Citrus Sinensis ID: 036084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
WSYCESLSSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWESSLDQLS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEccccccEEEEEEEcccccEEEEcccHHHHcccccEEEcccccEEEccccccEEEEEEcccEEccccccccccccccccccccccEEEEEEEEccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccEEEEEEEcccccEEEEcccHHHHccccEEEEEcHccEEEEcccHHHEEEEEEccccEEEEEHHcccEEEcccccccccccEEEcEEEEcccccHHHHHHHHc
Coil and Loop (DISEMBL)
wsyceslssmdqdsglhkggcrcrkvrwrvraprsveawkcncsdcsmrgnvhftvapenfellgnseefltthtfgtgtakhVFCKVCgitsfyvprgtpngmLLLSdikhndghnwessldqls
Flexible Loop (DISEMBL)
wsyceslssmdqdsglhkggcrcrkvrwrvraprsveawkcncsdcsMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWessldqls
Low Complexity Region (SEG)
WSYCESLSSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWESSLDQLS
Disordered region (IsUnstruct)
*****************KGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIK***************
Disordered Region (DISOPRED)
*****************KGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWES**D***
Disordered Region (DISEMBL)
********************CRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHN*********
Disordered Region (DISPRO)
WSYCESLSSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWESSLDQLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WSYCESLSSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHNDGHNWESSLDQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q7Z7K6	275	Centromere protein V OS=H	yes	no	0.690	0.316	0.465	1e-16
Q9CXS4	252	Centromere protein V OS=M	yes	no	0.690	0.345	0.465	1e-16

>sp|Q7Z7K6|CENPV_HUMAN Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 17  HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
           H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct: 148 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-ITTYTF 206

Query: 77  GTGTAKHVFCKVCGITSFYVPRGTPNGM 104
            T  A+H FCK CG+ SFY PR  P G 
Sbjct: 207 NTHKAQHTFCKRCGVQSFYTPRSNPGGF 234

Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.
Homo sapiens (taxid: 9606)

>sp|Q9CXS4|CENPV_MOUSE Centromere protein V OS=Mus musculus GN=Cenpv PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 17  HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
           H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct: 125 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITTYTF 183

Query: 77  GTGTAKHVFCKVCGITSFYVPRGTPNGM 104
            T  A+H FCK CG+ SFY PR  P G 
Sbjct: 184 NTHKAQHTFCKRCGVQSFYTPRSNPGGF 211

Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224069242	137	predicted protein [Populus trichocarpa]	0.912	0.839	0.619	1e-38
224069230	137	predicted protein [Populus trichocarpa]	0.912	0.839	0.619	6e-38
298204850	201	unnamed protein product [Vitis vinifera]	0.904	0.567	0.576	2e-35
118482086	137	unknown [Populus trichocarpa]	0.912	0.839	0.579	3e-35
15237879	135	carbon-sulfur lyase [Arabidopsis thalian	0.888	0.829	0.577	6e-35
297811829	123	carbon-sulfur lyase [Arabidopsis lyrata	0.888	0.910	0.577	7e-35
118481980	137	unknown [Populus trichocarpa]	0.912	0.839	0.579	1e-34
225451350	141	PREDICTED: centromere protein V-like [Vi	0.888	0.794	0.577	2e-34
356569855	137	PREDICTED: centromere protein V-like [Gl	0.912	0.839	0.555	2e-34
224069238	137	predicted protein [Populus trichocarpa]	0.912	0.839	0.571	3e-34

>gi|224069242|ref|XP_002302935.1| predicted protein [Populus trichocarpa] gi|222844661|gb|EEE82208.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 91/126 (72%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ D  +H GGC CR+VRWRV+AP SV AW CNCSDCSMRGN HF V  E F+LLG+S+E
Sbjct: 1   MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNTHFIVPSEKFDLLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK CGITSFY+PR  P+G+           L   +IKH DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYIPRSNPDGVAVTFRCVDPGTLTHVEIKHYDGRNW 120

Query: 119 ESSLDQ 124
           ESS +Q
Sbjct: 121 ESSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069230|ref|XP_002302932.1| predicted protein [Populus trichocarpa] gi|222844658|gb|EEE82205.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 90/126 (71%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ D  +H GGC CR+VRWRV+AP SV AW CNCSDCSMRGN+ F V  E FELLG+S+E
Sbjct: 1   MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNIQFIVPSEKFELLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+G+           L   +IKH DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSHPDGVSITCRCVDPGTLTHVEIKHFDGQNW 120

Query: 119 ESSLDQ 124
           E S +Q
Sbjct: 121 ERSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204850|emb|CBI34157.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 87/125 (69%), Gaps = 11/125 (8%)

Query: 8   SSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNS 67
           S MD    +H GGC CR+VRW+V AP SV  WKC+CS+C MRGN HF V  E FELLG+S
Sbjct: 59  SEMDSKKVVHSGGCHCRRVRWKVEAPASVLVWKCDCSNCFMRGNAHFIVPAEKFELLGDS 118

Query: 68  EEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGH 116
           +EFLTT+TFGT TAKH FCK+CGITSFY+PR   +G+           L   +IK+ DG 
Sbjct: 119 KEFLTTYTFGTHTAKHTFCKICGITSFYIPRSNQDGVAVSFMCVDPGTLTHVEIKNFDGK 178

Query: 117 NWESS 121
           NWE+S
Sbjct: 179 NWENS 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482086|gb|ABK92974.1| unknown [Populus trichocarpa]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 88/126 (69%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ D  +H GGC CR+VRWRV+AP SV AW CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVAWNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+G+           L   +IK+ DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSNPDGVSITYRCVDPGTLTHVEIKNFDGQNW 120

