence            999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d2zkda1	209	b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase	1e-61

>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  195 bits (498), Expect = 1e-61
 Identities = 67/186 (36%), Positives = 88/186 (47%), Gaps = 31/186 (16%)

Query: 199 LYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAI 258
           +  A   G IPGV VG  +  R ++   G H   + GI                  A ++
Sbjct: 13  IVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSL 61

Query: 259 VLSGMYEDDLDNAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNCVDQDL---- 311
           VL+G YEDD+DN     YTG GG +L+G+KR   Q  DQKL   N AL       +    
Sbjct: 62  VLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKG 121

Query: 312 ----------PVRVIRGHDC---SSSYTGKVYTYDGLYKVVKYWAEKGLSGFTVFKYRLR 358
                     PVRV+R       S     +   YDG+YKVVKYW E+G SGF V++Y LR
Sbjct: 122 AEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLR 181

Query: 359 RLEGQP 364
           R + +P
Sbjct: 182 RDDTEP 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d2zkda1	209	E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc	100.0

>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-63  Score=462.85  Aligned_cols=169  Identities=41%  Similarity=0.639  Sum_probs=154.6

Q ss_pred             Hhhhc-CcccccCCcccCCCCccccceeccHHHHHHhccCCCcCCCcccccCCCCCCCCCCCCCceEEEEecCCCCCCCC
Q 036083          191 KMMKN-NEILYSAKRIGDIPGVHVGHQFYSRAEMVAVGFHSHWLNGIDYMGMSYKGDYKNYIFPLAVAIVLSGMYEDDLD  269 (404)
Q Consensus       191 ~m~~~-~~~vn~~k~iG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdy~g~~~~g~~~~~~~~gA~SIVlSGgYeDD~D  269 (404)
                      ++.+. .+.++|.++|||||||+|||||+||+||+++|||+++|+||+|+..           .+|+|||+||||+||.|
T Consensus         4 ~~~~~~~~~~~p~~~~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~~-----------~GA~SIV~SGgYeDD~D   72 (209)
T d2zkda1           4 CVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-----------DGAYSLVLAGGYEDDVD   72 (209)
T ss_dssp             TCCCSCCCCSSCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETT-----------TEEEEEEECSCSTTCEE
T ss_pred             cccccceEEeCCCCcccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecCC-----------CceEEEEECCCcccccc
Confidence            44443 3478999999999999999999999999999999999999998642           36999999999999999


Q ss_pred             CCCeEEEEccCCCCCCCCcc---ccccccccchhHHHHHh--------------hhCCCCEEEEeccCC--CCCCCC-ce
Q 036083          270 NAEDVVYTGQGGHNLTGDKR---QIRDQKLERGNLALKNC--------------VDQDLPVRVIRGHDC--SSSYTG-KV  329 (404)
Q Consensus       270 ~GD~LiYTGqGG~d~~g~kr---Q~~DQkLerGNlAL~nS--------------~~~g~PVRVIRG~k~--~s~~ap-kg  329 (404)
                      +||+|||||+||++..++++   |+.||+|++||+||++|              |++++|||||||+++  .+.|+| ++
T Consensus        73 ~gd~liYTG~GG~d~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~~~~~~p~~g  152 (209)
T d2zkda1          73 NGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEG  152 (209)
T ss_dssp             CSSEEEEECSCCBCCTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSS
T ss_pred             CCcEEEEECCCCccccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeeccccCCCcCCCce
Confidence            99999999999999887664   89999999999999988              789999999999985  477887 79


Q ss_pred             eEecceEEEEEEEEeecCcceEEEEEEEEEeCCCCCCCccc
Q 036083          330 YTYDGLYKVVKYWAEKGLSGFTVFKYRLRRLEGQPILTTNQ  370 (404)
Q Consensus       330 YRYDGLYkVv~yW~EkGk~G~~V~KFkL~RlpGQP~L~~~~  370 (404)
                      |||||||+|++||.++|++||.||||+|+|+||||++++..
T Consensus       153 YrYDGLY~V~~~w~e~gk~G~~V~rF~L~R~~gQp~p~~~~  193 (209)
T d2zkda1         153 NRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTRE  193 (209)
T ss_dssp             EEEEEEEEEEEEEEEECTTSSEEEEEEEEECCSSCCTTSHH
T ss_pred             EEeCcEEEEEEEEEccCCCCcEEEEEEEEECCCCCCCcccC
Confidence            99999999999999999999999999999999999998764