Query: 119 ESSLDQ 124
           E S ++
Sbjct: 121 ERSYNE 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237879|ref|NP_197196.1| carbon-sulfur lyase [Arabidopsis thaliana] gi|238481283|ref|NP_001154714.1| carbon-sulfur lyase [Arabidopsis thaliana] gi|9755695|emb|CAC01707.1| putative protein [Arabidopsis thaliana] gi|26451264|dbj|BAC42734.1| unknown protein [Arabidopsis thaliana] gi|28973087|gb|AAO63868.1| unknown protein [Arabidopsis thaliana] gi|332004977|gb|AED92360.1| carbon-sulfur lyase [Arabidopsis thaliana] gi|332004978|gb|AED92361.1| carbon-sulfur lyase [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 87/123 (70%), Gaps = 11/123 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ +   H+GGC C K++WRV+A RSV AW CNCSDCSMRGNVHF V   NFELL +S++
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           F+TT+TFGT TAKH FCKVCGITSFY+PR  P+G+           L   ++K  DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 119 ESS 121
           E S
Sbjct: 121 EMS 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811829|ref|XP_002873798.1| carbon-sulfur lyase [Arabidopsis lyrata subsp. lyrata] gi|297319635|gb|EFH50057.1| carbon-sulfur lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 88/123 (71%), Gaps = 11/123 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ +  LH+GGC C KV+WRV+A  SV AW+CNCSDCSMRGNVHF V   NFELL +S++
Sbjct: 1   MESELILHEGGCHCGKVKWRVKAATSVVAWRCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLL-----------SDIKHNDGHNW 118
           F+TT+TFGT TAKH FCKVCGITSFY+PR  P+G+ +             ++K  DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLDHVEVKSYDGQNW 120

Query: 119 ESS 121
           E S
Sbjct: 121 EVS 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481980|gb|ABK92921.1| unknown [Populus trichocarpa]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ D  +H GGC CR+VRWRV+AP SV A  CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVALNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+G            L   +IK+ DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRANPDGFSITLRCVDPGTLTHVEIKNFDGQNW 120

Query: 119 ESSLDQ 124
           E S +Q
Sbjct: 121 ERSYNQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451350|ref|XP_002279711.1| PREDICTED: centromere protein V-like [Vitis vinifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 11/123 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           MD    +H GGC CR+VRW+V AP SV  WKC+CS+C MRGN HF V  E FELLG+S+E
Sbjct: 1   MDSKKVVHSGGCHCRRVRWKVEAPASVLVWKCDCSNCFMRGNAHFIVPAEKFELLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK+CGITSFY+PR   +G+           L   +IK+ DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKICGITSFYIPRSNQDGVAVSFMCVDPGTLTHVEIKNFDGKNW 120

Query: 119 ESS 121
           E+S
Sbjct: 121 ENS 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569855|ref|XP_003553110.1| PREDICTED: centromere protein V-like [Glycine max]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           MD +  +H GGC C+ VRW+V AP SV AW CNCS C MR N HF V  +NFELLG+SE+
Sbjct: 1   MDAEKVVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSEK 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TF T TAKH FCK+CGITSFY PR  P+G+           L   +I+H DG NW
Sbjct: 61  FLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKNW 120

Query: 119 ESSLDQ 124
           +S+ +Q
Sbjct: 121 DSAYNQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069238|ref|XP_002302934.1| predicted protein [Populus trichocarpa] gi|222844660|gb|EEE82207.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 87/126 (69%), Gaps = 11/126 (8%)

Query: 10  MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
           M+ D  +H GGC CR+VRWRV+AP SV A  CNCS CSMR ++ F V  E FELLG+S+E
Sbjct: 1   MESDMVMHYGGCHCRRVRWRVQAPSSVVALNCNCSICSMRASIQFIVPSEKFELLGDSKE 60

Query: 70  FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGM-----------LLLSDIKHNDGHNW 118
           FLTT+TFGT TAKH FCK CGITSFYVPR  P+G+           L   +IK+ DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYVPRSNPDGVSITYRCVDPGTLTHVEIKNFDGQNW 120

Query: 119 ESSLDQ 124
           E S ++
Sbjct: 121 ERSYNE 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2148221	135	AT5G16940 "AT5G16940" [Arabido	0.888	0.829	0.577	3.5e-36
UNIPROTKB|Q0C2K4	144	HNE_1321 "Putative uncharacter	0.865	0.756	0.429	1.8e-23
UNIPROTKB|F1NQ58	154	CENPV "Uncharacterized protein	0.682	0.558	0.459	4e-19
DICTYBASE|DDB_G0291800	129	DDB_G0291800 "glutathione-depe	0.904	0.883	0.373	5.1e-19
ZFIN|ZDB-GENE-060526-76	146	cenpv "centromere protein V" [	0.849	0.732	0.386	5.1e-19
UNIPROTKB|F1SDE3	154	CENPV "Uncharacterized protein	0.785	0.642	0.431	8.3e-19
UNIPROTKB|F1PH09	170	CENPV "Uncharacterized protein	0.682	0.505	0.471	1.4e-18
UNIPROTKB|J9PA58	184	CENPV "Uncharacterized protein	0.682	0.467	0.471	1.4e-18
UNIPROTKB|Q7Z7K6	275	CENPV "Centromere protein V" [	0.682	0.312	0.471	1.4e-18
MGI|MGI:1920389	252	Cenpv "centromere protein V" [	0.682	0.341	0.471	1.4e-18

TAIR|locus:2148221 AT5G16940 "AT5G16940" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 71/123 (57%), Positives = 89/123 (72%)

Query:    10 MDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEE 69
             M+ +   H+GGC C K++WRV+A RSV AW CNCSDCSMRGNVHF V   NFELL +S++
Sbjct:     1 MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query:    70 FLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLL---------LS--DIKHNDGHNW 118
             F+TT+TFGT TAKH FCKVCGITSFY+PR  P+G+ +         L+  ++K  DG NW
Sbjct:    61 FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query:   119 ESS 121
             E S
Sbjct:   121 EMS 123

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|Q0C2K4 HNE_1321 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/121 (42%), Positives = 71/121 (58%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC CR VR+ V+ P + E   CNC+ C+M GN+H  V    F LL   +  L+ +TF
Sbjct:    20 HSGGCHCRAVRFEVQLPEAFEVEDCNCTMCAMSGNIHVIVPASRFRLLQGKDN-LSQYTF 78

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNGMLLL-------SDIKHN----DGHNWESSLDQL 125
              TG AKH+FCK CGI SFY+PR  P+G+ +         D+K      DG NWE++  +L
Sbjct:    79 NTGAAKHLFCKTCGIKSFYIPRSNPDGVAVTWRALDDWMDLKVTVVPFDGQNWEANAARL 138

Query:   126 S 126
             +
Sbjct:   139 A 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NQ58 CENPV "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 40/87 (45%), Positives = 53/87 (60%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  +R+ V A   +  + CNCS C+ + N HF V    F+LL  ++  LTT+TF
Sbjct:    27 HTGGCHCGAIRFEVWASADLHVFNCNCSICTKKQNRHFIVPASRFKLLKGADN-LTTYTF 85

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNG 103
              T  A+H FCK CG+ SFY PR  P+G
Sbjct:    86 NTHRAQHTFCKTCGVQSFYTPRSNPDG 112

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0051233 "spindle midzone" evidence=IEA

DICTYBASE|DDB_G0291800 DDB_G0291800 "glutathione-dependent formaldehyde-activating, GFA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 47/126 (37%), Positives = 68/126 (53%)

Query:    11 DQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEF 70
             +Q    H GGC C KVR+   AP+  E   CNCS C+ +G +H  V  + F+LL   E+ 
Sbjct:     3 EQQEVTHTGGCHCGKVRFEAVAPKDCEGIYCNCSMCTKKGIIHLIVTKDKFKLL-QGEDN 61

Query:    71 LTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLL---------LSDIKHN--DGHNWE 119
             L+ +TF T  AKH FC  CGI  +Y+ R  PN + +         ++ IK +  DG NWE
Sbjct:    62 LSLYTFNTHIAKHYFCSTCGICPYYIARSHPNDIDVNYRCLDNFDITKIKISNFDGRNWE 121

Query:   120 SSLDQL 125
               + ++
Sbjct:   122 DQVHKI 127

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-060526-76 cenpv "centromere protein V" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 46/119 (38%), Positives = 63/119 (52%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  VR+ V +   +  + CNCS C+ + N HF V    F LL  S+  +T +TF
Sbjct:    14 HTGGCHCGAVRFEVWSAPDLHVFNCNCSICTKKQNRHFIVPKSQFTLLQGSDNIIT-YTF 72

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNGMLL---------LSDIKHND--GHNWESSLDQ 124
              T  AKH FCK CG+ SFY PR  P+G  +         ++ +   D  G NWE S+ +
Sbjct:    73 NTHMAKHTFCKTCGVQSFYTPRSNPDGFGVAPHCLDPGTVNSVTVEDFCGQNWEESMQE 131

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|F1SDE3 CENPV "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/102 (43%), Positives = 58/102 (56%)

Query:     4 CESLSSMDQDSGL--HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENF 61
             C +  ++ +  GL  H GGC C  VR+ V A   +  + CNCS C  + N HF V    F
Sbjct:    12 CTAFITVVEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRF 71

Query:    62 ELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNG 103
             +LL  +E  +TT+TF T  A+H FCK CG+ SFY PR  P G
Sbjct:    72 KLLKGAES-ITTYTFNTHKAQHTFCKRCGVQSFYSPRSNPGG 112

GO:0051233 "spindle midzone" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|F1PH09 CENPV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct:    43 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITTYTF 101

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNG 103
              T  A+H FCK CG+ SFY PR  P G
Sbjct:   102 NTHKAQHTFCKRCGVQSFYTPRSNPGG 128

GO:0051233 "spindle midzone" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|J9PA58 CENPV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct:    57 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITTYTF 115

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNG 103
              T  A+H FCK CG+ SFY PR  P G
Sbjct:   116 NTHKAQHTFCKRCGVQSFYTPRSNPGG 142

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

UNIPROTKB|Q7Z7K6 CENPV "Centromere protein V" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct:   148 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-ITTYTF 206

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNG 103
              T  A+H FCK CG+ SFY PR  P G
Sbjct:   207 NTHKAQHTFCKRCGVQSFYTPRSNPGG 233

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IMP

GO:0034508 "centromere complex assembly" evidence=IMP

GO:0031508 "centromeric heterochromatin assembly" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0000776 "kinetochore" evidence=IDA

GO:0051233 "spindle midzone" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032467 "positive regulation of cytokinesis" evidence=IMP

GO:0001667 "ameboidal cell migration" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1920389 Cenpv "centromere protein V" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query:    17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
             H GGC C  VR+ V A   +  + CNCS C  + N HF V    F+LL  +E  +TT+TF
Sbjct:   125 HTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITTYTF 183

Query:    77 GTGTAKHVFCKVCGITSFYVPRGTPNG 103
              T  A+H FCK CG+ SFY PR  P G
Sbjct:   184 NTHKAQHTFCKRCGVQSFYTPRSNPGG 210

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO;ISS

GO:0001667 "ameboidal cell migration" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=ISO;ISS

GO:0032467 "positive regulation of cytokinesis" evidence=ISO;ISS

GO:0033044 "regulation of chromosome organization" evidence=ISO;ISS

GO:0034508 "centromere complex assembly" evidence=ISO;ISS

GO:0051233 "spindle midzone" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.4.1	LOW CONFIDENCE prediction!
4th Layer	4.4.1.22	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
COG3791	133	COG3791, COG3791, Uncharacterized conserved protei	6e-13
pfam04828	92	pfam04828, GFA, Glutathione-dependent formaldehyde	0.004

>gnl|CDD|226314 COG3791, COG3791, Uncharacterized conserved protein [Function unknown]

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 17  HKGGCRCRKVRWRVRA-PRSVEAWKCNCSDCSMR-GNVHFTVAPENFELLGNSEEFLTTH 74
            +GGC C  VR+ V   P  V A  C+CSDC    G      A    + L      L T+
Sbjct: 4   IEGGCLCGAVRFEVEGDPGHVSA--CHCSDCRKASGAAFAAYAVVPRDAL-RGTRGLPTY 60

Query: 75  TFGTGTAKHVFCKVCGITSFYVPRGTP 101
            F +G+A   FC  CG   F+      
Sbjct: 61  YFSSGSAGRGFCPTCGSPLFWRGPDED 87

Length = 133

>gnl|CDD|218282 pfam04828, GFA, Glutathione-dependent formaldehyde-activating enzyme

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 41  CNCSDCSMRG----NVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYV 96
           C+C+DC        + +  V  E+       +  L  +          FC  CG   F  
Sbjct: 3   CHCTDCQKASGSAFSANAVVPAEDVTWTSGEDA-LKVYDDSGNGVSRYFCPNCGSPLFGR 61

Query: 97  PRGTPNGMLL 106
               P  +++
Sbjct: 62  STRAPGLVIV 71

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PRK05417	191	glutathione-dependent formaldehyde-activating enzy	99.94
COG3791	133	Uncharacterized conserved protein [Function unknow	99.94
TIGR02820	182	formald_GSH S-(hydroxymethyl)glutathione synthase.	99.93
PF04828	92	GFA: Glutathione-dependent formaldehyde-activating	99.85
KOG4192	134	consensus Uncharacterized conserved protein [Funct	99.84
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	91.92
PF13248	26	zf-ribbon_3: zinc-ribbon domain	91.41
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	89.45
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	87.97
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	84.53
PRK00432	50	30S ribosomal protein S27ae; Validated	84.12
smart00661	52	RPOL9 RNA polymerase subunit 9.	82.26
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	81.63

>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional

Probab=99.94  E-value=5.3e-27  Score=170.85  Aligned_cols=108  Identities=20%  Similarity=0.357  Sum_probs=92.5

Q ss_pred             CCceeEEe---eeCCC--eEEEEEcCCCCeeeeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCeeee
Q 036084           13 DSGLHKGG---CRCRK--VRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKH   83 (126)
Q Consensus        13 ~~~~~~Gs---C~CGa--V~~~v~~~p~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r   83 (126)
                      +...++|+   |+||+  |+|+++++|... ..|||++|||.+|    .++.+|+++|+|+.+ ++.++.|. +++.++|
T Consensus        17 ~~~~f~Gg~l~ClCG~~aVry~v~g~p~~~-~~CHCs~CrK~sGs~fs~~a~vp~d~~~it~g-~~~l~~y~-ss~~i~R   93 (191)
T PRK05417         17 GAEGFAGGTLVCKCTSNPVEVRVKAQTAHN-HACGCTKCWKPEGALFSVVAVVPRDNVTVTAN-GDKLKVVD-ESATIQR   93 (191)
T ss_pred             CcCccCCCCcEEeCCCcEEEEEEecCCCce-eeeChhhhhccccCcceEEEEEEhhheEEEeC-CcceEEEe-CCCCeEe
Confidence            35668999   99996  999999999876 8999999999975    467899999999877 67788887 6788999


Q ss_pred             eeCCcCCcccccCCC----CCCCcEEEEEeeeecCCCCcccccccC
Q 036084           84 VFCKVCGITSFYVPR----GTPNGMLLLSDIKHNDGHNWESSLDQL  125 (126)
Q Consensus        84 ~FC~~CGs~l~~~~~----~~p~~~~v~v~~g~~d~~~~~~~~~~~  125 (126)
                      +||++||++||.+.+    ..|+.  +.|++|+||++.|.+|..++
T Consensus        94 ~FC~~CGS~L~~~~e~~~~~~pgl--~fV~~gllDd~~~~~P~~~i  137 (191)
T PRK05417         94 HACKECGVHMYGRIENKDHPFYGL--DFVHTELSQEQGWSAPGFAA  137 (191)
T ss_pred             eeCCCCCCccccccccccCCCCCe--EEEehhhcCCCCCCCceEEe
Confidence            999999999999866    34565  57999999999999997664

>COG3791 Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=9.7e-27  Score=161.39  Aligned_cols=102  Identities=24%  Similarity=0.421  Sum_probs=81.8

Q ss_pred             eEEeeeCCCeEEEEEcCCCCeeeeecChhhhcCCc-ee---EEecCCCeEEcCCCCcceeEEecCCCeeeeeeCCcCCcc
Q 036084           17 HKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGN-VH---FTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGIT   92 (126)
Q Consensus        17 ~~GsC~CGaV~~~v~~~p~~~~~~ChC~~Crk~~g-~~---~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~FC~~CGs~   92 (126)
                      +.|+||||+|+|++++++... .+|||++|||.+| ++   ..++.+.|+++.+ .   ..|..++..+.|.||++||++
T Consensus         4 ~~G~C~CGaVrf~v~~~~~~~-~~ChCs~Crk~~G~~~~~~~~~~~~~~~~~~g-~---~~~~~~s~~~~r~FC~~CGs~   78 (133)
T COG3791           4 IEGGCLCGAVRFEVEGDPGHV-SACHCSDCRKASGAAFAAYAVVPRDALRGTRG-L---PTYYFSSGSAGRGFCPTCGSP   78 (133)
T ss_pred             cccceeeceEEEEEecCCCCc-eeeCchHhhhhhCCceeeeeecccceeeecCC-C---ceEEeecCCCCCeecccCCCc
Confidence            449999999999999999876 7999999999954 33   4567788888766 2   234446677899999999999


Q ss_pred             cccCCCCCCCcEEEEEeeeecCCCCcccccccC
Q 036084           93 SFYVPRGTPNGMLLLSDIKHNDGHNWESSLDQL  125 (126)
Q Consensus        93 l~~~~~~~p~~~~v~v~~g~~d~~~~~~~~~~~  125 (126)
                      ||+...+..  -.+.|+++.||++++..|..++
T Consensus        79 l~~~~~~~~--~~~~v~~~~ld~p~~~~p~~~~  109 (133)
T COG3791          79 LFWRGPDED--PFVGVNAGALDDPEFLPPQVQI  109 (133)
T ss_pred             eEEecCCCC--ceEEEEEeeecCcccCCCceee
Confidence            999876643  2378999999998888876654

>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase

Probab=99.93  E-value=5.9e-26  Score=164.10  Aligned_cols=109  Identities=21%  Similarity=0.349  Sum_probs=89.1

Q ss_pred             CceeEEe---eeCC--CeEEEEEcCCCCeeeeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCeeeee
Q 036084           14 SGLHKGG---CRCR--KVRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHV   84 (126)
Q Consensus        14 ~~~~~Gs---C~CG--aV~~~v~~~p~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~   84 (126)
                      ...++|+   |+||  +|+|+++++|... ..|||++|||++|    .++.+++++|+|+.| ++.++.|. +++.+.|.
T Consensus        14 ~~~~~GgtasClCGsvaV~y~v~~~p~~v-~~CHCs~CRK~TGsafs~~~~v~~~~~~i~~G-~~~l~~Y~-ss~~~~R~   90 (182)
T TIGR02820        14 STSFAGGTLKCLCTSNKVTVKIKGQSAHN-HACGCSKCWKPEGAIFSVVAVVPRDNVTVTAN-GDKLKVVD-ASATIQRH   90 (182)
T ss_pred             CCCCCCCCcEEccCCCEEEEEEecCCCce-eeeChHHhhccccCcceEEEEEEhhheEEecC-CcceEEEe-CCCCEEee
Confidence            4458899   9999  6999999998766 8999999999975    367899999999877 67788897 67789999


Q ss_pred             eCCcCCcccccCCCC-CCCcE-EEEEeeeecCCCCcccccccC
Q 036084           85 FCKVCGITSFYVPRG-TPNGM-LLLSDIKHNDGHNWESSLDQL  125 (126)
Q Consensus        85 FC~~CGs~l~~~~~~-~p~~~-~v~v~~g~~d~~~~~~~~~~~  125 (126)
                      ||++||++||++... .++.+ .+.|++|+||++.+++|..+|
T Consensus        91 FC~~CGS~L~~~~~~~~~~~~g~v~I~aGtLDd~~~~~P~~hI  133 (182)
T TIGR02820        91 ACKGCGTHMYGRIENKDHPFYGLDFIHTELSAEDGWSAPGFAA  133 (182)
T ss_pred             cCCCCCCcccccccccCCCccceeEEEEeecCCCCcCCCeEEE
Confidence            999999999988642 23332 147999999997776777664

The formation of S-(hydroxymethyl)glutathione synthase from glutathione and formaldehyde occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification.

>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase

Probab=99.85  E-value=3.1e-22  Score=128.95  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=64.3

Q ss_pred             eeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCeeeeeeCCcCCcccccCCCCCCCcEEEEEeeeecC
Q 036084           39 WKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIKHND  114 (126)
Q Consensus        39 ~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~FC~~CGs~l~~~~~~~p~~~~v~v~~g~~d  114 (126)
                      +.|||++|||.+|    .++.+|+++|+|+.| ++.++.|..+++.++|+||++||++||......|+.  +.|++|+||
T Consensus         1 ~~ChC~~Cr~~~g~~~~~~~~~~~~~~~~~~g-~~~l~~y~~s~~~~~r~FC~~CGs~l~~~~~~~~~~--~~V~~g~ld   77 (92)
T PF04828_consen    1 YVCHCSDCRKWSGSPFSAWAIVPKDDFRWTSG-SENLKEYQFSGKGVERYFCPTCGSPLFSEDERDPDL--VGVNAGTLD   77 (92)
T ss_dssp             EEE-STTCHHHTT-SSEEEEEEEGGGEEEEE--GGGEEEC--TTSSCEEEEETTT--EEEEEESSTTTE--EEEEGGGBT
T ss_pred             CEeeChHHhcccCCceeeEEEEcccceEEeec-cccceEEEeCCCcCcCcccCCCCCeeecccCCCCCE--EEEEeEeeC
Confidence            4799999999987    578899999999888 678999986788899999999999999876666775  689999999


Q ss_pred             CCCcccccccC
Q 036084          115 GHNWESSLDQL  125 (126)
Q Consensus       115 ~~~~~~~~~~~  125 (126)
                      +++.++|..+|
T Consensus        78 ~~~~~~p~~hi   88 (92)
T PF04828_consen   78 DPDEFKPKAHI   88 (92)
T ss_dssp             T--S--EEEEE
T ss_pred             CCCCCCCEEEE
Confidence            99988887665

Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.

>KOG4192 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1.1e-20  Score=126.77  Aligned_cols=110  Identities=43%  Similarity=0.874  Sum_probs=97.1

Q ss_pred             CCceeEEeeeCCCeEEEEEcCCCCeeeeecChhhhcCCceeEEecCCCeEEcCCCCcceeEEecCCCeeeeeeCCcCCcc
Q 036084           13 DSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGIT   92 (126)
Q Consensus        13 ~~~~~~GsC~CGaV~~~v~~~p~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~FC~~CGs~   92 (126)
                      +.+..+|+||||+|+|++.++....+..|+|++|++....++.+|..+|.+..| .+.+.+|.++...+.+.||+.||..
T Consensus         4 ~lV~H~GgCHCGaVkw~v~ap~~l~~~~Cncrics~k~~~hfivpas~f~ll~g-~efitty~~gth~aqhtfck~cGV~   82 (134)
T KOG4192|consen    4 GLVQHTGGCHCGAVKWSVWAPADLDGCDCNCRICSKKQNRHFIVPASRFVLLVG-AEFITTYTFGTHQAQHTFCKRCGVQ   82 (134)
T ss_pred             cceeecCCcccceEEEEEecccceEEeeccchhhhhccceEEEEeccceEEEeC-cceEEEEEeccchhheeeeccccce
Confidence            467789999999999999999876668899999999999999999999999888 7889999988889999999999999


Q ss_pred             cccCCCCCCCcEEE-----------EEeeeecCCCCcccccc
Q 036084           93 SFYVPRGTPNGMLL-----------LSDIKHNDGHNWESSLD  123 (126)
Q Consensus        93 l~~~~~~~p~~~~v-----------~v~~g~~d~~~~~~~~~  123 (126)
                      -|+..++.|+.+.|           .|.+-.|||.+|+..++
T Consensus        83 sf~~~rs~p~~~~i~phCld~gTlr~v~~~~fnGqdwe~~~e  124 (134)
T KOG4192|consen   83 SFYSPRSNPYGKGIAPHCLDEGTLRSVVWEEFNGQDWEATME  124 (134)
T ss_pred             eccccccCCCceeecceeecCCceeEEEEEEecCcchhHhhh
Confidence            99999988887665           57788888888776544

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=91.92  E-value=0.05  Score=26.36  Aligned_cols=12  Identities=33%  Similarity=0.811  Sum_probs=9.5

Q ss_pred             eeeeCCcCCccc
Q 036084           82 KHVFCKVCGITS   93 (126)
Q Consensus        82 ~r~FC~~CGs~l   93 (126)
                      .-.||++||++|
T Consensus        12 ~~~fC~~CG~~l   23 (23)
T PF13240_consen   12 DAKFCPNCGTPL   23 (23)
T ss_pred             cCcchhhhCCcC
Confidence            446899999875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=91.41  E-value=0.064  Score=26.63  Aligned_cols=13  Identities=31%  Similarity=0.751  Sum_probs=10.1

Q ss_pred             eeeeeCCcCCccc
Q 036084           81 AKHVFCKVCGITS   93 (126)
Q Consensus        81 ~~r~FC~~CGs~l   93 (126)
                      ....||++||++|
T Consensus        14 ~~~~fC~~CG~~L   26 (26)
T PF13248_consen   14 PDAKFCPNCGAKL   26 (26)
T ss_pred             cccccChhhCCCC
Confidence            3457999999875

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=89.45  E-value=0.14  Score=27.21  Aligned_cols=15  Identities=27%  Similarity=0.337  Sum_probs=6.7

Q ss_pred             eeCCcCCcccccCCC
Q 036084           84 VFCKVCGITSFYVPR   98 (126)
Q Consensus        84 ~FC~~CGs~l~~~~~   98 (126)
                      .||++||.+|-....
T Consensus         1 kfC~~CG~~l~~~ip   15 (34)
T PF14803_consen    1 KFCPQCGGPLERRIP   15 (34)
T ss_dssp             -B-TTT--B-EEE--
T ss_pred             CccccccChhhhhcC
Confidence            399999999866543

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=87.97  E-value=0.16  Score=26.35  Aligned_cols=16  Identities=38%  Similarity=0.841  Sum_probs=9.1

Q ss_pred             eeeeCCcCCcccccCC
Q 036084           82 KHVFCKVCGITSFYVP   97 (126)
Q Consensus        82 ~r~FC~~CGs~l~~~~   97 (126)
                      ++.||+.||+++....
T Consensus         2 ~~rfC~~CG~~t~~~~   17 (32)
T PF09297_consen    2 NHRFCGRCGAPTKPAP   17 (32)
T ss_dssp             TTSB-TTT--BEEE-S
T ss_pred             CCcccCcCCccccCCC
Confidence            3569999999986654

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=84.53  E-value=1.2  Score=25.71  Aligned_cols=17  Identities=35%  Similarity=0.755  Sum_probs=11.6

Q ss_pred             eeeeCCcCCcccccCCC
Q 036084           82 KHVFCKVCGITSFYVPR   98 (126)
Q Consensus        82 ~r~FC~~CGs~l~~~~~   98 (126)
                      .+.|||+||-.+|...+
T Consensus        18 k~~~CPrCG~gvfmA~H   34 (51)
T COG1998          18 KNRFCPRCGPGVFMADH   34 (51)
T ss_pred             ccccCCCCCCcchhhhc
Confidence            44589999976665443

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=84.12  E-value=1.3  Score=25.47  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=13.1

Q ss_pred             eeEEecCCCee--eeeeCCcCCcc
Q 036084           71 LTTHTFGTGTA--KHVFCKVCGIT   92 (126)
Q Consensus        71 l~~y~~~~~~~--~r~FC~~CGs~   92 (126)
                      +..|.-.+..+  .+.|||+||+.
T Consensus         6 ~~~y~v~~~~v~~~~~fCP~Cg~~   29 (50)
T PRK00432          6 REYYEVDGGKVKRKNKFCPRCGSG   29 (50)
T ss_pred             eeeEEECCCEEEEccCcCcCCCcc
Confidence            34454333333  34589999996

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=82.26  E-value=0.65  Score=26.27  Aligned_cols=13  Identities=31%  Similarity=0.628  Sum_probs=10.9

Q ss_pred             eCCcCCcccccCC
Q 036084           85 FCKVCGITSFYVP   97 (126)
Q Consensus        85 FC~~CGs~l~~~~   97 (126)
                      ||+.||..|+...
T Consensus         2 FCp~Cg~~l~~~~   14 (52)
T smart00661        2 FCPKCGNMLIPKE   14 (52)
T ss_pred             CCCCCCCcccccc
Confidence            9999999887653

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=81.63  E-value=0.59  Score=24.85  Aligned_cols=15  Identities=27%  Similarity=0.565  Sum_probs=11.6

Q ss_pred             eeCCcCCcccccCCC
Q 036084           84 VFCKVCGITSFYVPR   98 (126)
Q Consensus        84 ~FC~~CGs~l~~~~~   98 (126)
                      .||+.||.-|+....
T Consensus         2 ~FCp~C~nlL~p~~~   16 (35)
T PF02150_consen    2 RFCPECGNLLYPKED   16 (35)
T ss_dssp             -BETTTTSBEEEEEE
T ss_pred             eeCCCCCccceEcCC
Confidence            599999999976543

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3fac_A	118	Crystal Structure Of Rhodobacter Sphaeroides Protei		8e-08

>pdb|3FAC|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Protein Rsp_2168. Northeast Structural Genomics Target Rhr83. Length = 118

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 18  KGGCRCRKVRWRVRAPRS-VEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
           KG C C  V   V       +A +C+CS C  RG +  T    +  ++  +E  LT + F
Sbjct: 2   KGTCHCGAVEIEVELLNGFADARRCDCSFCRRRGAIAATARLSDLRVVRGAEN-LTLYQF 60
Query: 77  GTGTAKHVFCKVCGITSFYVPRGTP 101
           GT TAKH FC+ CGI + +  R  P
Sbjct: 61  GTRTAKHWFCRTCGIYTHHQRRSNP 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3fac_A	118	Putative uncharacterized protein; complete proteom	2e-20
1x6m_A	196	GFA, glutathione-dependent formaldehyde-activating	5e-08

>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2} Length = 118

 Score = 78.9 bits (194), Expect = 2e-20
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 14/113 (12%)

Query: 18  KGGCRCRKVRWRVRAP-RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 76
           KG C C  V   V       +A +C+CS C  RG +  T    +  ++    E LT + F
Sbjct: 2   KGTCHCGAVEIEVELLNGFADARRCDCSFCRRRGAIAATARLSDLRVVRG-AENLTLYQF 60

Query: 77  GTGTAKHVFCKVCGITSFYVPRGTPNGMLL------------LSDIKHNDGHN 117
           GT TAKH FC+ CGI + +  R  P    +            L ++   DG N
Sbjct: 61  GTRTAKHWFCRTCGIYTHHQRRSNPEEYGVNVAILEGVNPRDLGEVPWTDGVN 113

>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A* Length = 196

 Score = 48.2 bits (114), Expect = 5e-08
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 15  GLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMR-GNVHFTVA---PENFELLGNSEEF 70
           G     C    VR  VRA  +     C C+ C    G +   VA    +  E+L  +E+ 
Sbjct: 29  GTLHCKCSTNPVRVAVRAQ-TAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGAEKL 87

Query: 71  LTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIK 111
              +       +   C+ CG+  +       +    L  + 
Sbjct: 88  EIVN--AEAPIQRHRCRDCGVHMYGRIENRDHPFYGLDFVH 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3fac_A	118	Putative uncharacterized protein; complete proteom	99.96
1x6m_A	196	GFA, glutathione-dependent formaldehyde-activating	99.93
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	91.5
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	87.5

>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}

Probab=99.96  E-value=6.8e-30  Score=172.60  Aligned_cols=100  Identities=32%  Similarity=0.542  Sum_probs=86.9

Q ss_pred             eEEeeeCCCeEEEEEcC--CCCeeeeecChhhhcCCceeEEecCCCeEEcCCCCcceeEEecCCCeeeeeeCCcCCcccc
Q 036084           17 HKGGCRCRKVRWRVRAP--RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSF   94 (126)
Q Consensus        17 ~~GsC~CGaV~~~v~~~--p~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~FC~~CGs~l~   94 (126)
                      ++|+|+||+|+|+++++  |... ..|||++|||.+++++.+|.++|+|+.| ++.|+.|.++++..+|+||++||++||
T Consensus         1 m~GsC~CGaV~~~v~~~~~p~~~-~~ChC~~Crk~g~~~~~~~~~~~~~~~g-~~~l~~y~~s~~~~~r~FC~~CGs~l~   78 (118)
T 3fac_A            1 MKGTCHCGAVEIEVELLNGFADA-RRCDCSFCRRRGAIAATARLSDLRVVRG-AENLTLYQFGTRTAKHWFCRTCGIYTH   78 (118)
T ss_dssp             CEEECSSSCCEEEECCTTTTTTC-BCCCSTTHHHHCCCEEEEEGGGEEEEEC-GGGEEEECCTTSCSEEEEETTTCCEEE
T ss_pred             CCeEeeCCCEEEEEEcCCCcCCe-eeeCchHhhccCCEEEEEcccceEEcCC-hhHceEEecCCCCEeeEECCCCCcccc
Confidence            37999999999999976  5555 8999999999987888999999999888 688999987777789999999999999


Q ss_pred             cCCCCCCCcEEEEEeeeecCCCCccc
Q 036084           95 YVPRGTPNGMLLLSDIKHNDGHNWES  120 (126)
Q Consensus        95 ~~~~~~p~~~~v~v~~g~~d~~~~~~  120 (126)
                      +.....|+.  +.|++|+||+++.++
T Consensus        79 ~~~~~~~~~--~~V~~g~ld~~~~~~  102 (118)
T 3fac_A           79 HQRRSNPEE--YGVNVAILEGVNPRD  102 (118)
T ss_dssp             EECSSCTTE--EEEEGGGBTTCCGGG
T ss_pred             CccCCCCCE--EEEEecccCCCChHH
Confidence            887666775  579999999987554

>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*

Probab=99.93  E-value=8.6e-27  Score=169.85  Aligned_cols=113  Identities=20%  Similarity=0.366  Sum_probs=93.0

Q ss_pred             cCCCCceeEEe---eeCC--CeEEEEEcCCCCeeeeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCe
Q 036084           10 MDQDSGLHKGG---CRCR--KVRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGT   80 (126)
Q Consensus        10 m~~~~~~~~Gs---C~CG--aV~~~v~~~p~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~   80 (126)
                      |+.+..+++|+   |+||  +|+|+++++|... ..|||++|||.+|    .++.+|+++|+|+.| ++.|+.|. +++.
T Consensus        19 ~~~~~~~~~G~~lsC~CG~v~V~~~~~~~p~~~-~~ChCs~Crk~~Gs~f~~~~~vp~~~~~~~~G-~~~l~~y~-ss~~   95 (196)
T 1x6m_A           19 IKPAQPGFAGGTLHCKCSTNPVRVAVRAQTAHN-HVCGCTKCWKPEGAIFSQVAVVGRDALEVLEG-AEKLEIVN-AEAP   95 (196)
T ss_dssp             CCCCCTTCCCEEEECSCSSSCCEEEECSCCEEE-EEECCSSSCCCTTCSSEEEEEEEGGGEEEEEC-GGGEEESC-TTSS
T ss_pred             CCCCCccccCCCCEecCCCCeEEEEEecCCCCe-EecCcHHHhcccCCccEEEEEEehhHeEEecC-CCceEEEe-CCCC
Confidence            44556679999   9999  9999999888765 8999999999985    467899999999888 67899995 7778


Q ss_pred             eeeeeCCcCCcccccCCCCCCCc--EEEEEeeeecCCCCcccccccC
Q 036084           81 AKHVFCKVCGITSFYVPRGTPNG--MLLLSDIKHNDGHNWESSLDQL  125 (126)
Q Consensus        81 ~~r~FC~~CGs~l~~~~~~~p~~--~~v~v~~g~~d~~~~~~~~~~~  125 (126)
                      ++|+||++||++||+...+.++.  -.+.|++|+||++.+++|..+|
T Consensus        96 ~~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD~~~~~~P~~hi  142 (196)
T 1x6m_A           96 IQRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAA  142 (196)
T ss_dssp             EEEEEETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEE
T ss_pred             eeeEECCCCCCcCCcccccCCCCccceEEEEEeccCCcccCCCeEEE
Confidence            99999999999999887654321  0267999999999988876554

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=91.50  E-value=0.082  Score=29.68  Aligned_cols=17  Identities=35%  Similarity=0.761  Sum_probs=12.9

Q ss_pred             eeeeCCcCCcccccCCC
Q 036084           82 KHVFCKVCGITSFYVPR   98 (126)
Q Consensus        82 ~r~FC~~CGs~l~~~~~   98 (126)
                      .+.|||+||+.+|....
T Consensus        18 ~~k~CP~CG~~~fm~~~   34 (50)
T 3j20_Y           18 KNKFCPRCGPGVFMADH   34 (50)
T ss_dssp             SSEECSSSCSSCEEEEC
T ss_pred             ecccCCCCCCceEEecC
Confidence            46799999998876543

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=87.50  E-value=0.16  Score=29.04  Aligned_cols=14  Identities=43%  Similarity=0.961  Sum_probs=11.1

Q ss_pred             eeeCCcCCcccccC
Q 036084           83 HVFCKVCGITSFYV   96 (126)
Q Consensus        83 r~FC~~CGs~l~~~   96 (126)
                      +.|||.||+.++..
T Consensus        18 ~~fCPkCG~~~~ma   31 (55)
T 2k4x_A           18 HRFCPRCGPGVFLA   31 (55)
T ss_dssp             SCCCTTTTTTCCCE
T ss_pred             cccCcCCCCceeEe
Confidence            67999999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1x6ma_	196	b.88.1.4 (A:) Glutathione-dependent formaldehyde-a	1e-06

>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]} Length = 196

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: Glutathione-dependent formaldehyde-activating enzyme, Gfa
domain: Glutathione-dependent formaldehyde-activating enzyme, Gfa
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 8   SSMDQDSGLHKGGCRCRKVRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVA----PENFEL 63
           +      G     C    VR  VRA  +     C C+ C       F+       +  E+
Sbjct: 22  AQPGFAGGTLHCKCSTNPVRVAVRAQ-TAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEV 80

Query: 64  LGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGMLLLSDIK 111
           L  +E+    +       +   C+ CG+  +       +    L  + 
Sbjct: 81  LEGAEKLEIVNAE--APIQRHRCRDCGVHMYGRIENRDHPFYGLDFVH 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1x6ma_	196	Glutathione-dependent formaldehyde-activating enzy	99.92
d2cona1	66	RNA-binding protein NOB1 (Nin one binding) {Mouse	82.27

>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: Glutathione-dependent formaldehyde-activating enzyme, Gfa
domain: Glutathione-dependent formaldehyde-activating enzyme, Gfa
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2e-26  Score=165.95  Aligned_cols=109  Identities=21%  Similarity=0.384  Sum_probs=89.1

Q ss_pred             CceeEEe---eeCCC--eEEEEEcCCCCeeeeecChhhhcCCc----eeEEecCCCeEEcCCCCcceeEEecCCCeeeee
Q 036084           14 SGLHKGG---CRCRK--VRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTAKHV   84 (126)
Q Consensus        14 ~~~~~Gs---C~CGa--V~~~v~~~p~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~~~~~~~r~   84 (126)
                      ...++|+   |+||.  |+|+++++|... ..|||++|||.+|    .++.+|+++|+|+++ ++.+++|. ++..++|+
T Consensus        23 ~~~f~GGtl~C~Cg~~~V~v~v~g~p~~~-~~CHCs~CrK~tGs~f~~~~~v~~d~~~vt~g-~~~l~~~~-ss~~i~R~   99 (196)
T d1x6ma_          23 QPGFAGGTLHCKCSTNPVRVAVRAQTAHN-HVCGCTKCWKPEGAIFSQVAVVGRDALEVLEG-AEKLEIVN-AEAPIQRH   99 (196)
T ss_dssp             CTTCCCEEEECSCSSSCCEEEECSCCEEE-EEECCSSSCCCTTCSSEEEEEEEGGGEEEEEC-GGGEEESC-TTSSEEEE
T ss_pred             CCccCCCceeEeeCCEEEEEEECCCccee-EeecCccccCCcCCceeEEEEEeccceEEccC-CccceEEe-ccCceeee
Confidence            3446666   99986  888888888765 7899999999985    367899999999988 78898887 67779999


Q ss_pred             eCCcCCcccccCCCCCCCc-E-EEEEeeeecCCCCcccccccC
Q 036084           85 FCKVCGITSFYVPRGTPNG-M-LLLSDIKHNDGHNWESSLDQL  125 (126)
Q Consensus        85 FC~~CGs~l~~~~~~~p~~-~-~v~v~~g~~d~~~~~~~~~~~  125 (126)
                      ||++||++||.+.++.+.. . .+.|++|+||++.|.+|..+|
T Consensus       100 FC~~CGs~lf~r~e~~~~~f~Gl~~I~~G~lDd~~~~~P~~hi  142 (196)
T d1x6ma_         100 RCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAA  142 (196)
T ss_dssp             EETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEE
T ss_pred             ccCCCCCcEEEeecCCCCcccceeEEEeeeeCCCCCCCCcEEE
Confidence            9999999999877654321 0 268999999999999997664

>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.27  E-value=0.16  Score=28.81  Aligned_cols=14  Identities=36%  Similarity=0.866  Sum_probs=11.2

Q ss_pred             eeeeeeCCcCCccc
Q 036084           80 TAKHVFCKVCGITS   93 (126)
Q Consensus        80 ~~~r~FC~~CGs~l   93 (126)
                      ...+.|||.||-.-
T Consensus        20 ~~~k~FCpkCGn~T   33 (66)
T d2cona1          20 DMNRVFCGHCGNKT   33 (66)
T ss_dssp             CSSCCSCSSSCCSC
T ss_pred             CcccccCcccCCCc
Confidence            35789999999764